Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027230.t1 | XP_003602973.1 | 75.2 | 322 | 80 | 0 | 47 | 368 | 67 | 388 | 1.30E-131 | 479.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027230.t1 | Q75H81 | 56.4 | 314 | 133 | 2 | 55 | 367 | 83 | 393 | 5.0e-95 | 349.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027230.t1 | G7J5Q8 | 75.2 | 322 | 80 | 0 | 47 | 368 | 67 | 388 | 9.7e-132 | 479.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027230 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene027230 | PPI |
| MS.gene065945 | MS.gene027230 | PPI |
| MS.gene027230 | MS.gene065944 | PPI |
| MS.gene027230 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027230.t1 | MTR_3g101010 | 75.155 | 322 | 80 | 0 | 47 | 368 | 67 | 388 | 7.94e-167 | 471 |
| MS.gene027230.t1 | MTR_3g018740 | 69.565 | 322 | 95 | 2 | 47 | 367 | 67 | 386 | 2.48e-155 | 442 |
| MS.gene027230.t1 | MTR_4g045707 | 68.966 | 319 | 95 | 2 | 51 | 368 | 72 | 387 | 1.26e-154 | 440 |
| MS.gene027230.t1 | MTR_3g101030 | 66.766 | 334 | 93 | 3 | 51 | 368 | 97 | 428 | 2.78e-153 | 439 |
| MS.gene027230.t1 | MTR_8g027395 | 65.421 | 321 | 107 | 1 | 47 | 367 | 79 | 395 | 4.34e-150 | 429 |
| MS.gene027230.t1 | MTR_4g088525 | 64.286 | 322 | 111 | 1 | 47 | 368 | 51 | 368 | 5.40e-146 | 418 |
| MS.gene027230.t1 | MTR_7g451890 | 64.907 | 322 | 111 | 1 | 48 | 367 | 79 | 400 | 6.02e-145 | 416 |
| MS.gene027230.t1 | MTR_2g046030 | 65.231 | 325 | 104 | 3 | 47 | 367 | 67 | 386 | 2.21e-144 | 414 |
| MS.gene027230.t1 | MTR_7g047780 | 64.907 | 322 | 111 | 1 | 48 | 367 | 79 | 400 | 8.25e-143 | 411 |
| MS.gene027230.t1 | MTR_2g045980 | 65.231 | 325 | 104 | 3 | 47 | 367 | 67 | 386 | 1.53e-142 | 410 |
| MS.gene027230.t1 | MTR_3g101180 | 63.415 | 328 | 112 | 2 | 48 | 367 | 71 | 398 | 3.29e-141 | 407 |
| MS.gene027230.t1 | MTR_7g050810 | 63.190 | 326 | 110 | 2 | 48 | 367 | 81 | 402 | 3.56e-141 | 407 |
| MS.gene027230.t1 | MTR_8g027420 | 62.617 | 321 | 105 | 2 | 47 | 367 | 68 | 373 | 1.19e-140 | 404 |
| MS.gene027230.t1 | MTR_3g101050 | 67.398 | 319 | 85 | 5 | 51 | 368 | 97 | 397 | 1.43e-139 | 402 |
| MS.gene027230.t1 | MTR_7g050750 | 63.777 | 323 | 113 | 2 | 48 | 367 | 73 | 394 | 3.98e-139 | 401 |
| MS.gene027230.t1 | MTR_8g461160 | 64.169 | 307 | 108 | 1 | 63 | 367 | 86 | 392 | 1.09e-138 | 400 |
| MS.gene027230.t1 | MTR_3g101130 | 57.182 | 362 | 139 | 5 | 8 | 367 | 40 | 387 | 1.44e-135 | 392 |
| MS.gene027230.t1 | MTR_3g048000 | 62.264 | 318 | 99 | 4 | 51 | 367 | 93 | 390 | 1.82e-135 | 392 |
| MS.gene027230.t1 | MTR_4g088535 | 61.859 | 312 | 99 | 2 | 53 | 364 | 75 | 366 | 2.88e-127 | 370 |
| MS.gene027230.t1 | MTR_3g100995 | 68.235 | 255 | 78 | 2 | 113 | 367 | 11 | 262 | 3.03e-124 | 358 |
| MS.gene027230.t1 | MTR_3g102920 | 57.276 | 323 | 100 | 4 | 47 | 367 | 122 | 408 | 1.04e-116 | 345 |
| MS.gene027230.t1 | MTR_3g101200 | 59.736 | 303 | 114 | 4 | 68 | 367 | 93 | 390 | 2.39e-116 | 343 |
| MS.gene027230.t1 | MTR_3g018747 | 67.308 | 260 | 69 | 3 | 109 | 367 | 9 | 253 | 1.61e-115 | 336 |
| MS.gene027230.t1 | MTR_3g015620 | 55.657 | 327 | 117 | 4 | 47 | 369 | 78 | 380 | 1.93e-107 | 320 |
| MS.gene027230.t1 | MTR_3g015760 | 58.007 | 281 | 114 | 2 | 90 | 369 | 4 | 281 | 1.01e-100 | 299 |
