Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027219.t1 | AES73228.2 | 80.3 | 422 | 46 | 4 | 1 | 410 | 1 | 397 | 2.20E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027219.t1 | Q9S7T8 | 49.6 | 381 | 160 | 5 | 60 | 409 | 11 | 390 | 1.3e-96 | 354.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027219.t1 | G7J5R2 | 80.3 | 422 | 46 | 4 | 1 | 410 | 1 | 397 | 1.6e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027219 | MS.gene045585 | PPI |
| MS.gene027219 | MS.gene065945 | PPI |
| MS.gene027219 | MS.gene065944 | PPI |
| MS.gene027219 | MS.gene006610 | PPI |
| MS.gene027219 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027219.t1 | MTR_3g101050 | 81.043 | 422 | 43 | 5 | 1 | 410 | 1 | 397 | 0.0 | 641 |
| MS.gene027219.t1 | MTR_3g101030 | 68.384 | 427 | 79 | 7 | 39 | 411 | 5 | 429 | 0.0 | 543 |
| MS.gene027219.t1 | MTR_3g101010 | 72.846 | 383 | 73 | 3 | 58 | 411 | 9 | 389 | 0.0 | 528 |
| MS.gene027219.t1 | MTR_3g018740 | 66.057 | 383 | 96 | 6 | 57 | 409 | 8 | 386 | 2.01e-164 | 467 |
| MS.gene027219.t1 | MTR_8g027395 | 63.472 | 386 | 104 | 5 | 56 | 411 | 19 | 397 | 3.02e-163 | 464 |
| MS.gene027219.t1 | MTR_4g045707 | 61.942 | 381 | 114 | 3 | 59 | 411 | 11 | 388 | 2.17e-158 | 452 |
| MS.gene027219.t1 | MTR_8g461160 | 62.141 | 383 | 114 | 5 | 58 | 409 | 10 | 392 | 8.82e-157 | 448 |
| MS.gene027219.t1 | MTR_3g101180 | 60.000 | 390 | 119 | 5 | 57 | 409 | 9 | 398 | 3.06e-154 | 442 |
| MS.gene027219.t1 | MTR_7g451890 | 57.662 | 385 | 132 | 2 | 58 | 411 | 18 | 402 | 2.21e-149 | 429 |
| MS.gene027219.t1 | MTR_8g027420 | 59.635 | 384 | 111 | 5 | 56 | 411 | 8 | 375 | 5.45e-149 | 427 |
| MS.gene027219.t1 | MTR_7g047780 | 58.182 | 385 | 130 | 2 | 58 | 411 | 18 | 402 | 1.27e-148 | 427 |
| MS.gene027219.t1 | MTR_2g046030 | 59.424 | 382 | 121 | 5 | 58 | 409 | 9 | 386 | 3.53e-148 | 426 |
| MS.gene027219.t1 | MTR_7g050810 | 57.403 | 385 | 133 | 2 | 58 | 411 | 20 | 404 | 9.35e-148 | 425 |
| MS.gene027219.t1 | MTR_4g088525 | 60.929 | 366 | 110 | 3 | 73 | 410 | 8 | 368 | 3.37e-147 | 422 |
| MS.gene027219.t1 | MTR_3g048000 | 57.214 | 402 | 121 | 6 | 37 | 409 | 11 | 390 | 4.41e-147 | 423 |
| MS.gene027219.t1 | MTR_7g050750 | 57.143 | 385 | 134 | 2 | 58 | 411 | 12 | 396 | 4.85e-147 | 423 |
| MS.gene027219.t1 | MTR_2g045980 | 59.424 | 382 | 121 | 5 | 58 | 409 | 9 | 386 | 1.73e-146 | 421 |
| MS.gene027219.t1 | MTR_3g101130 | 57.106 | 387 | 131 | 5 | 55 | 411 | 8 | 389 | 3.23e-144 | 416 |
| MS.gene027219.t1 | MTR_4g088535 | 58.839 | 379 | 107 | 5 | 56 | 406 | 9 | 366 | 5.44e-138 | 400 |
| MS.gene027219.t1 | MTR_3g100995 | 71.875 | 256 | 70 | 1 | 156 | 411 | 11 | 264 | 4.41e-135 | 388 |
| MS.gene027219.t1 | MTR_3g015620 | 56.683 | 404 | 115 | 7 | 40 | 409 | 1 | 378 | 2.25e-132 | 385 |
| MS.gene027219.t1 | MTR_3g018747 | 67.954 | 259 | 68 | 2 | 152 | 409 | 9 | 253 | 1.06e-122 | 356 |
| MS.gene027219.t1 | MTR_3g101200 | 54.857 | 350 | 144 | 5 | 70 | 409 | 45 | 390 | 7.52e-119 | 351 |
| MS.gene027219.t1 | MTR_3g102920 | 52.567 | 409 | 121 | 10 | 38 | 409 | 36 | 408 | 1.44e-118 | 351 |
