AlfalfaGEDB | MS.gene025776

M. sativa cultivar XinJiangDaYe / MS.gene025776

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025776.t1	XP_003611243.1	93.4	682	44	1	1	681	1	682	8.20E-260	906.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025776.t1	Q93YN1	32.1	308	187	6	381	675	17	315	1.2e-41	172.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025776.t1	G7KG73	93.4	682	44	1	1	681	1	682	5.9e-260	906.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene025776	MS.gene95123	PPI
MS.gene025776	MS.gene016804	PPI
MS.gene025776	MS.gene071328	PPI
MS.gene025776	MS.gene81555	PPI
MS.gene025776	MS.gene98214	PPI
MS.gene025776	MS.gene98693	PPI
MS.gene025776	MS.gene010711	PPI
MS.gene025776	MS.gene43403	PPI
MS.gene025776	MS.gene43443	PPI
MS.gene025776	MS.gene39860	PPI

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025776.t1	MTR_5g011840	95.308	682	31	1	1	681	1	682	0.0	1337
MS.gene025776.t1	MTR_5g011840	89.883	682	30	2	1	681	1	644	0.0	1243
MS.gene025776.t1	MTR_5g011840	96.176	523	19	1	160	681	1	523	0.0	1038
MS.gene025776.t1	MTR_6g060230	54.717	689	270	7	10	674	7	677	0.0	739
MS.gene025776.t1	MTR_7g038690	53.019	679	294	8	6	675	4	666	0.0	686
MS.gene025776.t1	MTR_7g030070	50.957	679	292	9	6	675	4	650	0.0	649
MS.gene025776.t1	MTR_7g038690	48.454	679	270	10	6	675	4	611	0.0	592
MS.gene025776.t1	MTR_8g013025	94.375	160	9	0	522	681	487	646	5.78e-97	312
MS.gene025776.t1	MTR_3g093930	30.048	619	369	14	73	677	407	975	2.70e-69	244
MS.gene025776.t1	MTR_3g093930	33.473	239	130	6	25	235	40	277	1.22e-26	116

Showing 1 to 10 of 1,234 entries

Previous1 2 3 4 5…124Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025776.t1	AT4G22730	57.018	684	266	11	10	675	10	683	0.0	749
MS.gene025776.t1	AT2G45340	52.782	665	293	12	31	679	30	689	0.0	662
MS.gene025776.t1	AT5G51560	52.134	656	293	7	27	674	31	673	0.0	653
MS.gene025776.t1	AT4G22730	57.925	530	196	10	10	522	10	529	0.0	570
MS.gene025776.t1	AT3G56370	31.161	629	361	14	68	677	376	951	4.02e-72	252
MS.gene025776.t1	AT3G56370	36.150	213	128	7	25	232	26	235	9.51e-23	104
MS.gene025776.t1	AT3G56370	37.500	160	100	0	70	229	169	328	1.97e-22	103
MS.gene025776.t1	AT3G56370	35.542	166	103	2	73	237	123	285	1.61e-16	84.3
MS.gene025776.t1	AT3G56370	30.457	197	96	2	80	235	227	423	6.43e-16	82.4
MS.gene025776.t1	AT3G25560	28.144	668	336	18	25	674	40	581	9.42e-72	245

Showing 1 to 10 of 1,025 entries

Previous1 2 3 4 5…103Next

Find 160 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGTGGATGTGATTC+AGG	0.386467	5.3:-5229874	MS.gene025776:CDS
AAACTGGTTTAGATATTCAT+TGG	0.365203	5.3:+5231144	None:intergenic
AAATCCTCTCTTGATCCAGA+GGG	0.581086	5.3:-5232983	MS.gene025776:CDS
AAATCTTCTGCTTTCGTCGG+CGG	0.503558	5.3:+5231305	None:intergenic
AAATTCGCAGGTTCCGGGCG+AGG	0.478455	5.3:+5231454	None:intergenic
AAATTCTCGGCAACGTATAA+GGG	0.443320	5.3:-5231052	MS.gene025776:CDS
AACATCGTCTGCGAGAAGCT+TGG	0.496049	5.3:+5230184	None:intergenic
AACCATGGTTGTTTGCCCCT+TGG	0.396660	5.3:+5231590	None:intergenic
AACCATGGTTTATGTGGAGT+AGG	0.544063	5.3:-5231577	MS.gene025776:CDS
AACTTCCAAATGTGCAATAT+TGG	0.299538	5.3:+5231786	None:intergenic

