Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024978.t1 | XP_013453291.1 | 93.5 | 432 | 21 | 5 | 1 | 427 | 1 | 430 | 1.80E-225 | 791.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024978.t1 | Q9LT72 | 53.0 | 436 | 174 | 7 | 16 | 427 | 41 | 469 | 9.3e-117 | 421.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024978.t1 | G7ZV99 | 93.5 | 432 | 21 | 5 | 1 | 427 | 1 | 430 | 1.3e-225 | 791.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49091 | MS.gene024978 | PPI |
| MS.gene024978 | MS.gene41434 | PPI |
| MS.gene024978 | MS.gene34495 | PPI |
| MS.gene006293 | MS.gene024978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024978.t1 | MTR_5g004910 | 93.056 | 432 | 23 | 5 | 1 | 427 | 1 | 430 | 0.0 | 789 |
| MS.gene024978.t1 | MTR_5g004910 | 85.185 | 432 | 17 | 5 | 1 | 427 | 1 | 390 | 0.0 | 723 |
| MS.gene024978.t1 | MTR_7g029385 | 36.784 | 454 | 251 | 10 | 3 | 427 | 85 | 531 | 3.97e-86 | 273 |
| MS.gene024978.t1 | MTR_1g095580 | 31.278 | 227 | 138 | 10 | 137 | 352 | 97 | 316 | 1.34e-13 | 72.0 |
| MS.gene024978.t1 | MTR_1g095580 | 33.495 | 206 | 117 | 11 | 137 | 329 | 97 | 295 | 2.33e-13 | 70.9 |
| MS.gene024978.t1 | MTR_1g095580 | 33.495 | 206 | 117 | 11 | 137 | 329 | 97 | 295 | 3.30e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024978.t1 | AT3G19440 | 52.752 | 436 | 175 | 7 | 16 | 427 | 41 | 469 | 1.15e-141 | 413 |
| MS.gene024978.t1 | AT3G19440 | 50.831 | 301 | 124 | 4 | 16 | 292 | 41 | 341 | 1.54e-93 | 285 |
| MS.gene024978.t1 | AT1G78910 | 41.667 | 348 | 193 | 4 | 89 | 427 | 20 | 366 | 2.80e-91 | 281 |
| MS.gene024978.t1 | AT1G78910 | 40.054 | 372 | 213 | 4 | 65 | 427 | 105 | 475 | 4.87e-90 | 281 |
| MS.gene024978.t1 | AT1G76050 | 28.761 | 226 | 109 | 8 | 137 | 327 | 150 | 358 | 5.15e-13 | 70.9 |
Find 106 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGTGCTTGAGATATAT+TGG | 0.249374 | 5.3:+386116 | None:intergenic |
| CCACCTTGCACTGGCATTCC+AGG | 0.274384 | 5.3:+388118 | None:intergenic |
| TGCTCCCCTTATTCAAATTA+AGG | 0.275216 | 5.3:+386190 | None:intergenic |
| GTGTTAGGTACACCGATAAT+TGG | 0.277960 | 5.3:-386321 | MS.gene024978:CDS |
| AATTTGTTGTTTAACAGAAT+TGG | 0.298990 | 5.3:+388249 | None:intergenic |
| GACGAAAGAGTTTATGGATA+AGG | 0.301927 | 5.3:+388371 | None:intergenic |
| CTTCGACCCCTGCCCTGAAA+TGG | 0.310329 | 5.3:-388426 | MS.gene024978:CDS |
| AAGGAAGAGGCACTCCCTTT+TGG | 0.322488 | 5.3:-386213 | MS.gene024978:CDS |
| GAAGTGAGAGATTCATGTTT+GGG | 0.323404 | 5.3:+388211 | None:intergenic |
| CGGTATTGGGCATTGGTTCT+TGG | 0.326843 | 5.3:-387793 | MS.gene024978:CDS |
| ATTTGTTGTTTAACAGAATT+GGG | 0.355318 | 5.3:+388250 | None:intergenic |
| ACGAAAGAGTTTATGGATAA+GGG | 0.356956 | 5.3:+388372 | None:intergenic |
| TTTGGCCTTAATTTGAATAA+GGG | 0.361194 | 5.3:-386195 | MS.gene024978:CDS |
| TGTTAGGTACACCGATAATT+GGG | 0.365218 | 5.3:-386320 | MS.gene024978:CDS |
| ATGCCCAATACCGTCTTTGT+AGG | 0.365936 | 5.3:+387803 | None:intergenic |
| TGCAGTGCTTGAGATATATT+GGG | 0.367867 | 5.3:+386117 | None:intergenic |
| AATCCTACAAAGACGGTATT+GGG | 0.380224 | 5.3:-387806 | MS.gene024978:CDS |
| TGGGAGCGGAAGATGGAAAA+TGG | 0.387078 | 5.3:-388501 | MS.gene024978:CDS |
| AGAAGTGAGAGATTCATGTT+TGG | 0.393607 | 5.3:+388210 | None:intergenic |
| AACATGATAACAAGTTCAAA+AGG | 0.395586 | 5.3:-388318 | MS.gene024978:CDS |
| TAAACTCTTTCGTCTAAAAC+AGG | 0.401047 | 5.3:-388362 | MS.gene024978:CDS |
| ATAATTGGGGACTACAAGTA+TGG | 0.402405 | 5.3:-386306 | MS.gene024978:CDS |
| CTTGGATGTCCTAGACGTTC+AGG | 0.404141 | 5.3:-387775 | MS.gene024978:CDS |
| ACAGTTTGATTTGTCTAATC+CGG | 0.412494 | 5.3:-386259 | MS.gene024978:CDS |
| AACATCGTATAACCCATTTC+AGG | 0.413289 | 5.3:+388413 | None:intergenic |