| MS.gene027219.t1 | MTR_3g101190 | 50.546 | 366 | 89 | 5 | 76 | 411 | 9 | 312 | 4.28e-110 | 326 |
| MS.gene027219.t1 | MTR_3g015760 | 63.806 | 268 | 92 | 3 | 144 | 409 | 15 | 279 | 5.03e-103 | 307 |
| MS.gene027219.t1 | MTR_3g100010 | 51.572 | 318 | 78 | 3 | 77 | 333 | 38 | 340 | 6.13e-94 | 286 |
| MS.gene027219.t1 | MTR_3g111160 | 69.082 | 207 | 62 | 2 | 206 | 411 | 15 | 220 | 2.52e-91 | 275 |
| MS.gene027219.t1 | MTR_3g101110 | 54.417 | 283 | 94 | 5 | 108 | 385 | 28 | 280 | 1.19e-88 | 270 |
| MS.gene027219.t1 | MTR_7g050830 | 47.573 | 309 | 103 | 3 | 60 | 320 | 22 | 319 | 5.20e-87 | 268 |
| MS.gene027219.t1 | MTR_3g100520 | 61.086 | 221 | 72 | 3 | 193 | 411 | 1 | 209 | 8.00e-87 | 263 |
| MS.gene027219.t1 | MTR_2g046410 | 66.010 | 203 | 62 | 3 | 212 | 409 | 147 | 347 | 5.35e-84 | 261 |
| MS.gene027219.t1 | MTR_3g099970 | 64.796 | 196 | 52 | 2 | 152 | 347 | 20 | 198 | 1.01e-82 | 252 |
| MS.gene027219.t1 | MTR_3g101020 | 63.441 | 186 | 42 | 1 | 226 | 411 | 1 | 160 | 2.67e-76 | 234 |
| MS.gene027219.t1 | MTR_3g114310 | 38.287 | 397 | 195 | 11 | 57 | 411 | 22 | 410 | 5.32e-71 | 229 |
| MS.gene027219.t1 | MTR_3g101150 | 70.064 | 157 | 42 | 2 | 258 | 409 | 1 | 157 | 7.19e-71 | 220 |
| MS.gene027219.t1 | MTR_3g102870 | 61.783 | 157 | 58 | 1 | 215 | 369 | 1 | 157 | 1.39e-60 | 194 |
| MS.gene027219.t1 | MTR_3g111150 | 49.390 | 164 | 57 | 3 | 57 | 206 | 2 | 153 | 4.92e-38 | 135 |
| MS.gene027219.t1 | MTR_3g100990 | 51.181 | 127 | 32 | 2 | 58 | 156 | 9 | 133 | 3.22e-25 | 107 |
| MS.gene027219.t1 | MTR_3g101140 | 47.154 | 123 | 48 | 3 | 291 | 411 | 9 | 116 | 1.56e-21 | 89.7 |
| MS.gene027219.t1 | MTR_4g093550 | 61.039 | 77 | 28 | 1 | 58 | 134 | 10 | 84 | 2.80e-20 | 85.5 |
| MS.gene027219.t1 | MTR_6g046890 | 75.000 | 60 | 15 | 0 | 72 | 131 | 15 | 74 | 8.96e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027219.t1 | AT1G47710 | 49.476 | 382 | 161 | 5 | 59 | 409 | 10 | 390 | 4.81e-124 | 364 |
| MS.gene027219.t1 | AT1G47710 | 49.476 | 382 | 161 | 5 | 59 | 409 | 37 | 417 | 2.47e-123 | 363 |
| MS.gene027219.t1 | AT3G45220 | 44.330 | 388 | 173 | 6 | 58 | 408 | 9 | 390 | 2.87e-107 | 322 |
| MS.gene027219.t1 | AT2G25240 | 46.174 | 379 | 171 | 9 | 58 | 408 | 9 | 382 | 1.72e-105 | 317 |
| MS.gene027219.t1 | AT2G26390 | 44.503 | 382 | 177 | 7 | 58 | 408 | 9 | 386 | 1.39e-102 | 310 |
| MS.gene027219.t1 | AT1G62170 | 38.315 | 368 | 171 | 4 | 77 | 410 | 88 | 433 | 4.23e-78 | 248 |
| MS.gene027219.t1 | AT1G64030 | 39.740 | 385 | 176 | 7 | 58 | 408 | 9 | 371 | 2.05e-77 | 245 |
| MS.gene027219.t1 | AT2G14540 | 40.365 | 384 | 173 | 8 | 58 | 408 | 37 | 397 | 9.25e-76 | 241 |
| MS.gene027219.t1 | AT1G62170 | 35.162 | 401 | 171 | 5 | 77 | 410 | 88 | 466 | 3.74e-71 | 231 |
| MS.gene027219.t1 | AT2G35580 | 38.503 | 374 | 172 | 8 | 73 | 408 | 18 | 371 | 6.87e-71 | 228 |
| MS.gene027219.t1 | AT1G64010 | 44.240 | 217 | 98 | 4 | 193 | 408 | 1 | 195 | 1.71e-56 | 184 |
| MS.gene027219.t1 | AT1G64010 | 44.554 | 202 | 89 | 4 | 208 | 408 | 2 | 181 | 9.86e-51 | 169 |
