Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026519.t1 | KEH40633.1 | 98.9 | 615 | 6 | 1 | 1 | 614 | 1 | 615 | 0.00E+00 | 1190.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026519.t1 | Q8LF21 | 84.9 | 615 | 91 | 2 | 1 | 614 | 1 | 614 | 2.9e-305 | 1048.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026519.t1 | A0A072VGR4 | 98.9 | 615 | 6 | 1 | 1 | 614 | 1 | 615 | 0.0e+00 | 1190.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene035805 | MS.gene026519 | PPI |
MS.gene026519 | MS.gene73119 | PPI |
MS.gene026519 | MS.gene064542 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026519.t1 | MTR_1g032550 | 99.024 | 615 | 5 | 1 | 1 | 614 | 1 | 615 | 0.0 | 1254 |
MS.gene026519.t1 | MTR_8g105580 | 89.465 | 617 | 61 | 3 | 1 | 614 | 1 | 616 | 0.0 | 1150 |
MS.gene026519.t1 | MTR_8g105580 | 89.583 | 576 | 56 | 3 | 1 | 573 | 1 | 575 | 0.0 | 1075 |
MS.gene026519.t1 | MTR_8g009510 | 74.331 | 635 | 141 | 5 | 1 | 613 | 1 | 635 | 0.0 | 966 |
MS.gene026519.t1 | MTR_7g451010 | 75.606 | 619 | 141 | 3 | 1 | 613 | 1 | 615 | 0.0 | 961 |
MS.gene026519.t1 | MTR_4g098920 | 69.821 | 613 | 174 | 4 | 4 | 613 | 1 | 605 | 0.0 | 914 |
MS.gene026519.t1 | MTR_8g099550 | 67.537 | 613 | 191 | 4 | 4 | 613 | 1 | 608 | 0.0 | 891 |
MS.gene026519.t1 | MTR_8g027675 | 67.863 | 613 | 188 | 3 | 4 | 613 | 1 | 607 | 0.0 | 888 |
MS.gene026519.t1 | MTR_5g009150 | 67.101 | 614 | 193 | 4 | 4 | 613 | 1 | 609 | 0.0 | 886 |
MS.gene026519.t1 | MTR_8g009510 | 74.194 | 527 | 120 | 3 | 103 | 613 | 2 | 528 | 0.0 | 805 |
MS.gene026519.t1 | MTR_2g009690 | 37.120 | 493 | 290 | 6 | 5 | 487 | 22 | 504 | 1.60e-93 | 306 |
MS.gene026519.t1 | MTR_4g093750 | 37.120 | 493 | 290 | 6 | 5 | 487 | 13 | 495 | 1.89e-90 | 295 |
MS.gene026519.t1 | MTR_4g093750 | 37.045 | 494 | 291 | 6 | 5 | 487 | 13 | 497 | 2.09e-89 | 293 |
MS.gene026519.t1 | MTR_4g030140 | 32.617 | 512 | 311 | 9 | 1 | 492 | 1 | 498 | 1.03e-69 | 243 |
MS.gene026519.t1 | MTR_4g134680 | 30.920 | 511 | 324 | 9 | 1 | 495 | 1 | 498 | 8.36e-68 | 235 |
MS.gene026519.t1 | MTR_4g134680 | 31.102 | 508 | 321 | 9 | 1 | 492 | 1 | 495 | 2.28e-67 | 235 |
MS.gene026519.t1 | MTR_4g134680 | 31.102 | 508 | 321 | 9 | 1 | 492 | 1 | 495 | 9.57e-67 | 234 |
MS.gene026519.t1 | MTR_4g134680 | 40.404 | 198 | 118 | 0 | 295 | 492 | 1 | 198 | 7.64e-42 | 160 |
MS.gene026519.t1 | MTR_8g087770 | 35.816 | 282 | 162 | 6 | 35 | 310 | 68 | 336 | 1.42e-34 | 139 |
MS.gene026519.t1 | MTR_8g087750 | 35.034 | 294 | 168 | 8 | 35 | 320 | 71 | 349 | 1.66e-33 | 136 |
MS.gene026519.t1 | MTR_8g463270 | 26.136 | 352 | 228 | 9 | 12 | 341 | 31 | 372 | 1.01e-17 | 87.8 |
MS.gene026519.t1 | MTR_4g022340 | 26.207 | 290 | 159 | 9 | 38 | 302 | 32 | 291 | 1.74e-13 | 72.0 |
MS.gene026519.t1 | MTR_4g094300 | 27.273 | 187 | 127 | 4 | 36 | 214 | 41 | 226 | 3.43e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026519.t1 | AT1G14830 | 84.878 | 615 | 91 | 2 | 1 | 614 | 1 | 614 | 0.0 | 1101 |