| MS.gene027230.t1 | MTR_3g101190 | 51.393 | 323 | 90 | 4 | 47 | 367 | 53 | 310 | 3.18e-100 | 299 |
| MS.gene027230.t1 | MTR_3g111160 | 69.378 | 209 | 61 | 2 | 161 | 368 | 13 | 219 | 8.97e-94 | 280 |
| MS.gene027230.t1 | MTR_2g046410 | 66.019 | 206 | 64 | 2 | 166 | 367 | 144 | 347 | 1.36e-89 | 273 |
| MS.gene027230.t1 | MTR_3g100520 | 62.443 | 221 | 68 | 3 | 150 | 368 | 1 | 208 | 2.82e-89 | 268 |
| MS.gene027230.t1 | MTR_7g050830 | 56.225 | 249 | 78 | 2 | 48 | 276 | 81 | 318 | 8.52e-89 | 271 |
| MS.gene027230.t1 | MTR_3g099970 | 66.837 | 196 | 48 | 2 | 109 | 304 | 20 | 198 | 2.71e-85 | 257 |
| MS.gene027230.t1 | MTR_3g101110 | 55.967 | 243 | 77 | 3 | 109 | 347 | 68 | 284 | 2.13e-81 | 250 |
| MS.gene027230.t1 | MTR_3g100010 | 50.929 | 269 | 84 | 2 | 53 | 288 | 85 | 338 | 2.94e-81 | 252 |
| MS.gene027230.t1 | MTR_3g114310 | 43.506 | 308 | 161 | 8 | 68 | 366 | 104 | 407 | 5.57e-72 | 230 |
| MS.gene027230.t1 | MTR_3g101020 | 57.297 | 185 | 52 | 2 | 183 | 367 | 1 | 158 | 6.07e-64 | 201 |
| MS.gene027230.t1 | MTR_3g102870 | 64.286 | 154 | 55 | 0 | 174 | 327 | 3 | 156 | 4.11e-63 | 199 |
| MS.gene027230.t1 | MTR_3g101150 | 61.635 | 159 | 57 | 1 | 215 | 369 | 1 | 159 | 2.58e-61 | 194 |
| MS.gene027230.t1 | MTR_3g111150 | 62.097 | 124 | 44 | 1 | 40 | 163 | 33 | 153 | 2.12e-44 | 151 |
| MS.gene027230.t1 | MTR_3g100990 | 67.213 | 61 | 20 | 0 | 53 | 113 | 73 | 133 | 3.07e-19 | 89.4 |
| MS.gene027230.t1 | MTR_3g101140 | 45.528 | 123 | 49 | 5 | 248 | 368 | 9 | 115 | 4.99e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027230.t1 | AT1G47710 | 53.605 | 319 | 146 | 2 | 51 | 367 | 72 | 390 | 2.01e-117 | 346 |
| MS.gene027230.t1 | AT1G47710 | 53.605 | 319 | 146 | 2 | 51 | 367 | 99 | 417 | 1.35e-116 | 345 |
| MS.gene027230.t1 | AT3G45220 | 45.070 | 355 | 176 | 5 | 25 | 366 | 42 | 390 | 5.24e-103 | 309 |
| MS.gene027230.t1 | AT2G25240 | 46.802 | 344 | 174 | 5 | 27 | 366 | 44 | 382 | 9.89e-102 | 306 |
| MS.gene027230.t1 | AT2G26390 | 46.726 | 336 | 163 | 6 | 42 | 366 | 56 | 386 | 1.85e-96 | 292 |
| MS.gene027230.t1 | AT2G14540 | 46.541 | 318 | 145 | 4 | 55 | 369 | 105 | 400 | 3.41e-83 | 259 |
| MS.gene027230.t1 | AT2G35580 | 42.724 | 323 | 161 | 5 | 48 | 366 | 69 | 371 | 1.26e-81 | 254 |
| MS.gene027230.t1 | AT1G62170 | 42.767 | 318 | 155 | 5 | 54 | 368 | 140 | 433 | 4.55e-80 | 252 |
| MS.gene027230.t1 | AT1G64030 | 41.049 | 324 | 164 | 4 | 48 | 366 | 70 | 371 | 2.16e-78 | 246 |
| MS.gene027230.t1 | AT1G62170 | 38.746 | 351 | 155 | 6 | 54 | 368 | 140 | 466 | 3.53e-73 | 235 |
| MS.gene027230.t1 | AT1G64010 | 44.954 | 218 | 96 | 4 | 150 | 366 | 1 | 195 | 1.14e-56 | 184 |
| MS.gene027230.t1 | AT1G64010 | 43.842 | 203 | 90 | 4 | 165 | 366 | 2 | 181 | 6.26e-49 | 163 |
| MS.gene027230.t1 | AT1G63280 | 57.391 | 115 | 45 | 2 | 109 | 221 | 8 | 120 | 3.46e-37 | 130 |
| MS.gene027230.t1 | AT1G51330 | 53.153 | 111 | 49 | 3 | 108 | 215 | 30 | 140 | 4.07e-28 | 109 |
| MS.gene027230.t1 | AT1G62160 | 38.614 | 202 | 96 | 4 | 172 | 368 | 42 | 220 | 4.45e-27 | 107 |
Find 73 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGACTTATGGAATATTT+TGG | 0.130117 | 3.4:-45863610 | None:intergenic |
