Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025694.t1 | XP_013450381.1 | 98.2 | 883 | 16 | 0 | 1 | 883 | 1 | 883 | 0.00E+00 | 1715.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025694.t1 | P0DKG8 | 68.4 | 887 | 272 | 7 | 1 | 883 | 1 | 883 | 0.0e+00 | 1191.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025694.t1 | A0A072U3V9 | 98.2 | 883 | 16 | 0 | 1 | 883 | 1 | 883 | 0.0e+00 | 1715.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene007306 | MS.gene025694 | PPI |
MS.gene020558 | MS.gene025694 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025694.t1 | MTR_7g108940 | 98.301 | 883 | 15 | 0 | 1 | 883 | 1 | 883 | 0.0 | 1815 |
MS.gene025694.t1 | MTR_7g108940 | 97.778 | 810 | 18 | 0 | 1 | 810 | 1 | 810 | 0.0 | 1652 |
MS.gene025694.t1 | MTR_8g020880 | 38.810 | 353 | 189 | 8 | 146 | 497 | 221 | 547 | 8.74e-62 | 222 |
MS.gene025694.t1 | MTR_8g020880 | 38.810 | 353 | 189 | 8 | 146 | 497 | 221 | 547 | 2.25e-61 | 222 |
MS.gene025694.t1 | MTR_4g123930 | 30.091 | 329 | 200 | 7 | 175 | 492 | 120 | 429 | 1.86e-38 | 150 |
MS.gene025694.t1 | MTR_4g123930 | 30.395 | 329 | 199 | 7 | 175 | 492 | 120 | 429 | 1.92e-37 | 149 |
MS.gene025694.t1 | MTR_4g123930 | 30.189 | 318 | 192 | 7 | 186 | 492 | 1 | 299 | 7.70e-37 | 142 |
MS.gene025694.t1 | MTR_4g123930 | 30.189 | 318 | 192 | 7 | 186 | 492 | 1 | 299 | 1.46e-35 | 141 |
MS.gene025694.t1 | MTR_5g007870 | 37.054 | 224 | 129 | 5 | 126 | 339 | 108 | 329 | 2.66e-34 | 142 |
MS.gene025694.t1 | MTR_5g007870 | 36.364 | 121 | 71 | 2 | 377 | 497 | 451 | 565 | 2.02e-15 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025694.t1 | AT4G02260 | 68.806 | 888 | 267 | 8 | 1 | 883 | 1 | 883 | 0.0 | 1243 |
MS.gene025694.t1 | AT4G02260 | 68.729 | 889 | 267 | 9 | 1 | 883 | 1 | 884 | 0.0 | 1238 |
MS.gene025694.t1 | AT4G02260 | 67.793 | 888 | 261 | 9 | 1 | 883 | 1 | 868 | 0.0 | 1212 |
MS.gene025694.t1 | AT4G02260 | 69.212 | 812 | 240 | 8 | 1 | 807 | 1 | 807 | 0.0 | 1135 |
MS.gene025694.t1 | AT1G54130 | 37.853 | 354 | 195 | 7 | 144 | 497 | 211 | 539 | 3.01e-62 | 224 |
MS.gene025694.t1 | AT3G14050 | 39.045 | 356 | 184 | 9 | 146 | 497 | 209 | 535 | 3.89e-62 | 224 |
MS.gene025694.t1 | AT3G17470 | 31.288 | 326 | 198 | 11 | 180 | 495 | 122 | 431 | 1.32e-36 | 144 |
MS.gene025694.t1 | AT3G17470 | 30.532 | 357 | 213 | 13 | 180 | 526 | 122 | 453 | 1.64e-36 | 146 |
MS.gene025694.t1 | AT3G17470 | 29.504 | 383 | 234 | 14 | 180 | 551 | 137 | 494 | 1.74e-36 | 146 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCAGGACTTCTTTATATTT+TGG | 0.117821 | 7.1:+5097534 | None:intergenic |
TGAAGGAAATTTAGAAAATT+TGG | 0.135903 | 7.1:-5096896 | MS.gene025694:intron |
GGACCTTCGGCAAATGTTTC+TGG | 0.140517 | 7.1:-5102831 | MS.gene025694:CDS |