MS.gene026519.t1 | AT3G60190 | 76.045 | 622 | 140 | 3 | 1 | 613 | 1 | 622 | 0.0 | 1008 |
MS.gene026519.t1 | AT2G44590 | 73.127 | 614 | 157 | 3 | 4 | 613 | 1 | 610 | 0.0 | 954 |
MS.gene026519.t1 | AT2G44590 | 70.358 | 614 | 157 | 4 | 4 | 613 | 1 | 593 | 0.0 | 910 |
MS.gene026519.t1 | AT2G44590 | 70.244 | 615 | 157 | 5 | 4 | 613 | 1 | 594 | 0.0 | 907 |
MS.gene026519.t1 | AT3G61760 | 68.241 | 614 | 185 | 6 | 4 | 613 | 1 | 608 | 0.0 | 894 |
MS.gene026519.t1 | AT5G42080 | 66.938 | 614 | 193 | 5 | 4 | 613 | 1 | 608 | 0.0 | 874 |
MS.gene026519.t1 | AT5G42080 | 66.938 | 614 | 193 | 5 | 4 | 613 | 1 | 608 | 0.0 | 874 |
MS.gene026519.t1 | AT5G42080 | 66.287 | 614 | 191 | 6 | 4 | 613 | 1 | 602 | 0.0 | 858 |
MS.gene026519.t1 | AT3G61760 | 69.338 | 574 | 166 | 6 | 4 | 573 | 1 | 568 | 0.0 | 845 |
MS.gene026519.t1 | AT3G61760 | 72.748 | 444 | 118 | 3 | 4 | 444 | 1 | 444 | 0.0 | 700 |
MS.gene026519.t1 | AT5G42080 | 73.660 | 429 | 110 | 2 | 4 | 429 | 1 | 429 | 0.0 | 678 |
MS.gene026519.t1 | AT2G14120 | 38.277 | 499 | 282 | 9 | 5 | 487 | 19 | 507 | 9.72e-95 | 307 |
MS.gene026519.t1 | AT2G14120 | 38.277 | 499 | 282 | 9 | 5 | 487 | 19 | 507 | 1.85e-94 | 307 |
MS.gene026519.t1 | AT2G14120 | 38.277 | 499 | 282 | 9 | 5 | 487 | 19 | 507 | 2.03e-94 | 307 |
MS.gene026519.t1 | AT2G14120 | 36.364 | 528 | 281 | 10 | 5 | 487 | 19 | 536 | 3.79e-90 | 296 |
MS.gene026519.t1 | AT4G33650 | 37.022 | 497 | 290 | 8 | 5 | 487 | 35 | 522 | 2.32e-89 | 294 |
MS.gene026519.t1 | AT4G33650 | 37.022 | 497 | 290 | 8 | 5 | 487 | 35 | 522 | 2.36e-89 | 294 |
MS.gene026519.t1 | AT1G10290 | 31.115 | 511 | 317 | 10 | 1 | 492 | 1 | 495 | 6.52e-66 | 232 |
MS.gene026519.t1 | AT1G59610 | 32.553 | 470 | 287 | 10 | 38 | 492 | 41 | 495 | 9.65e-65 | 229 |
MS.gene026519.t1 | AT1G60500 | 25.202 | 619 | 402 | 18 | 35 | 611 | 65 | 664 | 1.17e-40 | 157 |
MS.gene026519.t1 | AT1G60530 | 42.703 | 185 | 105 | 1 | 35 | 219 | 62 | 245 | 1.22e-39 | 147 |
MS.gene026519.t1 | AT1G53140 | 26.136 | 352 | 220 | 11 | 12 | 334 | 47 | 387 | 4.11e-18 | 89.0 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCATTCGACAAAGTATTTA+AGG | 0.164383 | 1.1:+17492422 | MS.gene026519:CDS |
TGGACATCTGGCACATAAAA+TGG | 0.185730 | 1.1:+17492012 | MS.gene026519:CDS |
AGAAAGAGATACACTGATTT+TGG | 0.206059 | 1.1:+17488851 | MS.gene026519:CDS |
CCAGGTGGGGACAAAATTTA+TGG | 0.231988 | 1.1:+17492655 | MS.gene026519:CDS |
AGAGATTACAATTAGCTAAA+AGG | 0.247163 | 1.1:+17494427 | MS.gene026519:CDS |
GTTGACAAAACTTGATCTTA+TGG | 0.256758 | 1.1:+17491740 | MS.gene026519:CDS |
GAGTATTCCGATTTGGGTTC+TGG | 0.260981 | 1.1:-17493544 | None:intergenic |
AGGCCTATAGCTGTGGATTC+AGG | 0.281307 | 1.1:+17492276 | MS.gene026519:CDS |