| GAATCCTACAAAGACGGTAT+TGG | 0.413483 | 5.3:-387807 | MS.gene024978:CDS |
| GTCATCTTCGGCGGTGGGAG+CGG | 0.414515 | 5.3:-388515 | MS.gene024978:CDS |
| TGTTATCATGTTGTTGTTGT+GGG | 0.414635 | 5.3:+388329 | None:intergenic |
| TACTTGTAGTCCCCAATTAT+CGG | 0.434618 | 5.3:+386309 | None:intergenic |
| AGACTAGACAGAGATTGTTC+TGG | 0.437828 | 5.3:-388013 | MS.gene024978:CDS |
| CGGAGTCATTAATGCTCCAC+TGG | 0.441021 | 5.3:-387752 | MS.gene024978:CDS |
| TTCGACCCCTGCCCTGAAAT+GGG | 0.457533 | 5.3:-388425 | MS.gene024978:CDS |
| TTGTTATCATGTTGTTGTTG+TGG | 0.457895 | 5.3:+388328 | None:intergenic |
| TCAGTTGTCATCTTCGGCGG+TGG | 0.461851 | 5.3:-388521 | MS.gene024978:CDS |
| CATTAATGCTCCACTGGGTA+AGG | 0.462981 | 5.3:-387746 | MS.gene024978:intron |
| TCGGAGCCGCCGTGAGATCA+TGG | 0.463090 | 5.3:-388555 | MS.gene024978:CDS |
| TTGGAGCTTTCCCCTTTAAC+CGG | 0.469543 | 5.3:-386498 | MS.gene024978:CDS |
| CCTGAGTTCAAAGTATCCTT+AGG | 0.470817 | 5.3:+388289 | None:intergenic |
| TTATTCAAATTAAGGCCAAA+AGG | 0.471079 | 5.3:+386198 | None:intergenic |
| ATATTAATGCCACCTTGCAC+TGG | 0.478777 | 5.3:+388109 | None:intergenic |
| CGTATAACCCATTTCAGGGC+AGG | 0.484818 | 5.3:+388418 | None:intergenic |
| TGTTCTTCAGTTGAGTCCTC+CGG | 0.485992 | 5.3:+386240 | None:intergenic |
| TCGGCGGTGGGAGCGGAAGA+TGG | 0.491571 | 5.3:-388508 | MS.gene024978:CDS |
| AGTAGTTGAATCACTTGAGC+TGG | 0.493399 | 5.3:-386055 | MS.gene024978:CDS |
| ATCTCACGGCGGCTCCGACT+CGG | 0.498702 | 5.3:+388560 | None:intergenic |
| TCGTCGTCAGTTGTCATCTT+CGG | 0.501141 | 5.3:-388527 | MS.gene024978:CDS |
| CTTGTTCTAAACAAACCTCC+TGG | 0.510763 | 5.3:-388136 | MS.gene024978:CDS |
| TATTCAAATTAAGGCCAAAA+GGG | 0.513142 | 5.3:+386199 | None:intergenic |
| ACAAAGACGGTATTGGGCAT+TGG | 0.515751 | 5.3:-387800 | MS.gene024978:CDS |
| GTTCAAAAGGGTTACACCTA+AGG | 0.516651 | 5.3:-388305 | MS.gene024978:CDS |
| TTACTCTCAACCTCCTCGAT+TGG | 0.520303 | 5.3:-388041 | MS.gene024978:CDS |
| CTCAACTGAAGAACATCTCA+AGG | 0.534627 | 5.3:-386232 | MS.gene024978:CDS |
| TTGTTCTGGAATTCTTGTCA+TGG | 0.537926 | 5.3:-387999 | MS.gene024978:CDS |
| TGTTCTGGAATTCTTGTCAT+GGG | 0.542629 | 5.3:-387998 | MS.gene024978:CDS |
| AACATCAAGGGCTTCAAATG+AGG | 0.542967 | 5.3:-387927 | MS.gene024978:intron |
| TTGGCCTTAATTTGAATAAG+GGG | 0.543687 | 5.3:-386194 | MS.gene024978:CDS |
| TGAATCACTTGAGCTGGAAG+CGG | 0.546029 | 5.3:-386049 | MS.gene024978:CDS |
| CAGTTGTCATCTTCGGCGGT+GGG | 0.555838 | 5.3:-388520 | MS.gene024978:CDS |
| ACATCGTATAACCCATTTCA+GGG | 0.562278 | 5.3:+388414 | None:intergenic |
| CCTAAGGATACTTTGAACTC+AGG | 0.564942 | 5.3:-388289 | MS.gene024978:CDS |
| GTCCACTGTGCTGAAGTGTT+AGG | 0.564993 | 5.3:-386336 | MS.gene024978:CDS |
| TGATGCAGGTTATACATGGT+TGG | 0.566674 | 5.3:-386517 | MS.gene024978:intron |
| CCTTGCACTGGCATTCCAGG+AGG | 0.570257 | 5.3:+388121 | None:intergenic |
| TGAAGAACATCTCAAGGAAG+AGG | 0.572591 | 5.3:-386226 | MS.gene024978:CDS |
| ACATGATAACAAGTTCAAAA+GGG | 0.572750 | 5.3:-388317 | MS.gene024978:CDS |
| GACGGCAAGCTCATAAGAAG+TGG | 0.573583 | 5.3:-386284 | MS.gene024978:CDS |
| GTATAACCCATTTCAGGGCA+GGG | 0.573844 | 5.3:+388419 | None:intergenic |
| TCGAAGTCGAAGAGGTCACT+TGG | 0.576852 | 5.3:+388443 | None:intergenic |
| ATGACTCCGCCTGAACGTCT+AGG | 0.583378 | 5.3:+387766 | None:intergenic |
| AAGGTGGCATTAATATCAAA+CGG | 0.584548 | 5.3:-388102 | MS.gene024978:CDS |
| TATAACCCATTTCAGGGCAG+GGG | 0.588867 | 5.3:+388420 | None:intergenic |
| GTGATTTCATCATCGTCTCA+AGG | 0.589230 | 5.3:-387216 | MS.gene024978:intron |
| GTGAGAGATTCATGTTTGGG+GGG | 0.599286 | 5.3:+388214 | None:intergenic |
| TTGTTTAGAACAAGAATGTG+AGG | 0.599711 | 5.3:+388145 | None:intergenic |