| TTACTTCAATGAAAGACTTA+TGG | 0.244293 | 3.4:-45863620 | None:intergenic |
| TTTGAATGGCAGTTCAATTA+AGG | 0.256137 | 3.4:+45863227 | MS.gene027230:CDS |
| TTATCTTTGCCTTGCTTATA+AGG | 0.258198 | 3.4:-45863318 | None:intergenic |
| AGGCCGTAAGGAGGGTATTA+TGG | 0.311902 | 3.4:+45861619 | MS.gene027230:intron |
| AAGAAGGATCTGATGATGTT+TGG | 0.330981 | 3.4:+45860550 | MS.gene027230:CDS |
| AGCCCATGAATTCACTTCAT+TGG | 0.356578 | 3.4:-45863052 | None:intergenic |
| AAGTGAAGGTAGGTGACTTT+AGG | 0.367192 | 3.4:+45863454 | MS.gene027230:CDS |
| TGCATTAGCAAAGATGAGTT+TGG | 0.379041 | 3.4:-45863136 | None:intergenic |
| GTATTGTTGTAACTCAGATT+TGG | 0.381641 | 3.4:-45863415 | None:intergenic |
| AGAAGGATCTGATGATGTTT+GGG | 0.396194 | 3.4:+45860551 | MS.gene027230:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.403335 | 3.4:+45863363 | MS.gene027230:CDS |
| TGATGTTTGGGTCATCGAAT+TGG | 0.408479 | 3.4:+45860563 | MS.gene027230:CDS |
| AACAGAGAGGCGAGGTCCGC+CGG | 0.431661 | 3.4:-45862773 | None:intergenic |
| TGACCAATGAAGTGAATTCA+TGG | 0.438108 | 3.4:+45863049 | MS.gene027230:CDS |
| TGAAGGAAGGTTGAAGGGGA+AGG | 0.438255 | 3.4:-45862822 | None:intergenic |
| ATCGAATTGGGTGGAACTAT+AGG | 0.448055 | 3.4:+45860576 | MS.gene027230:CDS |
| GATGTTTGGGTCATCGAATT+GGG | 0.448886 | 3.4:+45860564 | MS.gene027230:CDS |
| AATAAACTGTTTCTTCTCAC+TGG | 0.450845 | 3.4:-45863262 | None:intergenic |
| CAAATGAAATATTGAACCTC+GGG | 0.451641 | 3.4:-45863479 | None:intergenic |
| GCTACAAAGTTTAGTGGAGT+TGG | 0.453108 | 3.4:-45863711 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.4:+45863630 | MS.gene027230:CDS |
| GAAGGAAGGTTGAAGGGGAA+GGG | 0.464022 | 3.4:-45862821 | None:intergenic |
| AGTAGACACAGTTTCTTTGA+AGG | 0.465284 | 3.4:-45862839 | None:intergenic |
| GGCAACTTCTCGAGCAAAGC+TGG | 0.466558 | 3.4:-45863390 | None:intergenic |
| TTTCTTCTCACTGGTCATGA+AGG | 0.474225 | 3.4:-45863253 | None:intergenic |
| TTTCTTTGAAGGAAGGTTGA+AGG | 0.474955 | 3.4:-45862828 | None:intergenic |
| GTAGCGAAGATACCAGTTGA+TGG | 0.475483 | 3.4:+45860525 | MS.gene027230:CDS |
| GAGAGGCGAGGTCCGCCGGC+AGG | 0.475974 | 3.4:-45862769 | None:intergenic |
| CTTTGCCTTGCTTATAAGGA+AGG | 0.477464 | 3.4:-45863314 | None:intergenic |
| CTCTGTTGTCAATAGTGTGT+GGG | 0.483035 | 3.4:+45862789 | MS.gene027230:CDS |
| TAATTGAACTGCCATTCAAA+AGG | 0.488222 | 3.4:-45863224 | None:intergenic |
| CACTTCATTGGTCACTTCGA+CGG | 0.493599 | 3.4:-45863040 | None:intergenic |
| AATCTGAGTTACAACAATAC+AGG | 0.501962 | 3.4:+45863418 | MS.gene027230:CDS |
| ATACCAGTTGATGGAAAAGA+AGG | 0.502490 | 3.4:+45860534 | MS.gene027230:CDS |
| TTCTTTGAAGGAAGGTTGAA+GGG | 0.503893 | 3.4:-45862827 | None:intergenic |
| CTCAAAGACGCTGCTCCTGC+CGG | 0.506010 | 3.4:+45862754 | MS.gene027230:CDS |
| TGGTCAGCTACAAAGTTTAG+TGG | 0.516176 | 3.4:-45863717 | None:intergenic |
| CTTGTCCTTCCTTATAAGCA+AGG | 0.519129 | 3.4:+45863309 | MS.gene027230:CDS |
| TTCTGTTGATTTCAAGAACA+AGG | 0.537281 | 3.4:+45862882 | MS.gene027230:CDS |
| AAGTTGTATTACAGCTGCAC+TGG | 0.539017 | 3.4:-45863670 | None:intergenic |
| TTCTTCTCACTGGTCATGAA+GGG | 0.539224 | 3.4:-45863252 | None:intergenic |
| GCTAATGCACTATACTTCAA+AGG | 0.540355 | 3.4:+45863150 | MS.gene027230:CDS |