GATAATCACCTCAGGAAAAT+TGG | 0.281779 | 1.1:+17493593 | MS.gene026519:CDS |
GATGAAACAGATCGTATAAC+TGG | 0.286363 | 1.1:+17489837 | MS.gene026519:CDS |
AAATCAGTGTATCTCTTTCT+AGG | 0.291241 | 1.1:-17488848 | None:intergenic |
GCAGCCTAACTGCATTATAT+TGG | 0.297324 | 1.1:+17491473 | MS.gene026519:intron |
CAACGTGCATGCACTGTCTT+AGG | 0.299919 | 1.1:+17486933 | MS.gene026519:CDS |
GATTAGGAGTATTCCGATTT+GGG | 0.316614 | 1.1:-17493550 | None:intergenic |
GGATTAGGAGTATTCCGATT+TGG | 0.322268 | 1.1:-17493551 | None:intergenic |
ATGTGCCAGATGTCCATATT+CGG | 0.323738 | 1.1:-17492005 | None:intergenic |
TTTGAGACGAGCCCCGAATA+TGG | 0.325981 | 1.1:+17491992 | MS.gene026519:CDS |
GAAAATGAATACCAGAGTTC+AGG | 0.326748 | 1.1:+17487123 | MS.gene026519:intron |
CATGATTATTGCTCGCAAAA+AGG | 0.327150 | 1.1:+17491958 | MS.gene026519:CDS |
CACAGCTGCAAACGATTCTT+TGG | 0.329985 | 1.1:+17493409 | MS.gene026519:CDS |
TGTGCCAGATGTCCATATTC+GGG | 0.340480 | 1.1:-17492004 | None:intergenic |
AAACTTGATCTTATGGATAA+AGG | 0.363059 | 1.1:+17491747 | MS.gene026519:CDS |
AGTCACCCGGCTAGTTGATA+TGG | 0.364744 | 1.1:+17493460 | MS.gene026519:CDS |
TCTCTAAAATAGTGTATAGT+TGG | 0.368054 | 1.1:-17492392 | None:intergenic |
GAGGTGAGGGTTTGTCACTC+TGG | 0.370189 | 1.1:+17486964 | MS.gene026519:CDS |
GTTTCAGGTGAAAGAACATT+TGG | 0.372975 | 1.1:+17491714 | MS.gene026519:intron |
GGATGAAGATCCTGCACTTA+TGG | 0.374820 | 1.1:+17494401 | MS.gene026519:CDS |
ATCTGTGTAGTTGTCCAGAT+TGG | 0.382369 | 1.1:-17493573 | None:intergenic |
CATCTGAAGTGGCAATATCT+TGG | 0.392120 | 1.1:-17491512 | None:intergenic |
GGCCTATAGCTGTGGATTCA+GGG | 0.395254 | 1.1:+17492277 | MS.gene026519:CDS |
TTAACCCTCATAGATCTTCC+TGG | 0.397388 | 1.1:+17490877 | MS.gene026519:CDS |
TTCCGATTTGGGTTCTGGTT+CGG | 0.403422 | 1.1:-17493539 | None:intergenic |
TGACAATGAACCACAGCCTT+TGG | 0.407001 | 1.1:-17494067 | None:intergenic |
GAATGTATGCTGAGTTGAAT+TGG | 0.412745 | 1.1:-17489885 | None:intergenic |
AAATACCTCCGATAGAAGTT+TGG | 0.413155 | 1.1:-17492050 | None:intergenic |
CATCTGCTTTCAGGTCCACC+TGG | 0.416349 | 1.1:+17493135 | MS.gene026519:intron |
TTTATTAAGGCAATGATACT+AGG | 0.420159 | 1.1:-17492210 | None:intergenic |
AGCATCTGGAGGTTGTCATT+AGG | 0.420388 | 1.1:+17492178 | MS.gene026519:intron |
GTGGCAATATCTTGGTTTGC+AGG | 0.420803 | 1.1:-17491504 | None:intergenic |
TGTCGCCGTCGTTGGTGGAC+AGG | 0.426923 | 1.1:+17487001 | MS.gene026519:CDS |
CTTCCTTCTGTCGCCGTCGT+TGG | 0.429017 | 1.1:+17486993 | MS.gene026519:CDS |
TAGTTGTCCAGATTGGGATT+AGG | 0.431278 | 1.1:-17493566 | None:intergenic |
CAGCTTCTGTAACGACTCTC+TGG | 0.443269 | 1.1:-17492750 | None:intergenic |
TCTGTGTAGTTGTCCAGATT+GGG | 0.445605 | 1.1:-17493572 | None:intergenic |
CCTTCTGTCGCCGTCGTTGG+TGG | 0.445978 | 1.1:+17486996 | MS.gene026519:CDS |
TTGTGTAGTTGCAACACTAA+TGG | 0.446729 | 1.1:-17488785 | None:intergenic |