| MS.gene027219.t1 | AT1G63280 | 50.435 | 115 | 53 | 2 | 152 | 264 | 8 | 120 | 7.21e-31 | 115 |
| MS.gene027219.t1 | AT1G62160 | 37.158 | 183 | 91 | 5 | 230 | 410 | 60 | 220 | 1.10e-30 | 117 |
| MS.gene027219.t1 | AT1G51330 | 47.748 | 111 | 55 | 2 | 151 | 258 | 30 | 140 | 1.40e-22 | 94.7 |
Find 86 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGACTTGTGGAATATTT+TGG | 0.106119 | 3.4:-45988571 | None:intergenic |
| TGACCAATGAAGTGAATTTA+TGG | 0.210594 | 3.4:+45988010 | MS.gene027219:CDS |
| TGCGGTGGCCGCAGCAGCTT+TGG | 0.246526 | 3.4:-45988616 | None:intergenic |
| TTGTCTTCGCCTTGCTTATA+AGG | 0.248930 | 3.4:-45988279 | None:intergenic |
| CTTGTCTTGATAAGATTCTT+TGG | 0.269178 | 3.4:-45987534 | None:intergenic |
| ATCGATTTGGATATTGCTTA+TGG | 0.285955 | 3.4:-45987435 | None:intergenic |
| TAATGGAGGTTTGACTAAAA+TGG | 0.312110 | 3.4:+45988515 | MS.gene027219:CDS |
| GTTGAGTTGATCGGTGGATT+TGG | 0.319346 | 3.4:-45987657 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.323594 | 3.4:+45988415 | MS.gene027219:CDS |
| GCCAACTTTGCTTGAGAAGC+TGG | 0.324647 | 3.4:+45988350 | MS.gene027219:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.344851 | 3.4:+45988324 | MS.gene027219:CDS |
| AGCCCATAAATTCACTTCAT+TGG | 0.350524 | 3.4:-45988013 | None:intergenic |
| GCTAATGCGCTGTACTATAA+AGG | 0.369123 | 3.4:+45988111 | MS.gene027219:CDS |
| TTCTTTGGAGAAAAGATGTT+TGG | 0.376879 | 3.4:-45987519 | None:intergenic |
| ACCGGAACTATCGTCTTTGT+TGG | 0.381672 | 3.4:+45988729 | MS.gene027219:CDS |
| ATTCAAAAGGTGAAAATCAT+AGG | 0.391490 | 3.4:-45988172 | None:intergenic |
| ATCTTATCAAGACAAGAATA+TGG | 0.421750 | 3.4:+45987541 | MS.gene027219:CDS |
| AACTATCGTCTTTGTTGGGC+AGG | 0.426929 | 3.4:+45988734 | MS.gene027219:CDS |
| ATTAAAGAACTTCTTCCTCT+AGG | 0.427888 | 3.4:+45988057 | MS.gene027219:CDS |
| GCTACAAAGTTTATGTCTGT+TGG | 0.432282 | 3.4:-45988669 | None:intergenic |
| GCCAGCTTCTCAAGCAAAGT+TGG | 0.435917 | 3.4:-45988351 | None:intergenic |
| TTTGAATGGAAACTCAGTTA+AGG | 0.440673 | 3.4:+45988188 | MS.gene027219:CDS |
| TCTCTGATCATAAATAAGAA+TGG | 0.440676 | 3.4:-45988699 | None:intergenic |
| TAACTGAGTTTCCATTCAAA+AGG | 0.441115 | 3.4:-45988185 | None:intergenic |
| TTAAAGAACTTCTTCCTCTA+GGG | 0.444956 | 3.4:+45988058 | MS.gene027219:CDS |
| CTCTGATCATAAATAAGAAT+GGG | 0.447141 | 3.4:-45988698 | None:intergenic |
| CAAGCTTCCTCTTGATAAAG+TGG | 0.447424 | 3.4:+45988398 | MS.gene027219:CDS |
| GATGTTGAGTGGGATCGATT+TGG | 0.447564 | 3.4:-45987448 | None:intergenic |
| AAAGCTGCTGCGGCCACCGC+AGG | 0.449035 | 3.4:+45988618 | MS.gene027219:CDS |
| CCGGAACTATCGTCTTTGTT+GGG | 0.455085 | 3.4:+45988730 | MS.gene027219:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.4:+45988591 | MS.gene027219:CDS |
| TCTGATATGTTAAAAGAGCT+TGG | 0.457367 | 3.4:+45988474 | MS.gene027219:CDS |
| CAGGTGCTCAATCCTCTGGC+TGG | 0.460058 | 3.4:+45988753 | MS.gene027219:CDS |
| TGGGCAGGTGCTCAATCCTC+TGG | 0.471464 | 3.4:+45988749 | MS.gene027219:CDS |
| ATCATCGCTGCTGGCTCCGA+GGG | 0.472440 | 3.4:+45987599 | MS.gene027219:CDS |
