Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027217.t1 | XP_003602984.1 | 94.4 | 391 | 22 | 0 | 1 | 391 | 1 | 391 | 3.50E-207 | 730.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027217.t1 | Q9S7T8 | 50.0 | 392 | 182 | 5 | 5 | 387 | 4 | 390 | 3.7e-104 | 379.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027217.t1 | G7J5R9 | 94.4 | 391 | 22 | 0 | 1 | 391 | 1 | 391 | 2.6e-207 | 730.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene027217 | PPI |
| MS.gene027217 | MS.gene045585 | PPI |
| MS.gene027217 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene027217 | PPI |
| MS.gene027217 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027217.t1 | MTR_3g101130 | 94.373 | 391 | 22 | 0 | 1 | 391 | 1 | 391 | 0.0 | 750 |
| MS.gene027217.t1 | MTR_3g101180 | 65.163 | 399 | 128 | 4 | 1 | 388 | 1 | 399 | 9.70e-177 | 498 |
| MS.gene027217.t1 | MTR_7g050750 | 63.846 | 390 | 136 | 2 | 5 | 389 | 7 | 396 | 2.18e-173 | 489 |
| MS.gene027217.t1 | MTR_8g461160 | 63.265 | 392 | 139 | 2 | 1 | 387 | 1 | 392 | 4.45e-171 | 483 |
| MS.gene027217.t1 | MTR_7g050810 | 62.564 | 390 | 139 | 3 | 6 | 389 | 16 | 404 | 3.20e-166 | 471 |
| MS.gene027217.t1 | MTR_3g101010 | 63.496 | 389 | 135 | 3 | 5 | 389 | 4 | 389 | 3.76e-166 | 471 |
| MS.gene027217.t1 | MTR_3g101200 | 63.496 | 389 | 118 | 3 | 1 | 388 | 26 | 391 | 1.75e-164 | 466 |
| MS.gene027217.t1 | MTR_3g018740 | 62.341 | 393 | 135 | 5 | 1 | 387 | 1 | 386 | 6.04e-164 | 465 |
| MS.gene027217.t1 | MTR_7g451890 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 1.67e-162 | 462 |
| MS.gene027217.t1 | MTR_7g047780 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 5.94e-161 | 458 |
| MS.gene027217.t1 | MTR_4g045707 | 60.152 | 394 | 146 | 4 | 1 | 389 | 1 | 388 | 1.94e-159 | 453 |
| MS.gene027217.t1 | MTR_8g027395 | 60.305 | 393 | 145 | 4 | 1 | 389 | 12 | 397 | 1.69e-157 | 449 |
| MS.gene027217.t1 | MTR_4g088525 | 62.810 | 363 | 126 | 3 | 30 | 388 | 11 | 368 | 1.97e-154 | 440 |
| MS.gene027217.t1 | MTR_3g101030 | 58.333 | 396 | 140 | 4 | 15 | 389 | 38 | 429 | 9.36e-154 | 441 |
| MS.gene027217.t1 | MTR_8g027420 | 58.270 | 393 | 142 | 4 | 1 | 389 | 1 | 375 | 9.68e-150 | 428 |
| MS.gene027217.t1 | MTR_2g046030 | 57.398 | 392 | 149 | 7 | 5 | 387 | 4 | 386 | 3.40e-146 | 420 |
| MS.gene027217.t1 | MTR_2g045980 | 56.888 | 392 | 151 | 6 | 5 | 387 | 4 | 386 | 2.48e-145 | 418 |
| MS.gene027217.t1 | MTR_3g048000 | 57.326 | 389 | 134 | 6 | 7 | 388 | 28 | 391 | 3.28e-145 | 417 |
| MS.gene027217.t1 | MTR_4g088535 | 55.471 | 393 | 147 | 6 | 1 | 388 | 1 | 370 | 9.94e-136 | 393 |
| MS.gene027217.t1 | MTR_3g101050 | 55.556 | 387 | 147 | 7 | 7 | 387 | 29 | 396 | 5.20e-133 | 387 |
| MS.gene027217.t1 | MTR_3g015620 | 55.527 | 389 | 140 | 6 | 6 | 387 | 16 | 378 | 1.32e-131 | 382 |
| MS.gene027217.t1 | MTR_3g102920 | 54.177 | 395 | 136 | 6 | 1 | 388 | 53 | 409 | 7.99e-130 | 379 |
| MS.gene027217.t1 | MTR_3g101190 | 52.342 | 363 | 105 | 4 | 31 | 389 | 14 | 312 | 5.86e-116 | 340 |
| MS.gene027217.t1 | MTR_3g100995 | 63.780 | 254 | 86 | 3 | 139 | 389 | 14 | 264 | 3.36e-111 | 326 |
| MS.gene027217.t1 | MTR_7g050830 | 54.459 | 314 | 112 | 2 | 6 | 299 | 16 | 318 | 1.41e-107 | 319 |
| MS.gene027217.t1 | MTR_3g015760 | 62.308 | 260 | 91 | 4 | 132 | 387 | 23 | 279 | 5.50e-99 | 296 |
| MS.gene027217.t1 | MTR_3g100010 | 49.051 | 316 | 113 | 3 | 31 | 313 | 40 | 340 | 1.06e-97 | 295 |
| MS.gene027217.t1 | MTR_3g018747 | 57.088 | 261 | 91 | 3 | 132 | 387 | 9 | 253 | 9.34e-94 | 281 |
