Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024958.t1 | XP_024639745.1 | 88.6 | 657 | 25 | 2 | 2 | 608 | 5 | 661 | 0.00E+00 | 1114.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024958.t1 | Q6JDV7 | 57.0 | 658 | 212 | 12 | 8 | 607 | 16 | 660 | 2.3e-185 | 650.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024958.t1 | A0A396HL96 | 88.6 | 657 | 25 | 2 | 2 | 608 | 5 | 661 | 0.0e+00 | 1114.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024958 | MS.gene059371 | PPI |
| MS.gene059370 | MS.gene024958 | PPI |
| MS.gene024958 | MS.gene047859 | PPI |
| MS.gene024958 | MS.gene26467 | PPI |
| MS.gene26468 | MS.gene024958 | PPI |
| MS.gene059369 | MS.gene024958 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024958.t1 | MTR_5g005030 | 85.381 | 643 | 44 | 2 | 2 | 594 | 5 | 647 | 0.0 | 1108 |
| MS.gene024958.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 1.96e-34 | 140 |
| MS.gene024958.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 2.09e-34 | 140 |
| MS.gene024958.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 3.26e-34 | 139 |
| MS.gene024958.t1 | MTR_4g094755 | 27.374 | 358 | 180 | 10 | 46 | 329 | 12 | 363 | 5.79e-25 | 110 |
| MS.gene024958.t1 | MTR_4g094755 | 27.654 | 358 | 179 | 10 | 46 | 329 | 12 | 363 | 8.59e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024958.t1 | AT1G49980 | 56.164 | 657 | 219 | 11 | 8 | 607 | 16 | 660 | 0.0 | 678 |
| MS.gene024958.t1 | AT1G49980 | 56.164 | 657 | 219 | 11 | 8 | 607 | 16 | 660 | 0.0 | 678 |
| MS.gene024958.t1 | AT1G49980 | 56.164 | 657 | 219 | 11 | 8 | 607 | 16 | 660 | 0.0 | 678 |
| MS.gene024958.t1 | AT1G49980 | 56.164 | 657 | 219 | 11 | 8 | 607 | 16 | 660 | 0.0 | 678 |
| MS.gene024958.t1 | AT1G49980 | 56.164 | 657 | 219 | 11 | 8 | 607 | 16 | 660 | 0.0 | 678 |
| MS.gene024958.t1 | AT1G49980 | 58.852 | 610 | 184 | 9 | 8 | 561 | 16 | 614 | 0.0 | 676 |
| MS.gene024958.t1 | AT1G49980 | 58.852 | 610 | 184 | 9 | 8 | 561 | 16 | 614 | 0.0 | 676 |
| MS.gene024958.t1 | AT1G49980 | 56.455 | 519 | 206 | 10 | 97 | 607 | 1 | 507 | 0.0 | 534 |
| MS.gene024958.t1 | AT1G49980 | 56.455 | 519 | 206 | 10 | 97 | 607 | 1 | 507 | 0.0 | 534 |
| MS.gene024958.t1 | AT5G44750 | 29.231 | 390 | 227 | 14 | 49 | 406 | 376 | 748 | 4.01e-32 | 133 |
| MS.gene024958.t1 | AT5G44750 | 29.188 | 394 | 226 | 15 | 49 | 406 | 376 | 752 | 2.02e-31 | 131 |
| MS.gene024958.t1 | AT5G44740 | 28.134 | 359 | 178 | 10 | 45 | 329 | 11 | 363 | 2.69e-26 | 114 |
| MS.gene024958.t1 | AT5G44740 | 29.016 | 193 | 120 | 4 | 152 | 329 | 89 | 279 | 5.53e-14 | 75.5 |
| MS.gene024958.t1 | AT5G44740 | 29.016 | 193 | 120 | 4 | 152 | 329 | 106 | 296 | 8.21e-14 | 75.1 |
Find 102 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTCCTGACAATAATT+AGG | 0.155981 | 5.3:+543881 | None:intergenic |
| TTTATACAGGCCAGGAAATT+TGG | 0.195002 | 5.3:-547253 | MS.gene024958:intron |
| TTTAAGTAACCCTATGTTAA+AGG | 0.210169 | 5.3:-547400 | MS.gene024958:CDS |
| TACTCTGTGGGTTTAGGTTT+GGG | 0.229231 | 5.3:-545443 | MS.gene024958:CDS |
| TTCTCCTGAAGTAATGAAAT+TGG | 0.259914 | 5.3:+544380 | None:intergenic |
| CTCGCGACCTTTCAAGGATT+TGG | 0.266763 | 5.3:-547464 | MS.gene024958:CDS |
| CAGTGGATGTACAGAGGTTC+TGG | 0.277512 | 5.3:-543978 | MS.gene024958:CDS |
| TCATTTCCTGACAATAATTA+GGG | 0.281010 | 5.3:+543882 | None:intergenic |
| GGAGTTCGTTCTGCCATGCC+TGG | 0.295650 | 5.3:-547232 | MS.gene024958:CDS |
| TTTGAAGCAACTCAGCAAAA+TGG | 0.296723 | 5.3:+543768 | None:intergenic |
| ATTACCAAAGCTCCACTCTT+TGG | 0.298690 | 5.3:-544212 | MS.gene024958:CDS |
| TTACTCTGTGGGTTTAGGTT+TGG | 0.301255 | 5.3:-545444 | MS.gene024958:CDS |
| CCTGTTTCAGTACGATTAAT+AGG | 0.312775 | 5.3:-544635 | MS.gene024958:intron |
| ATTACCAATTTCATTACTTC+AGG | 0.328953 | 5.3:-544384 | MS.gene024958:CDS |
| GACGAAGGAAACCTCATAAT+TGG | 0.339849 | 5.3:+547335 | None:intergenic |
| CCTATTAATCGTACTGAAAC+AGG | 0.360995 | 5.3:+544635 | None:intergenic |
| ATTCTCCCCAAGCAAGATTT+CGG | 0.366592 | 5.3:-545412 | MS.gene024958:CDS |
| GTCAGGAAATGATAATGTTT+TGG | 0.369048 | 5.3:-543871 | MS.gene024958:CDS |
| AAGCTTCTCGCGACCTTTCA+AGG | 0.369769 | 5.3:-547470 | MS.gene024958:CDS |
| CACTAAACTGTGATACTCTA+AGG | 0.372191 | 5.3:+544448 | None:intergenic |
| GAATTTCATCGCTGGTAGTC+TGG | 0.379435 | 5.3:-547010 | MS.gene024958:CDS |
| GGTAAAATATACTGTCCATT+TGG | 0.386191 | 5.3:+546080 | None:intergenic |
| GTATACTTGTTGAAATCAAC+TGG | 0.388510 | 5.3:+547169 | None:intergenic |
| TTAAGTAACCCTATGTTAAA+GGG | 0.398161 | 5.3:-547399 | MS.gene024958:CDS |
| ATTGGCCTGCCCTTTAACAT+AGG | 0.399508 | 5.3:+547390 | None:intergenic |
| TACAGTGATTTGACCAGAAA+AGG | 0.401634 | 5.3:-547142 | MS.gene024958:intron |
| AGAACGAACTCCAAATTTCC+TGG | 0.407264 | 5.3:+547243 | None:intergenic |