| CCCAACAAAGACGATAGTTC+CGG | 0.482385 | 3.4:-45988730 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.486946 | 3.4:+45988325 | MS.gene027219:CDS |
| GTGCTAAGCATCATCGCTGC+TGG | 0.494658 | 3.4:+45987590 | MS.gene027219:CDS |
| TTGAGAAGTTGTTGTTGTGT+GGG | 0.494908 | 3.4:-45987623 | None:intergenic |
| GACCAATGAAGTGAATTTAT+GGG | 0.495263 | 3.4:+45988011 | MS.gene027219:CDS |
| GTTGATCGGTGGATTTGGAT+TGG | 0.496620 | 3.4:-45987652 | None:intergenic |
| CTTCGCCTTGCTTATAAGGA+AGG | 0.497710 | 3.4:-45988275 | None:intergenic |
| ATATTGCTTATGGTTCTCTT+CGG | 0.500550 | 3.4:-45987425 | None:intergenic |
| TTACTTCAATGAAAGACTTG+TGG | 0.504558 | 3.4:-45988581 | None:intergenic |
| TTGTTGTTGTGTGGGGCCCT+CGG | 0.506763 | 3.4:-45987615 | None:intergenic |
| GGAAACGTTGCTATGGTTGT+TGG | 0.515044 | 3.4:-45987486 | None:intergenic |
| GTTGAGAAGTTGTTGTTGTG+TGG | 0.516014 | 3.4:-45987624 | None:intergenic |
| TCAAATGAAATATTCAACCT+TGG | 0.524127 | 3.4:-45988441 | None:intergenic |
| AAAGATGTTTGGCGATGGTG+AGG | 0.524270 | 3.4:-45987508 | None:intergenic |
| AGCACAACTTGTAGTGAAAG+TGG | 0.525473 | 3.4:-45987572 | None:intergenic |
| CTTGGCCTTCCTTATAAGCA+AGG | 0.532609 | 3.4:+45988270 | MS.gene027219:CDS |
| CATCATCGCTGCTGGCTCCG+AGG | 0.533411 | 3.4:+45987598 | MS.gene027219:CDS |
| TAGGTGACTTTAGGATTCCA+AGG | 0.533810 | 3.4:+45988424 | MS.gene027219:CDS |
| GATCGGTGGATTTGGATTGG+AGG | 0.535140 | 3.4:-45987649 | None:intergenic |
| AATGACGGAGACGAGGATAG+AGG | 0.536198 | 3.4:-45987687 | None:intergenic |
| GGAGACGAGGATAGAGGCGA+AGG | 0.536431 | 3.4:-45987681 | None:intergenic |
| ATGATCAGAGAAGATTTGAC+CGG | 0.538023 | 3.4:+45988711 | MS.gene027219:CDS |
| CGCTGTACTATAAAGGAGAG+TGG | 0.541667 | 3.4:+45988118 | MS.gene027219:CDS |
| GAAGAAGCAGAGAACAACTT+TGG | 0.542901 | 3.4:-45987351 | None:intergenic |
| AATGAAGTGAATTTATGGGC+TGG | 0.543546 | 3.4:+45988015 | MS.gene027219:CDS |
| GTCAAACCTCCATTAGTGAA+AGG | 0.554917 | 3.4:-45988507 | None:intergenic |
| CCTACTTCCACTTTATCAAG+AGG | 0.564451 | 3.4:-45988405 | None:intergenic |
| GAGAAGCTGTTGATGTTGAG+TGG | 0.565808 | 3.4:-45987459 | None:intergenic |
| CCTCTTGATAAAGTGGAAGT+AGG | 0.566916 | 3.4:+45988405 | MS.gene027219:CDS |
| TTCTGTCGATTTCAAGAACA+AGG | 0.572001 | 3.4:+45987834 | MS.gene027219:CDS |
| GTCTCCGTCATTCTACAAAA+CGG | 0.572969 | 3.4:+45987698 | MS.gene027219:CDS |
| TGAGAAGTTGTTGTTGTGTG+GGG | 0.577961 | 3.4:-45987622 | None:intergenic |
| AGAAGGCACCAAAGCTGCTG+CGG | 0.579858 | 3.4:+45988608 | MS.gene027219:CDS |
| TATGTCTGTTGGAAGACTCA+AGG | 0.582044 | 3.4:-45988658 | None:intergenic |
| TTTGTAGAATGACGGAGACG+AGG | 0.590002 | 3.4:-45987694 | None:intergenic |
| AAGATGTTTGGCGATGGTGA+GGG | 0.596429 | 3.4:-45987507 | None:intergenic |
| GCAGAGAACAACTTTGGCAA+TGG | 0.599168 | 3.4:-45987345 | None:intergenic |
| GGCGAAGGAGTTGAGTTGAT+CGG | 0.602516 | 3.4:-45987666 | None:intergenic |
| TGGTGAGGGAAACGTTGCTA+TGG | 0.613033 | 3.4:-45987493 | None:intergenic |
| AGAACTTCTTCCTCTAGGGT+CGG | 0.613652 | 3.4:+45988062 | MS.gene027219:CDS |