Showing 1 to 10 of 160 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTCCAAATGTGCAATAT+TGG	+	chr5.3:5231147-5231166	None:intergenic	30.0%
AAGAGTGATATATACGCATT+TGG	-	chr5.3:5232847-5232866	MS.gene025776:CDS	30.0%
AAGGACTAAAAAAACAGCAA+GGG	+	chr5.3:5232342-5232361	None:intergenic	30.0%
AGAGACTAATTTCAACATGA+AGG	+	chr5.3:5232361-5232380	None:intergenic	30.0%
AGATAAAGAAGATACCTTAC+TGG	-	chr5.3:5230589-5230608	MS.gene025776:intron	30.0%
ATATTCATTGGATAATCCAC+CGG	+	chr5.3:5231777-5231796	None:intergenic	30.0%
ATCCAAAACAATTCTTTGTC+GGG	-	chr5.3:5231173-5231192	MS.gene025776:CDS	30.0%
ATGTTGCTGACATTTAAATC+TGG	+	chr5.3:5231410-5231429	None:intergenic	30.0%
ATTCCTTTATGATCAGGTAT+AGG	-	chr5.3:5232610-5232629	MS.gene025776:intron	30.0%
ATTGTGTAAGAGCAAATTCT+CGG	-	chr5.3:5231865-5231884	MS.gene025776:CDS	30.0%

Showing 1 to 10 of 236 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	5229845	5233107	5229845	ID=MS.gene025776
chr5.3	mRNA	5229845	5233107	5229845	ID=MS.gene025776.t1;Parent=MS.gene025776
chr5.3	exon	5232678	5233107	5232678	ID=MS.gene025776.t1.exon1;Parent=MS.gene025776.t1
chr5.3	CDS	5232678	5233107	5232678	ID=cds.MS.gene025776.t1;Parent=MS.gene025776.t1
chr5.3	exon	5231743	5232003	5231743	ID=MS.gene025776.t1.exon2;Parent=MS.gene025776.t1
chr5.3	CDS	5231743	5232003	5231743	ID=cds.MS.gene025776.t1;Parent=MS.gene025776.t1
chr5.3	exon	5230765	5231637	5230765	ID=MS.gene025776.t1.exon3;Parent=MS.gene025776.t1
chr5.3	CDS	5230765	5231637	5230765	ID=cds.MS.gene025776.t1;Parent=MS.gene025776.t1
chr5.3	exon	5229845	5230326	5229845	ID=MS.gene025776.t1.exon4;Parent=MS.gene025776.t1
chr5.3	CDS	5229845	5230326	5229845	ID=cds.MS.gene025776.t1;Parent=MS.gene025776.t1