GCAGATTTGCTATCATGTTC+TGG | 0.190657 | 7.1:-5100155 | MS.gene025694:intron |
CAAAGCAAACCTGTGCAATT+TGG | 0.221140 | 7.1:+5100429 | None:intergenic |
CACTGTTACAAGAGATCTTC+TGG | 0.241677 | 7.1:-5099327 | MS.gene025694:CDS |
GAGAGGATAGAGGAGGAATT+TGG | 0.243763 | 7.1:-5103075 | MS.gene025694:CDS |
TGGACTAACTCCAGTTCTTT+AGG | 0.245830 | 7.1:+5103497 | None:intergenic |
AGATCAAATACCGGGTGTTT+TGG | 0.268009 | 7.1:-5096750 | MS.gene025694:CDS |
CCAGTAGCTCCAAACATAAA+AGG | 0.272058 | 7.1:-5097755 | MS.gene025694:CDS |
TATATGATACACACTGAAAT+TGG | 0.278187 | 7.1:-5099091 | MS.gene025694:CDS |
TTCACCTTTGCATAATCTTC+AGG | 0.279113 | 7.1:+5100994 | None:intergenic |
GCTTGGGATGTATCAAATTA+AGG | 0.281559 | 7.1:-5101253 | MS.gene025694:intron |
CTCCTTTGGCAAAGTTGCTT+GGG | 0.299059 | 7.1:-5101269 | MS.gene025694:CDS |
CTGTGTGTAAAGAGCCTTAC+AGG | 0.317355 | 7.1:-5100680 | MS.gene025694:intron |
GTTGAGGTTGCACGGATTCT+TGG | 0.319585 | 7.1:-5103280 | MS.gene025694:CDS |
CTTTCTCATGTTCTTTGAAT+AGG | 0.319692 | 7.1:+5100956 | None:intergenic |
CAGATTTGCTATCATGTTCT+GGG | 0.322566 | 7.1:-5100154 | MS.gene025694:CDS |
TACATACAGATCTAGGAATA+GGG | 0.332916 | 7.1:+5100110 | None:intergenic |
ATTACAGGTATTTGCTCCTT+TGG | 0.341930 | 7.1:-5101283 | MS.gene025694:CDS |
GCTCCTTTGGCAAAGTTGCT+TGG | 0.345703 | 7.1:-5101270 | MS.gene025694:CDS |
ATACATACAGATCTAGGAAT+AGG | 0.350804 | 7.1:+5100109 | None:intergenic |
GCCTCGTGGCACAATATAGA+AGG | 0.351249 | 7.1:-5097480 | MS.gene025694:CDS |
AGTGGGAGAGAATTCGTTAC+TGG | 0.356793 | 7.1:-5099663 | MS.gene025694:CDS |
AGCTTACCGTAAAAGCATTA+TGG | 0.356855 | 7.1:+5103477 | None:intergenic |
CATTTGTCCAGGAACTTGAT+TGG | 0.368685 | 7.1:-5103158 | MS.gene025694:intron |
CAAAGCCGTGCGTTGGGGTT+GGG | 0.369858 | 7.1:-5100295 | MS.gene025694:CDS |
TGTACCTCCCACAAACTTCC+AGG | 0.375552 | 7.1:+5103669 | None:intergenic |
ATTGCAACCCCTAAACCTAA+TGG | 0.376245 | 7.1:-5099961 | MS.gene025694:CDS |
ATTGTTAACTTGAATCATAT+TGG | 0.380037 | 7.1:+5097557 | None:intergenic |
CATTGCAATGGAGACATTAC+AGG | 0.381847 | 7.1:-5101298 | MS.gene025694:CDS |
TTAAACCAAAGCCGTGCGTT+GGG | 0.385297 | 7.1:-5100301 | MS.gene025694:CDS |
TGGGGTTGATCCATGGAATC+TGG | 0.390644 | 7.1:-5100135 | MS.gene025694:CDS |
GGTCTAAGAATTGATCATCT+TGG | 0.398616 | 7.1:+5100730 | None:intergenic |
ACACTTCACGAGGGATTCTC+TGG | 0.400032 | 7.1:-5103777 | MS.gene025694:CDS |
TATGTTCAGGCTTGAAATAC+AGG | 0.403830 | 7.1:-5099893 | MS.gene025694:intron |
GTAGATTAGAACAGAAGAAA+TGG | 0.405177 | 7.1:-5099721 | MS.gene025694:intron |
CCAACCCCAACGCACGGCTT+TGG | 0.406391 | 7.1:+5100296 | None:intergenic |
ATGGCAGTTGTCTTGTTCTT+CGG | 0.412219 | 7.1:-5103724 | MS.gene025694:CDS |
CATGAGCTCTAGGGAATTTG+TGG | 0.417115 | 7.1:-5099351 | MS.gene025694:CDS |