| AGTGAGAGATTCATGTTTGG+GGG | 0.602687 | 5.3:+388213 | None:intergenic |
| CCTCCTGGAATGCCAGTGCA+AGG | 0.603092 | 5.3:-388121 | MS.gene024978:CDS |
| ACACTTCAGCACAGTGGACA+CGG | 0.608556 | 5.3:+386340 | None:intergenic |
| ACGGCAAGCTCATAAGAAGT+GGG | 0.609384 | 5.3:-386283 | MS.gene024978:CDS |
| AAGTGAGAGATTCATGTTTG+GGG | 0.615302 | 5.3:+388212 | None:intergenic |
| GTTTGATTTGTCTAATCCGG+AGG | 0.618245 | 5.3:-386256 | MS.gene024978:CDS |
| AAAAGAGAATCCTACAAAGA+CGG | 0.625860 | 5.3:-387813 | MS.gene024978:CDS |
| TTTCAGGTCGTGGTTGACAA+CGG | 0.626018 | 5.3:-387312 | MS.gene024978:intron |
| TTTAAATAAATAGAATGACA+CGG | 0.627054 | 5.3:-387836 | MS.gene024978:intron |
| TTTACAGTAGTAGTACTCAC+AGG | 0.632848 | 5.3:+388466 | None:intergenic |
| TTGGGGACTACAAGTATGGA+CGG | 0.637760 | 5.3:-386302 | MS.gene024978:CDS |
| GGCAGGGGTCGAAGTCGAAG+AGG | 0.644349 | 5.3:+388435 | None:intergenic |
| GTTAGGTACACCGATAATTG+GGG | 0.648978 | 5.3:-386319 | MS.gene024978:CDS |
| TCTAGTCTATGCACCAATCG+AGG | 0.653983 | 5.3:+388028 | None:intergenic |
| ACAAGTATGTATGTCCGAGT+CGG | 0.658753 | 5.3:-388574 | None:intergenic |
| GGAGTCATTAATGCTCCACT+GGG | 0.666010 | 5.3:-387751 | MS.gene024978:CDS |
| GTAATGATGCAGGTTATACA+TGG | 0.670336 | 5.3:-386521 | MS.gene024978:intron |
| GGATGTCCTAGACGTTCAGG+CGG | 0.673625 | 5.3:-387772 | MS.gene024978:CDS |
| TTTAACCGGTAGAAAACACC+AGG | 0.674752 | 5.3:-386484 | MS.gene024978:intron |
| TCGTCAGTTGTCATCTTCGG+CGG | 0.676738 | 5.3:-388524 | MS.gene024978:CDS |
| GAAGATGGAATGCAAAAGTG+CGG | 0.677074 | 5.3:+387958 | None:intergenic |
| ACGACGACTCCATGATCTCA+CGG | 0.680735 | 5.3:+388546 | None:intergenic |
| CGGCAAGCTCATAAGAAGTG+GGG | 0.688690 | 5.3:-386282 | MS.gene024978:CDS |
| GAGACGATGATGAAATCACT+CGG | 0.700343 | 5.3:+387220 | None:intergenic |
| CCTGGAATGCCAGTGCAAGG+TGG | 0.709094 | 5.3:-388118 | MS.gene024978:CDS |
| CAAGTGATTCAACTACTGAG+AGG | 0.710001 | 5.3:+386061 | None:intergenic |
| TACCTAACACTTCAGCACAG+TGG | 0.710893 | 5.3:+386334 | None:intergenic |
| AGTCTATGCACCAATCGAGG+AGG | 0.720434 | 5.3:+388031 | None:intergenic |
| ATGGATACAACCTTACCCAG+TGG | 0.725015 | 5.3:+387736 | None:intergenic |
| ACAGTAGTAGTACTCACAGG+TGG | 0.735705 | 5.3:+388469 | None:intergenic |
| TTGCAATGAAGATGTAATCG+AGG | 0.736658 | 5.3:+386153 | None:intergenic |
| ACGACTCCATGATCTCACGG+CGG | 0.860711 | 5.3:+388549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATAAATAGAATGACA+CGG | - | chr5.3:386734-386753 | MS.gene024978:intron | 15.0% |
| !!! | TTTAAACTTATCTTTAGTTT+TGG | - | chr5.3:387537-387556 | MS.gene024978:intron | 15.0% |
| !! | AACAATCAGAATAGAAATTA+TGG | + | chr5.3:388192-388211 | None:intergenic | 20.0% |
| !! | ACAATCAGAATAGAAATTAT+GGG | + | chr5.3:388191-388210 | None:intergenic | 20.0% |
| !! | TAATAAAGATTAAGCCTTTA+CGG | + | chr5.3:387146-387165 | None:intergenic | 20.0% |
| !!! | AATTTGTTGTTTAACAGAAT+TGG | + | chr5.3:386324-386343 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTTTAACAGAATT+GGG | + | chr5.3:386323-386342 | None:intergenic | 20.0% |
| !!! | CTTCAATTTAATTTCATGTT+TGG | - | chr5.3:387813-387832 | MS.gene024978:CDS | 20.0% |
| !!! | TCACAAATTTTCCATATTTT+AGG | + | chr5.3:387933-387952 | None:intergenic | 20.0% |
| ! | AAAACTAAACATAACAAAGG+GGG | + | chr5.3:387972-387991 | None:intergenic | 25.0% |
| ! | AAATGTTTGAGCCTAAAATA+TGG | - | chr5.3:387919-387938 | MS.gene024978:intron | 25.0% |
| ! | AACATGATAACAAGTTCAAA+AGG | - | chr5.3:386252-386271 | MS.gene024978:CDS | 25.0% |
| ! | AACATTGTGATTTAACTGAA+AGG | + | chr5.3:386878-386897 | None:intergenic | 25.0% |
| ! | ACAACATTATTGACAATATG+AGG | + | chr5.3:387219-387238 | None:intergenic | 25.0% |