ACCCCTGAATCCACAGCTAT+AGG | 0.458697 | 1.1:-17492279 | None:intergenic |
CAGAGTTGGACCGCATTGGC+AGG | 0.459908 | 1.1:+17492256 | MS.gene026519:CDS |
TCAGTGTTAGAGAGTGTTGT+TGG | 0.460422 | 1.1:+17487153 | MS.gene026519:CDS |
CAAAGAATCGTTTGCAGCTG+TGG | 0.470291 | 1.1:-17493408 | None:intergenic |
ATGGAAAGGTGCCGATCAAA+GGG | 0.470718 | 1.1:-17492718 | None:intergenic |
TGCAAAAGAAGTTGATCCCT+CGG | 0.471395 | 1.1:+17491545 | MS.gene026519:CDS |
TGTCCCATGCAGCTGCTGTA+AGG | 0.471759 | 1.1:+17489802 | MS.gene026519:intron |
GCATCCACAGAGGCATCAGC+TGG | 0.472043 | 1.1:-17492853 | None:intergenic |
ATGGCATGCAGGAATTGAAA+AGG | 0.472466 | 1.1:+17493360 | MS.gene026519:intron |
AGGTGAGGGTTTGTCACTCT+GGG | 0.472627 | 1.1:+17486965 | MS.gene026519:CDS |
AACCGAACCAGAACCCAAAT+CGG | 0.474926 | 1.1:+17493537 | MS.gene026519:CDS |
GAATACTCCTAATCCCAATC+TGG | 0.476757 | 1.1:+17493559 | MS.gene026519:CDS |
CTCTGCATTAAGCTCGTCAA+TGG | 0.479963 | 1.1:-17492238 | None:intergenic |
GTTAGAGAGTGTTGTTGGAA+GGG | 0.480067 | 1.1:+17487158 | MS.gene026519:CDS |
CCATGCAGCTGCTGTAAGGC+AGG | 0.480175 | 1.1:+17489806 | MS.gene026519:intron |
TTGAATTGTACAAGCAAGCT+AGG | 0.482042 | 1.1:+17494451 | MS.gene026519:CDS |
AGTCTTCTGTACCCTTGCTC+TGG | 0.492384 | 1.1:-17492799 | None:intergenic |
TATGGAAAGGTGCCGATCAA+AGG | 0.495748 | 1.1:-17492719 | None:intergenic |
GGACATCTGGCACATAAAAT+GGG | 0.497173 | 1.1:+17492013 | MS.gene026519:CDS |
GAGCCCCGAATATGGACATC+TGG | 0.497527 | 1.1:+17492000 | MS.gene026519:CDS |
AAAATGAATACCAGAGTTCA+GGG | 0.498338 | 1.1:+17487124 | MS.gene026519:intron |
CTCAGCATACATTCTCCAAA+TGG | 0.498414 | 1.1:+17489894 | MS.gene026519:CDS |
ACGACATTGATTCAGTGGCT+TGG | 0.499384 | 1.1:+17494475 | MS.gene026519:CDS |
ATTACAGGCTGCAGCATCCA+TGG | 0.499397 | 1.1:+17491888 | MS.gene026519:CDS |
CAACTACACAAGACAGATGA+TGG | 0.499479 | 1.1:+17488797 | MS.gene026519:CDS |
CTCTAAAATAGTGTATAGTT+GGG | 0.504335 | 1.1:-17492391 | None:intergenic |
TGCACTGTCTTAGGTGATCA+TGG | 0.507165 | 1.1:+17486942 | MS.gene026519:CDS |
AATTGGAATTTCAGACGTCC+AGG | 0.509545 | 1.1:+17492637 | MS.gene026519:intron |
CTGTCTTCCTACTTTCATCT+CGG | 0.512216 | 1.1:-17493439 | None:intergenic |
GTCACAGATCATGTTGATAT+AGG | 0.512282 | 1.1:-17494026 | None:intergenic |
ATCTTGGTTTGCAGGAGAGA+TGG | 0.513495 | 1.1:-17491496 | None:intergenic |
TGTTAGAGAGTGTTGTTGGA+AGG | 0.515328 | 1.1:+17487157 | MS.gene026519:CDS |
TCAATCCAGGAAGATCTATG+AGG | 0.519110 | 1.1:-17490882 | None:intergenic |
ATGGCCAATATAATGCAGTT+AGG | 0.526957 | 1.1:-17491477 | None:intergenic |
TTGCTCTGGAGCAATCAGAT+GGG | 0.530480 | 1.1:-17492785 | None:intergenic |
TTAGGTGATCATGGAGGTGA+GGG | 0.530590 | 1.1:+17486951 | MS.gene026519:CDS |
GCGACTATGACGAGTTTGAT+CGG | 0.534919 | 1.1:+17486894 | MS.gene026519:CDS |
CTTGCTCTGGAGCAATCAGA+TGG | 0.535297 | 1.1:-17492786 | None:intergenic |