AAATCTCCTAGGGTTCTTAC+CGG | 0.417218 | 7.1:-5104445 | MS.gene025694:CDS |
ACATATGCCTCCACATAAAC+AGG | 0.418695 | 7.1:-5102621 | MS.gene025694:intron |
GTGTGAATGTATGCAATTCT+TGG | 0.422183 | 7.1:-5104519 | MS.gene025694:CDS |
ACCAGCTGTGGACTGCATAA+AGG | 0.423090 | 7.1:+5100272 | None:intergenic |
AACGACCAGGCTGAGGTTGA+TGG | 0.426492 | 7.1:-5096952 | MS.gene025694:intron |
GGCATTGCAGCTCACTATAG+TGG | 0.428991 | 7.1:-5099681 | MS.gene025694:CDS |
ATTTGTCCAGGAACTTGATT+GGG | 0.429628 | 7.1:-5103157 | MS.gene025694:intron |
TGTGACGCCAAGTGCTTTGT+CGG | 0.430385 | 7.1:+5103797 | None:intergenic |
CTAGATTTGCATCTAGAGAA+TGG | 0.434783 | 7.1:-5103743 | MS.gene025694:CDS |
CAGTAGCTCCAAACATAAAA+GGG | 0.435513 | 7.1:-5097754 | MS.gene025694:CDS |
GTATCTTCCTCCTAAAGAAC+TGG | 0.435659 | 7.1:-5103507 | MS.gene025694:CDS |
AGAATCCGTGCAACCTCAAC+CGG | 0.436241 | 7.1:+5103283 | None:intergenic |
TCCCAACTAGGTGTCAAAGC+TGG | 0.436553 | 7.1:-5102906 | MS.gene025694:intron |
AACAATTATTTCAGGCATGA+TGG | 0.437402 | 7.1:-5097142 | MS.gene025694:intron |
GATTGGGAGTCAATTGCTGC+TGG | 0.437948 | 7.1:-5103141 | MS.gene025694:CDS |
TTGCAACCCCTAAACCTAAT+GGG | 0.442273 | 7.1:-5099960 | MS.gene025694:CDS |
GCTTCTGCACCTTTCATGTC+AGG | 0.448291 | 7.1:-5104831 | MS.gene025694:intron |
TCCTGCCAGGTTTAGAAAGT+TGG | 0.448380 | 7.1:-5097518 | MS.gene025694:CDS |
AACAAAATACATACAGATCT+AGG | 0.449095 | 7.1:+5100103 | None:intergenic |
GCCTTTATGCAGTCCACAGC+TGG | 0.449575 | 7.1:-5100273 | MS.gene025694:intron |
CCAAAGCCGTGCGTTGGGGT+TGG | 0.452445 | 7.1:-5100296 | MS.gene025694:CDS |
GAGAGAATTCGTTACTGGCT+TGG | 0.454991 | 7.1:-5099658 | MS.gene025694:CDS |
CTTCATCATTCATCCGGTTG+AGG | 0.455435 | 7.1:-5103296 | MS.gene025694:CDS |
GTTATGTTATTTCAAGTTGA+AGG | 0.457526 | 7.1:-5096913 | MS.gene025694:CDS |
GCTGAGGTTGATGGCGGAAG+GGG | 0.457562 | 7.1:-5096943 | MS.gene025694:CDS |
ATGTAAATTTGAAGGGCAAA+GGG | 0.462707 | 7.1:-5097608 | MS.gene025694:CDS |
ATGGAAATTACCTGTTTATG+TGG | 0.465464 | 7.1:+5102611 | None:intergenic |
TCTTGGAGAGGGGATGGAAA+TGG | 0.467748 | 7.1:-5104502 | MS.gene025694:CDS |
CCCAACTAGGTGTCAAAGCT+GGG | 0.468219 | 7.1:-5102905 | MS.gene025694:intron |
ATGTGAAAGCAGAGGACCTT+CGG | 0.473982 | 7.1:-5102844 | MS.gene025694:CDS |
AGGCTGAGGTTGATGGCGGA+AGG | 0.474494 | 7.1:-5096945 | MS.gene025694:CDS |
TCTAATTGCATCAGGACCTT+AGG | 0.478487 | 7.1:-5103541 | MS.gene025694:intron |
AGACCTTATGACAGTTAAAA+CGG | 0.479370 | 7.1:-5100712 | MS.gene025694:CDS |
CATGTGCGTCGAAATCTCCT+AGG | 0.479666 | 7.1:-5104456 | MS.gene025694:CDS |
ATCCACTGTTACCTCTCCAC+TGG | 0.480367 | 7.1:+5099280 | None:intergenic |
CGTGCATCATGTAAATTTGA+AGG | 0.483447 | 7.1:-5097616 | MS.gene025694:CDS |
TTGTTGGCAACATGAGCTCT+AGG | 0.486743 | 7.1:-5099361 | MS.gene025694:CDS |