| MS.gene027217.t1 | MTR_3g114310 | 41.995 | 381 | 196 | 10 | 28 | 389 | 36 | 410 | 2.98e-84 | 263 |
| MS.gene027217.t1 | MTR_3g100520 | 57.399 | 223 | 75 | 4 | 173 | 389 | 1 | 209 | 5.69e-81 | 247 |
| MS.gene027217.t1 | MTR_3g111160 | 61.574 | 216 | 73 | 3 | 180 | 389 | 9 | 220 | 4.55e-80 | 245 |
| MS.gene027217.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 3.89e-74 | 229 |
| MS.gene027217.t1 | MTR_3g101110 | 53.390 | 236 | 77 | 3 | 135 | 363 | 71 | 280 | 4.23e-74 | 232 |
| MS.gene027217.t1 | MTR_2g046410 | 60.000 | 205 | 69 | 4 | 192 | 387 | 147 | 347 | 7.94e-74 | 234 |
| MS.gene027217.t1 | MTR_3g101150 | 64.375 | 160 | 46 | 3 | 238 | 388 | 1 | 158 | 2.11e-61 | 195 |
| MS.gene027217.t1 | MTR_3g101020 | 56.757 | 185 | 54 | 3 | 206 | 389 | 1 | 160 | 1.56e-60 | 193 |
| MS.gene027217.t1 | MTR_3g102870 | 57.143 | 154 | 62 | 1 | 198 | 347 | 4 | 157 | 5.83e-52 | 171 |
| MS.gene027217.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 1.97e-47 | 159 |
| MS.gene027217.t1 | MTR_3g100990 | 62.791 | 129 | 46 | 1 | 4 | 132 | 3 | 129 | 2.99e-42 | 155 |
| MS.gene027217.t1 | MTR_3g101140 | 49.580 | 119 | 49 | 2 | 271 | 389 | 9 | 116 | 7.22e-26 | 101 |
| MS.gene027217.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 5.82e-20 | 84.3 |
| MS.gene027217.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.82e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027217.t1 | AT1G47710 | 50.000 | 392 | 182 | 5 | 5 | 387 | 4 | 390 | 1.34e-132 | 385 |
| MS.gene027217.t1 | AT1G47710 | 50.000 | 392 | 182 | 5 | 5 | 387 | 31 | 417 | 7.21e-132 | 385 |
| MS.gene027217.t1 | AT3G45220 | 43.909 | 394 | 200 | 5 | 6 | 386 | 5 | 390 | 1.87e-111 | 332 |
| MS.gene027217.t1 | AT2G25240 | 44.730 | 389 | 196 | 8 | 6 | 386 | 5 | 382 | 2.07e-107 | 321 |
| MS.gene027217.t1 | AT2G26390 | 41.837 | 392 | 207 | 6 | 6 | 386 | 5 | 386 | 2.06e-100 | 303 |
| MS.gene027217.t1 | AT1G62170 | 43.443 | 366 | 177 | 6 | 29 | 386 | 88 | 431 | 1.85e-95 | 292 |
| MS.gene027217.t1 | AT1G64030 | 42.526 | 388 | 197 | 7 | 5 | 386 | 4 | 371 | 2.19e-95 | 290 |
| MS.gene027217.t1 | AT2G14540 | 43.132 | 364 | 180 | 6 | 29 | 386 | 55 | 397 | 1.02e-93 | 287 |
| MS.gene027217.t1 | AT1G62170 | 39.850 | 399 | 177 | 7 | 29 | 386 | 88 | 464 | 1.42e-88 | 275 |
| MS.gene027217.t1 | AT2G35580 | 39.075 | 389 | 209 | 9 | 5 | 386 | 4 | 371 | 2.34e-83 | 259 |
| MS.gene027217.t1 | AT1G64010 | 47.222 | 216 | 91 | 5 | 173 | 386 | 1 | 195 | 1.50e-62 | 199 |
| MS.gene027217.t1 | AT1G64010 | 46.766 | 201 | 84 | 5 | 188 | 386 | 2 | 181 | 2.53e-55 | 181 |
| MS.gene027217.t1 | AT1G62160 | 41.206 | 199 | 88 | 5 | 195 | 386 | 42 | 218 | 2.41e-35 | 129 |
| MS.gene027217.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 129 | 244 | 5 | 120 | 1.54e-32 | 119 |
| MS.gene027217.t1 | AT1G51330 | 44.643 | 112 | 59 | 2 | 130 | 238 | 29 | 140 | 4.73e-25 | 101 |
Find 70 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATGCACTATACTTTAA+AGG | 0.181731 | 3.4:+46067136 | MS.gene027217:CDS |
| CCACGTTTCAAAATTTATTC+TGG | 0.250552 | 3.4:+46067466 | MS.gene027217:CDS |
| ATATCGTTGCCTTTCTTATA+AGG | 0.269460 | 3.4:-46067304 | None:intergenic |
| AAATGGCGAACTCTCCGATT+TGG | 0.294557 | 3.4:+46067557 | MS.gene027217:CDS |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.4:-46066760 | None:intergenic |
| GGTCAGCTACAAAGTCTATT+GGG | 0.353199 | 3.4:-46067693 | None:intergenic |
| AAGTGATAGTGGGTGACTTC+AGG | 0.357075 | 3.4:+46067440 | MS.gene027217:CDS |
| AATGGCGAACTCTCCGATTT+GGG | 0.362900 | 3.4:+46067558 | MS.gene027217:CDS |