| GACACAGTTTCTTTGAAGGA+AGG | 0.540665 | 3.4:-45862835 | None:intergenic |
| TCAAATGAAATATTGAACCT+CGG | 0.544795 | 3.4:-45863480 | None:intergenic |
| TCTCTTTATAAAGTGAAGGT+AGG | 0.546514 | 3.4:+45863444 | MS.gene027230:CDS |
| ACTCCATAATACCCTCCTTA+CGG | 0.549179 | 3.4:-45861622 | None:intergenic |
| TAATACAACTTGGCAGCTCT+AGG | 0.555961 | 3.4:+45863682 | MS.gene027230:CDS |
| TGTTGTAACTCAGATTTGGA+AGG | 0.569903 | 3.4:-45863411 | None:intergenic |
| GCTTTCTCTTTATAAAGTGA+AGG | 0.572970 | 3.4:+45863440 | MS.gene027230:CDS |
| TCTTTGAAGGAAGGTTGAAG+GGG | 0.577014 | 3.4:-45862826 | None:intergenic |
| GTCAGACCTCCGGGAGAGAG+AGG | 0.582799 | 3.4:-45863546 | None:intergenic |
| TTGTTATGCTATAGGCCGTA+AGG | 0.583448 | 3.4:+45861607 | MS.gene027230:intron |
| TGTTAAGATCACAAAGCAAG+AGG | 0.585908 | 3.4:-45863807 | None:intergenic |
| TCTGATATGTTGAAGCAACT+AGG | 0.595210 | 3.4:+45863513 | MS.gene027230:CDS |
| CATAAATGATGCCATCCAAG+AGG | 0.598843 | 3.4:+45860490 | None:intergenic |
| AGTGCAGCTGTAATACAACT+TGG | 0.599503 | 3.4:+45863672 | MS.gene027230:CDS |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.4:+45863157 | MS.gene027230:CDS |
| TCTCTGTTGTCAATAGTGTG+TGG | 0.609402 | 3.4:+45862788 | MS.gene027230:CDS |
| AAAGACGCTGCTCCTGCCGG+CGG | 0.609695 | 3.4:+45862757 | MS.gene027230:CDS |
| TATGTTGAAGCAACTAGGAG+TGG | 0.617743 | 3.4:+45863518 | MS.gene027230:CDS |
| ATAAATGATGCCATCCAAGA+GGG | 0.631598 | 3.4:+45860491 | None:intergenic |
| TTATGCTATAGGCCGTAAGG+AGG | 0.639835 | 3.4:+45861610 | MS.gene027230:intron |
| GTTTGGGTCATCGAATTGGG+TGG | 0.656449 | 3.4:+45860567 | MS.gene027230:CDS |
| TAGGTGACTTTAGGATCCCG+AGG | 0.661613 | 3.4:+45863463 | MS.gene027230:CDS |
| GACCAATGAAGTGAATTCAT+GGG | 0.663853 | 3.4:+45863050 | MS.gene027230:CDS |
| CGTCTTTGAGAATGACAGAG+AGG | 0.666512 | 3.4:-45862741 | None:intergenic |
| AAATGATGCCATCCAAGAGG+GGG | 0.668157 | 3.4:+45860493 | None:intergenic |
| CTTTGAGAATGACAGAGAGG+AGG | 0.672577 | 3.4:-45862738 | None:intergenic |
| TATGCTATAGGCCGTAAGGA+GGG | 0.677301 | 3.4:+45861611 | MS.gene027230:intron |
| TAAATGATGCCATCCAAGAG+GGG | 0.682668 | 3.4:+45860492 | None:intergenic |
| CTATTGACAACAGAGAGGCG+AGG | 0.762061 | 3.4:-45862781 | None:intergenic |
| ACACACTATTGACAACAGAG+AGG | 0.774043 | 3.4:-45862786 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAATATATTTA+TGG | - | chr3.4:45861735-45861754 | None:intergenic | 0.0% |
| !! | GTATTATGTATATAATTATT+TGG | - | chr3.4:45862109-45862128 | None:intergenic | 10.0% |
| !!! | AGAATAAAATTTTATACTAA+AGG | - | chr3.4:45861484-45861503 | None:intergenic | 10.0% |
| !! | ATAGTAACATAACAAATTAA+TGG | - | chr3.4:45861701-45861720 | None:intergenic | 15.0% |
| !! | CTCTAATCATAAATAAAAAT+GGG | - | chr3.4:45863743-45863762 | None:intergenic | 15.0% |
| !! | TCTCTAATCATAAATAAAAA+TGG | - | chr3.4:45863744-45863763 | None:intergenic | 15.0% |
| !!! | ATTGATTTGAAATTTTGATA+TGG | + | chr3.4:45863009-45863028 | MS.gene027230:intron | 15.0% |
| !!! | TTTGAATTGATTTCTTTTAT+CGG | - | chr3.4:45862277-45862296 | None:intergenic | 15.0% |
| !!! | TTTTGAATAAGGATATATTT+TGG | + | chr3.4:45861319-45861338 | MS.gene027230:intron | 15.0% |
