AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026010.t1 MTR_7g115340 97.566 452 11 0 40 491 59 510 0.0 892
MS.gene026010.t1 MTR_7g115340 98.643 442 6 0 50 491 1 442 0.0 885
MS.gene026010.t1 MTR_1g070380 57.451 463 166 13 48 490 116 567 3.23e-147 433
MS.gene026010.t1 MTR_1g070380 57.543 464 165 14 48 490 116 568 7.40e-146 429
MS.gene026010.t1 MTR_4g127380 41.918 365 180 8 84 437 32 375 1.86e-85 270
MS.gene026010.t1 MTR_2g038020 38.835 412 211 10 61 449 22 415 2.26e-82 263
MS.gene026010.t1 MTR_2g019090 25.641 351 220 8 95 437 311 628 1.92e-25 110
MS.gene026010.t1 MTR_2g019090 24.234 359 204 10 98 424 44 366 1.07e-14 77.0
MS.gene026010.t1 MTR_6g012630 36.257 171 99 4 95 255 46 216 2.68e-24 105
MS.gene026010.t1 MTR_6g012630 36.257 171 99 4 95 255 46 216 2.72e-24 106
MS.gene026010.t1 MTR_6g012630 36.257 171 99 4 95 255 46 216 3.81e-24 105
MS.gene026010.t1 MTR_7g080630 33.136 169 105 2 97 257 101 269 1.69e-23 100
MS.gene026010.t1 MTR_7g080630 33.136 169 105 2 97 257 101 269 2.80e-23 100
MS.gene026010.t1 MTR_7g080630 33.136 169 105 2 97 257 101 269 6.93e-23 100
MS.gene026010.t1 MTR_4g008080 26.289 388 226 14 95 437 226 598 3.99e-22 100
MS.gene026010.t1 MTR_7g011080 33.708 178 101 4 95 255 48 225 7.42e-22 99.4
MS.gene026010.t1 MTR_3g110650 25.281 356 238 9 97 437 313 655 1.72e-20 95.1
MS.gene026010.t1 MTR_4g093650 36.686 169 99 5 94 256 18 184 2.85e-18 88.2
MS.gene026010.t1 MTR_4g093650 23.797 374 237 12 95 442 265 616 3.65e-18 87.8
MS.gene026010.t1 MTR_2g019090 23.642 313 198 8 95 399 312 591 8.92e-16 80.5
MS.gene026010.t1 MTR_2g019090 23.955 359 206 9 98 424 44 367 1.12e-15 80.1
MS.gene026010.t1 MTR_5g031720 28.191 188 119 5 81 256 21 204 1.75e-15 79.3
MS.gene026010.t1 MTR_5g031720 24.931 361 215 11 97 442 276 595 3.89e-13 72.0
MS.gene026010.t1 MTR_2g009650 26.852 216 132 5 85 282 37 244 1.53e-14 76.6
MS.gene026010.t1 MTR_2g009650 24.706 170 123 1 95 259 330 499 3.06e-13 72.8
MS.gene026010.t1 MTR_4g116880 58.904 73 12 3 143 215 10 64 6.35e-14 67.0
MS.gene026010.t1 MTR_3g091800 23.926 163 117 2 97 259 332 487 7.79e-12 68.2
MS.gene026010.t1 MTR_3g091800 27.273 176 112 4 98 257 65 240 2.24e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026010.t1 AT3G04610 66.890 447 119 11 61 490 119 553 0.0 540
MS.gene026010.t1 AT3G04610 66.890 447 119 11 61 490 119 553 0.0 540
MS.gene026010.t1 AT3G04610 66.890 447 119 11 61 490 143 577 0.0 539
MS.gene026010.t1 AT3G04610 66.890 447 119 11 61 490 143 577 0.0 539
MS.gene026010.t1 AT4G26000 42.147 382 193 8 86 457 64 427 2.28e-91 287
MS.gene026010.t1 AT1G51580 26.923 364 223 10 95 437 275 616 7.71e-27 114
MS.gene026010.t1 AT5G15270 25.740 338 187 9 95 420 49 334 3.09e-24 106
MS.gene026010.t1 AT5G15270 25.683 183 132 3 81 262 270 449 9.83e-18 86.7
MS.gene026010.t1 AT5G15270 25.740 338 187 9 95 420 49 334 3.09e-24 106
MS.gene026010.t1 AT5G15270 25.683 183 132 3 81 262 270 449 9.83e-18 86.7
MS.gene026010.t1 AT5G15270 25.444 338 188 8 95 420 49 334 3.39e-24 106
MS.gene026010.t1 AT5G15270 25.683 183 132 3 81 262 270 449 1.10e-17 86.3
MS.gene026010.t1 AT1G14170 30.857 175 103 4 95 252 10 183 2.45e-18 87.8
MS.gene026010.t1 AT1G14170 29.651 172 113 4 100 267 240 407 1.18e-11 67.0