ACTGTCCTTCAGAGTAAGAA+TGG | 0.489568 | 7.1:-5097681 | MS.gene025694:CDS |
GATCAGGAAGCTTACCTCTT+CGG | 0.489957 | 7.1:+5097421 | None:intergenic |
CTCTAGAGTAGATCAAATAC+CGG | 0.491186 | 7.1:-5096759 | MS.gene025694:CDS |
CAAAGGGGACATGATGCTGC+AGG | 0.497067 | 7.1:-5097592 | MS.gene025694:CDS |
GCTTGGACACCCAAGGTCAA+TGG | 0.497685 | 7.1:-5097654 | MS.gene025694:CDS |
GGCTGAGGTTGATGGCGGAA+GGG | 0.499777 | 7.1:-5096944 | MS.gene025694:CDS |
GAATTCGTTACTGGCTTGGT+TGG | 0.500544 | 7.1:-5099654 | MS.gene025694:CDS |
CATGTTCTGGGGTTGATCCA+TGG | 0.504046 | 7.1:-5100142 | MS.gene025694:CDS |
CTTGAATCATATTGGCGACA+TGG | 0.505746 | 7.1:+5097565 | None:intergenic |
ACTTTCTCAGTGATTCTGAC+GGG | 0.507221 | 7.1:-5097809 | MS.gene025694:CDS |
CTCAACCGGATGAATGATGA+AGG | 0.509670 | 7.1:+5103297 | None:intergenic |
CGAACCCTTCATCATTCATC+CGG | 0.509821 | 7.1:-5103302 | MS.gene025694:CDS |
GAGTGGCAAGAAGAGTTTGT+TGG | 0.510210 | 7.1:-5099377 | MS.gene025694:CDS |
AGAGTAAGAATGGAAGTGCT+TGG | 0.510899 | 7.1:-5097671 | MS.gene025694:CDS |
GGTTGATGGCGGAAGGGGAA+TGG | 0.511538 | 7.1:-5096938 | MS.gene025694:CDS |
TACCGGCTTTCTTGCGAGCA+CGG | 0.511790 | 7.1:-5104428 | MS.gene025694:CDS |
TTCATCCGGTTGAGGTTGCA+CGG | 0.513436 | 7.1:-5103288 | MS.gene025694:CDS |
GGCTGAGGTCGCTACAGCAT+TGG | 0.515456 | 7.1:-5097121 | MS.gene025694:CDS |
TTATCGTCAAATTAGCAGAC+AGG | 0.517261 | 7.1:-5102667 | MS.gene025694:CDS |
ATTAAACCAAAGCCGTGCGT+TGG | 0.519871 | 7.1:-5100302 | MS.gene025694:CDS |
TGCAATTCTTGGAGAGGGGA+TGG | 0.519916 | 7.1:-5104508 | MS.gene025694:CDS |
TGAGATTAACCAAATTGCAC+AGG | 0.524101 | 7.1:-5100438 | MS.gene025694:intron |
TCATATTCCGACAAAGCACT+TGG | 0.525417 | 7.1:-5103804 | MS.gene025694:CDS |
AAATATAAAGAAGTCCTGCC+AGG | 0.526449 | 7.1:-5097531 | MS.gene025694:CDS |
GATGGTCTACTGGCTGTAGT+TGG | 0.526752 | 7.1:-5096727 | MS.gene025694:CDS |
CATTGTGGAAGGAGAGACTA+AGG | 0.527478 | 7.1:-5103037 | MS.gene025694:intron |
GCATTTGCAAGCACTCGTGC+AGG | 0.528305 | 7.1:+5098916 | None:intergenic |
CTGTAGTTGGCCAAGCCTGA+TGG | 0.529497 | 7.1:-5096714 | MS.gene025694:CDS |
CAACAAGATGGTAGCTGCAA+AGG | 0.530841 | 7.1:-5099068 | MS.gene025694:intron |
GTTTCGTGGATTAACCTGTA+AGG | 0.534166 | 7.1:+5100666 | None:intergenic |
CATGTAAATTTGAAGGGCAA+AGG | 0.535165 | 7.1:-5097609 | MS.gene025694:CDS |
CTCATGTTCTTTGAATAGGT+CGG | 0.536108 | 7.1:+5100960 | None:intergenic |
GAATAGGGGTCCAGATTCCA+TGG | 0.537999 | 7.1:+5100125 | None:intergenic |
TGCATACAACAGATAACCAT+TGG | 0.538972 | 7.1:+5097448 | None:intergenic |
GCCAACTTTCTAAACCTGGC+AGG | 0.545096 | 7.1:+5097517 | None:intergenic |
TGCAAGACACAAAATAATGA+AGG | 0.547606 | 7.1:-5098008 | MS.gene025694:intron |
GCTTGCCAACTTTCTAAACC+TGG | 0.549616 | 7.1:+5097513 | None:intergenic |
