Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02699.t1 | XP_003603229.1 | 97.9 | 241 | 5 | 0 | 1 | 241 | 64 | 304 | 4.50E-128 | 467.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02699.t1 | Q8IUS5 | 24.4 | 270 | 154 | 9 | 4 | 241 | 107 | 358 | 4.7e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02699.t1 | G7J939 | 97.9 | 241 | 5 | 0 | 1 | 241 | 64 | 304 | 3.2e-128 | 467.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02699 | MS.gene047420 | PPI |
| MS.gene02699 | MS.gene01173 | PPI |
| MS.gene02699 | MS.gene002205 | PPI |
| MS.gene02699 | MS.gene071915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02699.t1 | MTR_3g105290 | 97.925 | 241 | 5 | 0 | 1 | 241 | 64 | 304 | 7.45e-175 | 483 |
| MS.gene02699.t1 | MTR_3g105290 | 97.222 | 180 | 5 | 0 | 1 | 180 | 64 | 243 | 6.87e-128 | 362 |
| MS.gene02699.t1 | MTR_3g087050 | 39.241 | 237 | 141 | 3 | 2 | 237 | 64 | 298 | 1.04e-57 | 186 |
| MS.gene02699.t1 | MTR_5g020250 | 40.506 | 237 | 135 | 5 | 1 | 237 | 72 | 302 | 3.65e-54 | 177 |
| MS.gene02699.t1 | MTR_8g077290 | 40.948 | 232 | 133 | 4 | 6 | 237 | 78 | 305 | 8.36e-54 | 176 |
| MS.gene02699.t1 | MTR_5g064035 | 37.657 | 239 | 144 | 4 | 2 | 237 | 62 | 298 | 1.71e-53 | 174 |
| MS.gene02699.t1 | MTR_5g020320 | 39.914 | 233 | 136 | 4 | 6 | 238 | 69 | 297 | 9.30e-53 | 173 |
| MS.gene02699.t1 | MTR_2g008880 | 38.655 | 238 | 142 | 4 | 2 | 237 | 66 | 301 | 4.69e-52 | 172 |
| MS.gene02699.t1 | MTR_5g020260 | 39.916 | 238 | 131 | 6 | 5 | 238 | 74 | 303 | 3.64e-50 | 166 |
| MS.gene02699.t1 | MTR_8g077290 | 42.929 | 198 | 109 | 4 | 6 | 203 | 78 | 271 | 1.31e-46 | 156 |
| MS.gene02699.t1 | MTR_8g090060 | 31.933 | 238 | 125 | 4 | 2 | 237 | 62 | 264 | 3.55e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02699.t1 | AT5G21950 | 51.250 | 240 | 116 | 1 | 2 | 241 | 67 | 305 | 4.36e-91 | 271 |
| MS.gene02699.t1 | AT5G21950 | 51.250 | 240 | 116 | 1 | 2 | 241 | 119 | 357 | 2.66e-90 | 271 |
| MS.gene02699.t1 | AT4G33180 | 51.883 | 239 | 112 | 3 | 2 | 238 | 68 | 305 | 3.59e-85 | 256 |
| MS.gene02699.t1 | AT5G21950 | 52.475 | 202 | 95 | 1 | 2 | 203 | 67 | 267 | 1.52e-76 | 232 |
| MS.gene02699.t1 | AT5G09430 | 36.709 | 237 | 147 | 3 | 2 | 237 | 73 | 307 | 5.50e-52 | 171 |
| MS.gene02699.t1 | AT4G39955 | 36.555 | 238 | 147 | 4 | 2 | 237 | 62 | 297 | 6.16e-51 | 169 |
| MS.gene02699.t1 | AT1G78210 | 37.083 | 240 | 145 | 5 | 2 | 237 | 64 | 301 | 1.38e-49 | 165 |
| MS.gene02699.t1 | AT5G21950 | 50.340 | 147 | 72 | 1 | 2 | 148 | 67 | 212 | 1.11e-47 | 157 |
| MS.gene02699.t1 | AT5G21950 | 50.340 | 147 | 72 | 1 | 2 | 148 | 67 | 212 | 1.11e-47 | 157 |
| MS.gene02699.t1 | AT5G21950 | 50.340 | 147 | 72 | 1 | 2 | 148 | 119 | 264 | 5.29e-47 | 157 |
| MS.gene02699.t1 | AT5G21950 | 50.340 | 147 | 72 | 1 | 2 | 148 | 119 | 264 | 5.29e-47 | 157 |
| MS.gene02699.t1 | AT2G18360 | 37.500 | 232 | 141 | 4 | 6 | 237 | 79 | 306 | 3.71e-45 | 153 |
| MS.gene02699.t1 | AT1G72620 | 36.402 | 239 | 143 | 6 | 4 | 237 | 97 | 331 | 5.08e-45 | 154 |