MS.gene026010.t1 AT1G14170 30.857 175 103 4 95 252 18 191 2.75e-18 87.8
MS.gene026010.t1 AT1G14170 30.818 159 104 3 100 256 248 402 1.26e-11 67.0
MS.gene026010.t1 AT1G14170 30.857 175 103 4 95 252 43 216 3.22e-18 87.8
MS.gene026010.t1 AT1G14170 29.651 172 113 4 100 267 273 440 9.78e-12 67.4
MS.gene026010.t1 AT4G18375 26.184 359 207 13 97 425 37 367 3.98e-18 87.8
MS.gene026010.t1 AT4G18375 26.184 359 207 13 97 425 37 367 4.73e-18 87.8
MS.gene026010.t1 AT5G64390 24.051 395 242 9 97 437 453 843 1.76e-17 86.3
MS.gene026010.t1 AT5G64390 28.293 205 120 5 94 281 45 239 1.01e-15 80.9
MS.gene026010.t1 AT5G53060 22.543 346 246 5 92 437 321 644 2.23e-16 82.4
MS.gene026010.t1 AT5G53060 25.510 196 122 5 85 257 57 251 2.10e-12 70.1
MS.gene026010.t1 AT5G64390 28.293 205 120 5 94 281 45 239 1.10e-15 80.5
MS.gene026010.t1 AT5G64390 25.434 173 122 2 97 264 453 623 6.91e-13 71.6
MS.gene026010.t1 AT5G64390 28.922 204 120 5 94 281 45 239 1.11e-15 80.5
MS.gene026010.t1 AT5G64390 25.434 173 122 2 97 264 453 623 7.36e-13 71.6
MS.gene026010.t1 AT5G46190 25.926 351 183 14 97 409 45 356 1.08e-13 73.9
MS.gene026010.t1 AT5G46190 25.926 351 183 14 97 409 45 356 1.46e-13 73.6
MS.gene026010.t1 AT5G46190 25.926 351 183 14 97 409 45 356 1.46e-13 73.6
MS.gene026010.t1 AT5G46190 25.926 351 183 14 97 409 45 356 1.46e-13 73.6
MS.gene026010.t1 AT5G53060 25.510 196 122 5 85 257 57 251 1.61e-12 70.1
MS.gene026010.t1 AT5G53060 25.000 168 122 2 92 259 321 484 1.95e-11 66.6

Find 177 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATACAATTTGATGCTTCT+TGG 0.178221 7.1:+2097162 None:intergenic
TCACAAGCAGGAAGTTTAAT+TGG 0.191863 7.1:-2097212 MS.gene026010:CDS
AGAGATGTAAATTAGAAGTT+TGG 0.227622 7.1:+2100159 None:intergenic
TCGTACGCTGATGCTGTTAT+TGG 0.256618 7.1:-2094399 MS.gene026010:CDS
GGAGCCTATGGTGCAGTTTA+TGG 0.267209 7.1:-2093296 MS.gene026010:CDS
GCAGTTTATGGTGCAAATTA+TGG 0.271012 7.1:-2093284 MS.gene026010:CDS
TGGTGGGGTGGTGGTGGCAC+TGG 0.284770 7.1:+2095051 None:intergenic
CAAAAGGTTGGTGGGATAAT+TGG 0.293067 7.1:-2099749 MS.gene026010:CDS
CACAGCCCGTTCTGAAGTTC+CGG 0.314112 7.1:+2099655 None:intergenic
GATATAGCTTATATTTGTTC+CGG 0.327385 7.1:+2094371 None:intergenic
GCTGGTGGAGGTCCTGGATT+TGG 0.327478 7.1:-2094994 MS.gene026010:CDS
ACGAAGTGATGAAGGATAAT+AGG 0.336901 7.1:+2100278 None:intergenic
GAAGATGGAATCTAGGGTTT+TGG 0.338192 7.1:+2100195 None:intergenic
CAGTTTATGGTGCAAATTAT+GGG 0.346952 7.1:-2093283 MS.gene026010:CDS
AACTCCTCTTGTTTCTTGTA+TGG 0.349928 7.1:+2094323 None:intergenic
CCCCATGATTGGTGGGGTGG+TGG 0.363121 7.1:+2095042 None:intergenic
GATGCTCCTTCAGGTGTGGC+TGG 0.367185 7.1:-2097266 MS.gene026010:CDS
GGCACTGGCATGTGCTCCAC+AGG 0.369095 7.1:+2095066 None:intergenic
GAATGAAGAAGATGGAATCT+AGG 0.369203 7.1:+2100188 None:intergenic
CAGCCCGGCCATTTCTTCTC+AGG 0.371179 7.1:+2099809 None:intergenic
CCAAATGCTGGTGGAGGTCC+TGG 0.372713 7.1:-2095000 MS.gene026010:CDS
CCAATCATGGGGTCCACCTC+AGG 0.379209 7.1:-2095031 MS.gene026010:CDS
CATGATTGGTGGGGTGGTGG+TGG 0.386854 7.1:+2095045 None:intergenic
GAGATGTAAATTAGAAGTTT+GGG 0.387707 7.1:+2100160 None:intergenic
GAGTAAATTACCTTGATTGC+AGG 0.388670 7.1:+2100134 None:intergenic