| GATATCCACTGCCAATTATG+AGG | 0.408271 | 5.3:-547346 | MS.gene024958:intron |
| GATTTGGTTACATGTAGATA+TGG | 0.415193 | 5.3:-547448 | MS.gene024958:CDS |
| TTACTTCAGGAGAAGCCAAT+AGG | 0.428131 | 5.3:-544371 | MS.gene024958:CDS |
| AGACTACCAGCGATGAAATT+CGG | 0.430802 | 5.3:+547012 | None:intergenic |
| ATGTGAGCAGATGCTGGATA+AGG | 0.432320 | 5.3:-545802 | MS.gene024958:CDS |
| ATAACAGCCAAGCGGTCATT+TGG | 0.439647 | 5.3:+546059 | None:intergenic |
| AATCTTTCCTCAACAAAACT+TGG | 0.440500 | 5.3:+543806 | None:intergenic |
| ATTTGCTTTGTCTATTGATT+CGG | 0.443390 | 5.3:+543554 | None:intergenic |
| GAGTTCGTTCTGCCATGCCT+GGG | 0.453647 | 5.3:-547231 | MS.gene024958:CDS |
| CTGGGATCAACTTCTTTCCA+AGG | 0.459075 | 5.3:-543959 | MS.gene024958:CDS |
| AACAAATGATTACCATCAAA+AGG | 0.462445 | 5.3:+544243 | None:intergenic |
| ATAGTCTTCTGTGTAGGATC+AGG | 0.476314 | 5.3:+544405 | None:intergenic |
| ACCGAATCGCTTACTTGCTA+AGG | 0.488096 | 5.3:-546778 | MS.gene024958:intron |
| ATGCAACAGCGCTTCATCCT+CGG | 0.489046 | 5.3:+545355 | None:intergenic |
| TGATAAAAGAATTCTTGAAC+TGG | 0.493707 | 5.3:-547493 | MS.gene024958:CDS |
| CTTTCCTCAACAAAACTTGG+AGG | 0.498930 | 5.3:+543809 | None:intergenic |
| TGTGAGCAGATGCTGGATAA+GGG | 0.498978 | 5.3:-545801 | MS.gene024958:CDS |
| TTCTTTCCAAGGGCAGTTTG+AGG | 0.499533 | 5.3:-543948 | MS.gene024958:CDS |
| TTGGCCTGCCCTTTAACATA+GGG | 0.499608 | 5.3:+547391 | None:intergenic |
| GAATAACGGGTCTAATCTCC+TGG | 0.502177 | 5.3:-543915 | MS.gene024958:CDS |
| CTCAAACAGACCTTTCTGAT+AGG | 0.502889 | 5.3:+546017 | None:intergenic |
| AAGCACATGTGAGCAGATGC+TGG | 0.504634 | 5.3:-545808 | MS.gene024958:CDS |
| CACTAGCGCGAAAGCAGGAA+TGG | 0.504927 | 5.3:-547793 | MS.gene024958:CDS |
| AACAGACCTTTCTGATAGGA+AGG | 0.506790 | 5.3:+546021 | None:intergenic |
| ATCTGTGTGCCTACCGTCAA+GGG | 0.510405 | 5.3:+544284 | None:intergenic |
| TGCAAACTTCAGTTATATCA+AGG | 0.514648 | 5.3:+546977 | None:intergenic |
| TGATAGCCCTAATTATTGTC+AGG | 0.515465 | 5.3:-543888 | MS.gene024958:CDS |
| ACCTTAGCAAGTAAGCGATT+CGG | 0.530222 | 5.3:+546777 | None:intergenic |
| ACTGGTCTCACATGTAGTGC+TGG | 0.531695 | 5.3:-546807 | MS.gene024958:CDS |
| CCATGCCTGGGTTTATTGCA+CGG | 0.534158 | 5.3:-547219 | MS.gene024958:CDS |
| ACTGGAACAAAGATTAACTC+TGG | 0.536947 | 5.3:+547187 | None:intergenic |
| CATGTAACCAAATCCTTGAA+AGG | 0.537054 | 5.3:+547457 | None:intergenic |
| AATTAGGGCTATCATCCTCC+AGG | 0.540562 | 5.3:+543897 | None:intergenic |
| AGTGGATGTACAGAGGTTCT+GGG | 0.544383 | 5.3:-543977 | MS.gene024958:CDS |
| TTTGAATCGGAACAGATGCT+TGG | 0.545838 | 5.3:+543726 | None:intergenic |
| GACATGGTGCCAACAGCCAT+TGG | 0.549036 | 5.3:+547372 | None:intergenic |
| AAGCATCTGTTCCGATTCAA+AGG | 0.554546 | 5.3:-543724 | MS.gene024958:intron |
| TTGGTAATAGTCTTCTGTGT+AGG | 0.555664 | 5.3:+544399 | None:intergenic |
| TATGTTAAAGGGCAGGCCAA+TGG | 0.557242 | 5.3:-547388 | MS.gene024958:CDS |
| GAAAACTGATGGTGCAGAGA+AGG | 0.558906 | 5.3:-544190 | MS.gene024958:intron |
| GTAACCCTATGTTAAAGGGC+AGG | 0.561428 | 5.3:-547395 | MS.gene024958:CDS |
| GGGTTTAGGTTTGGGAAAGA+CGG | 0.563053 | 5.3:-545435 | MS.gene024958:CDS |
| GTTTACACTAGCGCGAAAGC+AGG | 0.568256 | 5.3:-547798 | MS.gene024958:CDS |
| GGAAACCTCATAATTGGCAG+TGG | 0.570621 | 5.3:+547341 | None:intergenic |
| CTTAGAGTATCACAGTTTAG+TGG | 0.571256 | 5.3:-544447 | MS.gene024958:CDS |
| TCCACTCTTTGGAAAACTGA+TGG | 0.575363 | 5.3:-544201 | MS.gene024958:CDS |
| ATCCTCCCTTCCTATCAGAA+AGG | 0.575436 | 5.3:-546027 | MS.gene024958:intron |
| TGGGATCAACTTCTTTCCAA+GGG | 0.581757 | 5.3:-543958 | MS.gene024958:CDS |
| AGCGCGAAAGCAGGAATGGA+AGG | 0.585360 | 5.3:-547789 | MS.gene024958:CDS |
| TCAGACATAAACAAGCCAAA+TGG | 0.586732 | 5.3:-546095 | MS.gene024958:CDS |
| TCTCACATGTAGTGCTGGAG+TGG | 0.588105 | 5.3:-546802 | MS.gene024958:CDS |
| GATCTGTGTGCCTACCGTCA+AGG | 0.594862 | 5.3:+544283 | None:intergenic |
| AAGGGCAGGCCAATGGCTGT+TGG | 0.602052 | 5.3:-547381 | MS.gene024958:CDS |
| CAAAAGTTGTCTCACAAGGA+GGG | 0.606022 | 5.3:-543523 | MS.gene024958:CDS |
| TATGATCCGAATTTCATCGC+TGG | 0.611918 | 5.3:-547018 | MS.gene024958:CDS |
| GACTATAAATGTTCACTCTG+TGG | 0.619008 | 5.3:-543842 | MS.gene024958:CDS |
| GACCTTTCTGATAGGAAGGG+AGG | 0.620126 | 5.3:+546025 | None:intergenic |
| GTCGGCGTTTATGAAGAGAC+TGG | 0.621129 | 5.3:-546825 | MS.gene024958:CDS |
| CCGTGCAATAAACCCAGGCA+TGG | 0.621698 | 5.3:+547219 | None:intergenic |
| GAAGCAAAAGTTGTCTCACA+AGG | 0.626097 | 5.3:-543527 | MS.gene024958:CDS |
| GCAAAAGTTGTCTCACAAGG+AGG | 0.627588 | 5.3:-543524 | MS.gene024958:CDS |
| AGCTTCCGTGCAATAAACCC+AGG | 0.632231 | 5.3:+547214 | None:intergenic |
| ACAGACCTTTCTGATAGGAA+GGG | 0.643641 | 5.3:+546022 | None:intergenic |