| MS.gene02699.t1 | AT1G17430 | 36.100 | 241 | 143 | 6 | 4 | 237 | 93 | 329 | 5.43e-45 | 154 |
| MS.gene02699.t1 | AT4G33180 | 52.593 | 135 | 62 | 2 | 2 | 135 | 68 | 201 | 9.99e-45 | 149 |
| MS.gene02699.t1 | AT4G36610 | 36.638 | 232 | 143 | 4 | 6 | 237 | 77 | 304 | 4.83e-44 | 150 |
| MS.gene02699.t1 | AT2G18360 | 38.384 | 198 | 118 | 4 | 6 | 203 | 79 | 272 | 9.75e-38 | 133 |
Find 50 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCGGTTGTAAGAAATTT+AGG | 0.175192 | 3.3:+86496861 | None:intergenic |
| TGGAATAGTTGCGTATAATT+TGG | 0.256443 | 3.3:-86499135 | MS.gene02699:CDS |
| GTTCCCGATCTAATCTTCTT+TGG | 0.272608 | 3.3:-86499272 | MS.gene02699:CDS |
| TTGCAGGGTAATAAGTAAAA+AGG | 0.295321 | 3.3:-86496957 | MS.gene02699:intron |
| AGAGATTATACTCAGATAAT+AGG | 0.333887 | 3.3:-86498757 | MS.gene02699:CDS |
| AAAGTAGTTATTGCAAGTTC+TGG | 0.338855 | 3.3:-86499083 | MS.gene02699:CDS |
| GAAAAGATGGAGCTTCTAAA+TGG | 0.345980 | 3.3:-86498731 | MS.gene02699:CDS |
| TTTCTTGAGGGACTTCTTAA+GGG | 0.369669 | 3.3:-86498910 | MS.gene02699:intron |
| GGCAAGATTGGAATTGATAA+AGG | 0.387643 | 3.3:-86496936 | MS.gene02699:CDS |
| AAACATTTCACCTCTTCAAC+AGG | 0.392798 | 3.3:-86498681 | MS.gene02699:intron |
| GGAAAATTGTTGGAGAAGAT+AGG | 0.395031 | 3.3:-86499194 | MS.gene02699:CDS |
| TATAATTTGGCGAAGATGTT+GGG | 0.398616 | 3.3:-86499122 | MS.gene02699:CDS |
| ATACATACTCCTTCAATTCA+TGG | 0.401600 | 3.3:+86498528 | None:intergenic |
| CTTCTAAATGGATTGTCTAT+AGG | 0.430621 | 3.3:-86498719 | MS.gene02699:CDS |
| ATAATATTGTTGAATTCCTC+CGG | 0.432661 | 3.3:+86496884 | None:intergenic |
| TTCAACTGTTGAGGAGAAGA+AGG | 0.453370 | 3.3:+86498984 | None:intergenic |
| GGAATCAGTTGGAAAATTGT+TGG | 0.459337 | 3.3:-86499204 | MS.gene02699:CDS |
| TCCAGGAAGTTCTCGTATTG+TGG | 0.474193 | 3.3:-86498586 | MS.gene02699:intron |
| AATTCATGGGCCATCTGCAC+GGG | 0.491317 | 3.3:+86498542 | None:intergenic |
| AAATGGATTGTCTATAGGAC+AGG | 0.491723 | 3.3:-86498714 | MS.gene02699:CDS |
| GCAGATGGCCCATGAATTGA+AGG | 0.496257 | 3.3:-86498537 | MS.gene02699:CDS |
| GTGGCGTTGTTGAAAAGAGC+TGG | 0.502078 | 3.3:-86499035 | MS.gene02699:CDS |
| CATTTAGTTACCTGTTGAAG+AGG | 0.505749 | 3.3:+86498671 | None:intergenic |
| AGATAATAGGAAGGAAAAGA+TGG | 0.510309 | 3.3:-86498744 | MS.gene02699:CDS |
| GTATAATTTGGCGAAGATGT+TGG | 0.512839 | 3.3:-86499123 | MS.gene02699:CDS |
| CCAGGAAGTTCTCGTATTGT+GGG | 0.514777 | 3.3:-86498585 | MS.gene02699:intron |
| CAATATATTTCCCGTGCAGA+TGG | 0.516669 | 3.3:-86498552 | MS.gene02699:CDS |
| CACGTGGTGGGAACGAGTTA+TGG | 0.520296 | 3.3:-86499158 | MS.gene02699:CDS |
| GTCCTATGGCGATGTGGCAA+TGG | 0.525095 | 3.3:-86499337 | None:intergenic |
| TCTCCAAAGAAGATTAGATC+GGG | 0.527590 | 3.3:+86499269 | None:intergenic |
| AAATTTCAAGCGGAATCAGT+TGG | 0.532529 | 3.3:-86499215 | MS.gene02699:CDS |
| TTCTCCAAAGAAGATTAGAT+CGG | 0.537749 | 3.3:+86499268 | None:intergenic |
| TGTGCCACAAATTGAAAAGC+CGG | 0.542764 | 3.3:-86496903 | MS.gene02699:CDS |
| GTTGTTGAAAAGAGCTGGAT+TGG | 0.546954 | 3.3:-86499030 | MS.gene02699:CDS |