TGTTCAAGTTGGGAGAAAAG+AGG | 0.536836 | 1.1:+17494129 | MS.gene026519:CDS |
TGACGAGCTTAATGCAGAGT+TGG | 0.536861 | 1.1:+17492242 | MS.gene026519:CDS |
AATGCAGAGTTGGACCGCAT+TGG | 0.539255 | 1.1:+17492252 | MS.gene026519:CDS |
ATATCTTGCCAAACTTCTAT+CGG | 0.541795 | 1.1:+17492042 | MS.gene026519:CDS |
TTTGAGAAATTATACATCAA+CGG | 0.547445 | 1.1:-17491778 | None:intergenic |
GCACGAGTTCCTTTAAAACC+AGG | 0.547539 | 1.1:-17493153 | None:intergenic |
TAGACTCCATATCAACTAGC+CGG | 0.548087 | 1.1:-17493466 | None:intergenic |
TGTTCAAGATATTGAAAACA+TGG | 0.550683 | 1.1:+17491046 | MS.gene026519:CDS |
AGGCTGCAGCATCCATGGGT+TGG | 0.551004 | 1.1:+17491893 | MS.gene026519:CDS |
CTTAGGTGATCATGGAGGTG+AGG | 0.555541 | 1.1:+17486950 | MS.gene026519:CDS |
AAATTCTATACCAAAGGCTG+TGG | 0.556115 | 1.1:+17494057 | MS.gene026519:CDS |
ACACAAGACAGATGATGGAC+AGG | 0.556728 | 1.1:+17488802 | MS.gene026519:CDS |
ACAGCAACCTTTGTCAATCC+AGG | 0.557663 | 1.1:-17490895 | None:intergenic |
CATCTGATTGCTCCAGAGCA+AGG | 0.558965 | 1.1:+17492787 | MS.gene026519:CDS |
GCAAAAGAAGTTGATCCCTC+GGG | 0.563439 | 1.1:+17491546 | MS.gene026519:CDS |
TGCTCTGGAGCAATCAGATG+GGG | 0.565244 | 1.1:-17492784 | None:intergenic |
TTTAAAGGAACTCGTGCGGA+AGG | 0.566532 | 1.1:+17493159 | MS.gene026519:CDS |
TATTAATATCAGCTTGTGAA+CGG | 0.567091 | 1.1:-17491925 | None:intergenic |
GGGTACAGAAGACTTATTGA+AGG | 0.567761 | 1.1:+17492808 | MS.gene026519:CDS |
CGGTTAACAATTCCAACCCA+TGG | 0.570482 | 1.1:-17491905 | None:intergenic |
AAAGATTCCGAGATGAAAGT+AGG | 0.576433 | 1.1:+17493432 | MS.gene026519:CDS |
GAATGCAGAAAGAGCAACTC+GGG | 0.576605 | 1.1:+17494370 | MS.gene026519:intron |
GCCTATAGCTGTGGATTCAG+GGG | 0.577007 | 1.1:+17492278 | MS.gene026519:CDS |
CATCCACAGAGGCATCAGCT+GGG | 0.579787 | 1.1:-17492852 | None:intergenic |
CCACCAACGACGGCGACAGA+AGG | 0.582012 | 1.1:-17486996 | None:intergenic |
TTTATCACTTCAGCATCTGG+AGG | 0.582532 | 1.1:+17492167 | MS.gene026519:intron |
GGATGTTTAAGCTATTTCAA+AGG | 0.586530 | 1.1:+17492829 | MS.gene026519:CDS |
ATCTGATTGCTCCAGAGCAA+GGG | 0.590187 | 1.1:+17492788 | MS.gene026519:CDS |
CATTGGCAGGCCTATAGCTG+TGG | 0.593153 | 1.1:+17492269 | MS.gene026519:CDS |
AGACTCCATATCAACTAGCC+GGG | 0.593444 | 1.1:-17493465 | None:intergenic |
GAATTTCAGACGTCCAGGTG+GGG | 0.596068 | 1.1:+17492642 | MS.gene026519:intron |
TGGAGGTTGTCATTAGGCAA+CGG | 0.597344 | 1.1:+17492184 | MS.gene026519:CDS |
TGAGGGTTTGTCACTCTGGG+AGG | 0.600220 | 1.1:+17486968 | MS.gene026519:CDS |
TTTAAGGAACACATCGATGG+AGG | 0.601915 | 1.1:+17492438 | MS.gene026519:CDS |
AGAGCAACTCGGGAACATGT+TGG | 0.605190 | 1.1:+17494380 | MS.gene026519:CDS |
TTACCTTCTCAATGTATGAA+CGG | 0.605457 | 1.1:-17491070 | None:intergenic |
ACTACACAGATAATCACCTC+AGG | 0.605675 | 1.1:+17493585 | MS.gene026519:CDS |
CAATCCAGGAAGATCTATGA+GGG | 0.606676 | 1.1:-17490881 | None:intergenic |