| TGGGAAGCGATGATAATCGA+TGG | 0.648696 | 5.3:-547836 | MS.gene024958:CDS |
| GGCAGTGGATATCATAGACA+TGG | 0.648981 | 5.3:+547356 | None:intergenic |
| GGAAAAGTATCAGTAATGAG+AGG | 0.653557 | 5.3:-545391 | MS.gene024958:CDS |
| ATTGCTCAAGAAATCAGAGT+CGG | 0.667415 | 5.3:-546843 | MS.gene024958:CDS |
| CAGTTTAGTGGACAAAAGTG+TGG | 0.667576 | 5.3:-544435 | MS.gene024958:CDS |
| CTGTATCAGTGACAAAGTCG+TGG | 0.672041 | 5.3:+544319 | None:intergenic |
| TAACCACAGTGGATGTACAG+AGG | 0.705399 | 5.3:-543984 | MS.gene024958:CDS |
| TAACGGGTCTAATCTCCTGG+AGG | 0.717537 | 5.3:-543912 | MS.gene024958:CDS |
| TGAAAGTCATAACAGCCAAG+CGG | 0.719674 | 5.3:+546051 | None:intergenic |
| TGATAGTGTTGACAGATTGG+GGG | 0.759194 | 5.3:-545876 | MS.gene024958:intron |
| GAACCTCTGTACATCCACTG+TGG | 0.781808 | 5.3:+543981 | None:intergenic |
| GATGCAAGTTCTAACCACAG+TGG | 0.797600 | 5.3:-543995 | MS.gene024958:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAACTTCTTAATTT+AGG | - | chr5.3:543757-543776 | MS.gene024958:CDS | 10.0% |
| !! | ATTAATAACTTCTTAATTTA+GGG | - | chr5.3:543758-543777 | MS.gene024958:CDS | 10.0% |
| !! | AAAATTATATAAAAGGTAAC+TGG | + | chr5.3:544857-544876 | None:intergenic | 15.0% |
| !! | ATTATGATAAGGTAAATTAT+TGG | - | chr5.3:546418-546437 | MS.gene024958:intron | 15.0% |
| !! | GGCTAAAAAAATTATATAAA+AGG | + | chr5.3:544864-544883 | None:intergenic | 15.0% |
| !!! | AAAAAAAATAATACCTTTTC+TGG | + | chr5.3:544194-544213 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTGATTATGATA+AGG | - | chr5.3:546407-546426 | MS.gene024958:intron | 15.0% |
| !!! | TTTTTAAATGAAATACATTG+AGG | - | chr5.3:544697-544716 | MS.gene024958:CDS | 15.0% |
| !! | AAATGTCATATGTTAAAAGA+AGG | + | chr5.3:545833-545852 | None:intergenic | 20.0% |
| !! | AATGTATAAGTTATCCAAAT+TGG | + | chr5.3:544925-544944 | None:intergenic | 20.0% |
| !! | ATGTATAAGTTATCCAAATT+GGG | + | chr5.3:544924-544943 | None:intergenic | 20.0% |
| !! | ATTTACTAGATAACACTAAA+AGG | - | chr5.3:544947-544966 | MS.gene024958:intron | 20.0% |
| !! | CATGATAAAATGAAAAAAAC+TGG | + | chr5.3:544780-544799 | None:intergenic | 20.0% |
| !! | CTAACAAAAAAATGATCAAT+GGG | + | chr5.3:547833-547852 | None:intergenic | 20.0% |
| !! | GCCAGTTATTATAAAATTAT+TGG | - | chr5.3:545346-545365 | MS.gene024958:CDS | 20.0% |
| !! | TCATTTATCACATTATCAAA+AGG | - | chr5.3:543695-543714 | MS.gene024958:intron | 20.0% |
| !! | TTTACTAGATAACACTAAAA+GGG | - | chr5.3:544948-544967 | MS.gene024958:intron | 20.0% |
| !!! | AGCTTTGTGTTAAAATATAT+AGG | - | chr5.3:544984-545003 | MS.gene024958:CDS | 20.0% |
| !!! | ATTGAAAATTTGAAATCTAC+CGG | + | chr5.3:546041-546060 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGGGAAAAAAAG+AGG | + | chr5.3:544446-544465 | None:intergenic | 20.0% |
| !!! | CAGTTATTTTTTATCTTTCA+GGG | - | chr5.3:546011-546030 | MS.gene024958:intron | 20.0% |
| !!! | CATTGATCATTTTTTTGTTA+GGG | - | chr5.3:547832-547851 | MS.gene024958:CDS | 20.0% |
| !!! | CTACATATTCCATTTTTAAA+GGG | + | chr5.3:544457-544476 | None:intergenic | 20.0% |
| !!! | GCCAATAATTTTATAATAAC+TGG | + | chr5.3:545350-545369 | None:intergenic | 20.0% |
| !!! | TATATGTTTTACCTTTGAAT+CGG | + | chr5.3:547610-547629 | None:intergenic | 20.0% |
| !!! | TCAATCACTTTTAATTAGAA+AGG | + | chr5.3:545427-545446 | None:intergenic | 20.0% |
| !!! | TCAGTTATTTTTTATCTTTC+AGG | - | chr5.3:546010-546029 | MS.gene024958:intron | 20.0% |
| !!! | TCTACATATTCCATTTTTAA+AGG | + | chr5.3:544458-544477 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTCCCTTTAAAAA+TGG | - | chr5.3:544445-544464 | MS.gene024958:CDS | 20.0% |
| !!! | TTTTTTCAGCATCATTTAAA+TGG | - | chr5.3:545607-545626 | MS.gene024958:intron | 20.0% |
| ! | AAATACACAATCTATAGGTT+CGG | - | chr5.3:546578-546597 | MS.gene024958:intron | 25.0% |
| ! | AACAAATGATTACCATCAAA+AGG | + | chr5.3:547080-547099 | None:intergenic | 25.0% |
| ! | AAGAGGTTTAATACATTTGA+AGG | + | chr5.3:544429-544448 | None:intergenic | 25.0% |
| ! | AATAAAAAGAAAACACCAAG+TGG | + | chr5.3:544678-544697 | None:intergenic | 25.0% |
| ! | AATTAGTAATGCGTAAACAT+TGG | + | chr5.3:547258-547277 | None:intergenic | 25.0% |
| ! | AGGAAAAAAATGTGAATAAC+GGG | - | chr5.3:547392-547411 | MS.gene024958:CDS | 25.0% |
| ! | ATCATTTCCTGACAATAATT+AGG | + | chr5.3:547442-547461 | None:intergenic | 25.0% |
| ! | ATCGCTACTTAGAAAAATAA+GGG | + | chr5.3:547174-547193 | None:intergenic | 25.0% |
| ! | ATTACCAATTTCATTACTTC+AGG | - | chr5.3:546936-546955 | MS.gene024958:intron | 25.0% |
| ! | ATTGTTTATGAAATGAGCAA+AGG | - | chr5.3:543579-543598 | MS.gene024958:intron | 25.0% |
| ! | CCAACAATAAAACAAGTTAA+CGG | + | chr5.3:546720-546739 | None:intergenic | 25.0% |
| ! | CCTAACAAAAAAATGATCAA+TGG | + | chr5.3:547834-547853 | None:intergenic | 25.0% |