| AGAGGTTGAAGTGTGGAGCT+AGG | 0.550512 | 3.3:+86499297 | None:intergenic |
| TACATACTCCTTCAATTCAT+GGG | 0.553495 | 3.3:+86498529 | None:intergenic |
| CAATTCATGGGCCATCTGCA+CGG | 0.558178 | 3.3:+86498541 | None:intergenic |
| CGCCATTGCCACATCGCCAT+AGG | 0.577637 | 3.3:+86499335 | None:intergenic |
| ATTATACTCAGATAATAGGA+AGG | 0.616496 | 3.3:-86498753 | MS.gene02699:CDS |
| CAGGAAGTTCTCGTATTGTG+GGG | 0.624648 | 3.3:-86498584 | MS.gene02699:CDS |
| AGGAAGTTCTCGTATTGTGG+GGG | 0.630670 | 3.3:-86498583 | MS.gene02699:CDS |
| AAGAACAGAGAAATTTCAAG+CGG | 0.633582 | 3.3:-86499225 | MS.gene02699:CDS |
| AAGATTGGAATTGATAAAGG+AGG | 0.650039 | 3.3:-86496933 | MS.gene02699:CDS |
| GTGGTGGGAACGAGTTATGG+TGG | 0.651158 | 3.3:-86499155 | MS.gene02699:CDS |
| AGATTAGATCGGGAACGTAG+AGG | 0.675856 | 3.3:+86499279 | None:intergenic |
| GGAAGTTCTCGTATTGTGGG+GGG | 0.676838 | 3.3:-86498582 | MS.gene02699:CDS |
| GGAACGTAGAGGTTGAAGTG+TGG | 0.688244 | 3.3:+86499290 | None:intergenic |
| CATAACTCGTTCCCACCACG+TGG | 0.694739 | 3.3:+86499159 | None:intergenic |
| GCCACAAATTGAAAAGCCGG+AGG | 0.697095 | 3.3:-86496900 | MS.gene02699:CDS |
| TATGACAAAGAATCATAACG+TGG | 0.759539 | 3.3:-86499054 | MS.gene02699:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTCTCAAATATTTTAA+TGG | - | chr3.3:86498455-86498474 | MS.gene02699:intron | 10.0% |
| !!! | TGTAATTTTCTTAAAAAAAA+GGG | + | chr3.3:86498959-86498978 | None:intergenic | 10.0% |
| !!! | TTGTAATTTTCTTAAAAAAA+AGG | + | chr3.3:86498960-86498979 | None:intergenic | 10.0% |
| !! | AACTCTAAACTTTAATATAT+GGG | + | chr3.3:86498648-86498667 | None:intergenic | 15.0% |
| !! | ACTTATAATAAGTTCATAAT+GGG | - | chr3.3:86497756-86497775 | MS.gene02699:intron | 15.0% |
| !! | CATTTAATAAATAATGTATG+TGG | - | chr3.3:86498323-86498342 | MS.gene02699:intron | 15.0% |
| !! | TGAATGAAATTCAATAATAA+GGG | + | chr3.3:86498110-86498129 | None:intergenic | 15.0% |
| !! | TTGAATGAAATTCAATAATA+AGG | + | chr3.3:86498111-86498130 | None:intergenic | 15.0% |
| !!! | TAAAATTAGTTTATAACCTA+TGG | + | chr3.3:86497896-86497915 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATTTTGTTTGAG+AGG | - | chr3.3:86499143-86499162 | MS.gene02699:CDS | 15.0% |
| !! | CACTTATAATAAGTTCATAA+TGG | - | chr3.3:86497755-86497774 | MS.gene02699:intron | 20.0% |
| !! | CATTCAATAAATGATGTATA+TGG | + | chr3.3:86498362-86498381 | None:intergenic | 20.0% |
| !! | GAACTCTAAACTTTAATATA+TGG | + | chr3.3:86498649-86498668 | None:intergenic | 20.0% |
| !!! | ACACATTTAATTTACTTGTA+CGG | + | chr3.3:86497548-86497567 | None:intergenic | 20.0% |
| !!! | ATCTAGTATTCCAATTTTAT+TGG | + | chr3.3:86497848-86497867 | None:intergenic | 20.0% |
| !!! | ATTCAATAATAAGGGTATAA+TGG | + | chr3.3:86498102-86498121 | None:intergenic | 20.0% |
| !!! | TCTAGTATTCCAATTTTATT+GGG | + | chr3.3:86497847-86497866 | None:intergenic | 20.0% |
| ! | AAGAAAAAATTAGGCACAAA+AGG | + | chr3.3:86497264-86497283 | None:intergenic | 25.0% |
| ! | AAGTGTATCTATATGTTACT+AGG | + | chr3.3:86497740-86497759 | None:intergenic | 25.0% |