AGATCTTCCTGGATTGACAA+AGG | 0.607657 | 1.1:+17490888 | MS.gene026519:CDS |
TAGGGACGACATTGATTCAG+TGG | 0.608583 | 1.1:+17494470 | MS.gene026519:CDS |
TTACAGGCTGCAGCATCCAT+GGG | 0.610950 | 1.1:+17491889 | MS.gene026519:CDS |
GGAATTTCAGACGTCCAGGT+GGG | 0.611153 | 1.1:+17492641 | MS.gene026519:intron |
GGATTGACAAAGGTTGCTGT+AGG | 0.613001 | 1.1:+17490898 | MS.gene026519:CDS |
AGGCCCAGCTGATGCCTCTG+TGG | 0.617848 | 1.1:+17492849 | MS.gene026519:CDS |
CAGCTATAGGCCTGCCAATG+CGG | 0.619117 | 1.1:-17492266 | None:intergenic |
TCTAGGTGCATGAAGAAACT+CGG | 0.623647 | 1.1:-17488831 | None:intergenic |
TGAATTGTACAAGCAAGCTA+GGG | 0.625800 | 1.1:+17494452 | MS.gene026519:CDS |
GTATTTAAGGAACACATCGA+TGG | 0.628943 | 1.1:+17492435 | MS.gene026519:CDS |
TGGAATTTCAGACGTCCAGG+TGG | 0.632506 | 1.1:+17492640 | MS.gene026519:intron |
GAAGGCAGTTGCAGCAACTG+AGG | 0.641418 | 1.1:+17493177 | MS.gene026519:CDS |
GGTCCGTTCATACATTGAGA+AGG | 0.645504 | 1.1:+17491067 | MS.gene026519:CDS |
TCTTGCCAAACTTCTATCGG+AGG | 0.646586 | 1.1:+17492045 | MS.gene026519:CDS |
TTAAGGAACACATCGATGGA+GGG | 0.650369 | 1.1:+17492439 | MS.gene026519:CDS |
AGAGTCGTTACAGAAGCTGA+TGG | 0.650380 | 1.1:+17492754 | MS.gene026519:CDS |
GTGCCAGATGTCCATATTCG+GGG | 0.650531 | 1.1:-17492003 | None:intergenic |
ATGAAACAGATCGTATAACT+GGG | 0.654794 | 1.1:+17489838 | MS.gene026519:CDS |
TGAATGCAGAAAGAGCAACT+CGG | 0.664340 | 1.1:+17494369 | MS.gene026519:intron |
CGAGTTCCTTTAAAACCAGG+TGG | 0.665482 | 1.1:-17493150 | None:intergenic |
TGAGACCTGTCCACCAACGA+CGG | 0.678507 | 1.1:-17487006 | None:intergenic |
ATTTGCAAGGTATTGTCACA+CGG | 0.680058 | 1.1:+17488759 | MS.gene026519:intron |
CTAAGACAGTGCATGCACGT+TGG | 0.682128 | 1.1:-17486932 | None:intergenic |
AAAGTAGGAAGACAGTCACC+CGG | 0.692064 | 1.1:+17493447 | MS.gene026519:CDS |
GGTTCATTGTCAAGTCAGAG+AGG | 0.726563 | 1.1:+17494078 | MS.gene026519:CDS |
TGGAAAGGTGCCGATCAAAG+GGG | 0.733975 | 1.1:-17492717 | None:intergenic |
TGCAAGGTATTGTCACACGG+AGG | 0.743524 | 1.1:+17488762 | MS.gene026519:intron |
GAGGATTACAGCATCCACAG+AGG | 0.759003 | 1.1:-17492863 | None:intergenic |
AATTACATACCAGATCCACG+TGG | 0.836409 | 1.1:-17487189 | None:intergenic |
ACTGTCTTAGGTGATCATGG+AGG | 0.852828 | 1.1:+17486945 | MS.gene026519:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 17486891 | 17494503 | 17486891 | ID=MS.gene026519 |
chr1.1 | mRNA | 17486891 | 17494503 | 17486891 | ID=MS.gene026519.t1;Parent=MS.gene026519 |