| ! | ACATGATAACAAGTTCAAAA+GGG | - | chr5.3:386253-386272 | MS.gene024978:CDS | 25.0% |
| ! | AGCAATAAAGATAATTTGAG+AGG | + | chr5.3:387563-387582 | None:intergenic | 25.0% |
| ! | AGGAAAACTAAACATAACAA+AGG | + | chr5.3:387975-387994 | None:intergenic | 25.0% |
| ! | CAATCAGAATAGAAATTATG+GGG | + | chr5.3:388190-388209 | None:intergenic | 25.0% |
| ! | GAAAACTAAACATAACAAAG+GGG | + | chr5.3:387973-387992 | None:intergenic | 25.0% |
| ! | GGAAAACTAAACATAACAAA+GGG | + | chr5.3:387974-387993 | None:intergenic | 25.0% |
| ! | TAAGTCACCTTAAAATTTAG+AGG | - | chr5.3:387410-387429 | MS.gene024978:intron | 25.0% |
| ! | TAGGATTTAGCAAGATAATT+AGG | + | chr5.3:386955-386974 | None:intergenic | 25.0% |
| ! | TATTCAAATTAAGGCCAAAA+GGG | + | chr5.3:388374-388393 | None:intergenic | 25.0% |
| ! | TTATTCAAATTAAGGCCAAA+AGG | + | chr5.3:388375-388394 | None:intergenic | 25.0% |
| !! | ACATCAACCTCTAAATTTTA+AGG | + | chr5.3:387420-387439 | None:intergenic | 25.0% |
| !! | TAAATCACAATGTTTTGCAA+TGG | - | chr5.3:386884-386903 | MS.gene024978:intron | 25.0% |
| !! | TTTTGTAAACTCAACTAGTT+TGG | + | chr5.3:387695-387714 | None:intergenic | 25.0% |
| !!! | GGAAAATAGAATTTTAGTCT+GGG | - | chr5.3:387834-387853 | MS.gene024978:intron | 25.0% |
| !!! | GTGTTTTAAATTTAGTTCAC+TGG | + | chr5.3:387020-387039 | None:intergenic | 25.0% |
| !!! | TGGAAAATAGAATTTTAGTC+TGG | - | chr5.3:387833-387852 | MS.gene024978:intron | 25.0% |
| !!! | TTTGGCCTTAATTTGAATAA+GGG | - | chr5.3:388375-388394 | MS.gene024978:CDS | 25.0% |
| !!! | TTTTGGCCTTAATTTGAATA+AGG | - | chr5.3:388374-388393 | MS.gene024978:CDS | 25.0% |
| AAAAGAGAATCCTACAAAGA+CGG | - | chr5.3:386757-386776 | MS.gene024978:intron | 30.0% | |
| AAACTAAACATAACAAAGGG+GGG | + | chr5.3:387971-387990 | None:intergenic | 30.0% | |
| AAAGCAGTAAAGGAAACATA+GGG | + | chr5.3:386983-387002 | None:intergenic | 30.0% | |
| AAGGAAACATAGGGTAAAAT+AGG | + | chr5.3:386974-386993 | None:intergenic | 30.0% | |
| AAGGTGGCATTAATATCAAA+CGG | - | chr5.3:386468-386487 | MS.gene024978:intron | 30.0% | |
| ACGAAAGAGTTTATGGATAA+GGG | + | chr5.3:386201-386220 | None:intergenic | 30.0% | |
| CAAGTAATGTAAAGCAGTAA+AGG | + | chr5.3:386993-387012 | None:intergenic | 30.0% | |
| CAATATGCAATAATCCGTAA+AGG | - | chr5.3:387129-387148 | MS.gene024978:intron | 30.0% | |
| CTGAAACCAAATCAAATGAA+GGG | + | chr5.3:387244-387263 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGGAAACAT+AGG | + | chr5.3:386984-387003 | None:intergenic | 30.0% | |
| TGTTGTGATAGAAATCATGT+AGG | + | chr5.3:387888-387907 | None:intergenic | 30.0% | |
| TTACTGCTTTACATTACTTG+TGG | - | chr5.3:386993-387012 | MS.gene024978:intron | 30.0% | |
| TTCACATCATCACATGTTAT+TGG | - | chr5.3:387744-387763 | MS.gene024978:intron | 30.0% | |
| TTGTAACCCTTCATTTGATT+TGG | - | chr5.3:387235-387254 | MS.gene024978:CDS | 30.0% | |
| TTGTATCCATATTCTCAACT+TGG | - | chr5.3:386847-386866 | MS.gene024978:intron | 30.0% | |
| TTTATAGCACTGCATAATTC+TGG | - | chr5.3:387476-387495 | MS.gene024978:intron | 30.0% | |
| ! | AGTTTATGGATAAGGGTTTT+AGG | + | chr5.3:386194-386213 | None:intergenic | 30.0% |
| ! | TAAACTCTTTCGTCTAAAAC+AGG | - | chr5.3:386208-386227 | MS.gene024978:CDS | 30.0% |
| ! | TGTTATCATGTTGTTGTTGT+GGG | + | chr5.3:386244-386263 | None:intergenic | 30.0% |
| ! | TTGTTATCATGTTGTTGTTG+TGG | + | chr5.3:386245-386264 | None:intergenic | 30.0% |
| ! | TTGTTTAGAACAAGAATGTG+AGG | + | chr5.3:386428-386447 | None:intergenic | 30.0% |
| !! | ACAGTTTGATTTGTCTAATC+CGG | - | chr5.3:388311-388330 | MS.gene024978:CDS | 30.0% |
| !! | GTTTTAGACGAAAGAGTTTA+TGG | + | chr5.3:386208-386227 | None:intergenic | 30.0% |