GCTCGTGTTAAGATTCTTGA+TGG 0.388997 7.1:-2099683 MS.gene026010:CDS
GATGGGTTAGATGCTCCTTC+AGG 0.390825 7.1:-2097275 MS.gene026010:CDS
GACAGGGTGGTTGAAGTAGT+AGG 0.398062 7.1:-2095290 MS.gene026010:CDS
GCTCATAAACGGTTAATTGA+TGG 0.400721 7.1:-2097293 MS.gene026010:CDS
CACTGCCTTGTGCACTCCAA+TGG 0.404296 7.1:+2095262 None:intergenic
AAACTTCCTGCTTGTGAGGC+TGG 0.410456 7.1:+2097218 None:intergenic
CACCACCACCCCACCAATCA+TGG 0.417160 7.1:-2095044 MS.gene026010:CDS
CTGAGAAGAAATGGCCGGGC+TGG 0.417620 7.1:-2099808 MS.gene026010:CDS
CCACCTGTTTGTTGCTGCGC+CGG 0.419210 7.1:+2093401 None:intergenic
GCACCGGCGCAGCAACAAAC+AGG 0.420300 7.1:-2093404 MS.gene026010:CDS
GAATTGTATCCTTGGTCTGC+AGG 0.425427 7.1:+2093374 None:intergenic
CCAGGACCTCCACCAGCATT+TGG 0.425866 7.1:+2095000 None:intergenic
TCTCTTCCACCTGCTGTGGA+TGG 0.429032 7.1:-2097326 MS.gene026010:CDS
AATGTTGGTTCCTGCTCAAA+AGG 0.429285 7.1:-2099765 MS.gene026010:CDS
TGCTGTGGATGGCTTATTGA+AGG 0.431392 7.1:-2097315 MS.gene026010:CDS
GCCTCCCGGAACTTCAGAAC+GGG 0.433855 7.1:-2099660 MS.gene026010:CDS
TCCTTCAGGTGTGGCTGGGA+AGG 0.436543 7.1:-2097261 MS.gene026010:CDS
TAATTATCAACTTGCCTTGG+AGG 0.437730 7.1:+2094949 None:intergenic
CACAAGCAGGAAGTTTAATT+GGG 0.440852 7.1:-2097211 MS.gene026010:CDS
AGCTGAAATGCCTCCTCCAT+TGG 0.441524 7.1:-2094917 MS.gene026010:CDS
AAGAAATGGCCGGGCTGGCC+TGG 0.444619 7.1:-2099803 MS.gene026010:CDS
AAATTGTATAGTCAGAGTTC+TGG 0.448147 7.1:-2097150 MS.gene026010:CDS
CAAGAAACAAGAGGAGTTCC+TGG 0.449581 7.1:-2094318 MS.gene026010:CDS
CAACCACCCTGTCATCTTGA+AGG 0.450885 7.1:+2095300 None:intergenic
GAGGTGGACCCCATGATTGG+TGG 0.454647 7.1:+2095034 None:intergenic
CCAGGACATGCTGGAGCCTA+TGG 0.454711 7.1:-2093308 MS.gene026010:CDS
ACAGGGTGGTTGAAGTAGTA+GGG 0.462789 7.1:-2095289 MS.gene026010:CDS
ACTGCCTTGTGCACTCCAAT+GGG 0.463713 7.1:+2095263 None:intergenic
AGGTGGACCCCATGATTGGT+GGG 0.466069 7.1:+2095035 None:intergenic
ACAGCCCGTTCTGAAGTTCC+GGG 0.466480 7.1:+2099656 None:intergenic
AAGATTCTTGATGGGCCTCC+CGG 0.466560 7.1:-2099674 MS.gene026010:CDS
AATTGTATAGTCAGAGTTCT+GGG 0.468142 7.1:-2097149 MS.gene026010:CDS
TCGTTGAGCCTGAGAAGAAA+TGG 0.468519 7.1:-2099817 MS.gene026010:CDS
GATCTTTCTCCAGATGCAAA+TGG 0.469181 7.1:-2095100 MS.gene026010:intron
CCATAGGCTCCAGCATGTCC+TGG 0.470428 7.1:+2093308 None:intergenic
GGACCCCATGATTGGTGGGG+TGG 0.475178 7.1:+2095039 None:intergenic
TATGGAAGAGATGCTTCAAT+AGG 0.476740 7.1:-2094865 MS.gene026010:CDS
GCTTATTGAAGGCTCATAAA+CGG 0.481382 7.1:-2097304 MS.gene026010:CDS
ACATCTCTACCCTGCAATCA+AGG 0.483716 7.1:-2100144 MS.gene026010:intron
CTCATAAACGGTTAATTGAT+GGG 0.485762 7.1:-2097292 MS.gene026010:CDS
TTCAATAAGCCATCCACAGC+AGG 0.487643 7.1:+2097317 None:intergenic
GTTCCTGCTCAAAAGGTTGG+TGG 0.488563 7.1:-2099758 MS.gene026010:CDS
ACAGCATCAGCGTACGATAG+AGG 0.489668 7.1:+2094405 None:intergenic
GGCTCCAGCATGTCCTGGAT+TGG 0.489729 7.1:+2093313 None:intergenic
TTCTTCTCTTCCACCTGCTG+TGG 0.494945 7.1:-2097330 MS.gene026010:CDS
TTCTTCTCAGGCTCAACGAT+CGG 0.495988 7.1:+2099821 None:intergenic
CATTGGAGTGCACAAGGCAG+TGG 0.499275 7.1:-2095261 MS.gene026010:CDS
CAGGGTAGGAATTGTATCCT+TGG 0.499993 7.1:+2093366 None:intergenic