AGCCGTGCTCGCAAGAAAGC+CGG | 0.550935 | 7.1:+5104426 | None:intergenic |
TTTGTACCCATTAGGTTTAG+GGG | 0.551930 | 7.1:+5099954 | None:intergenic |
TATTTCAGGCATGATGGCTG+AGG | 0.552186 | 7.1:-5097136 | MS.gene025694:intron |
AGAAAGCCGGTAAGAACCCT+AGG | 0.552414 | 7.1:+5104439 | None:intergenic |
GATACGAGATCACGGGCCTA+AGG | 0.552517 | 7.1:+5103525 | None:intergenic |
ACTGTTACAAGAGATCTTCT+GGG | 0.552683 | 7.1:-5099326 | MS.gene025694:CDS |
CACTTCCATTCTTACTCTGA+AGG | 0.552893 | 7.1:+5097676 | None:intergenic |
TACAACAGATAACCATTGGA+TGG | 0.554913 | 7.1:+5097452 | None:intergenic |
GCGTACTCTGAGTGCAATGT+TGG | 0.561487 | 7.1:+5099575 | None:intergenic |
CACTGAAATTGGCAACAAGA+TGG | 0.562829 | 7.1:-5099080 | MS.gene025694:CDS |
ACTTCCAGGGGAAAACTCGC+TGG | 0.564635 | 7.1:+5103683 | None:intergenic |
AATGGATTTGATAGCTGAGA+GGG | 0.567318 | 7.1:-5099703 | MS.gene025694:CDS |
GGGTAAGTGGTTACCAGCTG+TGG | 0.569013 | 7.1:+5100260 | None:intergenic |
GACTTTCTCAGTGATTCTGA+CGG | 0.576627 | 7.1:-5097810 | MS.gene025694:CDS |
TGCTGGATTACTTCATGACA+CGG | 0.579642 | 7.1:-5103124 | MS.gene025694:CDS |
GAAATTACCTGTTTATGTGG+AGG | 0.581208 | 7.1:+5102614 | None:intergenic |
TAAACCAAAGCCGTGCGTTG+GGG | 0.582851 | 7.1:-5100300 | MS.gene025694:CDS |
ATGTATGCAATTCTTGGAGA+GGG | 0.584331 | 7.1:-5104513 | MS.gene025694:CDS |
TGTTGGCAACATGAGCTCTA+GGG | 0.586013 | 7.1:-5099360 | MS.gene025694:CDS |
GTCTTTGTATTTACACCCAG+TGG | 0.587156 | 7.1:-5099296 | MS.gene025694:CDS |
ACTCACCACACAAGAACATA+CGG | 0.588943 | 7.1:+5097083 | None:intergenic |
TTCCCCTGGAAGTTTGTGGG+AGG | 0.589656 | 7.1:-5103673 | MS.gene025694:intron |
GCTTGCAAATGCAGAAGTTG+TGG | 0.591891 | 7.1:-5098905 | MS.gene025694:CDS |
TGTACAGAATAGCATTGCAA+TGG | 0.595760 | 7.1:-5101310 | MS.gene025694:intron |
GCATTGCAGCTCACTATAGT+GGG | 0.596921 | 7.1:-5099680 | MS.gene025694:CDS |
AAAGGCCCAACCCCAACGCA+CGG | 0.597406 | 7.1:+5100290 | None:intergenic |
GTACCTCCCACAAACTTCCA+GGG | 0.597986 | 7.1:+5103670 | None:intergenic |
TTAGGTTTAATGCAGGTCAA+CGG | 0.603196 | 7.1:-5098952 | MS.gene025694:intron |
ACATACAGATCTAGGAATAG+GGG | 0.604280 | 7.1:+5100111 | None:intergenic |
GGAGGAAGATACGAGATCAC+GGG | 0.606559 | 7.1:+5103518 | None:intergenic |
TAGAAGGGCATTCCATCCAA+TGG | 0.607450 | 7.1:-5097464 | MS.gene025694:CDS |
AGGAGGAAGATACGAGATCA+CGG | 0.607622 | 7.1:+5103517 | None:intergenic |
ATGTGCGTCGAAATCTCCTA+GGG | 0.610172 | 7.1:-5104455 | MS.gene025694:CDS |
GTGCATCATGTAAATTTGAA+GGG | 0.610778 | 7.1:-5097615 | MS.gene025694:CDS |
TGGAAGTGCTTGGACACCCA+AGG | 0.611288 | 7.1:-5097661 | MS.gene025694:CDS |
TAGATTAAGAATCTTCCTCA+AGG | 0.612482 | 7.1:-5099136 | MS.gene025694:CDS |
AATGTTTCTGGCTATGACAG+AGG | 0.612713 | 7.1:-5102819 | MS.gene025694:CDS |