| ! | CGATTGAAGCTTATAATATA+TGG | + | chr5.3:544010-544029 | None:intergenic | 25.0% |
| ! | CTAAGAAATACACAATCTAT+AGG | - | chr5.3:546573-546592 | MS.gene024958:intron | 25.0% |
| ! | GAGGAAAAAAATGTGAATAA+CGG | - | chr5.3:547391-547410 | MS.gene024958:CDS | 25.0% |
| ! | TAAATGAAATACATTGAGGA+AGG | - | chr5.3:544701-544720 | MS.gene024958:CDS | 25.0% |
| ! | TACAATTGCAACAAAATAGT+GGG | - | chr5.3:547654-547673 | MS.gene024958:intron | 25.0% |
| ! | TATCGCTACTTAGAAAAATA+AGG | + | chr5.3:547175-547194 | None:intergenic | 25.0% |
| ! | TCATTTCCTGACAATAATTA+GGG | + | chr5.3:547441-547460 | None:intergenic | 25.0% |
| ! | TGATAAAAGAATTCTTGAAC+TGG | - | chr5.3:543827-543846 | MS.gene024958:CDS | 25.0% |
| ! | TGGAAAACAGAAAATCATAA+AGG | + | chr5.3:544760-544779 | None:intergenic | 25.0% |
| ! | TTAAGTAACCCTATGTTAAA+GGG | - | chr5.3:543921-543940 | MS.gene024958:CDS | 25.0% |
| ! | TTACAATTGCAACAAAATAG+TGG | - | chr5.3:547653-547672 | MS.gene024958:intron | 25.0% |
| ! | TTACTAGATAACACTAAAAG+GGG | - | chr5.3:544949-544968 | MS.gene024958:intron | 25.0% |
| ! | TTTAAGTAACCCTATGTTAA+AGG | - | chr5.3:543920-543939 | MS.gene024958:CDS | 25.0% |
| !! | AATATTTTCAGAATGAGGAA+CGG | - | chr5.3:543607-543626 | MS.gene024958:intron | 25.0% |
| !! | AGATATACAGGTAAAAGTTT+TGG | + | chr5.3:544885-544904 | None:intergenic | 25.0% |
| !! | ATCCAAATATTTTCAGAATG+AGG | - | chr5.3:543602-543621 | MS.gene024958:intron | 25.0% |
| !! | ATTTGCTTTGTCTATTGATT+CGG | + | chr5.3:547769-547788 | None:intergenic | 25.0% |
| !! | GTAAGTTTAGCTTCATATAA+AGG | - | chr5.3:545745-545764 | MS.gene024958:intron | 25.0% |
| !! | GTTTTTCCTTTAATTACTGA+TGG | - | chr5.3:544242-544261 | MS.gene024958:CDS | 25.0% |
| !! | TATGTTTATGTCTTTGAAAG+AGG | - | chr5.3:545399-545418 | MS.gene024958:CDS | 25.0% |
| !! | TGATAATGTGATAAATGAGA+GGG | + | chr5.3:543693-543712 | None:intergenic | 25.0% |
| !! | TTCCTCATTCTGAAAATATT+TGG | + | chr5.3:543607-543626 | None:intergenic | 25.0% |
| !! | TTGACAAAGAAAAAGTACAA+AGG | - | chr5.3:543556-543575 | MS.gene024958:CDS | 25.0% |
| !!! | AAAAGAACTACTTTTCCTAT+TGG | + | chr5.3:546967-546986 | None:intergenic | 25.0% |
| !!! | CATATTTTGAAGGAAGTTTT+TGG | - | chr5.3:545486-545505 | MS.gene024958:intron | 25.0% |
| !!! | CCATTGATCATTTTTTTGTT+AGG | - | chr5.3:547831-547850 | MS.gene024958:CDS | 25.0% |
| !!! | TATTTTTTTCTTCTCCTCTT+AGG | - | chr5.3:546849-546868 | MS.gene024958:intron | 25.0% |
| !!! | TGTCACTGATTTTTATATTC+TGG | - | chr5.3:544220-544239 | MS.gene024958:CDS | 25.0% |
| !!! | TTAACTTGTTTTATTGTTGG+CGG | - | chr5.3:546720-546739 | MS.gene024958:intron | 25.0% |
| !!! | TTGATAATGTGATAAATGAG+AGG | + | chr5.3:543694-543713 | None:intergenic | 25.0% |
| AAGCTACCATCAGTAATTAA+AGG | + | chr5.3:544251-544270 | None:intergenic | 30.0% | |
| AATCTTTCCTCAACAAAACT+TGG | + | chr5.3:547517-547536 | None:intergenic | 30.0% | |
| AATTATTAAGATGGTCCTCA+AGG | - | chr5.3:546744-546763 | MS.gene024958:intron | 30.0% | |
| AGCTTATAATATATGGACGA+AGG | + | chr5.3:544003-544022 | None:intergenic | 30.0% | |
| ATTGTAAAAACCACGACAAA+TGG | + | chr5.3:547640-547659 | None:intergenic | 30.0% | |
| CTGTCAGATTAAAATTGCAA+TGG | - | chr5.3:544400-544419 | MS.gene024958:CDS | 30.0% | |
| GATTTGCATGGTTCATTTAT+TGG | + | chr5.3:546251-546270 | None:intergenic | 30.0% | |
| GGTAAAATATACTGTCCATT+TGG | + | chr5.3:545243-545262 | None:intergenic | 30.0% | |
| TGCAAACTTCAGTTATATCA+AGG | + | chr5.3:544346-544365 | None:intergenic | 30.0% | |
| TTCTCCTGAAGTAATGAAAT+TGG | + | chr5.3:546943-546962 | None:intergenic | 30.0% | |
| ! | ATAAGGTAAATTATTGGCCT+GGG | - | chr5.3:546424-546443 | MS.gene024958:intron | 30.0% |
| ! | ATCTCCTTTTGTCTTTATAC+AGG | - | chr5.3:544054-544073 | MS.gene024958:intron | 30.0% |
| ! | CAGCAATCAAATGATTGTTT+TGG | - | chr5.3:547216-547235 | MS.gene024958:CDS | 30.0% |
| ! | GAATTCTTTTATCAGCAATC+TGG | + | chr5.3:543821-543840 | None:intergenic | 30.0% |
| ! | GACTTCACATTTTCTGTTTA+AGG | - | chr5.3:547697-547716 | MS.gene024958:intron | 30.0% |
| ! | GATTTGGTTACATGTAGATA+TGG | - | chr5.3:543872-543891 | MS.gene024958:CDS | 30.0% |
| ! | GTATACTTGTTGAAATCAAC+TGG | + | chr5.3:544154-544173 | None:intergenic | 30.0% |
| ! | TGTTGTTGATTGAGATATAC+AGG | + | chr5.3:544897-544916 | None:intergenic | 30.0% |
| ! | TTTTATCTTTCAGGGAATTC+CGG | - | chr5.3:546019-546038 | MS.gene024958:intron | 30.0% |
| !! | ATTGATAGTGTTGACAGATT+GGG | - | chr5.3:545442-545461 | MS.gene024958:CDS | 30.0% |
| !! | GGTTACTGAACATATTTTGA+AGG | - | chr5.3:545476-545495 | MS.gene024958:intron | 30.0% |
| !! | GTCAGGAAATGATAATGTTT+TGG | - | chr5.3:547449-547468 | MS.gene024958:CDS | 30.0% |
| !!! | CCGTTAACTTGTTTTATTGT+TGG | - | chr5.3:546717-546736 | MS.gene024958:intron | 30.0% |