| AGTATCAACAATTTCTTTGA+AGG | 0.389170 | 3.4:-46066874 | None:intergenic |
| TCTAATGTGTCAAAGGAGTT+AGG | 0.389227 | 3.4:+46067499 | MS.gene027217:CDS |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.4:+46066711 | MS.gene027217:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.4:+46067082 | MS.gene027217:CDS |
| TGGTCAGCTACAAAGTCTAT+TGG | 0.402096 | 3.4:-46067694 | None:intergenic |
| CTACTATGCTGAGCACAGTT+TGG | 0.403622 | 3.4:-46066662 | None:intergenic |
| TCTGGTACAATACTCTTTGT+TGG | 0.408824 | 3.4:+46067748 | MS.gene027217:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.420477 | 3.4:+46067295 | MS.gene027217:CDS |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.4:+46067375 | MS.gene027217:CDS |
| TCCACGTAAGGAAGTGATAG+TGG | 0.448188 | 3.4:+46067429 | MS.gene027217:CDS |
| CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.4:-46067771 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.4:-46067406 | None:intergenic |
| CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.4:+46067772 | MS.gene027217:CDS |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.4:-46066688 | None:intergenic |
| TTGATAAGAGACGATTTGTC+TGG | 0.469705 | 3.4:+46067730 | MS.gene027217:CDS |
| TTAAATTAGCGATTGATTCG+CGG | 0.473914 | 3.4:-46066554 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.4:-46067355 | None:intergenic |
| GTCAAACCTCCATCAGAGAA+AGG | 0.475976 | 3.4:-46067532 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.4:-46067401 | None:intergenic |
| GTCACTAGTACCGGACTATC+GGG | 0.484269 | 3.4:+46067643 | MS.gene027217:CDS |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.4:+46067213 | MS.gene027217:CDS |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.494572 | 3.4:+46066677 | MS.gene027217:CDS |
| TCAACAATTTCTTTGAAGGA+AGG | 0.496277 | 3.4:-46066870 | None:intergenic |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.4:-46066749 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.4:-46066805 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.4:-46066742 | None:intergenic |
| TGAACTTTCTAATGTGTCAA+AGG | 0.513651 | 3.4:+46067492 | MS.gene027217:CDS |
| AGTCACTAGTACCGGACTAT+CGG | 0.518778 | 3.4:+46067642 | MS.gene027217:CDS |
| GAAGGAAGGATAAACAGAAA+GGG | 0.528246 | 3.4:-46066856 | None:intergenic |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.4:-46067356 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.534096 | 3.4:+46067349 | MS.gene027217:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.4:+46067417 | MS.gene027217:CDS |
| TGAAGGAAGGATAAACAGAA+AGG | 0.536463 | 3.4:-46066857 | None:intergenic |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.4:+46066789 | MS.gene027217:CDS |
| AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.4:-46067571 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.555454 | 3.4:+46066678 | MS.gene027217:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.4:-46066694 | None:intergenic |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.4:-46066773 | None:intergenic |
| CCCACTATCACTTCCTTACG+TGG | 0.567927 | 3.4:-46067430 | None:intergenic |
| GTGCTCAGCATAGTAGCTGC+CGG | 0.569522 | 3.4:+46066669 | MS.gene027217:CDS |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.4:+46067143 | MS.gene027217:CDS |
| ACGAGCACATCCCGATAGTC+CGG | 0.571925 | 3.4:-46067653 | None:intergenic |
| GCTGCTGCAGTCACTAGTAC+CGG | 0.582339 | 3.4:+46067634 | MS.gene027217:CDS |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.4:-46067210 | None:intergenic |