| !! | AAGTAATCTAAAAACCAAAT+TGG | - | chr3.4:45860787-45860806 | None:intergenic | 20.0% |
| !! | AATATTCTAAATGCAAGTAT+TGG | - | chr3.4:45862425-45862444 | None:intergenic | 20.0% |
| !! | AGATTATTAGTAACATTGTA+AGG | - | chr3.4:45861238-45861257 | None:intergenic | 20.0% |
| !! | ATACATAATACTACTTATAG+AGG | + | chr3.4:45862118-45862137 | MS.gene027230:intron | 20.0% |
| !! | ATATTCTAAATGCAAGTATT+GGG | - | chr3.4:45862424-45862443 | None:intergenic | 20.0% |
| !! | CATTATTCCTAATATGAATT+GGG | + | chr3.4:45862633-45862652 | MS.gene027230:intron | 20.0% |
| !! | GAACAATAAAAAGAGAAATA+AGG | - | chr3.4:45861058-45861077 | None:intergenic | 20.0% |
| !! | TAATCATAAATAAAAATGGG+TGG | - | chr3.4:45863740-45863759 | None:intergenic | 20.0% |
| !! | TCTTCTTATTATGAAATTTG+AGG | + | chr3.4:45861501-45861520 | MS.gene027230:intron | 20.0% |
| !! | TTCTGTAAAATTCAAAAACA+AGG | + | chr3.4:45862468-45862487 | MS.gene027230:intron | 20.0% |
| !! | TTTCTACTATATGAGTTTAT+GGG | + | chr3.4:45862538-45862557 | MS.gene027230:intron | 20.0% |
| !!! | ACCTATTTTTCCTAATAAAA+AGG | + | chr3.4:45861919-45861938 | MS.gene027230:intron | 20.0% |
| !!! | ACCTTTTTATTAGGAAAAAT+AGG | - | chr3.4:45861923-45861942 | None:intergenic | 20.0% |
| !!! | ATTTTTCCTAATAAAAAGGT+AGG | + | chr3.4:45861923-45861942 | MS.gene027230:intron | 20.0% |
| !!! | GAAATTTTGATATGGTTTAA+AGG | + | chr3.4:45863017-45863036 | MS.gene027230:intron | 20.0% |
| !!! | TCAAAATAACTTTTCTTTGA+TGG | + | chr3.4:45860659-45860678 | MS.gene027230:intron | 20.0% |
| !!! | TGATTTATGTTCGTATTTTA+TGG | + | chr3.4:45861651-45861670 | MS.gene027230:CDS | 20.0% |
| ! | AAAAAATCCACATTTAACAC+CGG | + | chr3.4:45861814-45861833 | MS.gene027230:intron | 25.0% |
| ! | ACCTTTATAGAAGTGAATAT+TGG | + | chr3.4:45862573-45862592 | MS.gene027230:intron | 25.0% |
| ! | CATAAACTCATATAGTAGAA+AGG | - | chr3.4:45862539-45862558 | None:intergenic | 25.0% |
| ! | CTAATTTACATAAGCCAATT+TGG | + | chr3.4:45860770-45860789 | MS.gene027230:intron | 25.0% |
| ! | CTTTCTACTATATGAGTTTA+TGG | + | chr3.4:45862537-45862556 | MS.gene027230:intron | 25.0% |
| ! | GCATTATTCCTAATATGAAT+TGG | + | chr3.4:45862632-45862651 | MS.gene027230:intron | 25.0% |
| ! | TCAAATGAAATATTGAACCT+CGG | - | chr3.4:45863483-45863502 | None:intergenic | 25.0% |
| ! | TCCAATATTCACTTCTATAA+AGG | - | chr3.4:45862577-45862596 | None:intergenic | 25.0% |
| ! | TTACTTCAATGAAAGACTTA+TGG | - | chr3.4:45863623-45863642 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:45863630-45863649 | MS.gene027230:CDS | 25.0% |
| ! | TTTGGAAAAATGGATAATCA+GGG | + | chr3.4:45862661-45862680 | MS.gene027230:intron | 25.0% |
| !! | AAATAACTTTTCTTTGATGG+AGG | + | chr3.4:45860662-45860681 | MS.gene027230:intron | 25.0% |
| !! | AATAACTTTTCTTTGATGGA+GGG | + | chr3.4:45860663-45860682 | MS.gene027230:intron | 25.0% |
| !! | AATTGACTTATTCAAGCTTA+GGG | - | chr3.4:45862310-45862329 | None:intergenic | 25.0% |
| !! | ACACCTCTTTTACAAATAAA+CGG | - | chr3.4:45861881-45861900 | None:intergenic | 25.0% |
| !! | ATGATTAGAGAAGATTTTAC+TGG | + | chr3.4:45863753-45863772 | MS.gene027230:CDS | 25.0% |
| !! | ATTTGGAAGAAAAAAGTACA+TGG | - | chr3.4:45863355-45863374 | None:intergenic | 25.0% |