AACAGCACAGCAATTGATAC+AGG 0.502245 7.1:-2094253 MS.gene026010:intron
ACCACCACCCCACCAATCAT+GGG 0.502652 7.1:-2095043 MS.gene026010:CDS
CTTGGAGGTGGCATGAATTG+AGG 0.503745 7.1:+2094964 None:intergenic
CCTGAGGTGGACCCCATGAT+TGG 0.504891 7.1:+2095031 None:intergenic
GCGTCACCACCTTCCAATCC+AGG 0.508103 7.1:-2093326 MS.gene026010:CDS
CATCATGGTATATCCGCCTA+TGG 0.508306 7.1:-2094883 MS.gene026010:CDS
ATGCTCCTTCAGGTGTGGCT+GGG 0.509317 7.1:-2097265 MS.gene026010:CDS
CAGGGTCTCCCACCAAATGC+TGG 0.510314 7.1:-2095012 MS.gene026010:CDS
CTCCCACCAAATGCTGGTGG+AGG 0.511292 7.1:-2095006 MS.gene026010:CDS
TTGTGAGAACGAAGTGATGA+AGG 0.516786 7.1:+2100270 None:intergenic
TATGGCGGAAGCTGCAGCAC+CGG 0.517885 7.1:-2093420 MS.gene026010:CDS
TACTCAGTCTGCACCTTCCA+TGG 0.518367 7.1:-2094824 MS.gene026010:CDS
ACACTCTCACCAGGCCAGCC+CGG 0.521278 7.1:+2099794 None:intergenic
TTATCAACTTGCCTTGGAGG+TGG 0.522949 7.1:+2094952 None:intergenic
AATTAAACTTCCTGCTTGTG+AGG 0.525068 7.1:+2097214 None:intergenic
CCAGCATGTCCTGGATTGGA+AGG 0.525197 7.1:+2093317 None:intergenic
AATGAAGAAGATGGAATCTA+GGG 0.525306 7.1:+2100189 None:intergenic
TAGTAATTATCAACTTGCCT+TGG 0.526071 7.1:+2094946 None:intergenic
GGGTGCGAGAATGAAGAAGA+TGG 0.528572 7.1:+2100180 None:intergenic
GGAACAAAATGAGTCTGAAA+AGG 0.528718 7.1:-2099855 MS.gene026010:CDS
ATTTCAACTGTCATCTCCCC+AGG 0.529708 7.1:+2094300 None:intergenic
AGATGACAGTTGAAATCAGC+GGG 0.541840 7.1:-2094293 MS.gene026010:CDS
CATAGGCGGATATACCATGA+TGG 0.542292 7.1:+2094884 None:intergenic
TTCTGGCAGTGGAAATTCCA+TGG 0.543536 7.1:-2099933 MS.gene026010:intron
CCTTCCAATCCAGGACATGC+TGG 0.543630 7.1:-2093317 MS.gene026010:CDS
CCGGCGCAGCAACAAACAGG+TGG 0.553534 7.1:-2093401 MS.gene026010:CDS
AATGGAGGAGGCATTTCAGC+TGG 0.554857 7.1:+2094919 None:intergenic
GGCTGTTTGTCCAATGGAGG+AGG 0.557347 7.1:+2094907 None:intergenic
ATAGTCAGAGTTCTGGGAGC+AGG 0.562698 7.1:-2097143 MS.gene026010:intron
GCATAGACAGAACTATGAGC+AGG 0.562952 7.1:+2093347 None:intergenic
ACCTTCCCAGCCACACCTGA+AGG 0.563518 7.1:+2097260 None:intergenic
CTCAATTCATGCCACCTCCA+AGG 0.565069 7.1:-2094963 MS.gene026010:CDS
TGTTTCTTGTATGGTAACAG+TGG 0.565082 7.1:+2094332 None:intergenic
TTCCTGCTCAAAAGGTTGGT+GGG 0.565402 7.1:-2099757 MS.gene026010:CDS
GAGCCTGAGAAGAAATGGCC+GGG 0.566112 7.1:-2099812 MS.gene026010:CDS
TGAGCCTGAGAAGAAATGGC+CGG 0.566245 7.1:-2099813 MS.gene026010:CDS
GAAAAGTACCTGTGTGACCA+TGG 0.567170 7.1:+2094807 None:intergenic
GGACCTCCACCAGCATTTGG+TGG 0.567350 7.1:+2095003 None:intergenic
TGAGGAGCAAGTCCAAATCC+AGG 0.567540 7.1:+2094982 None:intergenic
GGCCTCCCGGAACTTCAGAA+CGG 0.568253 7.1:-2099661 MS.gene026010:CDS
TGATGAAGGATAATAGGTGG+TGG 0.568994 7.1:+2100284 None:intergenic
ATAGGCGGATATACCATGAT+GGG 0.572279 7.1:+2094885 None:intergenic
GGAAGGTGCAGACTGAGTAT+TGG 0.573422 7.1:+2094828 None:intergenic
GCACTGGCATGTGCTCCACA+GGG 0.573640 7.1:+2095067 None:intergenic
TATTGAAGCATCTCTTCCAT+AGG 0.574272 7.1:+2094867 None:intergenic
CTCGTGTTAAGATTCTTGAT+GGG 0.574443 7.1:-2099682 MS.gene026010:CDS
AAGAAACAAGAGGAGTTCCT+GGG 0.578584 7.1:-2094317 MS.gene026010:CDS
GGAGGAGGCATTTCAGCTGG+TGG 0.580842 7.1:+2094922 None:intergenic
TTGGTTCCTGCTCAAAAGGT+TGG 0.581334 7.1:-2099761 MS.gene026010:CDS