| !! | TTGGCCTTAATTTGAATAAG+GGG | - | chr5.3:388376-388395 | MS.gene024978:CDS | 30.0% |
| !!! | AGCATGCATTTTTTGCATTT+CGG | + | chr5.3:387671-387690 | None:intergenic | 30.0% |
| !!! | ATTTTAGTTTCCATAGTGTG+TGG | - | chr5.3:387041-387060 | MS.gene024978:intron | 30.0% |
| AACACCAGGTAATAGAAACA+AGG | - | chr5.3:388100-388119 | MS.gene024978:CDS | 35.0% | |
| AACATCGTATAACCCATTTC+AGG | + | chr5.3:386160-386179 | None:intergenic | 35.0% | |
| AAGTGAGAGATTCATGTTTG+GGG | + | chr5.3:386361-386380 | None:intergenic | 35.0% | |
| AATCCTACAAAGACGGTATT+GGG | - | chr5.3:386764-386783 | MS.gene024978:intron | 35.0% | |
| AATTAAGATCTCCCTCCTTA+TGG | - | chr5.3:387640-387659 | MS.gene024978:intron | 35.0% | |
| ACACCAGGTAATAGAAACAA+GGG | - | chr5.3:388101-388120 | MS.gene024978:CDS | 35.0% | |
| ACATCGTATAACCCATTTCA+GGG | + | chr5.3:386159-386178 | None:intergenic | 35.0% | |
| AGAAGTGAGAGATTCATGTT+TGG | + | chr5.3:386363-386382 | None:intergenic | 35.0% | |
| AGGCTCAAACATTTGCAATT+AGG | + | chr5.3:387913-387932 | None:intergenic | 35.0% | |
| ATAATTGGGGACTACAAGTA+TGG | - | chr5.3:388264-388283 | MS.gene024978:CDS | 35.0% | |
| ATACATGAAAAAGAGTTGGG+AGG | - | chr5.3:388554-388573 | MS.gene024978:CDS | 35.0% | |
| ATTTCGGTAATTCCATAAGG+AGG | + | chr5.3:387655-387674 | None:intergenic | 35.0% | |
| CCCATACATGAAAAAGAGTT+GGG | - | chr5.3:388551-388570 | MS.gene024978:CDS | 35.0% | |
| CCTGAAACCAAATCAAATGA+AGG | + | chr5.3:387245-387264 | None:intergenic | 35.0% | |
| CTGATAGCTACATAAAAGGT+AGG | - | chr5.3:387789-387808 | MS.gene024978:CDS | 35.0% | |
| CTTCCGTGAAAAAACATCAA+GGG | - | chr5.3:386631-386650 | MS.gene024978:intron | 35.0% | |
| GAAGTGAGAGATTCATGTTT+GGG | + | chr5.3:386362-386381 | None:intergenic | 35.0% | |
| GACGAAAGAGTTTATGGATA+AGG | + | chr5.3:386202-386221 | None:intergenic | 35.0% | |
| GCACAAGTAATTAAACCGAT+AGG | - | chr5.3:387856-387875 | MS.gene024978:intron | 35.0% | |
| GTAATGATGCAGGTTATACA+TGG | - | chr5.3:388049-388068 | MS.gene024978:CDS | 35.0% | |
| TACTTGTAGTCCCCAATTAT+CGG | + | chr5.3:388264-388283 | None:intergenic | 35.0% | |
| TATTGCATATTGCAGCTGTA+AGG | + | chr5.3:387121-387140 | None:intergenic | 35.0% | |
| TCTATTCTGATTGTTTGTGC+TGG | - | chr5.3:388197-388216 | MS.gene024978:CDS | 35.0% | |
| TCTCCTTTGATCTTCTTAGT+TGG | - | chr5.3:388005-388024 | MS.gene024978:CDS | 35.0% | |
| TCTTCCGTGAAAAAACATCA+AGG | - | chr5.3:386630-386649 | MS.gene024978:intron | 35.0% | |
| TGCAGTGCTTGAGATATATT+GGG | + | chr5.3:388456-388475 | None:intergenic | 35.0% | |
| TGCATTTCGGTAATTCCATA+AGG | + | chr5.3:387658-387677 | None:intergenic | 35.0% | |
| TGCTCCCCTTATTCAAATTA+AGG | + | chr5.3:388383-388402 | None:intergenic | 35.0% | |
| TGTTAGGTACACCGATAATT+GGG | - | chr5.3:388250-388269 | MS.gene024978:CDS | 35.0% | |
| TTGCAATGAAGATGTAATCG+AGG | + | chr5.3:388420-388439 | None:intergenic | 35.0% | |
| TTGCAGTGCTTGAGATATAT+TGG | + | chr5.3:388457-388476 | None:intergenic | 35.0% | |
| TTGCCAACTAAGAAGATCAA+AGG | + | chr5.3:388011-388030 | None:intergenic | 35.0% | |
| TTTACAGTAGTAGTACTCAC+AGG | + | chr5.3:386107-386126 | None:intergenic | 35.0% | |
| TTTCGGTAATTCCATAAGGA+GGG | + | chr5.3:387654-387673 | None:intergenic | 35.0% | |
| ! | GACAATATGAGGAGCTTTTA+TGG | + | chr5.3:387208-387227 | None:intergenic | 35.0% |
| ! | GATTAGCCAAGTTGAGAATA+TGG | + | chr5.3:386856-386875 | None:intergenic | 35.0% |
| ! | TATTACCTGGTGTTTTCTAC+CGG | + | chr5.3:388094-388113 | None:intergenic | 35.0% |
| !! | CAACTCTTTTTCATGTATGG+GGG | + | chr5.3:388552-388571 | None:intergenic | 35.0% |
| !! | CCAACTCTTTTTCATGTATG+GGG | + | chr5.3:388553-388572 | None:intergenic | 35.0% |
| !! | CCCAACTCTTTTTCATGTAT+GGG | + | chr5.3:388554-388573 | None:intergenic | 35.0% |