| !!! | GCAGATTTTTTTTACTCTGT+GGG | - | chr5.3:545865-545884 | MS.gene024958:intron | 30.0% |
| !!! | GGAAATGATAATGTTTTGGT+TGG | - | chr5.3:547453-547472 | MS.gene024958:CDS | 30.0% |
| !!! | TGCAGATTTTTTTTACTCTG+TGG | - | chr5.3:545864-545883 | MS.gene024958:CDS | 30.0% |
| !!! | TTTTTTTACTCTGTGGGTTT+AGG | - | chr5.3:545871-545890 | MS.gene024958:intron | 30.0% |
| AAAAGGTAACTGGCACAATT+AGG | + | chr5.3:544847-544866 | None:intergenic | 35.0% | |
| AAATTCTGTCTTCCACTTTC+TGG | - | chr5.3:545695-545714 | MS.gene024958:intron | 35.0% | |
| ACCACATACAATGCAAAACA+AGG | + | chr5.3:545026-545045 | None:intergenic | 35.0% | |
| ACCCATATGGGAAATATGTT+TGG | + | chr5.3:544584-544603 | None:intergenic | 35.0% | |
| ACTAGCAAATGTAACCCATA+TGG | + | chr5.3:544597-544616 | None:intergenic | 35.0% | |
| ACTGGAACAAAGATTAACTC+TGG | + | chr5.3:544136-544155 | None:intergenic | 35.0% | |
| AGAAAAATAAGGGTGGAGAA+TGG | + | chr5.3:547164-547183 | None:intergenic | 35.0% | |
| AGCGCTGTTGCATAAAAAAT+TGG | - | chr5.3:545975-545994 | MS.gene024958:intron | 35.0% | |
| ATAACACTAAAAGGGGTGAT+TGG | - | chr5.3:544956-544975 | MS.gene024958:intron | 35.0% | |
| ATTGCAGTTCATCAGTTTGA+AGG | - | chr5.3:546073-546092 | MS.gene024958:CDS | 35.0% | |
| ATTGCTCAAGAAATCAGAGT+CGG | - | chr5.3:544477-544496 | MS.gene024958:intron | 35.0% | |
| CACTAAACTGTGATACTCTA+AGG | + | chr5.3:546875-546894 | None:intergenic | 35.0% | |
| CATGTAACCAAATCCTTGAA+AGG | + | chr5.3:543866-543885 | None:intergenic | 35.0% | |
| CCTATTAATCGTACTGAAAC+AGG | + | chr5.3:546688-546707 | None:intergenic | 35.0% | |
| CCTGTTTCAGTACGATTAAT+AGG | - | chr5.3:546685-546704 | MS.gene024958:intron | 35.0% | |
| CTAGCAAATGTAACCCATAT+GGG | + | chr5.3:544596-544615 | None:intergenic | 35.0% | |
| CTGCAAACATAAGATTTGCA+TGG | + | chr5.3:546263-546282 | None:intergenic | 35.0% | |
| CTTACAAACATGCCAAATAC+TGG | + | chr5.3:545730-545749 | None:intergenic | 35.0% | |
| GAGATGTTAAGAGAGAATTG+AGG | + | chr5.3:544825-544844 | None:intergenic | 35.0% | |
| GATAAGGTAAATTATTGGCC+TGG | - | chr5.3:546423-546442 | MS.gene024958:intron | 35.0% | |
| GCCAAACATATTTCCCATAT+GGG | - | chr5.3:544580-544599 | MS.gene024958:intron | 35.0% | |
| GCGCTGTTGCATAAAAAATT+GGG | - | chr5.3:545976-545995 | MS.gene024958:intron | 35.0% | |
| GCTACTTAGAAAAATAAGGG+TGG | + | chr5.3:547171-547190 | None:intergenic | 35.0% | |
| GTCTCAGATTTAGTCAGTTT+AGG | - | chr5.3:546122-546141 | MS.gene024958:intron | 35.0% | |
| TAACACTAAAAGGGGTGATT+GGG | - | chr5.3:544957-544976 | MS.gene024958:intron | 35.0% | |
| TACAGTGATTTGACCAGAAA+AGG | - | chr5.3:544178-544197 | MS.gene024958:intron | 35.0% | |
| TAGCACTTGCAAGAGAAATA+TGG | + | chr5.3:546556-546575 | None:intergenic | 35.0% | |
| TAGTGATTGTTTGATCACCT+GGG | - | chr5.3:545148-545167 | MS.gene024958:intron | 35.0% | |
| TCAACAACAGTTACCCAATT+TGG | - | chr5.3:544908-544927 | MS.gene024958:intron | 35.0% | |
| TCAGACATAAACAAGCCAAA+TGG | - | chr5.3:545225-545244 | MS.gene024958:intron | 35.0% | |
| TCATAGTATGAAATTTCCCC+AGG | + | chr5.3:545168-545187 | None:intergenic | 35.0% | |
| TGATAGCCCTAATTATTGTC+AGG | - | chr5.3:547432-547451 | MS.gene024958:CDS | 35.0% | |
| TGCAAATCTTATGTTTGCAG+CGG | - | chr5.3:546263-546282 | MS.gene024958:intron | 35.0% | |
| TGCCAAACATATTTCCCATA+TGG | - | chr5.3:544579-544598 | MS.gene024958:intron | 35.0% | |
| TGGTTTCTACAACCAGTATT+TGG | - | chr5.3:545715-545734 | MS.gene024958:intron | 35.0% | |
| TTATGTCTGAGCAAACCTAT+AGG | + | chr5.3:545215-545234 | None:intergenic | 35.0% | |
| TTTATACAGGCCAGGAAATT+TGG | - | chr5.3:544067-544086 | MS.gene024958:intron | 35.0% | |
| ! | ACTGAAAACTGCTTCTTTTG+AGG | - | chr5.3:546353-546372 | MS.gene024958:intron | 35.0% |
| ! | ACTTTTCCGAAATCTTGCTT+GGG | + | chr5.3:545917-545936 | None:intergenic | 35.0% |
| ! | CTTAGAGTATCACAGTTTAG+TGG | - | chr5.3:546873-546892 | MS.gene024958:intron | 35.0% |
| ! | TAATGAAGCTTTATCCACAG+AGG | + | chr5.3:546452-546471 | None:intergenic | 35.0% |
| ! | TACTTTTCCGAAATCTTGCT+TGG | + | chr5.3:545918-545937 | None:intergenic | 35.0% |
| ! | TATTTTACCAAATGACCGCT+TGG | - | chr5.3:545254-545273 | MS.gene024958:intron | 35.0% |
| ! | TGTATGAACATTAGTCTAGC+TGG | + | chr5.3:545633-545652 | None:intergenic | 35.0% |
| ! | TTGACATTTTGCTCTCCTAT+AGG | - | chr5.3:545197-545216 | MS.gene024958:intron | 35.0% |
| ! | TTGGTAATAGTCTTCTGTGT+AGG | + | chr5.3:546924-546943 | None:intergenic | 35.0% |
| ! | TTTGAAGCAACTCAGCAAAA+TGG | + | chr5.3:547555-547574 | None:intergenic | 35.0% |
| ! | TTTTGCTGAGTTGCTTCAAA+AGG | - | chr5.3:547555-547574 | MS.gene024958:intron | 35.0% |
| !! | ATGATTTGTTCAAGTCCCTT+GGG | - | chr5.3:546490-546509 | MS.gene024958:intron | 35.0% |