| ! | AATAAGTAAAAAGGCAAGAT+TGG | - | chr3.3:86499240-86499259 | MS.gene02699:CDS | 25.0% |
| ! | AATATATGGGAAATGTTAAC+CGG | + | chr3.3:86498635-86498654 | None:intergenic | 25.0% |
| ! | ACAAAATATTATGCAGGATT+TGG | + | chr3.3:86497686-86497705 | None:intergenic | 25.0% |
| ! | ACATTTCAATAAACCCATTT+CGG | + | chr3.3:86499068-86499087 | None:intergenic | 25.0% |
| ! | AGAAAAAATTAGGCACAAAA+GGG | + | chr3.3:86497263-86497282 | None:intergenic | 25.0% |
| ! | AGAGATTATACTCAGATAAT+AGG | - | chr3.3:86497431-86497450 | MS.gene02699:intron | 25.0% |
| ! | ATAACCTATGGATGATATTT+GGG | + | chr3.3:86497884-86497903 | None:intergenic | 25.0% |
| ! | ATAATATTGTTGAATTCCTC+CGG | + | chr3.3:86499307-86499326 | None:intergenic | 25.0% |
| ! | ATATAAGATTGATTGATTGG+TGG | - | chr3.3:86497779-86497798 | MS.gene02699:intron | 25.0% |
| ! | ATGGAGGTAGTTAAAAAAAA+GGG | - | chr3.3:86499008-86499027 | MS.gene02699:CDS | 25.0% |
| ! | ATTATACTCAGATAATAGGA+AGG | - | chr3.3:86497435-86497454 | MS.gene02699:intron | 25.0% |
| ! | ATTTCGGTTGTAAGAAATTT+AGG | + | chr3.3:86499330-86499349 | None:intergenic | 25.0% |
| ! | CTTCTTATTAACTTATTGCA+GGG | - | chr3.3:86499216-86499235 | MS.gene02699:CDS | 25.0% |
| ! | TATAACCTATGGATGATATT+TGG | + | chr3.3:86497885-86497904 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr3.3:86498140-86498159 | MS.gene02699:intron | 25.0% |
| ! | TCCTTATTAATTGTAGTTAG+TGG | + | chr3.3:86498144-86498163 | None:intergenic | 25.0% |
| ! | TTCACTATGTTAGGAATTTA+CGG | - | chr3.3:86498836-86498855 | MS.gene02699:intron | 25.0% |
| !!! | ATCAAATTTTTCAACTGTTG+AGG | + | chr3.3:86497216-86497235 | None:intergenic | 25.0% |
| !!! | TCTTACATTTGATTTGATGA+TGG | - | chr3.3:86498770-86498789 | MS.gene02699:intron | 25.0% |
| AAAATTATCCAATGGATCGA+TGG | - | chr3.3:86497952-86497971 | MS.gene02699:intron | 30.0% | |
| AAAGTAGTTATTGCAAGTTC+TGG | - | chr3.3:86497105-86497124 | MS.gene02699:intron | 30.0% | |
| AAGAACAGAGAAATTTCAAG+CGG | - | chr3.3:86496963-86496982 | MS.gene02699:intron | 30.0% | |
| AAGATTGGAATTGATAAAGG+AGG | - | chr3.3:86499255-86499274 | MS.gene02699:CDS | 30.0% | |
| AAGTCCCTCAAGAAAAAATT+AGG | + | chr3.3:86497273-86497292 | None:intergenic | 30.0% | |
| AGATAATAGGAAGGAAAAGA+TGG | - | chr3.3:86497444-86497463 | MS.gene02699:intron | 30.0% | |
| AGCACAAGTGAAAAGAAAAT+TGG | + | chr3.3:86497714-86497733 | None:intergenic | 30.0% | |
| ATAAGCAGTCCCAATAAAAT+TGG | - | chr3.3:86497835-86497854 | MS.gene02699:intron | 30.0% | |
| ATACATACTCCTTCAATTCA+TGG | + | chr3.3:86497663-86497682 | None:intergenic | 30.0% | |
| CCTGCAATAAGTTAATAAGA+AGG | + | chr3.3:86499218-86499237 | None:intergenic | 30.0% | |
| CCTTCTTATTAACTTATTGC+AGG | - | chr3.3:86499215-86499234 | MS.gene02699:CDS | 30.0% | |
| GATGGAGGTAGTTAAAAAAA+AGG | - | chr3.3:86499007-86499026 | MS.gene02699:CDS | 30.0% | |
| GCAGAAACAAAATATTATGC+AGG | + | chr3.3:86497692-86497711 | None:intergenic | 30.0% | |