AGTAAATTACCTTGATTGCA+GGG 0.581647 7.1:+2100135 None:intergenic
CTAGTGCCAGCCTCACAAGC+AGG 0.582418 7.1:-2097224 MS.gene026010:CDS
GGATCCCATTGGAGTGCACA+AGG 0.586468 7.1:-2095267 MS.gene026010:CDS
TTGGACAAACAGCCCCATCA+TGG 0.587088 7.1:-2094898 MS.gene026010:CDS
GATGCTGTTATTGGAACAGC+CGG 0.587215 7.1:-2094390 MS.gene026010:CDS
AACCACCCTGTCATCTTGAA+GGG 0.588607 7.1:+2095301 None:intergenic
GTATCAGCTAAAGATGAGCC+TGG 0.589213 7.1:-2097353 MS.gene026010:CDS
TGCACCATAAACTGCACCAT+AGG 0.591283 7.1:+2093292 None:intergenic
GTTCTGATCAACCTCAGCCA+TGG 0.592521 7.1:+2099916 None:intergenic
TTGTATCCTTGGTCTGCAGG+AGG 0.600150 7.1:+2093377 None:intergenic
GGTGGACCCCATGATTGGTG+GGG 0.600476 7.1:+2095036 None:intergenic
AGCTATATCAGAAGAGCAAG+TGG 0.600575 7.1:-2094357 MS.gene026010:CDS
TGATGGGGCTGTTTGTCCAA+TGG 0.602005 7.1:+2094901 None:intergenic
GACCTCCACCAGCATTTGGT+GGG 0.602365 7.1:+2095004 None:intergenic
GGTGGGATAATTGGTCGGAA+AGG 0.602653 7.1:-2099740 MS.gene026010:CDS
GACAGAACTATGAGCAGGGT+AGG 0.604594 7.1:+2093352 None:intergenic
CAGTGGAAATTCCATGGCTG+AGG 0.606695 7.1:-2099927 MS.gene026010:CDS
CAATCATGGGGTCCACCTCA+GGG 0.610026 7.1:-2095030 MS.gene026010:CDS
GCTATATCAGAAGAGCAAGT+GGG 0.610415 7.1:-2094356 MS.gene026010:CDS
ACAACAGCAAATTGTTGAGA+CGG 0.611449 7.1:-2099876 MS.gene026010:CDS
AATAAGCCATCCACAGCAGG+TGG 0.611934 7.1:+2097320 None:intergenic
ACAAAATGAGTCTGAAAAGG+TGG 0.617900 7.1:-2099852 MS.gene026010:CDS
GGTCTCCCACCAAATGCTGG+TGG 0.624009 7.1:-2095009 MS.gene026010:CDS
TGCACCTTCCATGGTCACAC+AGG 0.626823 7.1:-2094815 MS.gene026010:intron
CAGGGTGGTTGAAGTAGTAG+GGG 0.627870 7.1:-2095288 MS.gene026010:CDS
TGAAGCATCTCTTCCATAGG+CGG 0.628282 7.1:+2094870 None:intergenic
ATTCTGAAAACACTCTCACC+AGG 0.628905 7.1:+2099785 None:intergenic
TGCCCTTCAAGATGACAGGG+TGG 0.630655 7.1:-2095303 MS.gene026010:CDS
GAAGTAGTAGGGGATCCCAT+TGG 0.631279 7.1:-2095278 MS.gene026010:CDS
AGTACCTGTGTGACCATGGA+AGG 0.631574 7.1:+2094811 None:intergenic
AGTTTAATTGGGAAACAAGG+AGG 0.632206 7.1:-2097200 MS.gene026010:CDS
GTTACCATACAAGAAACAAG+AGG 0.636417 7.1:-2094327 MS.gene026010:CDS
CTGGCATGTGCTCCACAGGG+TGG 0.637657 7.1:+2095070 None:intergenic
GGAAGTTTAATTGGGAAACA+AGG 0.639460 7.1:-2097203 MS.gene026010:CDS
AAGTGATGAAGGATAATAGG+TGG 0.639762 7.1:+2100281 None:intergenic
CTATATCAGAAGAGCAAGTG+GGG 0.641360 7.1:-2094355 MS.gene026010:CDS
GTTAGATGCTCCTTCAGGTG+TGG 0.645046 7.1:-2097270 MS.gene026010:CDS
GCAGGTGGAAGAGAAGAACC+AGG 0.646569 7.1:+2097335 None:intergenic
GAGGAGGCATTTCAGCTGGT+GGG 0.647020 7.1:+2094923 None:intergenic
CGGCGCAGCAACAAACAGGT+GGG 0.647966 7.1:-2093400 MS.gene026010:CDS
AGGTTGGTGGGATAATTGGT+CGG 0.649103 7.1:-2099745 MS.gene026010:CDS
CCACCACCCCACCAATCATG+GGG 0.649451 7.1:-2095042 MS.gene026010:CDS
TTTGGTGGGAGACCCTGAGG+TGG 0.656048 7.1:+2095018 None:intergenic
GGTGGGCCTCCTGCAGACCA+AGG 0.658048 7.1:-2093383 MS.gene026010:CDS
GCATTTGGTGGGAGACCCTG+AGG 0.663331 7.1:+2095015 None:intergenic
TGGGGCTGTTTGTCCAATGG+AGG 0.664238 7.1:+2094904 None:intergenic
CATAGACAGAACTATGAGCA+GGG 0.665116 7.1:+2093348 None:intergenic
GCATGTCCTGGATTGGAAGG+TGG 0.687180 7.1:+2093320 None:intergenic
TAGGCGGATATACCATGATG+GGG 0.688165 7.1:+2094886 None:intergenic