| TGATCATAAATAAGAATGGG+TGG | 0.618025 | 3.4:-45988695 | None:intergenic |
| CTTCTTCGTGCTCAACATCG+TGG | 0.619017 | 3.4:+45987367 | MS.gene027219:CDS |
| AGAAGCTGTTGATGTTGAGT+GGG | 0.635167 | 3.4:-45987458 | None:intergenic |
| GCCACCGCAGGTTTACTATG+TGG | 0.635990 | 3.4:+45988630 | MS.gene027219:CDS |
| GGAGAAAAGATGTTTGGCGA+TGG | 0.656877 | 3.4:-45987513 | None:intergenic |
| CACTAAGATCATCCAGCCAG+AGG | 0.659349 | 3.4:-45988765 | None:intergenic |
| TCCACATAGTAAACCTGCGG+TGG | 0.662303 | 3.4:-45988631 | None:intergenic |
| GAAGGAGTTGAGTTGATCGG+TGG | 0.668064 | 3.4:-45987663 | None:intergenic |
| TATGTTAAAAGAGCTTGGCG+TGG | 0.695535 | 3.4:+45988479 | MS.gene027219:CDS |
| GCTTCCACATAGTAAACCTG+CGG | 0.706349 | 3.4:-45988634 | None:intergenic |
| AAGTTGTCGACCGACCCTAG+AGG | 0.749625 | 3.4:-45988072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTAAATTTTGATA+TGG | + | chr3.4:45987969-45987988 | MS.gene027219:intron | 10.0% |
| !! | TACAAAAATTTAACAAAATC+AGG | - | chr3.4:45987908-45987927 | None:intergenic | 15.0% |
| !!! | AAATTTTGATATGGTTTGAA+AGG | + | chr3.4:45987978-45987997 | MS.gene027219:intron | 20.0% |
| ! | ATCTTATCAAGACAAGAATA+TGG | + | chr3.4:45987541-45987560 | MS.gene027219:CDS | 25.0% |
| ! | ATTCAAAAGGTGAAAATCAT+AGG | - | chr3.4:45988175-45988194 | None:intergenic | 25.0% |
| ! | CTCTGATCATAAATAAGAAT+GGG | - | chr3.4:45988701-45988720 | None:intergenic | 25.0% |
| ! | TCAAATGAAATATTCAACCT+TGG | - | chr3.4:45988444-45988463 | None:intergenic | 25.0% |
| ! | TCTCTGATCATAAATAAGAA+TGG | - | chr3.4:45988702-45988721 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:45988591-45988610 | MS.gene027219:CDS | 25.0% |
| !! | AAGTATTTTGTAGTGAAAAG+AGG | - | chr3.4:45987877-45987896 | None:intergenic | 25.0% |
| !! | AGTATTTTGTAGTGAAAAGA+GGG | - | chr3.4:45987876-45987895 | None:intergenic | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:45988174-45988193 | MS.gene027219:CDS | 25.0% |
| !!! | GAATGATAATTTTGATGCTT+CGG | + | chr3.4:45988140-45988159 | MS.gene027219:CDS | 25.0% |
| !!! | GGAATATTTTGGAAACATAA+AGG | - | chr3.4:45988563-45988582 | None:intergenic | 25.0% |
| !!! | TTCGATGATTTTAAAGTTCT+TGG | + | chr3.4:45988252-45988271 | MS.gene027219:CDS | 25.0% |
| ATATTGCTTATGGTTCTCTT+CGG | - | chr3.4:45987428-45987447 | None:intergenic | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+AGG | + | chr3.4:45988057-45988076 | MS.gene027219:CDS | 30.0% | |
| CTTGTCTTGATAAGATTCTT+TGG | - | chr3.4:45987537-45987556 | None:intergenic | 30.0% | |
| GACCAATGAAGTGAATTTAT+GGG | + | chr3.4:45988011-45988030 | MS.gene027219:CDS | 30.0% | |
| TAACTGAGTTTCCATTCAAA+AGG | - | chr3.4:45988188-45988207 | None:intergenic | 30.0% | |
| TAATGGAGGTTTGACTAAAA+TGG | + | chr3.4:45988515-45988534 | MS.gene027219:CDS | 30.0% | |
| TCTGATATGTTAAAAGAGCT+TGG | + | chr3.4:45988474-45988493 | MS.gene027219:CDS | 30.0% | |
| TGACCAATGAAGTGAATTTA+TGG | + | chr3.4:45988010-45988029 | MS.gene027219:CDS | 30.0% | |
| TGATCATAAATAAGAATGGG+TGG | - | chr3.4:45988698-45988717 | None:intergenic | 30.0% | |