| GGGATATAAGATTGATTGAT+TGG | - | chr3.3:86497776-86497795 | MS.gene02699:intron | 30.0% | |
| GTGATGTGAAATTACCAAAA+TGG | - | chr3.3:86498933-86498952 | MS.gene02699:CDS | 30.0% | |
| TACATACTCCTTCAATTCAT+GGG | + | chr3.3:86497662-86497681 | None:intergenic | 30.0% | |
| TAGATCCCAAAATTATCCAA+TGG | - | chr3.3:86497944-86497963 | MS.gene02699:intron | 30.0% | |
| TATAATTTGGCGAAGATGTT+GGG | - | chr3.3:86497066-86497085 | MS.gene02699:intron | 30.0% | |
| TATGACAAAGAATCATAACG+TGG | - | chr3.3:86497134-86497153 | MS.gene02699:intron | 30.0% | |
| TCACTATGTTAGGAATTTAC+GGG | - | chr3.3:86498837-86498856 | MS.gene02699:intron | 30.0% | |
| TGGAATAGTTGCGTATAATT+TGG | - | chr3.3:86497053-86497072 | MS.gene02699:intron | 30.0% | |
| TTCTCCAAAGAAGATTAGAT+CGG | + | chr3.3:86496923-86496942 | None:intergenic | 30.0% | |
| TTGCAGGGTAATAAGTAAAA+AGG | - | chr3.3:86499231-86499250 | MS.gene02699:CDS | 30.0% | |
| ! | AAGTTTCTTACATTTGAGAC+CGG | - | chr3.3:86498397-86498416 | MS.gene02699:intron | 30.0% |
| ! | AAGTTTCTTACATTTGAGAC+CGG | + | chr3.3:86498416-86498397 | None:intergenic | 30.0% |
| ! | AGGTTTGTGCACAATTTTTA+AGG | + | chr3.3:86498249-86498268 | None:intergenic | 30.0% |
| ! | ATCGATCCATTGGATAATTT+TGG | + | chr3.3:86497953-86497972 | None:intergenic | 30.0% |
| ! | ATTGATTGATTGGTGGTTAT+GGG | - | chr3.3:86497786-86497805 | MS.gene02699:intron | 30.0% |
| ! | CTTAAAAAAAAGGGCCATTT+TGG | + | chr3.3:86498950-86498969 | None:intergenic | 30.0% |
| ! | TCGATCCATTGGATAATTTT+GGG | + | chr3.3:86497952-86497971 | None:intergenic | 30.0% |
| !! | ATTTTAATGGTCATGCTAAC+CGG | - | chr3.3:86498468-86498487 | MS.gene02699:intron | 30.0% |
| !! | CTTCTAAATGGATTGTCTAT+AGG | - | chr3.3:86497469-86497488 | MS.gene02699:intron | 30.0% |
| !!! | TGTGCCTAATTTTTTCTTGA+GGG | - | chr3.3:86497266-86497285 | MS.gene02699:intron | 30.0% |
| !!! | TTGTGCCTAATTTTTTCTTG+AGG | - | chr3.3:86497265-86497284 | MS.gene02699:intron | 30.0% |
| AAACATTTCACCTCTTCAAC+AGG | - | chr3.3:86497507-86497526 | MS.gene02699:intron | 35.0% | |
| AAATTTCAAGCGGAATCAGT+TGG | - | chr3.3:86496973-86496992 | MS.gene02699:intron | 35.0% | |
| AAGAGAGATGAAAGAACACA+TGG | - | chr3.3:86498887-86498906 | MS.gene02699:intron | 35.0% | |
| ACGTAATTTGAACTCTCGTA+TGG | - | chr3.3:86497359-86497378 | MS.gene02699:intron | 35.0% | |
| AGATGAAAGAACACATGGAA+GGG | - | chr3.3:86498892-86498911 | MS.gene02699:intron | 35.0% | |
| ATCAATTTCATGGCCAAAGT+AGG | + | chr3.3:86497817-86497836 | None:intergenic | 35.0% | |
| ATTTCGCATTACTCATATCC+AGG | - | chr3.3:86497585-86497604 | MS.gene02699:intron | 35.0% | |
| CATGTATGCTTCACTATGTT+AGG | - | chr3.3:86498827-86498846 | MS.gene02699:intron | 35.0% | |
| CATTTAGTTACCTGTTGAAG+AGG | + | chr3.3:86497520-86497539 | None:intergenic | 35.0% | |
| GAAAAGATGGAGCTTCTAAA+TGG | - | chr3.3:86497457-86497476 | MS.gene02699:intron | 35.0% | |
| GAACTCTCGTATGGTAAAAA+GGG | - | chr3.3:86497368-86497387 | MS.gene02699:intron | 35.0% | |
| GACTTCTTTAACCAGAATCA+TGG | + | chr3.3:86498497-86498516 | None:intergenic | 35.0% | |