GCTGAGGTTGATCAGAACGT+AGG 0.692033 7.1:-2099911 MS.gene026010:CDS
TGAGTCTGAAAAGGTGGTTG+AGG 0.692336 7.1:-2099846 MS.gene026010:CDS
GCCCGTTCTGAAGTTCCGGG+AGG 0.698554 7.1:+2099659 None:intergenic
AGAAACAAGAGGAGTTCCTG+GGG 0.720239 7.1:-2094316 MS.gene026010:CDS
AATGGCTAATAACCACCCTG+TGG 0.739150 7.1:-2095082 MS.gene026010:CDS
GAGATGACAGTTGAAATCAG+CGG 0.760601 7.1:-2094294 MS.gene026010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr7.1 gene 2093274 2100309 2093274 ID=MS.gene026010
chr7.1 mRNA 2093274 2100309 2093274 ID=MS.gene026010.t1;Parent=MS.gene026010
chr7.1 exon 2100267 2100309 2100267 ID=MS.gene026010.t1.exon1;Parent=MS.gene026010.t1
chr7.1 CDS 2100267 2100309 2100267 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2100145 2100238 2100145 ID=MS.gene026010.t1.exon2;Parent=MS.gene026010.t1
chr7.1 CDS 2100145 2100238 2100145 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2099658 2099946 2099658 ID=MS.gene026010.t1.exon3;Parent=MS.gene026010.t1
chr7.1 CDS 2099658 2099946 2099658 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2097144 2097381 2097144 ID=MS.gene026010.t1.exon4;Parent=MS.gene026010.t1
chr7.1 CDS 2097144 2097381 2097144 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2095193 2095341 2095193 ID=MS.gene026010.t1.exon5;Parent=MS.gene026010.t1
chr7.1 CDS 2095193 2095341 2095193 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2094816 2095109 2094816 ID=MS.gene026010.t1.exon6;Parent=MS.gene026010.t1
chr7.1 CDS 2094816 2095109 2094816 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2094254 2094448 2094254 ID=MS.gene026010.t1.exon7;Parent=MS.gene026010.t1
chr7.1 CDS 2094254 2094448 2094254 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
chr7.1 exon 2093274 2093447 2093274 ID=MS.gene026010.t1.exon8;Parent=MS.gene026010.t1
chr7.1 CDS 2093274 2093447 2093274 ID=cds.MS.gene026010.t1;Parent=MS.gene026010.t1
Gene Sequence

>MS.gene026010

ATGCCACCACCTATTATCCTTCATCACTTCGTTCTCACAACTTGTAAGTCACTCCCTCCACTCTCACTTAGCCCCTTTTCCCAAAACCAATACCAAAACCCTAGATTCCATCTTCTTCATTCTCGCACCCAAACTTCTAATTTACATCTCTACCCTGCAATCAAGGTAATTTACTCACCATGTTCGTTTTTTCTATGCATTTATTGTACTCTACACTCACTTATTCACTATTTCTCGCGGTTCAGCAACTTTTTCTCGATAAATCCTTTACAGATCTATCCCCTATTCTCCTTTTAACTCTACTTCTACTTGTTGATATCATGTGGTGTAAAAATTTGATTTTTTTGTTTGTGTTTCTGGCAGTGGAAATTCCATGGCTGAGGTTGATCAGAACGTAGGTGAATTCGAAGAACAACAGCAAATTGTTGAGACGGAACAAAATGAGTCTGAAAAGGTGGTTGAGGTGCCGATCGTTGAGCCTGAGAAGAAATGGCCGGGCTGGCCTGGTGAGAGTGTTTTCAGAATGTTGGTTCCTGCTCAAAAGGTTGGTGGGATAATTGGTCGGAAAGGAGAGTTTATTAAGAAGATTGTTGAAGAGACACGTGCTCGTGTTAAGATTCTTGATGGGCCTCCCGGAACTTCAGAACGGGCTGTGAGTGTTTTCTCTATTCAGCTTACATCTGTTTTTCTGGTTAAAAAGTTAGCTGCATTTGTATCTTGGTAGCATTGATCTGGAATGATTTATTTTTACCAAGCTCTTTTGGATTTTCTTACTTCCTTCATTTTTTAAAAGGATTCATTTGTTTTTGAATATGGTTTTAAAATTTGTGGTTGAGTTGTAGAATAATATTCATGATATCTGTTTTTTTTTATGGAGCTCTGCAGTGATTGTACTCATTACTTGCAATGATGACATAGTTATATCTTTTATCTGTACTTTTACTAATCCTAGATAAGTACATTATAACAAATAAATAAACGAAAAATGTATGCACTGATGTGTGTCTGAGCGTCGCATTTTCTAAGACAAGGACCAATGTGAGAAATATTTACGTATGTAATTAGGTATTTACCTATATAATTTGGGTCCAAAATGCTTGTAAATATTCAGAGTAGGAATTATTGGGAGTGAGGGAAAGTACCTTTAATTCTTTTCAAGGACCTGGAATTTGTGTCTGAAACAACTCATAGCAATTATCCATTTAACTATGTCTCTCTCTGCTTAAGATGTTATGATGAAGAATAAATTGTGGCTGTCTTTCCTTAAGCAATCTTAATTTGCAATGTCCTATTCTCACGACAAGAAATTGTAAGAATAAAAAATATAGCTTGTTTATGGTCAGAACAAAGTGAAACCTTATTCATGTGATACAATGAACACAAAAACTAAGATGAAGAAGACGAAACAAATTCGAAAAAGAATTATGGAAAAAATCCACGAAATATGAATTTAATTCTAACAGAAAATGAATCTGTGCAGGTTCAATATTCCATTTTTAAAGGCAACGACTCAATCATCAATTAGATCCCCAATATTGAAGAACCAAAGTTCCAGATGCAGGATCAGCATTGAGCATTGCAAAGTGCTGAAAGTTTATTAACACGTAGTCATTTTATATCAAAGTACCACGAAGCTCTGCATTCCAGCGGGTAAATTCAAAACCTGGATGATTGATGTCTTGCCGCAGATTCCTAGCAATGAAAAAAAGTTTATCACCAGCTCTAATACAATACCGAAAACAATAAATACCAAACCATAAGTATTTTGTTTGTCATACATGTTATCAAGAAAAAAGGATCCGAAGATTAACCAAGGCTATCAATTAATTTTAATTTTAACACATGGAGTATGTCTATGTTAATATTTGTTATGTTATCACAATAGTTCTTCAGTAGGAAATATTGGTAAAGTTATAGCTATAATTAACTAAATGCACTGTAGTAAACCAAGACCCAATCAATAAAAAAAAAATAGAAGACACTTCCACGGTGACATACATTTTAAATCACACGTCATATCACTTATCGTAATTATGTTCACGTATGACACACTTCCATGTTTCTAAAAGGTTTATCTAGGAAATTCCTTTCACGTTTTAATCGCCATTGGATATGAGTAGTAAAGAATGTTTCTTGTGGTAGTTGGAACTTGGTGATATTAAATATACTGGCAAAGGGTTGGGACAAAATGTTGCTTGTTTTCTTCCCTAACAAGAAACAGGTAGAGGGCTGGGGTAAGTTGCACGAGGTGCAGAAGTATTGCATAGATTGGCAGTGGACATAGAAAGGAAAACTGGTAGGGAGCGGGTGGGCGTTCTAGTTAGACAACGAGTTCAGGCACACAATCTTCAAAATTATATTTTAGAATTCTCCATGTTTTTTTTTCTTTTTCTGTTGTCGATAAAAGATGTTTATCAAAATATCTAAACTGTGCTTCAGTTATCTATCTGAAAACCAACATGCTGTTATATTTGGTACTTGACCACAAGCAGTTTGACATTTTAATTTTCAAAGATTGCAATTGGACGAGGATAGGTTAAATAGTAATGTAGAGTATTTGGGTGCAAGAGCTATTCCTCTTAATAATTCGGCCTTTAAGACTGTTACAAAATTGGTTTGGTGGTGAAGTGAAGGATTCCTTCTGGAATTTTTCTGACAGGTCATGATAATGTAGGTATTAATTGTGGAAGAATATTGGCTATTTAGCTGAATCTCCTATTTGTTGCATTTTTAATAATCAAAGTTGCTTGCATTGCATGCTATCTTGCTGATCCCGAGATTGTAGGTGGCATGTAAAGGGCTGTAATTGGTGCTCTGGTGGCTTTTTATTGTTTGTCACCATATTATGTCTTCGTGTTGCATATTATCATTAGAGGAAATGTTGAGATCAAAGACAGGCTGATAGTGTTATTTGTTCTTTGTGATTAGGTAATGGTATCAGCTAAAGATGAGCCTGGTTCTTCTCTTCCACCTGCTGTGGATGGCTTATTGAAGGCTCATAAACGGTTAATTGATGGGTTAGATGCTCCTTCAGGTGTGGCTGGGAAGGTTTCTACAAAATTTCTAGTGCCAGCCTCACAAGCAGGAAGTTTAATTGGGAAACAAGGAGGCACCGTAAAATCTATCCAAGAAGCATCAAATTGTATAGTCAGAGTTCTGGGAGCAGGTATCTACTCATATTTGATTTAAAAACTTTCAATCTGATTGCTGGATTGTCAATTTTATTATCACTTAGCATTCTGTTATTCTGAGAAGTTCATCGTAGCTTGTATTACAAATTTTCCTTACCCTAATTTTATATCAGAGATAAGTTTGGGATTCATCCACTGGGTACTAGAGCTGTAATAGAGCAATAGTGTAAATATGCTTTTAAGTCTATTAACTGGGATGGTTCCAAGTTCCTCTTCCTATTCGTCAAACGTGTTTTGTTCTTGTCACTGTTTGGTTTATTACCATTTTTACTATTATTGATACTCCTCTCTTTAATTGTCGCTTTTGTAGAAGAATTTTGTTCCTAGAGGTTAATGAGTTTGATCCATATATGGTTTCGGATAGAACATTATGGCGTAATTTTATCCCTGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTACCAAGGTTGTTAAACGCGCGCTGTAGATCGTGAGATCGTACGATCTCACGCGTTCTTCTCCCTAAACCGTGCCGGCGCGGTGCGAAAATCGTTGAAGAGGGAGGCGCGGCCGGCGCAGAGGTAGATCGCAAGATCGTGGAAGCGGCGAGTTTTCTCACACCGAATTTGTACCTTTTAACCCATATGACCCTGGTTCGCGGAGAAGAGTTCGTTGACCAAAACGACATGCTTTGCAGCGGAAGAGAAATGGATGTTGAAGAGTCAAAACAGTTGAGCTTGCCTTTCACGCAGTCAATATTAAAAGCTGATTTATTATTTTTGGAAAGTGTGCCGCTATTTGCTTGTTATTCTTAATTTTATTTTATAATGCTTCTTTTACGGGAATTTTTATTTTTTAATGCTAATTTGCCAAGTTTACTTTTTTTAATGCTAGTAATTTGCTAAGTTTACTCTATTTTTAAAAAGATTTCATTGTTTTTAGCCTTAATAAATCTTATATTTAATATATTATTTCATATATTTTAAAAGCTTTATGCTAACAAATACTTAGATAGTTTTTTTTCTAATAAAAATTAATTAAATTGTTAATTAGTTATTTATTTAACATAAGTACTATTTAATTTAATCATATAATTTAATTATATAACACTATATGTAGTATTTTTTTTGTTTGAAGAAACATTCTATACTTAGTAATATTAAGTGTGTTTCTTAATTATAGTATAATCTTGTCTTTGGTGGGATCTTACGATCCTTGTTACGATCTCACGATTTACGATTTTTCTATACCCAAACGATCTTAGATGAGATCTCGATTTTGACAACCATGGTTGTTACTGTGATTGTTTTCAAAGCTCAATGAATGAGATAATAAATAATCAAGAATATTAAGGAATAAGACATGATTTCATAAAAAATAATAAAATTTATTGATTGTATTAATATGTGTAAATACCCTTAAAACAACAAGTTAAAAGAAACGGAGGGAGTATCATGTAAGCACTCAGATATGCATAGCTAACTTCTATCATTACCACCTAAACCCTAAACTTACGATAATTCCCGCTATTTATTAATTCAGTTGTCAGATTCATGTATTCTAATCTAAGTAGTTTAAAACTTTCCCTTTCTAAAACCTTTTTTTGTCTATCCTTTTCATTAAAAATTATTTCTAAGATACAATTTGAAGTTTATGCTTCCAGTCTTCTGTAGTTTATGCTTTTAGATAAAATATTAGTGGAAATTTGAAGTTTTTTTCTCTTTCCGTTTTGGTTCTTGGATGGGCTGTTTGACATTCTCTAGTTGCTAAGCATCTTGCACCTCTGTTGTTTTTTTGTCTGCAGAAGATCTGCCTGTTTTTGCCCTTCAAGATGACAGGGTGGTTGAAGTAGTAGGGGATCCCATTGGAGTGCACAAGGCAGTGGAGATGATTGCATGCCACCTTAAGAAATTTTTAGTTGATCGCAGTATAATTCCAATTTTTGAAATGAATGTAAGTGTGTTAATTCATATTACACTTGTGAAGAATCTATCTTATGCTTACCAAGGAATGCAACTAATTTGATCTTTCTCCAGATGCAAATGGCTAATAACCACCCTGTGGAGCACATGCCAGTGCCACCACCACCCCACCAATCATGGGGTCCACCTCAGGGTCTCCCACCAAATGCTGGTGGAGGTCCTGGATTTGGACTTGCTCCTCAATTCATGCCACCTCCAAGGCAAGTTGATAATTACTACCCACCAGCTGAAATGCCTCCTCCATTGGACAAACAGCCCCATCATGGTATATCCGCCTATGGAAGAGATGCTTCAATAGGAGTTCACGCATCATCCAATACTCAGTCTGCACCTTCCATGGTCACACAGGTACTTTTCTTATTTCAAATTTTGTTTTCTAATAATCCCCAAAAGGAAGTAGTATGGTGATTGGGATGATATATTGGCATTACATTTTTATGTAGTTTGCATTTTTCTGGATGTCTTAGAACTCGCCAGTCTGTCTGTCGTTGTTTATGTAGTTTGATGAGACGACTTGTTGACTGCTGCTTCATGAATTTTGTGCAATAGCCGTGGTAAAGGCTGGTTGTGAAACTTTACCAGTGTTGATTGATATTTGCTGTTGCTTTCCACGTTGCTGTTTAGATTTAAGATAGCAGAGGGTGATGTTAGGTTCCACACTTGGATGTTAAGCTGAAATGATACTAATTGTCTTGCTAATGCTATTGTGGCACAGATCACGCAGCAAATGCAAATTCCTCTATCGTACGCTGATGCTGTTATTGGAACAGCCGGAACAAATATAAGCTATATCAGAAGAGCAAGTGGGGCCACTGTTACCATACAAGAAACAAGAGGAGTTCCTGGGGAGATGACAGTTGAAATCAGCGGGACTGCTTCTCAAGTTCAAACAGCACAGCAATTGATACAGGTAATCCTGATCTTGGTCTTTGATTTGCTCCAGCCGTTCTAATATTAGTGTTGTCCTAGGTTTTCTTCAGACTAGGAAAAACTATAAATGAATAAAATAATATTGTAATTTTACAAACTTTTACTCTTTTTTTTTTTTTGAAGAAGCTAAATTAGCCCACCCTAATTGGCAAACTTTTCCTCATTAACAGTTGGTTATTAACCATTGTTATACTTGGAGGTAGAATTGGAATGAAATAATTAATGCCACTATTAAAAAACATAACAGTTATTTTAAGACATTTTTATATGTTGAAGCTGCATGCATTTTAGTTTATACATTACAGTTCATAGCATGCGGCATGTCTTGGAAATTTGTTTTAGATTTATACTGAATTAGAGTAATGAAAAAATATTGAATCGTTTACTTGGTTCCTAAAAGATTCATTTTGCGCTAGAGTTTTATCGAAGATTAATTTTTTATGTAAATACAGAGAGTAAATTATAAGATTGTTAAATTTCTAAATTAAACTATTATCCTTCCACGGGTATTTTTTCAATAAGTTGACTGGTTGAGTAAGAAATTTGTCATTTTATCCATCCTCACCCCGTCATTTATTTGATGCAAGGAAATTATCTTCAATCTTTTCTGTTATTTCATTTCATGCAGTATCTTTATTTTCTCAATTTGTTTCCATATAAAAGCTATGAATTTACTGTGCATAGTCCTATCTCACCGAATGCATGTCTTGGATGTTAGAACTGATTGACCTAACATTATCAATTTGCCTTGTACTCCAGCAATATAATCCTGAATCTGTGGTGCAGAATTTTATGGCGGAAGCTGCAGCACCGGCGCAGCAACAAACAGGTGGGCCTCCTGCAGACCAAGGATACAATTCCTACCCTGCTCATAGTTCTGTCTATGCGTCACCACCTTCCAATCCAGGACATGCTGGAGCCTATGGTGCAGTTTATGGTGCAAATTATGGGTACCAATGA
Protein sequence

>MS.gene026010.t1

MPPPIILHHFVLTTSPFPKTNTKTLDSIFFILAPKLLIYISTLQSSGNSMAEVDQNVGEFEEQQQIVETEQNESEKVVEVPIVEPEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSGVAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIACHLKKFLVDRSIIPIFEMNMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPPRQVDNYYPPAEMPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPAQQQTGGPPADQGYNSYPAHSSVYASPPSNPGHAGAYGAVYGANYGYQ