| !! | GAAAGACTTATGGAATATTT+TGG | - | chr3.4:45863613-45863632 | None:intergenic | 25.0% |
| !! | GAATTTGGTTTACATTAGTT+AGG | + | chr3.4:45862354-45862373 | MS.gene027230:intron | 25.0% |
| !! | GTAAATTAGCAAATGGTTTT+GGG | - | chr3.4:45860759-45860778 | None:intergenic | 25.0% |
| !! | GTCTTAAATCTCTAAAAAAC+AGG | + | chr3.4:45862030-45862049 | MS.gene027230:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:45863213-45863232 | MS.gene027230:CDS | 25.0% |
| !! | TATTCTAAATGCAAGTATTG+GGG | - | chr3.4:45862423-45862442 | None:intergenic | 25.0% |
| !! | TGAATTTTGTAGTGAAAAGA+GGG | - | chr3.4:45862924-45862943 | None:intergenic | 25.0% |
| !! | TGTAAATTAGCAAATGGTTT+TGG | - | chr3.4:45860760-45860779 | None:intergenic | 25.0% |
| !! | TTGAATTTTGTAGTGAAAAG+AGG | - | chr3.4:45862925-45862944 | None:intergenic | 25.0% |
| !!! | ATTTAAGACCTGTTTTTTAC+CGG | - | chr3.4:45862019-45862038 | None:intergenic | 25.0% |
| !!! | CCTATTTTTTAGCAAAAAAC+CGG | - | chr3.4:45861836-45861855 | None:intergenic | 25.0% |
| !!! | GGAATATTTTGGAAACATAA+AGG | - | chr3.4:45863602-45863621 | None:intergenic | 25.0% |
| !!! | GTGGAAGAAGTTTTTTAATA+AGG | - | chr3.4:45863095-45863114 | None:intergenic | 25.0% |
| AACCAATCCCAATTCATATT+AGG | - | chr3.4:45862643-45862662 | None:intergenic | 30.0% | |
| AATCTGAGTTACAACAATAC+AGG | + | chr3.4:45863418-45863437 | MS.gene027230:CDS | 30.0% | |
| ATGCAATCAACATTGAGAAT+AGG | - | chr3.4:45860893-45860912 | None:intergenic | 30.0% | |
| CAAATGAAATATTGAACCTC+GGG | - | chr3.4:45863482-45863501 | None:intergenic | 30.0% | |
| CATGTCAAATATTACCTACA+CGG | - | chr3.4:45860736-45860755 | None:intergenic | 30.0% | |
| CCTTTCAACTTATAGATCAT+TGG | + | chr3.4:45862160-45862179 | MS.gene027230:intron | 30.0% | |
| CTCTTATATGAAAGCGAATT+TGG | + | chr3.4:45862339-45862358 | MS.gene027230:intron | 30.0% | |
| GAAAATGACAAAATTGTGCA+AGG | - | chr3.4:45861165-45861184 | None:intergenic | 30.0% | |
| GCTTTCTCTTTATAAAGTGA+AGG | + | chr3.4:45863440-45863459 | MS.gene027230:CDS | 30.0% | |
| GGCTTATGTAAATTAGCAAA+TGG | - | chr3.4:45860766-45860785 | None:intergenic | 30.0% | |
| GTATTGTTGTAACTCAGATT+TGG | - | chr3.4:45863418-45863437 | None:intergenic | 30.0% | |
| GTTTGGAAAAATGGATAATC+AGG | + | chr3.4:45862660-45862679 | MS.gene027230:intron | 30.0% | |
| TAACCTAAAATGTGCAACTA+TGG | + | chr3.4:45861754-45861773 | MS.gene027230:intron | 30.0% | |
| TAATTGAACTGCCATTCAAA+AGG | - | chr3.4:45863227-45863246 | None:intergenic | 30.0% | |
| TCCTAATAAAAAGGTAGGAA+AGG | + | chr3.4:45861928-45861947 | MS.gene027230:intron | 30.0% | |
| TCTCTTTATAAAGTGAAGGT+AGG | + | chr3.4:45863444-45863463 | MS.gene027230:CDS | 30.0% | |
| TGGTTTACATTAGTTAGGTT+TGG | + | chr3.4:45862359-45862378 | MS.gene027230:intron | 30.0% | |
| TTAATGGTACAAACTGTTCA+AGG | - | chr3.4:45861685-45861704 | None:intergenic | 30.0% | |
| TTATCTTTGCCTTGCTTATA+AGG | - | chr3.4:45863321-45863340 | None:intergenic | 30.0% | |
| TTCCTAATATGAATTGGGAT+TGG | + | chr3.4:45862638-45862657 | MS.gene027230:intron | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.4:45863363-45863382 | MS.gene027230:CDS | 30.0% | |
| TTTGAATGGCAGTTCAATTA+AGG | + | chr3.4:45863227-45863246 | MS.gene027230:CDS | 30.0% | |