| GGAAAATTGTTGGAGAAGAT+AGG | - | chr3.3:86496994-86497013 | MS.gene02699:intron | 35.0% | |
| GGAATCAGTTGGAAAATTGT+TGG | - | chr3.3:86496984-86497003 | MS.gene02699:intron | 35.0% | |
| GGCAAGATTGGAATTGATAA+AGG | - | chr3.3:86499252-86499271 | MS.gene02699:CDS | 35.0% | |
| GTATAATTTGGCGAAGATGT+TGG | - | chr3.3:86497065-86497084 | MS.gene02699:intron | 35.0% | |
| TCAATTTCATGGCCAAAGTA+GGG | + | chr3.3:86497816-86497835 | None:intergenic | 35.0% | |
| TCGTATGGTAAAAAGGGAAA+GGG | - | chr3.3:86497374-86497393 | MS.gene02699:intron | 35.0% | |
| TCTCAAAATAATACTCCCTC+CGG | + | chr3.3:86498419-86498438 | None:intergenic | 35.0% | |
| TCTCCAAAGAAGATTAGATC+GGG | + | chr3.3:86496922-86496941 | None:intergenic | 35.0% | |
| TGAACTCTCGTATGGTAAAA+AGG | - | chr3.3:86497367-86497386 | MS.gene02699:intron | 35.0% | |
| TTAGCCCAAATATCATCCAT+AGG | - | chr3.3:86497877-86497896 | MS.gene02699:intron | 35.0% | |
| TTTCAATAAACCCATTTCGG+CGG | + | chr3.3:86499065-86499084 | None:intergenic | 35.0% | |
| TTTCTTGAGGGACTTCTTAA+GGG | - | chr3.3:86497278-86497297 | MS.gene02699:intron | 35.0% | |
| ! | GATAAGTTGACATCATTACG+TGG | - | chr3.3:86498670-86498689 | MS.gene02699:intron | 35.0% |
| ! | GATTGATTGATTGGTGGTTA+TGG | - | chr3.3:86497785-86497804 | MS.gene02699:intron | 35.0% |
| ! | GGGATCTAGTTTATAACCTA+TGG | + | chr3.3:86497932-86497951 | None:intergenic | 35.0% |
| ! | TGTTTTCTTAACCAATGTCC+TGG | - | chr3.3:86498604-86498623 | MS.gene02699:intron | 35.0% |
| ! | TTTTCTTGAGGGACTTCTTA+AGG | - | chr3.3:86497277-86497296 | MS.gene02699:intron | 35.0% |
| !! | AAATGGATTGTCTATAGGAC+AGG | - | chr3.3:86497474-86497493 | MS.gene02699:intron | 35.0% |
| !! | ATTTTTGCTCTTTGGAGACT+TGG | - | chr3.3:86498796-86498815 | MS.gene02699:intron | 35.0% |
| !! | GATGGTTGATTTTTGCTCTT+TGG | - | chr3.3:86498788-86498807 | MS.gene02699:intron | 35.0% |
| !!! | AGACACTTATTTTGAGACGA+AGG | + | chr3.3:86498004-86498023 | None:intergenic | 35.0% |
| AAAGAGAGAACTGAGGGAAT+AGG | - | chr3.3:86498864-86498883 | MS.gene02699:intron | 40.0% | |
| AAATGTTAACCGGTGTTTCC+AGG | + | chr3.3:86498625-86498644 | None:intergenic | 40.0% | |
| ATGAAATGCCATCGATCCAT+TGG | + | chr3.3:86497963-86497982 | None:intergenic | 40.0% | |
| CAATATATTTCCCGTGCAGA+TGG | - | chr3.3:86497636-86497655 | MS.gene02699:intron | 40.0% | |
| CTCACCTCATCATAACCTAT+GGG | + | chr3.3:86498715-86498734 | None:intergenic | 40.0% | |
| CTCGTATGGTAAAAAGGGAA+AGG | - | chr3.3:86497373-86497392 | MS.gene02699:intron | 40.0% | |
| GAGATGAAAGAACACATGGA+AGG | - | chr3.3:86498891-86498910 | MS.gene02699:intron | 40.0% | |
| GGGACTGCTTATCAATTTCA+TGG | + | chr3.3:86497827-86497846 | None:intergenic | 40.0% | |
| GTTATGGGTTTACCCTACTT+TGG | - | chr3.3:86497801-86497820 | MS.gene02699:intron | 40.0% | |
| GTTCCCGATCTAATCTTCTT+TGG | - | chr3.3:86496916-86496935 | MS.gene02699:CDS | 40.0% | |
| GTTGTTGAAAAGAGCTGGAT+TGG | - | chr3.3:86497158-86497177 | MS.gene02699:intron | 40.0% | |