| TTAAAGAACTTCTTCCTCTA+GGG | + | chr3.4:45988058-45988077 | MS.gene027219:CDS | 30.0% | |
| TTACTTCAATGAAAGACTTG+TGG | - | chr3.4:45988584-45988603 | None:intergenic | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.4:45988325-45988344 | MS.gene027219:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.4:45988324-45988343 | MS.gene027219:CDS | 30.0% | |
| TTTGAATGGAAACTCAGTTA+AGG | + | chr3.4:45988188-45988207 | MS.gene027219:CDS | 30.0% | |
| ! | GAAAAATGACTTTTGGATCA+AGG | - | chr3.4:45987406-45987425 | None:intergenic | 30.0% |
| ! | GAAAGACTTGTGGAATATTT+TGG | - | chr3.4:45988574-45988593 | None:intergenic | 30.0% |
| ! | GTATTTTGTAGTGAAAAGAG+GGG | - | chr3.4:45987875-45987894 | None:intergenic | 30.0% |
| ! | TTCTTTGGAGAAAAGATGTT+TGG | - | chr3.4:45987522-45987541 | None:intergenic | 30.0% |
| !! | ATCGATTTGGATATTGCTTA+TGG | - | chr3.4:45987438-45987457 | None:intergenic | 30.0% |
| !!! | ATCTTTTGTTGATGGTGTAT+GGG | + | chr3.4:45987741-45987760 | MS.gene027219:intron | 30.0% |
| !!! | TATCTTTTGTTGATGGTGTA+TGG | + | chr3.4:45987740-45987759 | MS.gene027219:intron | 30.0% |
| AATGAAGTGAATTTATGGGC+TGG | + | chr3.4:45988015-45988034 | MS.gene027219:CDS | 35.0% | |
| AGCCCATAAATTCACTTCAT+TGG | - | chr3.4:45988016-45988035 | None:intergenic | 35.0% | |
| ATGATCAGAGAAGATTTGAC+CGG | + | chr3.4:45988711-45988730 | MS.gene027219:CDS | 35.0% | |
| CCATCAACAAAAGATAGATG+AGG | - | chr3.4:45987736-45987755 | None:intergenic | 35.0% | |
| GAAAGAAGGTTGAAGAGAAA+GGG | - | chr3.4:45987776-45987795 | None:intergenic | 35.0% | |
| GCTACAAAGTTTATGTCTGT+TGG | - | chr3.4:45988672-45988691 | None:intergenic | 35.0% | |
| TCTCTTCAACCTTCTTTCAA+AGG | + | chr3.4:45987778-45987797 | MS.gene027219:intron | 35.0% | |
| TGAAAGAAGGTTGAAGAGAA+AGG | - | chr3.4:45987777-45987796 | None:intergenic | 35.0% | |
| ! | CCTCATCTATCTTTTGTTGA+TGG | + | chr3.4:45987733-45987752 | MS.gene027219:intron | 35.0% |
| ! | CTCTTCGGAAAAATGACTTT+TGG | - | chr3.4:45987413-45987432 | None:intergenic | 35.0% |
| ! | GACACAATTCCTTTGAAAGA+AGG | - | chr3.4:45987790-45987809 | None:intergenic | 35.0% |
| ! | GTTTTACCTTTCACTAATGG+AGG | + | chr3.4:45988501-45988520 | MS.gene027219:CDS | 35.0% |
| ! | TTGAGAAGTTGTTGTTGTGT+GGG | - | chr3.4:45987626-45987645 | None:intergenic | 35.0% |
| !! | GTGGTTTTACCTTTCACTAA+TGG | + | chr3.4:45988498-45988517 | MS.gene027219:CDS | 35.0% |
| !! | TTCTGTCGATTTCAAGAACA+AGG | + | chr3.4:45987834-45987853 | MS.gene027219:CDS | 35.0% |
| !!! | ACATAAAGGTTTTGACTCAC+AGG | - | chr3.4:45988549-45988568 | None:intergenic | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.4:45988415-45988434 | MS.gene027219:CDS | 40.0% | |
| AGAAGCTGTTGATGTTGAGT+GGG | - | chr3.4:45987461-45987480 | None:intergenic | 40.0% | |
| AGCACAACTTGTAGTGAAAG+TGG | - | chr3.4:45987575-45987594 | None:intergenic | 40.0% | |
| CAAGCTTCCTCTTGATAAAG+TGG | + | chr3.4:45988398-45988417 | MS.gene027219:CDS | 40.0% | |
| CCTACTTCCACTTTATCAAG+AGG | - | chr3.4:45988408-45988427 | None:intergenic | 40.0% | |