| ATTGGGGTCAGAATTGAAGT+AGG | 0.606727 | 3.4:-46067676 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.4:-46066804 | None:intergenic |
| CTTTCTTATAAGGAAGACGA+AGG | 0.614295 | 3.4:-46067294 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.4:-46066702 | None:intergenic |
| ATCACTTGATTTCATAAACA+AGG | 0.616736 | 3.4:+46066917 | MS.gene027217:CDS |
| GTTAAGCTATTAATTGACCC+AGG | 0.618787 | 3.4:-46067100 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.4:-46066781 | None:intergenic |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.4:-46066766 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+GGG | 0.633032 | 3.4:+46067430 | MS.gene027217:CDS |
| AGCACAGTTTGGAGTGACAA+CGG | 0.634618 | 3.4:-46066651 | None:intergenic |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.4:+46067083 | MS.gene027217:CDS |
| GAAATCAAGTGATCTGAGAG+TGG | 0.639757 | 3.4:-46066907 | None:intergenic |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.4:+46066792 | MS.gene027217:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.4:-46067198 | None:intergenic |
| GTCAGCTACAAAGTCTATTG+GGG | 0.649276 | 3.4:-46067692 | None:intergenic |
| AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.4:-46067784 | None:intergenic |
| AATTAGCGATTGATTCGCGG+TGG | 0.680650 | 3.4:-46066551 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.761019 | 3.4:-46066816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGGAAAATATATAT+AGG | - | chr3.4:46066945-46066964 | None:intergenic | 15.0% |
| !!! | TTTTACTGTTCAAAAAAAGA+AGG | - | chr3.4:46066959-46066978 | None:intergenic | 20.0% |
| ! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.4:46067574-46067593 | None:intergenic | 25.0% |
| ! | AGTATCAACAATTTCTTTGA+AGG | - | chr3.4:46066877-46066896 | None:intergenic | 25.0% |
| ! | ATCACTTGATTTCATAAACA+AGG | + | chr3.4:46066917-46066936 | MS.gene027217:CDS | 25.0% |
| ! | CTCTTATCAAAAACATGAAA+GGG | - | chr3.4:46067720-46067739 | None:intergenic | 25.0% |
| ! | GTTAATGCACTATACTTTAA+AGG | + | chr3.4:46067136-46067155 | MS.gene027217:CDS | 25.0% |
| ! | TCTCTTATCAAAAACATGAA+AGG | - | chr3.4:46067721-46067740 | None:intergenic | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+CGG | + | chr3.4:46067262-46067281 | MS.gene027217:CDS | 25.0% |
| !!! | TGTTTTTGATAGCAAATGTT+TGG | - | chr3.4:46066601-46066620 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGAAGCATCAAA+TGG | - | chr3.4:46067175-46067194 | None:intergenic | 25.0% |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.4:46067409-46067428 | None:intergenic | 30.0% | |
| ATATCGTTGCCTTTCTTATA+AGG | - | chr3.4:46067307-46067326 | None:intergenic | 30.0% | |
| CCACGTTTCAAAATTTATTC+TGG | + | chr3.4:46067466-46067485 | MS.gene027217:CDS | 30.0% | |
| CGTCAAAAAAGTGAATGTAT+GGG | + | chr3.4:46067036-46067055 | MS.gene027217:CDS | 30.0% | |
| TATATTTGATGCTGTCGTAA+AGG | + | chr3.4:46067003-46067022 | MS.gene027217:intron | 30.0% | |
| TGAACTTTCTAATGTGTCAA+AGG | + | chr3.4:46067492-46067511 | MS.gene027217:CDS | 30.0% | |
| TTATCAAAAACATGAAAGGG+TGG | - | chr3.4:46067717-46067736 | None:intergenic | 30.0% | |
| ! | TCAACAATTTCTTTGAAGGA+AGG | - | chr3.4:46066873-46066892 | None:intergenic | 30.0% |
| ! | TTCTTTTTGCTAGTCATGAA+GGG | - | chr3.4:46067241-46067260 | None:intergenic | 30.0% |
| !! | TTAAATTAGCGATTGATTCG+CGG | - | chr3.4:46066557-46066576 | None:intergenic | 30.0% |
| !!! | CCAGAATAAATTTTGAAACG+TGG | - | chr3.4:46067469-46067488 | None:intergenic | 30.0% |