TGTATTTACACCCAGTGGAG+AGG | 0.615293 | 7.1:-5099291 | MS.gene025694:intron |
ACTAACTCCAGTTCTTTAGG+AGG | 0.618244 | 7.1:+5103500 | None:intergenic |
ATCCCAAGCAACTTTGCCAA+AGG | 0.618298 | 7.1:+5101267 | None:intergenic |
CCTCGTGGCACAATATAGAA+GGG | 0.619462 | 7.1:-5097479 | MS.gene025694:CDS |
AAAGGGGACATGATGCTGCA+GGG | 0.620819 | 7.1:-5097591 | MS.gene025694:CDS |
AAACTCGCTGGCAACGTCCG+AGG | 0.623661 | 7.1:+5103695 | None:intergenic |
GAAAATATTATTGAACGGTG+TGG | 0.624304 | 7.1:-5097730 | MS.gene025694:CDS |
TCCACTGTTACCTCTCCACT+GGG | 0.626056 | 7.1:+5099281 | None:intergenic |
GGCTCAATGCTATTAGAGAG+TGG | 0.627954 | 7.1:-5099394 | MS.gene025694:CDS |
AGATTTGCTATCATGTTCTG+GGG | 0.632012 | 7.1:-5100153 | MS.gene025694:CDS |
ACAGTGCGTCACATTGTGGA+AGG | 0.639089 | 7.1:-5103048 | MS.gene025694:CDS |
TTCTGTAGTGATATCAGCAG+CGG | 0.640815 | 7.1:+5097842 | None:intergenic |
TGCTACAGTGCGTCACATTG+TGG | 0.642347 | 7.1:-5103052 | MS.gene025694:CDS |
CTTTCTCAGTGATTCTGACG+GGG | 0.642676 | 7.1:-5097808 | MS.gene025694:CDS |
TGTAAATTTGAAGGGCAAAG+GGG | 0.645718 | 7.1:-5097607 | MS.gene025694:CDS |
ACATACGGCTATGTCTGAAG+TGG | 0.647289 | 7.1:+5097098 | None:intergenic |
AAATCCTGAAGATTATGCAA+AGG | 0.647444 | 7.1:-5100998 | MS.gene025694:CDS |
AGTAGCTCCAAACATAAAAG+GGG | 0.650201 | 7.1:-5097753 | MS.gene025694:CDS |
CCCTTCTATATTGTGCCACG+AGG | 0.652703 | 7.1:+5097479 | None:intergenic |
TCTAGCATTCAAGAACGCCA+TGG | 0.653651 | 7.1:+5096687 | None:intergenic |
TCAATCACAGTAGCACCTTG+AGG | 0.657313 | 7.1:+5099121 | None:intergenic |
TCTAGAGTAGATCAAATACC+GGG | 0.659498 | 7.1:-5096758 | MS.gene025694:CDS |
GTTGTATGCATAGACCGAAG+AGG | 0.660812 | 7.1:-5097435 | MS.gene025694:intron |
TAGCCAGAAACATTTGCCGA+AGG | 0.661863 | 7.1:+5102828 | None:intergenic |
GACCAGGCTGAGGTTGATGG+CGG | 0.663709 | 7.1:-5096949 | MS.gene025694:intron |
ACTTGGCGTCACACTTCACG+AGG | 0.666144 | 7.1:-5103787 | MS.gene025694:CDS |
GTAGACCATCCCAAAACACC+CGG | 0.672266 | 7.1:+5096740 | None:intergenic |
TGTTCAAGATGTGAAAGCAG+AGG | 0.675037 | 7.1:-5102852 | MS.gene025694:CDS |
TACCTCCCACAAACTTCCAG+GGG | 0.676489 | 7.1:+5103671 | None:intergenic |
GTTTCTGGCTATGACAGAGG+AGG | 0.682217 | 7.1:-5102816 | MS.gene025694:intron |
CATAGCCGTATGTTCTTGTG+TGG | 0.682854 | 7.1:-5097088 | MS.gene025694:intron |
AAATGGATTTGATAGCTGAG+AGG | 0.682911 | 7.1:-5099704 | MS.gene025694:CDS |
GTTGGAAGTGCTGTGCCCAG+TGG | 0.683907 | 7.1:-5099636 | MS.gene025694:CDS |
CCAACTAGGTGTCAAAGCTG+GGG | 0.684172 | 7.1:-5102904 | MS.gene025694:intron |
CCAAGCCTGATGGAAAACCA+TGG | 0.686242 | 7.1:-5096704 | MS.gene025694:CDS |
TCAACCGGATGAATGATGAA+GGG | 0.689425 | 7.1:+5103298 | None:intergenic |
GTAGCTCCAAACATAAAAGG+GGG | 0.697648 | 7.1:-5097752 | MS.gene025694:CDS |