| CCTCTTGATAAAGTGGAAGT+AGG | + | chr3.4:45988405-45988424 | MS.gene027219:CDS | 40.0% | |
| GAAGAAGCAGAGAACAACTT+TGG | - | chr3.4:45987354-45987373 | None:intergenic | 40.0% | |
| GCTAATGCGCTGTACTATAA+AGG | + | chr3.4:45988111-45988130 | MS.gene027219:CDS | 40.0% | |
| GTCAAACCTCCATTAGTGAA+AGG | - | chr3.4:45988510-45988529 | None:intergenic | 40.0% | |
| GTCTCCGTCATTCTACAAAA+CGG | + | chr3.4:45987698-45987717 | MS.gene027219:CDS | 40.0% | |
| TATGTCTGTTGGAAGACTCA+AGG | - | chr3.4:45988661-45988680 | None:intergenic | 40.0% | |
| TATGTTAAAAGAGCTTGGCG+TGG | + | chr3.4:45988479-45988498 | MS.gene027219:CDS | 40.0% | |
| TTGTCTTCGCCTTGCTTATA+AGG | - | chr3.4:45988282-45988301 | None:intergenic | 40.0% | |
| ! | AGCACCGTTTTGTAGAATGA+CGG | - | chr3.4:45987705-45987724 | None:intergenic | 40.0% |
| ! | GTTGAGAAGTTGTTGTTGTG+TGG | - | chr3.4:45987627-45987646 | None:intergenic | 40.0% |
| ! | TGAGAAGTTGTTGTTGTGTG+GGG | - | chr3.4:45987625-45987644 | None:intergenic | 40.0% |
| !! | TAGGTGACTTTAGGATTCCA+AGG | + | chr3.4:45988424-45988443 | MS.gene027219:CDS | 40.0% |
| !!! | TTTTGTTGATGGTGTATGGG+TGG | + | chr3.4:45987744-45987763 | MS.gene027219:intron | 40.0% |
| AAAGATGTTTGGCGATGGTG+AGG | - | chr3.4:45987511-45987530 | None:intergenic | 45.0% | |
| AACTATCGTCTTTGTTGGGC+AGG | + | chr3.4:45988734-45988753 | MS.gene027219:CDS | 45.0% | |
| AAGATGTTTGGCGATGGTGA+GGG | - | chr3.4:45987510-45987529 | None:intergenic | 45.0% | |
| ACCGGAACTATCGTCTTTGT+TGG | + | chr3.4:45988729-45988748 | MS.gene027219:CDS | 45.0% | |
| CCCAACAAAGACGATAGTTC+CGG | - | chr3.4:45988733-45988752 | None:intergenic | 45.0% | |
| CCGGAACTATCGTCTTTGTT+GGG | + | chr3.4:45988730-45988749 | MS.gene027219:CDS | 45.0% | |
| CGCTGTACTATAAAGGAGAG+TGG | + | chr3.4:45988118-45988137 | MS.gene027219:CDS | 45.0% | |
| CTTCGCCTTGCTTATAAGGA+AGG | - | chr3.4:45988278-45988297 | None:intergenic | 45.0% | |
| GAGAAGCTGTTGATGTTGAG+TGG | - | chr3.4:45987462-45987481 | None:intergenic | 45.0% | |
| GATGTTGAGTGGGATCGATT+TGG | - | chr3.4:45987451-45987470 | None:intergenic | 45.0% | |
| GCAGAGAACAACTTTGGCAA+TGG | - | chr3.4:45987348-45987367 | None:intergenic | 45.0% | |
| GCTTCCACATAGTAAACCTG+CGG | - | chr3.4:45988637-45988656 | None:intergenic | 45.0% | |
| GGAAACGTTGCTATGGTTGT+TGG | - | chr3.4:45987489-45987508 | None:intergenic | 45.0% | |
| GGAGAAAAGATGTTTGGCGA+TGG | - | chr3.4:45987516-45987535 | None:intergenic | 45.0% | |
| ! | CTTGGCCTTCCTTATAAGCA+AGG | + | chr3.4:45988270-45988289 | MS.gene027219:CDS | 45.0% |
| ! | GTTGATCGGTGGATTTGGAT+TGG | - | chr3.4:45987655-45987674 | None:intergenic | 45.0% |
| ! | TTTGTAGAATGACGGAGACG+AGG | - | chr3.4:45987697-45987716 | None:intergenic | 45.0% |
| !! | AGAACTTCTTCCTCTAGGGT+CGG | + | chr3.4:45988062-45988081 | MS.gene027219:CDS | 45.0% |
| !! | GTTGAGTTGATCGGTGGATT+TGG | - | chr3.4:45987660-45987679 | None:intergenic | 45.0% |
| AAAAGATAGATGAGGCCCGC+GGG | - | chr3.4:45987728-45987747 | None:intergenic | 50.0% | |
| CAAAAGATAGATGAGGCCCG+CGG | - | chr3.4:45987729-45987748 | None:intergenic | 50.0% | |