| !!! | CCATACATTCACTTTTTTGA+CGG | - | chr3.4:46067038-46067057 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.4:46067082-46067101 | MS.gene027217:CDS | 35.0% | |
| CCGTCAAAAAAGTGAATGTA+TGG | + | chr3.4:46067035-46067054 | MS.gene027217:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.4:46067295-46067314 | MS.gene027217:CDS | 35.0% | |
| CTTTCTTATAAGGAAGACGA+AGG | - | chr3.4:46067297-46067316 | None:intergenic | 35.0% | |
| GAAGGAAGGATAAACAGAAA+GGG | - | chr3.4:46066859-46066878 | None:intergenic | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.4:46067404-46067423 | None:intergenic | 35.0% | |
| GTTAAGCTATTAATTGACCC+AGG | - | chr3.4:46067103-46067122 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.4:46067359-46067378 | None:intergenic | 35.0% | |
| TCTAATGTGTCAAAGGAGTT+AGG | + | chr3.4:46067499-46067518 | MS.gene027217:CDS | 35.0% | |
| TCTGGTACAATACTCTTTGT+TGG | + | chr3.4:46067748-46067767 | MS.gene027217:CDS | 35.0% | |
| TGAAGGAAGGATAAACAGAA+AGG | - | chr3.4:46066860-46066879 | None:intergenic | 35.0% | |
| TGATGGAGGTTTGACAAAAA+TGG | + | chr3.4:46067540-46067559 | MS.gene027217:CDS | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.4:46067055-46067074 | MS.gene027217:CDS | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.4:46067083-46067102 | MS.gene027217:CDS | 35.0% | |
| TTGATAAGAGACGATTTGTC+TGG | + | chr3.4:46067730-46067749 | MS.gene027217:CDS | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.4:46067143-46067162 | MS.gene027217:CDS | 35.0% |
| ! | CTTCTTTTTGCTAGTCATGA+AGG | - | chr3.4:46067242-46067261 | None:intergenic | 35.0% |
| ! | TGTCTTTTGTCAACTCTGTT+TGG | + | chr3.4:46066823-46066842 | MS.gene027217:CDS | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.4:46066727-46066746 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.4:46067375-46067394 | MS.gene027217:CDS | 35.0% |
| !! | GTTGTTTTACCTTTCTCTGA+TGG | + | chr3.4:46067523-46067542 | MS.gene027217:CDS | 35.0% |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.4:46067358-46067377 | None:intergenic | 40.0% | |
| ATTGGGGTCAGAATTGAAGT+AGG | - | chr3.4:46067679-46067698 | None:intergenic | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.4:46067417-46067436 | MS.gene027217:CDS | 40.0% | |
| GAAATCAAGTGATCTGAGAG+TGG | - | chr3.4:46066910-46066929 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.4:46066819-46066838 | None:intergenic | 40.0% | |
| GGTCAGCTACAAAGTCTATT+GGG | - | chr3.4:46067696-46067715 | None:intergenic | 40.0% | |
| GTCAGCTACAAAGTCTATTG+GGG | - | chr3.4:46067695-46067714 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.4:46066745-46066764 | None:intergenic | 40.0% | |
| TGGTCAGCTACAAAGTCTAT+TGG | - | chr3.4:46067697-46067716 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCTCTGATGG+AGG | + | chr3.4:46067526-46067545 | MS.gene027217:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.4:46066731-46066750 | None:intergenic | 40.0% |
| AAATGGCGAACTCTCCGATT+TGG | + | chr3.4:46067557-46067576 | MS.gene027217:CDS | 45.0% | |
| AATGGCGAACTCTCCGATTT+GGG | + | chr3.4:46067558-46067577 | MS.gene027217:CDS | 45.0% | |
| CAACAAGAGGATTGAGCACT+TGG | - | chr3.4:46067774-46067793 | None:intergenic | 45.0% | |
| CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.4:46067772-46067791 | MS.gene027217:CDS | 45.0% | |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.4:46067201-46067220 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+GGG | + | chr3.4:46067430-46067449 | MS.gene027217:CDS | 45.0% | |