| !! | CCTTCATTTGATTTGGTTTC+AGG | - | chr5.3:387242-387261 | MS.gene024978:CDS | 35.0% |
| !! | TCCCAACTCTTTTTCATGTA+TGG | + | chr5.3:388555-388574 | None:intergenic | 35.0% |
| !! | TGTTCTGGAATTCTTGTCAT+GGG | - | chr5.3:386572-386591 | MS.gene024978:intron | 35.0% |
| !! | TTGTTCTGGAATTCTTGTCA+TGG | - | chr5.3:386571-386590 | MS.gene024978:intron | 35.0% |
| !!! | AAGCCCTTGATGTTTTTTCA+CGG | + | chr5.3:386637-386656 | None:intergenic | 35.0% |
| !!! | ATAAGGGTTTTAGGTAGTTG+AGG | + | chr5.3:386185-386204 | None:intergenic | 35.0% |
| !!! | TAAGGGTTTTAGGTAGTTGA+GGG | + | chr5.3:386184-386203 | None:intergenic | 35.0% |
| !!! | TGATGTTTTTTCACGGAAGA+TGG | + | chr5.3:386630-386649 | None:intergenic | 35.0% |
| AACATCAAGGGCTTCAAATG+AGG | - | chr5.3:386643-386662 | MS.gene024978:intron | 40.0% | |
| AATGTCACAGACACTGCAAA+AGG | + | chr5.3:387518-387537 | None:intergenic | 40.0% | |
| AGACTAGACAGAGATTGTTC+TGG | - | chr5.3:386557-386576 | MS.gene024978:intron | 40.0% | |
| AGTAGTTGAATCACTTGAGC+TGG | - | chr5.3:388515-388534 | MS.gene024978:CDS | 40.0% | |
| AGTGAGAGATTCATGTTTGG+GGG | + | chr5.3:386360-386379 | None:intergenic | 40.0% | |
| ATATTAATGCCACCTTGCAC+TGG | + | chr5.3:386464-386483 | None:intergenic | 40.0% | |
| ATGTCACAGACACTGCAAAA+GGG | + | chr5.3:387517-387536 | None:intergenic | 40.0% | |
| CAAGTGATTCAACTACTGAG+AGG | + | chr5.3:388512-388531 | None:intergenic | 40.0% | |
| CCCCATACATGAAAAAGAGT+TGG | - | chr5.3:388550-388569 | MS.gene024978:CDS | 40.0% | |
| CCTAAGGATACTTTGAACTC+AGG | - | chr5.3:386281-386300 | MS.gene024978:CDS | 40.0% | |
| CGAGCTGATAGCTACATAAA+AGG | - | chr5.3:387785-387804 | MS.gene024978:CDS | 40.0% | |
| CTCAACTGAAGAACATCTCA+AGG | - | chr5.3:388338-388357 | MS.gene024978:CDS | 40.0% | |
| GAAGATGGAATGCAAAAGTG+CGG | + | chr5.3:386615-386634 | None:intergenic | 40.0% | |
| GAATCATTACCAGCTGATCT+TGG | - | chr5.3:388126-388145 | MS.gene024978:CDS | 40.0% | |
| GAATCCTACAAAGACGGTAT+TGG | - | chr5.3:386763-386782 | MS.gene024978:intron | 40.0% | |
| GAGACGATGATGAAATCACT+CGG | + | chr5.3:387353-387372 | None:intergenic | 40.0% | |
| GTGATTTCATCATCGTCTCA+AGG | - | chr5.3:387354-387373 | MS.gene024978:intron | 40.0% | |
| GTGTTAGGTACACCGATAAT+TGG | - | chr5.3:388249-388268 | MS.gene024978:CDS | 40.0% | |
| GTTAGGTACACCGATAATTG+GGG | - | chr5.3:388251-388270 | MS.gene024978:CDS | 40.0% | |
| GTTCAAAAGGGTTACACCTA+AGG | - | chr5.3:386265-386284 | MS.gene024978:CDS | 40.0% | |
| TAAACATAACAAAGGGGGGA+GGG | + | chr5.3:387967-387986 | None:intergenic | 40.0% | |
| TCATGTAGGACATCACCTAT+CGG | + | chr5.3:387874-387893 | None:intergenic | 40.0% | |
| TCATTACCAGTGACATGAGT+CGG | + | chr5.3:388036-388055 | None:intergenic | 40.0% | |
| TGAAGAACATCTCAAGGAAG+AGG | - | chr5.3:388344-388363 | MS.gene024978:CDS | 40.0% | |
| TGATGCAGGTTATACATGGT+TGG | - | chr5.3:388053-388072 | MS.gene024978:CDS | 40.0% | |
| TGGCAATCATTGTGTATACG+AGG | + | chr5.3:387067-387086 | None:intergenic | 40.0% | |
| TTTAACCGGTAGAAAACACC+AGG | - | chr5.3:388086-388105 | MS.gene024978:CDS | 40.0% | |
| TTTCATCATCGTCTCAAGGT+TGG | - | chr5.3:387358-387377 | MS.gene024978:intron | 40.0% | |
| ! | CCTGAGTTCAAAGTATCCTT+AGG | + | chr5.3:386284-386303 | None:intergenic | 40.0% |
| ! | CTTGTTCTAAACAAACCTCC+TGG | - | chr5.3:386434-386453 | MS.gene024978:intron | 40.0% |
| ! | TCAAAGGAGACACGTTTTGA+AGG | + | chr5.3:387995-388014 | None:intergenic | 40.0% |
| !! | CTTCCCTTGTTTCTATTACC+TGG | + | chr5.3:388107-388126 | None:intergenic | 40.0% |
| !! | GGTGTTTTCTACCGGTTAAA+GGG | + | chr5.3:388086-388105 | None:intergenic | 40.0% |