chr1.1 | exon | 17486891 | 17487022 | 17486891 | ID=MS.gene026519.t1.exon1;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17486891 | 17487022 | 17486891 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17487138 | 17487201 | 17487138 | ID=MS.gene026519.t1.exon2;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17487138 | 17487201 | 17487138 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17488768 | 17488872 | 17488768 | ID=MS.gene026519.t1.exon3;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17488768 | 17488872 | 17488768 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17489814 | 17489915 | 17489814 | ID=MS.gene026519.t1.exon4;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17489814 | 17489915 | 17489814 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17490869 | 17490919 | 17490869 | ID=MS.gene026519.t1.exon5;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17490869 | 17490919 | 17490869 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17491027 | 17491088 | 17491027 | ID=MS.gene026519.t1.exon6;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17491027 | 17491088 | 17491027 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17491477 | 17491567 | 17491477 | ID=MS.gene026519.t1.exon7;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17491477 | 17491567 | 17491477 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17491721 | 17491785 | 17491721 | ID=MS.gene026519.t1.exon8;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17491721 | 17491785 | 17491721 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17491872 | 17492066 | 17491872 | ID=MS.gene026519.t1.exon9;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17491872 | 17492066 | 17491872 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17492180 | 17492299 | 17492180 | ID=MS.gene026519.t1.exon10;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17492180 | 17492299 | 17492180 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17492390 | 17492460 | 17492390 | ID=MS.gene026519.t1.exon11;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17492390 | 17492460 | 17492390 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17492651 | 17492876 | 17492651 | ID=MS.gene026519.t1.exon12;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17492651 | 17492876 | 17492651 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17493148 | 17493198 | 17493148 | ID=MS.gene026519.t1.exon13;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17493148 | 17493198 | 17493148 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17493371 | 17493614 | 17493371 | ID=MS.gene026519.t1.exon14;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17493371 | 17493614 | 17493371 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17494011 | 17494150 | 17494011 | ID=MS.gene026519.t1.exon15;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17494011 | 17494150 | 17494011 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
chr1.1 | exon | 17494378 | 17494503 | 17494378 | ID=MS.gene026519.t1.exon16;Parent=MS.gene026519.t1 |
chr1.1 | CDS | 17494378 | 17494503 | 17494378 | ID=cds.MS.gene026519.t1;Parent=MS.gene026519.t1 |
Gene Sequence |
Protein sequence |