| ! | AATAAACTGTTTCTTCTCAC+TGG | - | chr3.4:45863265-45863284 | None:intergenic | 30.0% |
| ! | ACCTTTCCTACCTTTTTATT+AGG | - | chr3.4:45861932-45861951 | None:intergenic | 30.0% |
| ! | ATAACTTTTCTTTGATGGAG+GGG | + | chr3.4:45860664-45860683 | MS.gene027230:intron | 30.0% |
| ! | CACCTCTTTTACAAATAAAC+GGG | - | chr3.4:45861880-45861899 | None:intergenic | 30.0% |
| ! | CCAATGATCTATAAGTTGAA+AGG | - | chr3.4:45862163-45862182 | None:intergenic | 30.0% |
| ! | GAATTGACTTATTCAAGCTT+AGG | - | chr3.4:45862311-45862330 | None:intergenic | 30.0% |
| ! | TAGTAACATTGTAAGGCTTT+TGG | - | chr3.4:45861231-45861250 | None:intergenic | 30.0% |
| ! | TATTCTCAATGTTGATTGCA+TGG | + | chr3.4:45860892-45860911 | MS.gene027230:intron | 30.0% |
| !! | AATATGAATTGGGATTGGTT+TGG | + | chr3.4:45862643-45862662 | MS.gene027230:intron | 30.0% |
| !! | ATGCTTTTTAATGAAGCACT+TGG | + | chr3.4:45860698-45860717 | MS.gene027230:intron | 30.0% |
| !! | TTCTGTTGATTTCAAGAACA+AGG | + | chr3.4:45862882-45862901 | MS.gene027230:CDS | 30.0% |
| !!! | CCGGTTTTTTGCTAAAAAAT+AGG | + | chr3.4:45861833-45861852 | MS.gene027230:intron | 30.0% |
| !!! | TGCACAATTTTGTCATTTTC+TGG | + | chr3.4:45861165-45861184 | MS.gene027230:intron | 30.0% |
| !!! | TTTAAGACCTGTTTTTTACC+GGG | - | chr3.4:45862018-45862037 | None:intergenic | 30.0% |
| !!! | TTTATTTATTTTGTAGGCCC+TGG | + | chr3.4:45860836-45860855 | MS.gene027230:intron | 30.0% |
| AGAAAGATTGCATTATGTGC+AGG | + | chr3.4:45861395-45861414 | MS.gene027230:intron | 35.0% | |
| AGTAGACACAGTTTCTTTGA+AGG | - | chr3.4:45862842-45862861 | None:intergenic | 35.0% | |
| ATAAACCTAATCCTCTGACT+TGG | - | chr3.4:45860991-45861010 | None:intergenic | 35.0% | |
| ATATAACCCCGGTAAAAAAC+AGG | + | chr3.4:45862008-45862027 | MS.gene027230:intron | 35.0% | |
| CAACATTGAGAATAGGAACA+AGG | - | chr3.4:45860886-45860905 | None:intergenic | 35.0% | |
| CACCCGTTTATTTGTAAAAG+AGG | + | chr3.4:45861875-45861894 | MS.gene027230:intron | 35.0% | |
| CAGTGTGAATTTAGTGTTGT+AGG | + | chr3.4:45861582-45861601 | MS.gene027230:intron | 35.0% | |
| CATACAAACAGTGACACAAT+AGG | - | chr3.4:45861550-45861569 | None:intergenic | 35.0% | |
| CATATAGTAGAAAGGCTTCA+CGG | - | chr3.4:45862531-45862550 | None:intergenic | 35.0% | |
| GAACCTAACAAATGTTTCCA+GGG | - | chr3.4:45860856-45860875 | None:intergenic | 35.0% | |
| GACCAATGAAGTGAATTCAT+GGG | + | chr3.4:45863050-45863069 | MS.gene027230:CDS | 35.0% | |
| GCTAATGCACTATACTTCAA+AGG | + | chr3.4:45863150-45863169 | MS.gene027230:CDS | 35.0% | |
| TAATCGTCAACACATGATAC+TGG | - | chr3.4:45861083-45861102 | None:intergenic | 35.0% | |
| TATTCAAGCTTAGGGATGAA+AGG | - | chr3.4:45862302-45862321 | None:intergenic | 35.0% | |
| TCTGATATGTTGAAGCAACT+AGG | + | chr3.4:45863513-45863532 | MS.gene027230:CDS | 35.0% | |
| TGAACCTAACAAATGTTTCC+AGG | - | chr3.4:45860857-45860876 | None:intergenic | 35.0% | |
| TGACCAATGAAGTGAATTCA+TGG | + | chr3.4:45863049-45863068 | MS.gene027230:CDS | 35.0% | |
| TGCATTAGCAAAGATGAGTT+TGG | - | chr3.4:45863139-45863158 | None:intergenic | 35.0% | |
| TGTTGTAACTCAGATTTGGA+AGG | - | chr3.4:45863414-45863433 | None:intergenic | 35.0% | |