| !! | GTGTTTTCTACCGGTTAAAG+GGG | + | chr5.3:388085-388104 | None:intergenic | 40.0% |
| !! | GTTTGATTTGTCTAATCCGG+AGG | - | chr5.3:388314-388333 | MS.gene024978:CDS | 40.0% |
| !! | TGGTGTTTTCTACCGGTTAA+AGG | + | chr5.3:388087-388106 | None:intergenic | 40.0% |
| !! | TTTGATTTGGTTTCAGGTCG+TGG | - | chr5.3:387248-387267 | MS.gene024978:CDS | 40.0% |
| AAACATAACAAAGGGGGGAG+GGG | + | chr5.3:387966-387985 | None:intergenic | 45.0% | |
| ACAAGTTCACCCACACTTAC+AGG | + | chr5.3:387454-387473 | None:intergenic | 45.0% | |
| ACAGTAGTAGTACTCACAGG+TGG | + | chr5.3:386104-386123 | None:intergenic | 45.0% | |
| ACGGCAAGCTCATAAGAAGT+GGG | - | chr5.3:388287-388306 | MS.gene024978:CDS | 45.0% | |
| ATGCCCAATACCGTCTTTGT+AGG | + | chr5.3:386770-386789 | None:intergenic | 45.0% | |
| ATGGATACAACCTTACCCAG+TGG | + | chr5.3:386837-386856 | None:intergenic | 45.0% | |
| ATGTGACAGCAGAGAGTTGT+TGG | + | chr5.3:387087-387106 | None:intergenic | 45.0% | |
| CAAGTTCACCCACACTTACA+GGG | + | chr5.3:387453-387472 | None:intergenic | 45.0% | |
| CATTAATGCTCCACTGGGTA+AGG | - | chr5.3:386824-386843 | MS.gene024978:intron | 45.0% | |
| CATTACCAGTGACATGAGTC+GGG | + | chr5.3:388035-388054 | None:intergenic | 45.0% | |
| CTAAACATAACAAAGGGGGG+AGG | + | chr5.3:387968-387987 | None:intergenic | 45.0% | |
| CTGCTGTCACATGAATGCTT+AGG | - | chr5.3:387095-387114 | MS.gene024978:intron | 45.0% | |
| GGAGTCATTAATGCTCCACT+GGG | - | chr5.3:386819-386838 | MS.gene024978:intron | 45.0% | |
| GTATAACCCATTTCAGGGCA+GGG | + | chr5.3:386154-386173 | None:intergenic | 45.0% | |
| GTGAGAGATTCATGTTTGGG+GGG | + | chr5.3:386359-386378 | None:intergenic | 45.0% | |
| GTGATTGTCCCTGTAAGTGT+GGG | - | chr5.3:387442-387461 | MS.gene024978:intron | 45.0% | |
| GTTGTAGTACCAAGATCAGC+TGG | + | chr5.3:388138-388157 | None:intergenic | 45.0% | |
| TACCTAACACTTCAGCACAG+TGG | + | chr5.3:388239-388258 | None:intergenic | 45.0% | |
| TATAACCCATTTCAGGGCAG+GGG | + | chr5.3:386153-386172 | None:intergenic | 45.0% | |
| TCGTCGTCAGTTGTCATCTT+CGG | - | chr5.3:386043-386062 | MS.gene024978:CDS | 45.0% | |
| TCTAGTCTATGCACCAATCG+AGG | + | chr5.3:386545-386564 | None:intergenic | 45.0% | |
| TGAATCACTTGAGCTGGAAG+CGG | - | chr5.3:388521-388540 | MS.gene024978:CDS | 45.0% | |
| TGTGATTGTCCCTGTAAGTG+TGG | - | chr5.3:387441-387460 | MS.gene024978:intron | 45.0% | |
| TGTTCTTCAGTTGAGTCCTC+CGG | + | chr5.3:388333-388352 | None:intergenic | 45.0% | |
| TTACTCTCAACCTCCTCGAT+TGG | - | chr5.3:386529-386548 | MS.gene024978:intron | 45.0% | |
| TTGGAGCTTTCCCCTTTAAC+CGG | - | chr5.3:388072-388091 | MS.gene024978:CDS | 45.0% | |
| TTGGGGACTACAAGTATGGA+CGG | - | chr5.3:388268-388287 | MS.gene024978:CDS | 45.0% | |
| ! | ACAAAGACGGTATTGGGCAT+TGG | - | chr5.3:386770-386789 | MS.gene024978:intron | 45.0% |
| ! | CATGTCACTGGTAATGATGC+AGG | - | chr5.3:388039-388058 | MS.gene024978:CDS | 45.0% |
| ! | TTTCAGGTCGTGGTTGACAA+CGG | - | chr5.3:387258-387277 | MS.gene024978:CDS | 45.0% |
| AACATAACAAAGGGGGGAGG+GGG | + | chr5.3:387965-387984 | None:intergenic | 50.0% | |
| ACACTTCAGCACAGTGGACA+CGG | + | chr5.3:388233-388252 | None:intergenic | 50.0% | |
| ACGACGACTCCATGATCTCA+CGG | + | chr5.3:386027-386046 | None:intergenic | 50.0% | |
| AGTCTATGCACCAATCGAGG+AGG | + | chr5.3:386542-386561 | None:intergenic | 50.0% | |
| CGGAGTCATTAATGCTCCAC+TGG | - | chr5.3:386818-386837 | MS.gene024978:intron | 50.0% | |
| CGGCAAGCTCATAAGAAGTG+GGG | - | chr5.3:388288-388307 | MS.gene024978:CDS | 50.0% | |
| CGTATAACCCATTTCAGGGC+AGG | + | chr5.3:386155-386174 | None:intergenic | 50.0% | |
| CTTGGATGTCCTAGACGTTC+AGG | - | chr5.3:386795-386814 | MS.gene024978:intron | 50.0% | |
| GACGGCAAGCTCATAAGAAG+TGG | - | chr5.3:388286-388305 | MS.gene024978:CDS | 50.0% | |