Gene Sequence

>MS.gene025776

ATGAACTCCTTCCATCTCCTCTTTTCTATGTTTCTTTTCATTGTATTTACAACTTCACAAACTGTTCTTGGAAATGCAGAGTTAAGGGCTTTGATGGATTTGAAATCCTCTCTTGATCCAGAGGGAAAGATTCTTACCTCATGGATCAGTAATGGTAATCCATGTAGTGGTTCATTTGAAGGAGTTGCTTGCAATGAACATCGGAAAGTGGCTAATATCTCTTTGCAGGGAAAGGGACTTTCTGGTTCATTATCTTCAGCTGTGGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCATTATAACAATCTTTCTGGCGAGATACCATCACAGATTTCTAATCTTACTGAACTTGTTGATCTCTATCTTGATGTTAATAATCTTTCTGGAAGAATTCCTCCTGAGATTGGCAACATGGCTAGTCTCCAAGGTATGTATGTATAATTGTATACAGCACCGTTTTTTAGTATCAAGTTGTTAACACTTAACAGTAGTTTAATTTTGCAAGCACTTGTGAGTGTCAACAAGACCATATATTATATATAGTGTGGCACGAATAGTAGATACACTGAATCCATTAAGCATTTGATCAGAGGGATTTGATCATTGATCGGTGCCTATGAATAAATATACGTTAAAGATGTTAAATACTTAAATCCTTCAAATAGATATCAATTATCTCGTGAGATTAGTCTATGCTATTGCGTAAAGATATATTCTAATTTACACAAAAAATCATCATGTAGATAAAGAAGATACCTTACTGGCTCACTTAATTTTCGCTTACTAGTTTACACCTTTTACTGTTAAGTGAAAAAAACGGCACTTATGCTTTCAATGACATGTGGAAATGTTACTTTTACAACTGTTGAGTGTTTCTTTTGGTACATGACTTGACTATACGTGAGAGTGTGTATTGCTGTGTTGGATTTGAATAGATTTTGAAATCTCACGTGTCTTTGTGCATTGTACCCTTTTGATGGGCTCGGGGGGTTTTCAATGAGCCAACATCTTAGGAGTGTATGTTGATCCATCCAGGTTCAATTTTTAAGGTGCGTGTGTTTGGTTATGTGGCGACAAATTGATTTTGATTTGTTTATGCAGTACTTCAGTTGGGAGATAATCAATTGGTAGGGAATATACCTACACAGATGGGTTCCTTGAAGCAACTTACAACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTAGGGAACTTGGAAAATCTAAGCAGGCTAAATTTGAGCTTCAACAATTTCAGTGGTGCTATTCCGGCAACACTAGCCAATATTGCACATTTGGAAGTTCTAGACATCCAAAACAATTCTTTGTCGGGAACTGTTCCTTCTGGTACGCCTAATGTCTCACCTCACTTTCCAAAAAATTTTGGCATTCATCTTTGTGCATTATAGTTTGAATCCGCAGTAACATTTTGTTTTGAAATTGAAATTGAAGCGTTGAAGAGACTTGGGGAAGGATTCCAAGGGGCAAACAACCATGGTTTATGTGGAGTAGGGATTTCTACTTTGAGTGCTTGCAGCAAAGAACCAGATTTAAATGTCAGCAACATTGATACTTCGGATCAAGACCACCTCAAAAATAGTAATCCTGCAACGCCTCGCCCGGAACCTGCGAATTTCCAAATGCATTGTAACCAGACACATTGCTCAAAATCAAGAAGTGTTCCTATAATCATCACAGCGAGTGTTATAACCATCATCACCCTCACACTCATAGGTGCTGGATTGTTTACATTTGTCAAATACCGCCGACGAAAGCAGAAGATTTCATCAAACTCTTCTGAAGGGAAATTTAGTCCTCAGCAACCTAAAGAGTTATACCGAAAAAGTCCATCTACACTTGTTAATCTTGACTATTATAACGGATGTTGTCCAATGCCTGATGATCAAAATGCCGGTGGATTATCCAATGAATATCTAAACCAGTTTAGGTTTAATGTAGATGAAGTCGAATCTGCAACACAGTATTTTTCAGAAGTGAATTTATTGTGTAAGAGCAAATTCTCGGCAACGTATAAGGGAGTTCTCAGAGATGGCTCTCTTGTGGCCATCACAAGCATTAACATGTCATGCTGCAAAACTGAGGAAGCCGAATTTGTAAAGGGATTGAGCTTATTAACCTCACTTAGACATGAAAACGTTGTCAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGCTACCTTATCAACGACTTTGCTATGATGGGTGACCTGTCTCAATATCTTGACATAGAAGATAGAAGTGGCCATTTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTAAGCTGTTCATAATTGATGATATTTTCTTAAGAAATATATGGTACAAATGAAAGAAGTTTCCAAAAAAAAGTTCCATCAATGTCCTTTCTGAAACTGAATCACATCTGACAAAATTTCAGATATAATCATATAGTAGAAAGGACGTTGGCCCTTGCTGTTTTTTTAGTCCTTCATGTTGAAATTAGTCTCTGCAATACATGTGCAATATTCACTTTAGTCTTTATGTAGTATGTATTGGTGGGACTAAATATTTCAGGGACTGAAAAAAAGTAAGGACTTTAGGCCAAAAATTGCATATTTGCAAGGATTATAAACACTAAATATGTTTTGCAGGAACAAAAAGCAAGAAGTTGTATATTTGTATGGACCAAAAACATATTCAAACCTAATATCTATTTTCTTTTTGTTTGATACTTGCTATTCCTTTATGATCAGGTATAGGATATATACACAGCAATGAAGCAAGCAAACCTACGATAGTACACCAGAATATTTCAGTGGAGAATGTTCTCCTTGACAAAGATTTTAATCCATTGATCATGGATGCGGGACTTCCCAAGCTTCTCGCAGACGATGTTGTTTTCTCGGCTCTAAAAGTAAGTGCTGCAATGGGATACCTAGCTCCCGAATACATTACTACGGGACGCTTTACCGAAAAGAGTGATATATACGCATTTGGAGTTATTGTACTTCAAGTTTTATCTGGCAAGACGACGATAGGTGGTTCAATACGGACGGCATTTCAGTCTTTCAAATTTGATGATTGCATCGACACAAATCTTAAGGGAAAATATTCTAATTCTGAAGCAAGCATACTTACAAAGCTTGGAATGCAATGTATCCACGAGAGCCCCGATGAAAGACCAAACATGGTGGATGTGATTCAGGAGTTAAGCGTGTTTCCGGCTCATTCATAA

Protein sequence

>MS.gene025776.t1

MNSFHLLFSMFLFIVFTTSQTVLGNAELRALMDLKSSLDPEGKILTSWISNGNPCSGSFEGVACNEHRKVANISLQGKGLSGSLSSAVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNNLSGRIPPEIGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPLSLGNLENLSRLNLSFNNFSGAIPATLANIAHLEVLDIQNNSLSGTVPSALKRLGEGFQGANNHGLCGVGISTLSACSKEPDLNVSNIDTSDQDHLKNSNPATPRPEPANFQMHCNQTHCSKSRSVPIIITASVITIITLTLIGAGLFTFVKYRRRKQKISSNSSEGKFSPQQPKELYRKSPSTLVNLDYYNGCCPMPDDQNAGGLSNEYLNQFRFNVDEVESATQYFSEVNLLCKSKFSATYKGVLRDGSLVAITSINMSCCKTEEAEFVKGLSLLTSLRHENVVKLRGFCCSSSRGECYLINDFAMMGDLSQYLDIEDRSGHLLDWSKRVSIIKGIAKGIGYIHSNEASKPTIVHQNISVENVLLDKDFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRTAFQSFKFDDCIDTNLKGKYSNSEASILTKLGMQCIHESPDERPNMVDVIQELSVFPAHS