| TACAAAACAGCCATCCACAT+TGG | - | chr3.3:86498975-86498994 | MS.gene02699:CDS | 40.0% | |
| TCACCTCATCATAACCTATG+GGG | + | chr3.3:86498714-86498733 | None:intergenic | 40.0% | |
| TGTGCCACAAATTGAAAAGC+CGG | - | chr3.3:86499285-86499304 | MS.gene02699:CDS | 40.0% | |
| TTAACCAGAATCATGGACAC+CGG | + | chr3.3:86498490-86498509 | None:intergenic | 40.0% | |
| TTCAACTGTTGAGGAGAAGA+AGG | + | chr3.3:86497207-86497226 | None:intergenic | 40.0% | |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr3.3:86498401-86498420 | MS.gene02699:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr3.3:86498420-86498401 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr3.3:86498400-86498419 | MS.gene02699:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr3.3:86498419-86498400 | None:intergenic | 40.0% |
| AACCAATGTCCTGGAAACAC+CGG | - | chr3.3:86498613-86498632 | MS.gene02699:intron | 45.0% | |
| ACACCCCATAGGTTATGATG+AGG | - | chr3.3:86498708-86498727 | MS.gene02699:CDS | 45.0% | |
| AGAACACATGGAAGGGTTTG+AGG | - | chr3.3:86498899-86498918 | MS.gene02699:intron | 45.0% | |
| AGATTAGATCGGGAACGTAG+AGG | + | chr3.3:86496912-86496931 | None:intergenic | 45.0% | |
| AGCAACTCGTGTAAGTCATG+TGG | + | chr3.3:86499194-86499213 | None:intergenic | 45.0% | |
| AGGAAGTTCTCGTATTGTGG+GGG | - | chr3.3:86497605-86497624 | MS.gene02699:intron | 45.0% | |
| CAGGAAGTTCTCGTATTGTG+GGG | - | chr3.3:86497604-86497623 | MS.gene02699:intron | 45.0% | |
| CATACACATGCCAATGTGGA+TGG | + | chr3.3:86498988-86499007 | None:intergenic | 45.0% | |
| CATTGGCATGTGTATGATGG+AGG | - | chr3.3:86498992-86499011 | MS.gene02699:CDS | 45.0% | |
| CCACATTGGCATGTGTATGA+TGG | - | chr3.3:86498989-86499008 | MS.gene02699:CDS | 45.0% | |
| CCAGGAAGTTCTCGTATTGT+GGG | - | chr3.3:86497603-86497622 | MS.gene02699:intron | 45.0% | |
| CCATAGGTTATGATGAGGTG+AGG | - | chr3.3:86498713-86498732 | MS.gene02699:CDS | 45.0% | |
| CCATCATACACATGCCAATG+TGG | + | chr3.3:86498992-86499011 | None:intergenic | 45.0% | |
| CCTCACCTCATCATAACCTA+TGG | + | chr3.3:86498716-86498735 | None:intergenic | 45.0% | |
| GAACACATGGAAGGGTTTGA+GGG | - | chr3.3:86498900-86498919 | MS.gene02699:intron | 45.0% | |
| GCAACTCGTGTAAGTCATGT+GGG | + | chr3.3:86499193-86499212 | None:intergenic | 45.0% | |
| GGAGAGAAAGAGAGAACTGA+GGG | - | chr3.3:86498858-86498877 | MS.gene02699:intron | 45.0% | |
| TCCAGGAAGTTCTCGTATTG+TGG | - | chr3.3:86497602-86497621 | MS.gene02699:intron | 45.0% | |
| ! | TCCTCCGGCTTTTCAATTTG+TGG | + | chr3.3:86499292-86499311 | None:intergenic | 45.0% |
| AACCGGTGTTTCCAGGACAT+TGG | + | chr3.3:86498618-86498637 | None:intergenic | 50.0% | |
| AACTGAAACCACCGCCGAAA+TGG | - | chr3.3:86499051-86499070 | MS.gene02699:CDS | 50.0% | |
| AATTCATGGGCCATCTGCAC+GGG | + | chr3.3:86497649-86497668 | None:intergenic | 50.0% | |
| ACTGAAACCACCGCCGAAAT+GGG | - | chr3.3:86499052-86499071 | MS.gene02699:CDS | 50.0% | |
| AGAGGTTGAAGTGTGGAGCT+AGG | + | chr3.3:86496894-86496913 | None:intergenic | 50.0% | |
| CAATAAACCCATTTCGGCGG+TGG | + | chr3.3:86499062-86499081 | None:intergenic | 50.0% | |