| !! | GAAACTGATTTTTCCCTTGA+CGG | - | chr5.3:547023-547042 | MS.gene024958:CDS | 35.0% |
| !! | GATTGATAGTGTTGACAGAT+TGG | - | chr5.3:545441-545460 | MS.gene024958:CDS | 35.0% |
| !! | GGAAAAGTATCAGTAATGAG+AGG | - | chr5.3:545929-545948 | MS.gene024958:intron | 35.0% |
| !! | TATGATTTGTTCAAGTCCCT+TGG | - | chr5.3:546489-546508 | MS.gene024958:intron | 35.0% |
| !! | TTGATAGTGTTGACAGATTG+GGG | - | chr5.3:545443-545462 | MS.gene024958:CDS | 35.0% |
| !!! | ATGATTGTTTTGGCTGATTG+AGG | - | chr5.3:547226-547245 | MS.gene024958:CDS | 35.0% |
| !!! | CATGTTCGTTAGTTTTTCAG+AGG | - | chr5.3:544279-544298 | MS.gene024958:CDS | 35.0% |
| !!! | TCCTTGTTTTGCATTGTATG+TGG | - | chr5.3:545022-545041 | MS.gene024958:CDS | 35.0% |
| AACAGACCTTTCTGATAGGA+AGG | + | chr5.3:545302-545321 | None:intergenic | 40.0% | |
| AAGCATCTGTTCCGATTCAA+AGG | - | chr5.3:547596-547615 | MS.gene024958:intron | 40.0% | |
| AAGTAACGCATGTGGATGTA+AGG | + | chr5.3:544646-544665 | None:intergenic | 40.0% | |
| AATCGTGTTTCTTCCAGTCA+GGG | - | chr5.3:547734-547753 | MS.gene024958:intron | 40.0% | |
| ACAGACCTTTCTGATAGGAA+GGG | + | chr5.3:545301-545320 | None:intergenic | 40.0% | |
| ACCTTAGCAAGTAAGCGATT+CGG | + | chr5.3:544546-544565 | None:intergenic | 40.0% | |
| ACTGCACTTGCACATTAATC+AGG | - | chr5.3:544726-544745 | MS.gene024958:CDS | 40.0% | |
| AGAACGAACTCCAAATTTCC+TGG | + | chr5.3:544080-544099 | None:intergenic | 40.0% | |
| AGACTACCAGCGATGAAATT+CGG | + | chr5.3:544311-544330 | None:intergenic | 40.0% | |
| AGTGATTGTTTGATCACCTG+GGG | - | chr5.3:545149-545168 | MS.gene024958:intron | 40.0% | |
| ATAGTCTTCTGTGTAGGATC+AGG | + | chr5.3:546918-546937 | None:intergenic | 40.0% | |
| ATCGACAGACATGCAAAAAG+AGG | - | chr5.3:546302-546321 | MS.gene024958:intron | 40.0% | |
| ATTACCAAAGCTCCACTCTT+TGG | - | chr5.3:547108-547127 | MS.gene024958:intron | 40.0% | |
| ATTCTCCCCAAGCAAGATTT+CGG | - | chr5.3:545908-545927 | MS.gene024958:intron | 40.0% | |
| CAAAAGTTGTCTCACAAGGA+GGG | - | chr5.3:547797-547816 | MS.gene024958:CDS | 40.0% | |
| CAACCTGATAAATACAGCAG+AGG | + | chr5.3:547288-547307 | None:intergenic | 40.0% | |
| CAGCAAGAACCCTCTTATAT+TGG | + | chr5.3:546770-546789 | None:intergenic | 40.0% | |
| CATGTGTTCCTTGTCTAAGT+TGG | - | chr5.3:546815-546834 | MS.gene024958:CDS | 40.0% | |
| CTCAAACAGACCTTTCTGAT+AGG | + | chr5.3:545306-545325 | None:intergenic | 40.0% | |
| CTCTGCTGTATTTATCAGGT+TGG | - | chr5.3:547286-547305 | MS.gene024958:intron | 40.0% | |
| CTGGCCTGTATAAAGACAAA+AGG | + | chr5.3:544061-544080 | None:intergenic | 40.0% | |
| CTTTCCTCAACAAAACTTGG+AGG | + | chr5.3:547514-547533 | None:intergenic | 40.0% | |
| GAAGCAAAAGTTGTCTCACA+AGG | - | chr5.3:547793-547812 | MS.gene024958:CDS | 40.0% | |
| GACGAAGGAAACCTCATAAT+TGG | + | chr5.3:543988-544007 | None:intergenic | 40.0% | |
| GATATCCACTGCCAATTATG+AGG | - | chr5.3:543974-543993 | MS.gene024958:CDS | 40.0% | |
| GTAGTGATTGTTTGATCACC+TGG | - | chr5.3:545147-545166 | MS.gene024958:intron | 40.0% | |
| GTTATGCACCAACTTAGACA+AGG | + | chr5.3:546826-546845 | None:intergenic | 40.0% | |
| GTTGGCGGCAATTATTAAGA+TGG | - | chr5.3:546735-546754 | MS.gene024958:intron | 40.0% | |
| TAATCGTGTTTCTTCCAGTC+AGG | - | chr5.3:547733-547752 | MS.gene024958:intron | 40.0% | |
| TATGATCCGAATTTCATCGC+TGG | - | chr5.3:544302-544321 | MS.gene024958:CDS | 40.0% | |
| TCCTCAAGGCCAATATAAGA+GGG | - | chr5.3:546758-546777 | MS.gene024958:intron | 40.0% | |
| TCGACAGACATGCAAAAAGA+GGG | - | chr5.3:546303-546322 | MS.gene024958:intron | 40.0% | |
| TGAAAGTCATAACAGCCAAG+CGG | + | chr5.3:545272-545291 | None:intergenic | 40.0% | |
| TGGGATCAACTTCTTTCCAA+GGG | - | chr5.3:547362-547381 | MS.gene024958:CDS | 40.0% | |
| TGGTTGTAGAAACCAGAAAG+TGG | + | chr5.3:545710-545729 | None:intergenic | 40.0% | |
| TGTCCTCTGCTGTATTTATC+AGG | - | chr5.3:547282-547301 | MS.gene024958:intron | 40.0% | |
| TTACTTCAGGAGAAGCCAAT+AGG | - | chr5.3:546949-546968 | MS.gene024958:intron | 40.0% | |
| TTTGAATCGGAACAGATGCT+TGG | + | chr5.3:547597-547616 | None:intergenic | 40.0% | |
| ! | ACCATCAGTTTTCCAAAGAG+TGG | + | chr5.3:547123-547142 | None:intergenic | 40.0% |
| ! | CAGTTTAGTGGACAAAAGTG+TGG | - | chr5.3:546885-546904 | MS.gene024958:intron | 40.0% |
| ! | CTTTTCCGAAATCTTGCTTG+GGG | + | chr5.3:545916-545935 | None:intergenic | 40.0% |
| ! | CTTTTGTCTTTATACAGGCC+AGG | - | chr5.3:544059-544078 | MS.gene024958:intron | 40.0% |
| ! | GATAGCAGAGATCCTTTTGA+TGG | - | chr5.3:547065-547084 | MS.gene024958:intron | 40.0% |
| ! | GTGAGACAACTTTTGCTTCT+TGG | + | chr5.3:547792-547811 | None:intergenic | 40.0% |
| ! | TACTCTGTGGGTTTAGGTTT+GGG | - | chr5.3:545877-545896 | MS.gene024958:intron | 40.0% |
| ! | TCCACTCTTTGGAAAACTGA+TGG | - | chr5.3:547119-547138 | MS.gene024958:intron | 40.0% |