| GTATACGAGGCCACACACTA+TGG | + | chr5.3:387054-387073 | None:intergenic | 50.0% | |
| TCGAAGTCGAAGAGGTCACT+TGG | + | chr5.3:386130-386149 | None:intergenic | 50.0% | |
| TCGTCAGTTGTCATCTTCGG+CGG | - | chr5.3:386046-386065 | MS.gene024978:CDS | 50.0% | |
| TGGGAGCGGAAGATGGAAAA+TGG | - | chr5.3:386069-386088 | MS.gene024978:CDS | 50.0% | |
| ! | GTCCACTGTGCTGAAGTGTT+AGG | - | chr5.3:388234-388253 | MS.gene024978:CDS | 50.0% |
| ! | TCATGTTTGGGGGGTGTAGT+AGG | + | chr5.3:386350-386369 | None:intergenic | 50.0% |
| !! | CGGTATTGGGCATTGGTTCT+TGG | - | chr5.3:386777-386796 | MS.gene024978:intron | 50.0% |
| !!! | AAGGAAGAGGCACTCCCTTT+TGG | - | chr5.3:388357-388376 | MS.gene024978:CDS | 50.0% |
| ACATAACAAAGGGGGGAGGG+GGG | + | chr5.3:387964-387983 | None:intergenic | 55.0% | |
| ACGACTCCATGATCTCACGG+CGG | + | chr5.3:386024-386043 | None:intergenic | 55.0% | |
| ATGACTCCGCCTGAACGTCT+AGG | + | chr5.3:386807-386826 | None:intergenic | 55.0% | |
| CAGTTGTCATCTTCGGCGGT+GGG | - | chr5.3:386050-386069 | MS.gene024978:CDS | 55.0% | |
| GCAATCCCGACTCATGTCAC+TGG | - | chr5.3:388027-388046 | MS.gene024978:CDS | 55.0% | |
| GGATGTCCTAGACGTTCAGG+CGG | - | chr5.3:386798-386817 | MS.gene024978:intron | 55.0% | |
| TCAGTTGTCATCTTCGGCGG+TGG | - | chr5.3:386049-386068 | MS.gene024978:CDS | 55.0% | |
| TTCGACCCCTGCCCTGAAAT+GGG | - | chr5.3:386145-386164 | MS.gene024978:CDS | 55.0% | |
| ! | TGTTTGGGGGGTGTAGTAGG+AGG | + | chr5.3:386347-386366 | None:intergenic | 55.0% |
| CCTCCTGGAATGCCAGTGCA+AGG | - | chr5.3:386449-386468 | MS.gene024978:intron | 60.0% | |
| CCTGGAATGCCAGTGCAAGG+TGG | - | chr5.3:386452-386471 | MS.gene024978:intron | 60.0% | |
| CTTCGACCCCTGCCCTGAAA+TGG | - | chr5.3:386144-386163 | MS.gene024978:CDS | 60.0% | |
| ! | CCACCTTGCACTGGCATTCC+AGG | + | chr5.3:386455-386474 | None:intergenic | 60.0% |
| ! | CCTTGCACTGGCATTCCAGG+AGG | + | chr5.3:386452-386471 | None:intergenic | 60.0% |
| ATCTCACGGCGGCTCCGACT+CGG | + | chr5.3:386013-386032 | None:intergenic | 65.0% | |
| GGCAGGGGTCGAAGTCGAAG+AGG | + | chr5.3:386138-386157 | None:intergenic | 65.0% | |
| GTCATCTTCGGCGGTGGGAG+CGG | - | chr5.3:386055-386074 | MS.gene024978:CDS | 65.0% | |
| TAACAAAGGGGGGAGGGGGG+AGG | + | chr5.3:387961-387980 | None:intergenic | 65.0% | |
| TCGGAGCCGCCGTGAGATCA+TGG | - | chr5.3:386015-386034 | MS.gene024978:CDS | 65.0% | |
| TCGGCGGTGGGAGCGGAAGA+TGG | - | chr5.3:386062-386081 | MS.gene024978:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 386002 | 388590 | 386002 | ID=MS.gene024978 |
| chr5.3 | mRNA | 386002 | 388590 | 386002 | ID=MS.gene024978.t1;Parent=MS.gene024978 |
| chr5.3 | exon | 387928 | 388590 | 387928 | ID=MS.gene024978.t1.exon1;Parent=MS.gene024978.t1 |
| chr5.3 | CDS | 387928 | 388590 | 387928 | ID=cds.MS.gene024978.t1;Parent=MS.gene024978.t1 |
| chr5.3 | exon | 387747 | 387845 | 387747 | ID=MS.gene024978.t1.exon2;Parent=MS.gene024978.t1 |
| chr5.3 | CDS | 387747 | 387845 | 387747 | ID=cds.MS.gene024978.t1;Parent=MS.gene024978.t1 |
| chr5.3 | exon | 387217 | 387328 | 387217 | ID=MS.gene024978.t1.exon3;Parent=MS.gene024978.t1 |
| chr5.3 | CDS | 387217 | 387328 | 387217 | ID=cds.MS.gene024978.t1;Parent=MS.gene024978.t1 |
| chr5.3 | exon | 386485 | 386531 | 386485 | ID=MS.gene024978.t1.exon4;Parent=MS.gene024978.t1 |
| chr5.3 | CDS | 386485 | 386531 | 386485 | ID=cds.MS.gene024978.t1;Parent=MS.gene024978.t1 |
| chr5.3 | exon | 386002 | 386364 | 386002 | ID=MS.gene024978.t1.exon5;Parent=MS.gene024978.t1 |
| chr5.3 | CDS | 386002 | 386364 | 386002 | ID=cds.MS.gene024978.t1;Parent=MS.gene024978.t1 |
| Gene Sequence |
| Protein sequence |