| CAATTCATGGGCCATCTGCA+CGG | + | chr3.3:86497650-86497669 | None:intergenic | 50.0% | |
| CCCACAATACGAGAACTTCC+TGG | + | chr3.3:86497606-86497625 | None:intergenic | 50.0% | |
| CCTTAAACGACTACTCCCTC+CGG | - | chr3.3:86498266-86498285 | MS.gene02699:intron | 50.0% | |
| CTAACCGGTGTCCATGATTC+TGG | - | chr3.3:86498483-86498502 | MS.gene02699:intron | 50.0% | |
| CTCACTCTTCTACACCCCAT+AGG | - | chr3.3:86498697-86498716 | MS.gene02699:CDS | 50.0% | |
| GCAGATGGCCCATGAATTGA+AGG | - | chr3.3:86497651-86497670 | MS.gene02699:intron | 50.0% | |
| GCCACAAATTGAAAAGCCGG+AGG | - | chr3.3:86499288-86499307 | MS.gene02699:CDS | 50.0% | |
| GGAACGTAGAGGTTGAAGTG+TGG | + | chr3.3:86496901-86496920 | None:intergenic | 50.0% | |
| GGAAGTTCTCGTATTGTGGG+GGG | - | chr3.3:86497606-86497625 | MS.gene02699:intron | 50.0% | |
| GGGAGAGAAAGAGAGAACTG+AGG | - | chr3.3:86498857-86498876 | MS.gene02699:intron | 50.0% | |
| GTGGCGTTGTTGAAAAGAGC+TGG | - | chr3.3:86497153-86497172 | MS.gene02699:intron | 50.0% | |
| TCGTGTAAGTCATGTGGGCA+TGG | + | chr3.3:86499188-86499207 | None:intergenic | 50.0% | |
| !! | AGGTGTGAAAAAGTGCCACG+TGG | - | chr3.3:86497014-86497033 | MS.gene02699:intron | 50.0% |
| !! | GTGAAAAAGTGCCACGTGGT+GGG | - | chr3.3:86497018-86497037 | MS.gene02699:intron | 50.0% |
| !! | TGTGAAAAAGTGCCACGTGG+TGG | - | chr3.3:86497017-86497036 | MS.gene02699:intron | 50.0% |
| CACATGGAAGGGTTTGAGGG+CGG | - | chr3.3:86498903-86498922 | MS.gene02699:intron | 55.0% | |
| CATAACTCGTTCCCACCACG+TGG | + | chr3.3:86497032-86497051 | None:intergenic | 55.0% | |
| CCGGAGGGAGTAGTCGTTTA+AGG | + | chr3.3:86498269-86498288 | None:intergenic | 55.0% | |
| ! | CACGTGGTGGGAACGAGTTA+TGG | - | chr3.3:86497030-86497049 | MS.gene02699:intron | 55.0% |
| ! | GTGGTGGGAACGAGTTATGG+TGG | - | chr3.3:86497033-86497052 | MS.gene02699:intron | 55.0% |
| AGGGTTTGAGGGCGGTGTGT+TGG | - | chr3.3:86498911-86498930 | MS.gene02699:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86496856 | 86499354 | 86496856 | ID=MS.gene02699 |
| chr3.3 | mRNA | 86496856 | 86499354 | 86496856 | ID=MS.gene02699.t1;Parent=MS.gene02699 |
| chr3.3 | exon | 86498911 | 86499354 | 86498911 | ID=MS.gene02699.t1.exon1;Parent=MS.gene02699.t1 |
| chr3.3 | CDS | 86498911 | 86499354 | 86498911 | ID=cds.MS.gene02699.t1;Parent=MS.gene02699.t1 |
| chr3.3 | exon | 86498682 | 86498777 | 86498682 | ID=MS.gene02699.t1.exon2;Parent=MS.gene02699.t1 |
| chr3.3 | CDS | 86498682 | 86498777 | 86498682 | ID=cds.MS.gene02699.t1;Parent=MS.gene02699.t1 |
| chr3.3 | exon | 86498536 | 86498603 | 86498536 | ID=MS.gene02699.t1.exon3;Parent=MS.gene02699.t1 |
| chr3.3 | CDS | 86498536 | 86498603 | 86498536 | ID=cds.MS.gene02699.t1;Parent=MS.gene02699.t1 |
| chr3.3 | exon | 86496856 | 86496973 | 86496856 | ID=MS.gene02699.t1.exon4;Parent=MS.gene02699.t1 |
| chr3.3 | CDS | 86496856 | 86496973 | 86496856 | ID=cds.MS.gene02699.t1;Parent=MS.gene02699.t1 |
| Gene Sequence |
| Protein sequence |