| ! | TTACTCTGTGGGTTTAGGTT+TGG | - | chr5.3:545876-545895 | MS.gene024958:intron | 40.0% |
| ! | TTTTCCAAAGAGTGGAGCTT+TGG | + | chr5.3:547115-547134 | None:intergenic | 40.0% |
| !! | TGATAGTGTTGACAGATTGG+GGG | - | chr5.3:545444-545463 | MS.gene024958:CDS | 40.0% |
| !! | TGATTTGTTCAAGTCCCTTG+GGG | - | chr5.3:546491-546510 | MS.gene024958:intron | 40.0% |
| !! | TGCAGTTTGTTACACATGCA+TGG | - | chr5.3:546146-546165 | MS.gene024958:intron | 40.0% |
| !!! | ACTTCCTCCAAGTTTTGTTG+AGG | - | chr5.3:547507-547526 | MS.gene024958:intron | 40.0% |
| !!! | CTTTTTTCTCAGTCAACAGC+AGG | - | chr5.3:545558-545577 | MS.gene024958:intron | 40.0% |
| !!! | TTTTTTCCTCAAACTGCCCT+TGG | + | chr5.3:547381-547400 | None:intergenic | 40.0% |
| AAACCACGACAAATGGTACG+AGG | + | chr5.3:547633-547652 | None:intergenic | 45.0% | |
| AAGCGTAGAAGTAACGCATG+TGG | + | chr5.3:544654-544673 | None:intergenic | 45.0% | |
| AATTAGGGCTATCATCCTCC+AGG | + | chr5.3:547426-547445 | None:intergenic | 45.0% | |
| ACATGACACATATCCCCCAA+GGG | + | chr5.3:546508-546527 | None:intergenic | 45.0% | |
| AGAAAGTCACTGTCGCAACT+AGG | + | chr5.3:545379-545398 | None:intergenic | 45.0% | |
| AGTGGATGTACAGAGGTTCT+GGG | - | chr5.3:547343-547362 | MS.gene024958:intron | 45.0% | |
| ATAACAGCCAAGCGGTCATT+TGG | + | chr5.3:545264-545283 | None:intergenic | 45.0% | |
| ATACCTCGTACCATTTGTCG+TGG | - | chr5.3:547627-547646 | MS.gene024958:intron | 45.0% | |
| ATCCTCCCTTCCTATCAGAA+AGG | - | chr5.3:545293-545312 | MS.gene024958:intron | 45.0% | |
| ATGCAAAAAGAGGGTCTGCA+TGG | - | chr5.3:546312-546331 | MS.gene024958:intron | 45.0% | |
| ATGTGAGCAGATGCTGGATA+AGG | - | chr5.3:545518-545537 | MS.gene024958:intron | 45.0% | |
| CTGGGATCAACTTCTTTCCA+AGG | - | chr5.3:547361-547380 | MS.gene024958:CDS | 45.0% | |
| CTGTATCAGTGACAAAGTCG+TGG | + | chr5.3:547004-547023 | None:intergenic | 45.0% | |
| GAATTTCATCGCTGGTAGTC+TGG | - | chr5.3:544310-544329 | MS.gene024958:CDS | 45.0% | |
| GCAAAAGTTGTCTCACAAGG+AGG | - | chr5.3:547796-547815 | MS.gene024958:CDS | 45.0% | |
| GGAAACCTCATAATTGGCAG+TGG | + | chr5.3:543982-544001 | None:intergenic | 45.0% | |
| GGCAGTGGATATCATAGACA+TGG | + | chr5.3:543967-543986 | None:intergenic | 45.0% | |
| GTAACCCTATGTTAAAGGGC+AGG | - | chr5.3:543925-543944 | MS.gene024958:CDS | 45.0% | |
| GTCCTCAAGGCCAATATAAG+AGG | - | chr5.3:546757-546776 | MS.gene024958:intron | 45.0% | |
| TAACCACAGTGGATGTACAG+AGG | - | chr5.3:547336-547355 | MS.gene024958:intron | 45.0% | |
| TATGTTAAAGGGCAGGCCAA+TGG | - | chr5.3:543932-543951 | MS.gene024958:CDS | 45.0% | |
| TGCAAAAAGAGGGTCTGCAT+GGG | - | chr5.3:546313-546332 | MS.gene024958:intron | 45.0% | |
| TGGGAAGCGATGATAATCGA+TGG | - | chr5.3:543484-543503 | MS.gene024958:CDS | 45.0% | |
| TGTGAGCAGATGCTGGATAA+GGG | - | chr5.3:545519-545538 | MS.gene024958:intron | 45.0% | |
| TTACTTCTACGCTTGCCACT+TGG | - | chr5.3:544660-544679 | MS.gene024958:CDS | 45.0% | |
| TTCTTTCCAAGGGCAGTTTG+AGG | - | chr5.3:547372-547391 | MS.gene024958:CDS | 45.0% | |
| TTGGCCTGCCCTTTAACATA+GGG | + | chr5.3:543932-543951 | None:intergenic | 45.0% | |
| ! | ACCGAATCGCTTACTTGCTA+AGG | - | chr5.3:544542-544561 | MS.gene024958:intron | 45.0% |
| ! | ATTGGCCTGCCCTTTAACAT+AGG | + | chr5.3:543933-543952 | None:intergenic | 45.0% |
| ! | CTGATTTTTCCCTTGACGGT+AGG | - | chr5.3:547027-547046 | MS.gene024958:CDS | 45.0% |
| ! | GAAAACTGATGGTGCAGAGA+AGG | - | chr5.3:547130-547149 | MS.gene024958:intron | 45.0% |
| ! | GATGCAAGTTCTAACCACAG+TGG | - | chr5.3:547325-547344 | MS.gene024958:intron | 45.0% |
| ! | GATTTGTTCAAGTCCCTTGG+GGG | - | chr5.3:546492-546511 | MS.gene024958:intron | 45.0% |
| ! | GGGTTTAGGTTTGGGAAAGA+CGG | - | chr5.3:545885-545904 | MS.gene024958:intron | 45.0% |
| !! | ACCCTCTTATATTGGCCTTG+AGG | + | chr5.3:546762-546781 | None:intergenic | 45.0% |
| !! | GAATAACGGGTCTAATCTCC+TGG | - | chr5.3:547405-547424 | MS.gene024958:CDS | 45.0% |
| !! | GTGATACTCTAAGGCCTAAG+AGG | + | chr5.3:546866-546885 | None:intergenic | 45.0% |
| AAGCACATGTGAGCAGATGC+TGG | - | chr5.3:545512-545531 | MS.gene024958:intron | 50.0% | |
| AAGCTTCTCGCGACCTTTCA+AGG | - | chr5.3:543850-543869 | MS.gene024958:CDS | 50.0% | |
| AGCTTCCGTGCAATAAACCC+AGG | + | chr5.3:544109-544128 | None:intergenic | 50.0% | |
| ATCTGTGTGCCTACCGTCAA+GGG | + | chr5.3:547039-547058 | None:intergenic | 50.0% | |
| ATGCAACAGCGCTTCATCCT+CGG | + | chr5.3:545968-545987 | None:intergenic | 50.0% | |
| CACATGACACATATCCCCCA+AGG | + | chr5.3:546509-546528 | None:intergenic | 50.0% | |
| CAGTGGATGTACAGAGGTTC+TGG | - | chr5.3:547342-547361 | MS.gene024958:intron | 50.0% | |
| CCATGCCTGGGTTTATTGCA+CGG | - | chr5.3:544101-544120 | MS.gene024958:intron | 50.0% | |