| CTTCTTCGTGCTCAACATCG+TGG | + | chr3.4:45987367-45987386 | MS.gene027219:CDS | 50.0% | |
| GCCAACTTTGCTTGAGAAGC+TGG | + | chr3.4:45988350-45988369 | MS.gene027219:CDS | 50.0% | |
| GCCAGCTTCTCAAGCAAAGT+TGG | - | chr3.4:45988354-45988373 | None:intergenic | 50.0% | |
| TCCACATAGTAAACCTGCGG+TGG | - | chr3.4:45988634-45988653 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACGTTGCTA+TGG | - | chr3.4:45987496-45987515 | None:intergenic | 50.0% | |
| ! | AATGACGGAGACGAGGATAG+AGG | - | chr3.4:45987690-45987709 | None:intergenic | 50.0% |
| ! | GATCGGTGGATTTGGATTGG+AGG | - | chr3.4:45987652-45987671 | None:intergenic | 50.0% |
| ! | GGCAGCCCATCTTTTGCATT+TGG | - | chr3.4:45988333-45988352 | None:intergenic | 50.0% |
| !! | GAAGGAGTTGAGTTGATCGG+TGG | - | chr3.4:45987666-45987685 | None:intergenic | 50.0% |
| !! | GGCGAAGGAGTTGAGTTGAT+CGG | - | chr3.4:45987669-45987688 | None:intergenic | 50.0% |
| AAGTTGTCGACCGACCCTAG+AGG | - | chr3.4:45988075-45988094 | None:intergenic | 55.0% | |
| GCCACCGCAGGTTTACTATG+TGG | + | chr3.4:45988630-45988649 | MS.gene027219:CDS | 55.0% | |
| GTGCTAAGCATCATCGCTGC+TGG | + | chr3.4:45987590-45987609 | MS.gene027219:CDS | 55.0% | |
| TCTACAAAACGGTGCTCCCG+CGG | + | chr3.4:45987709-45987728 | MS.gene027219:intron | 55.0% | |
| ! | TTGTTGTTGTGTGGGGCCCT+CGG | - | chr3.4:45987618-45987637 | None:intergenic | 55.0% |
| !! | AGAAGGCACCAAAGCTGCTG+CGG | + | chr3.4:45988608-45988627 | MS.gene027219:CDS | 55.0% |
| CAGGTGCTCAATCCTCTGGC+TGG | + | chr3.4:45988753-45988772 | MS.gene027219:CDS | 60.0% | |
| CTACAAAACGGTGCTCCCGC+GGG | + | chr3.4:45987710-45987729 | MS.gene027219:intron | 60.0% | |
| GGAGACGAGGATAGAGGCGA+AGG | - | chr3.4:45987684-45987703 | None:intergenic | 60.0% | |
| TGGGCAGGTGCTCAATCCTC+TGG | + | chr3.4:45988749-45988768 | MS.gene027219:CDS | 60.0% | |
| !! | ATCATCGCTGCTGGCTCCGA+GGG | + | chr3.4:45987599-45987618 | MS.gene027219:CDS | 60.0% |
| !! | CATCATCGCTGCTGGCTCCG+AGG | + | chr3.4:45987598-45987617 | MS.gene027219:CDS | 65.0% |
| AAAGCTGCTGCGGCCACCGC+AGG | + | chr3.4:45988618-45988637 | MS.gene027219:CDS | 70.0% | |
| TGCGGTGGCCGCAGCAGCTT+TGG | - | chr3.4:45988619-45988638 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 45987320 | 45988779 | 45987320 | ID=MS.gene027219 |
| chr3.4 | mRNA | 45987320 | 45988779 | 45987320 | ID=MS.gene027219.t1;Parent=MS.gene027219 |
| chr3.4 | exon | 45987320 | 45987719 | 45987320 | ID=MS.gene027219.t1.exon1;Parent=MS.gene027219.t1 |
| chr3.4 | CDS | 45987320 | 45987719 | 45987320 | ID=cds.MS.gene027219.t1;Parent=MS.gene027219.t1 |
| chr3.4 | exon | 45987800 | 45987855 | 45987800 | ID=MS.gene027219.t1.exon2;Parent=MS.gene027219.t1 |
| chr3.4 | CDS | 45987800 | 45987855 | 45987800 | ID=cds.MS.gene027219.t1;Parent=MS.gene027219.t1 |
| chr3.4 | exon | 45988000 | 45988779 | 45988000 | ID=MS.gene027219.t1.exon3;Parent=MS.gene027219.t1 |
| chr3.4 | CDS | 45988000 | 45988779 | 45988000 | ID=cds.MS.gene027219.t1;Parent=MS.gene027219.t1 |
| Gene Sequence |
| Protein sequence |