| CTACTATGCTGAGCACAGTT+TGG | - | chr3.4:46066665-46066684 | None:intergenic | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.4:46066752-46066771 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.4:46066763-46066782 | None:intergenic | 45.0% | |
| GTCAAACCTCCATCAGAGAA+AGG | - | chr3.4:46067535-46067554 | None:intergenic | 45.0% | |
| TCCACGTAAGGAAGTGATAG+TGG | + | chr3.4:46067429-46067448 | MS.gene027217:CDS | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.4:46067349-46067368 | MS.gene027217:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.4:46066654-46066673 | None:intergenic | 45.0% |
| ! | AGTCACTAGTACCGGACTAT+CGG | + | chr3.4:46067642-46067661 | MS.gene027217:CDS | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.4:46067196-46067215 | MS.gene027217:CDS | 45.0% |
| !! | AAGTGATAGTGGGTGACTTC+AGG | + | chr3.4:46067440-46067459 | MS.gene027217:CDS | 45.0% |
| !! | AATTAGCGATTGATTCGCGG+TGG | - | chr3.4:46066554-46066573 | None:intergenic | 45.0% |
| !! | ATCAAATATAAAATTATATT+AGG | - | chr3.4:46066993-46067012 | None:intergenic | 5.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.4:46066808-46066827 | None:intergenic | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.4:46066769-46066788 | None:intergenic | 50.0% | |
| CCCACTATCACTTCCTTACG+TGG | - | chr3.4:46067433-46067452 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.4:46066776-46066795 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.4:46066807-46066826 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.4:46066705-46066724 | None:intergenic | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.4:46067199-46067218 | MS.gene027217:CDS | 50.0% |
| ! | GTCACTAGTACCGGACTATC+GGG | + | chr3.4:46067643-46067662 | MS.gene027217:CDS | 50.0% |
| ACGAGCACATCCCGATAGTC+CGG | - | chr3.4:46067656-46067675 | None:intergenic | 55.0% | |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.4:46066711-46066730 | MS.gene027217:CDS | 55.0% | |
| GCTGCTGCAGTCACTAGTAC+CGG | + | chr3.4:46067634-46067653 | MS.gene027217:CDS | 55.0% | |
| GTGCTCAGCATAGTAGCTGC+CGG | + | chr3.4:46066669-46066688 | MS.gene027217:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.4:46067213-46067232 | MS.gene027217:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.4:46067213-46067232 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.4:46066678-46066697 | MS.gene027217:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.4:46066784-46066803 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.4:46066789-46066808 | MS.gene027217:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.4:46066697-46066716 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.4:46066691-46066710 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.4:46066677-46066696 | MS.gene027217:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.4:46066792-46066811 | MS.gene027217:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 46066543 | 46067804 | 46066543 | ID=MS.gene027217 |
| chr3.4 | mRNA | 46066543 | 46067804 | 46066543 | ID=MS.gene027217.t1;Parent=MS.gene027217 |
| chr3.4 | exon | 46066543 | 46066938 | 46066543 | ID=MS.gene027217.t1.exon1;Parent=MS.gene027217.t1 |
| chr3.4 | CDS | 46066543 | 46066938 | 46066543 | ID=cds.MS.gene027217.t1;Parent=MS.gene027217.t1 |
| chr3.4 | exon | 46067025 | 46067804 | 46067025 | ID=MS.gene027217.t1.exon2;Parent=MS.gene027217.t1 |
| chr3.4 | CDS | 46067025 | 46067804 | 46067025 | ID=cds.MS.gene027217.t1;Parent=MS.gene027217.t1 |
| Gene Sequence |
| Protein sequence |