| CTCGCGACCTTTCAAGGATT+TGG | - | chr5.3:543856-543875 | MS.gene024958:CDS | 50.0% | |
| CTTGGGGGATATGTGTCATG+TGG | - | chr5.3:546507-546526 | MS.gene024958:intron | 50.0% | |
| GAACCTCTGTACATCCACTG+TGG | + | chr5.3:547342-547361 | None:intergenic | 50.0% | |
| GACCTTTCTGATAGGAAGGG+AGG | + | chr5.3:545298-545317 | None:intergenic | 50.0% | |
| GTCGGCGTTTATGAAGAGAC+TGG | - | chr5.3:544495-544514 | MS.gene024958:intron | 50.0% | |
| GTTTACACTAGCGCGAAAGC+AGG | - | chr5.3:543522-543541 | MS.gene024958:CDS | 50.0% | |
| ! | ACTGGTCTCACATGTAGTGC+TGG | - | chr5.3:544513-544532 | MS.gene024958:intron | 50.0% |
| ! | TAACGGGTCTAATCTCCTGG+AGG | - | chr5.3:547408-547427 | MS.gene024958:CDS | 50.0% |
| ! | TCTCACATGTAGTGCTGGAG+TGG | - | chr5.3:544518-544537 | MS.gene024958:intron | 50.0% |
| ! | TGTTGACAGATTGGGGGCAT+CGG | - | chr5.3:545450-545469 | MS.gene024958:CDS | 50.0% |
| !! | CTTTATCCACAGAGGTACCC+AGG | + | chr5.3:546444-546463 | None:intergenic | 50.0% |
| AGCGCGAAAGCAGGAATGGA+AGG | - | chr5.3:543531-543550 | MS.gene024958:CDS | 55.0% | |
| CACTAGCGCGAAAGCAGGAA+TGG | - | chr5.3:543527-543546 | MS.gene024958:CDS | 55.0% | |
| CCGTGCAATAAACCCAGGCA+TGG | + | chr5.3:544104-544123 | None:intergenic | 55.0% | |
| GAGTTCGTTCTGCCATGCCT+GGG | - | chr5.3:544089-544108 | MS.gene024958:intron | 55.0% | |
| GATCTGTGTGCCTACCGTCA+AGG | + | chr5.3:547040-547059 | None:intergenic | 55.0% | |
| ! | GACATGGTGCCAACAGCCAT+TGG | + | chr5.3:543951-543970 | None:intergenic | 55.0% |
| ! | GAGGACGTTTTCTGCAACCG+AGG | - | chr5.3:545948-545967 | MS.gene024958:intron | 55.0% |
| ! | TATTGGCCTGGGTACCTCTG+TGG | - | chr5.3:546435-546454 | MS.gene024958:intron | 55.0% |
| !! | ACAGATTGGGGGCATCGGTA+AGG | - | chr5.3:545455-545474 | MS.gene024958:intron | 55.0% |
| AAGGGCAGGCCAATGGCTGT+TGG | - | chr5.3:543939-543958 | MS.gene024958:CDS | 60.0% | |
| GGAGTTCGTTCTGCCATGCC+TGG | - | chr5.3:544088-544107 | MS.gene024958:intron | 60.0% | |
| ! | TCGGTGCTTCTGACCCTGAC+TGG | + | chr5.3:547750-547769 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 543483 | 547859 | 543483 | ID=MS.gene024958 |
| chr5.3 | mRNA | 543483 | 547859 | 543483 | ID=MS.gene024958.t1;Parent=MS.gene024958 |
| chr5.3 | exon | 547773 | 547859 | 547773 | ID=MS.gene024958.t1.exon1;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 547773 | 547859 | 547773 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 547347 | 547520 | 547347 | ID=MS.gene024958.t1.exon2;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 547347 | 547520 | 547347 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 547143 | 547266 | 547143 | ID=MS.gene024958.t1.exon3;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 547143 | 547266 | 547143 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 546951 | 547051 | 546951 | ID=MS.gene024958.t1.exon4;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 546951 | 547051 | 546951 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 546779 | 546865 | 546779 | ID=MS.gene024958.t1.exon5;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 546779 | 546865 | 546779 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 546028 | 546123 | 546028 | ID=MS.gene024958.t1.exon6;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 546028 | 546123 | 546028 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 545763 | 545883 | 545763 | ID=MS.gene024958.t1.exon7;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 545763 | 545883 | 545763 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 545345 | 545473 | 545345 | ID=MS.gene024958.t1.exon8;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 545345 | 545473 | 545345 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 544968 | 545059 | 544968 | ID=MS.gene024958.t1.exon9;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 544968 | 545059 | 544968 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 544636 | 544747 | 544636 | ID=MS.gene024958.t1.exon10;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 544636 | 544747 | 544636 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 544191 | 544471 | 544191 | ID=MS.gene024958.t1.exon11;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 544191 | 544471 | 544191 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 543725 | 544038 | 543725 | ID=MS.gene024958.t1.exon12;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 543725 | 544038 | 543725 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| chr5.3 | exon | 543483 | 543591 | 543483 | ID=MS.gene024958.t1.exon13;Parent=MS.gene024958.t1 |
| chr5.3 | CDS | 543483 | 543591 | 543483 | ID=cds.MS.gene024958.t1;Parent=MS.gene024958.t1 |
| Gene Sequence |
| Protein sequence |