GGTTGCAACATGCTAAAACA+CGG | 0.702738 | 7.1:-5098033 | MS.gene025694:CDS |
AATGTATGCAATTCTTGGAG+AGG | 0.707152 | 7.1:-5104514 | MS.gene025694:CDS |
TTGGCATTTAAAGCTCACGA+TGG | 0.719107 | 7.1:-5103343 | MS.gene025694:CDS |
CTTGGCGTCACACTTCACGA+GGG | 0.722443 | 7.1:-5103786 | MS.gene025694:CDS |
ATGGATTTGATAGCTGAGAG+GGG | 0.725531 | 7.1:-5099702 | MS.gene025694:CDS |
TGTATGCAATTCTTGGAGAG+GGG | 0.729175 | 7.1:-5104512 | MS.gene025694:CDS |
GATGGTCAGAAAAGACGCAG+CGG | 0.742743 | 7.1:-5103325 | MS.gene025694:CDS |
AAGCCCATAAAATTGCCTCG+TGG | 0.756087 | 7.1:-5097494 | MS.gene025694:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 5096688 | 5104856 | 5096688 | ID=MS.gene025694 |
chr7.1 | mRNA | 5096688 | 5104856 | 5096688 | ID=MS.gene025694.t1;Parent=MS.gene025694 |
chr7.1 | exon | 5104832 | 5104856 | 5104832 | ID=MS.gene025694.t1.exon1;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5104832 | 5104856 | 5104832 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5104366 | 5104553 | 5104366 | ID=MS.gene025694.t1.exon2;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5104366 | 5104553 | 5104366 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5103674 | 5103853 | 5103674 | ID=MS.gene025694.t1.exon3;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5103674 | 5103853 | 5103674 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5103484 | 5103549 | 5103484 | ID=MS.gene025694.t1.exon4;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5103484 | 5103549 | 5103484 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5103273 | 5103365 | 5103273 | ID=MS.gene025694.t1.exon5;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5103273 | 5103365 | 5103273 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5103038 | 5103169 | 5103038 | ID=MS.gene025694.t1.exon6;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5103038 | 5103169 | 5103038 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5102817 | 5102918 | 5102817 | ID=MS.gene025694.t1.exon7;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5102817 | 5102918 | 5102817 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5102622 | 5102699 | 5102622 | ID=MS.gene025694.t1.exon8;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5102622 | 5102699 | 5102622 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5101254 | 5101325 | 5101254 | ID=MS.gene025694.t1.exon9;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5101254 | 5101325 | 5101254 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5100945 | 5101052 | 5100945 | ID=MS.gene025694.t1.exon10;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5100945 | 5101052 | 5100945 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5100681 | 5100778 | 5100681 | ID=MS.gene025694.t1.exon11;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5100681 | 5100778 | 5100681 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5100439 | 5100499 | 5100439 | ID=MS.gene025694.t1.exon12;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5100439 | 5100499 | 5100439 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5100274 | 5100336 | 5100274 | ID=MS.gene025694.t1.exon13;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5100274 | 5100336 | 5100274 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5100117 | 5100173 | 5100117 | ID=MS.gene025694.t1.exon14;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5100117 | 5100173 | 5100117 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5099894 | 5099995 | 5099894 | ID=MS.gene025694.t1.exon15;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5099894 | 5099995 | 5099894 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5099581 | 5099739 | 5099581 | ID=MS.gene025694.t1.exon16;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5099581 | 5099739 | 5099581 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5099292 | 5099423 | 5099292 | ID=MS.gene025694.t1.exon17;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5099292 | 5099423 | 5099292 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5099069 | 5099155 | 5099069 | ID=MS.gene025694.t1.exon18;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5099069 | 5099155 | 5099069 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5098888 | 5098959 | 5098888 | ID=MS.gene025694.t1.exon19;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5098888 | 5098959 | 5098888 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5098009 | 5098095 | 5098009 | ID=MS.gene025694.t1.exon20;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5098009 | 5098095 | 5098009 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5097436 | 5097889 | 5097436 | ID=MS.gene025694.t1.exon21;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5097436 | 5097889 | 5097436 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5097089 | 5097150 | 5097089 | ID=MS.gene025694.t1.exon22;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5097089 | 5097150 | 5097089 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5096897 | 5096965 | 5096897 | ID=MS.gene025694.t1.exon23;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5096897 | 5096965 | 5096897 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
chr7.1 | exon | 5096688 | 5096792 | 5096688 | ID=MS.gene025694.t1.exon24;Parent=MS.gene025694.t1 |
chr7.1 | CDS | 5096688 | 5096792 | 5096688 | ID=cds.MS.gene025694.t1;Parent=MS.gene025694.t1 |
Gene Sequence |
Protein sequence |