| TTCACGGACAATTCATATGT+TGG | - | chr3.4:45862515-45862534 | None:intergenic | 35.0% | |
| TTTCATTTGTCGTCTTTACC+AGG | + | chr3.4:45861114-45861133 | MS.gene027230:intron | 35.0% | |
| ! | AAAAATGGTTGACTCTGTTG+AGG | + | chr3.4:45863569-45863588 | MS.gene027230:CDS | 35.0% |
| ! | AAGAAGGATCTGATGATGTT+TGG | + | chr3.4:45860550-45860569 | MS.gene027230:CDS | 35.0% |
| ! | AGAAGGATCTGATGATGTTT+GGG | + | chr3.4:45860551-45860570 | MS.gene027230:CDS | 35.0% |
| ! | ATCAACAGGTGTTGTATGTT+TGG | - | chr3.4:45861990-45862009 | None:intergenic | 35.0% |
| ! | CAAAAAACCGGTGTTAAATG+TGG | - | chr3.4:45861824-45861843 | None:intergenic | 35.0% |
| ! | CTACCATAGTTGCACATTTT+AGG | - | chr3.4:45861760-45861779 | None:intergenic | 35.0% |
| ! | TTCTTTGAAGGAAGGTTGAA+GGG | - | chr3.4:45862830-45862849 | None:intergenic | 35.0% |
| ! | TTTCTTTGAAGGAAGGTTGA+AGG | - | chr3.4:45862831-45862850 | None:intergenic | 35.0% |
| !! | ATACCAGTTGATGGAAAAGA+AGG | + | chr3.4:45860534-45860553 | MS.gene027230:CDS | 35.0% |
| !! | GAGTTGATCAGATCAGTTTT+AGG | - | chr3.4:45862701-45862720 | None:intergenic | 35.0% |
| !! | TGTAGGTGTTGTTATGCTAT+AGG | + | chr3.4:45861599-45861618 | MS.gene027230:intron | 35.0% |
| !! | TTGGGATTGGTTTGGAAAAA+TGG | + | chr3.4:45862651-45862670 | MS.gene027230:intron | 35.0% |
| !!! | GATCAGTTTTAGGAATGTCA+AGG | - | chr3.4:45862691-45862710 | None:intergenic | 35.0% |
| !!! | TTAAGACCTGTTTTTTACCG+GGG | - | chr3.4:45862017-45862036 | None:intergenic | 35.0% |
| AACACCTGTTGATATAACCC+CGG | + | chr3.4:45861997-45862016 | MS.gene027230:intron | 40.0% | |
| AACGACAAGCAAGATGAGTA+GGG | - | chr3.4:45861015-45861034 | None:intergenic | 40.0% | |
| AAGTGAAGGTAGGTGACTTT+AGG | + | chr3.4:45863454-45863473 | MS.gene027230:CDS | 40.0% | |
| AAGTTGTATTACAGCTGCAC+TGG | - | chr3.4:45863673-45863692 | None:intergenic | 40.0% | |
| ACACACTATTGACAACAGAG+AGG | - | chr3.4:45862789-45862808 | None:intergenic | 40.0% | |
| ACAGTCTCGTCGTACATTAT+AGG | + | chr3.4:45861264-45861283 | MS.gene027230:intron | 40.0% | |
| ACTCCATAATACCCTCCTTA+CGG | - | chr3.4:45861625-45861644 | None:intergenic | 40.0% | |
| AGCCCATGAATTCACTTCAT+TGG | - | chr3.4:45863055-45863074 | None:intergenic | 40.0% | |
| AGTGCAGCTGTAATACAACT+TGG | + | chr3.4:45863672-45863691 | MS.gene027230:CDS | 40.0% | |
| ATCGAATTGGGTGGAACTAT+AGG | + | chr3.4:45860576-45860595 | MS.gene027230:CDS | 40.0% | |
| ATGACTCACTAGTGCAAATC+GGG | - | chr3.4:45862065-45862084 | None:intergenic | 40.0% | |
| CAAGAGGATCATCTTGTTCT+AGG | + | chr3.4:45861435-45861454 | MS.gene027230:intron | 40.0% | |
| CATGACTCACTAGTGCAAAT+CGG | - | chr3.4:45862066-45862085 | None:intergenic | 40.0% | |
| CTCTGTTGTCAATAGTGTGT+GGG | + | chr3.4:45862789-45862808 | MS.gene027230:CDS | 40.0% | |
| CTTGTCCTTCCTTATAAGCA+AGG | + | chr3.4:45863309-45863328 | MS.gene027230:CDS | 40.0% | |
| CTTTGCCTTGCTTATAAGGA+AGG | - | chr3.4:45863317-45863336 | None:intergenic | 40.0% | |
| GATGTTTGGGTCATCGAATT+GGG | + | chr3.4:45860564-45860583 | MS.gene027230:CDS | 40.0% | |
| GCTACAAAGTTTAGTGGAGT+TGG | - | chr3.4:45863714-45863733 | None:intergenic | 40.0% | |
| GGAACTTGACGACAATACTA+AGG | + | chr3.4:45861135-45861154 | MS.gene027230:intron | 40.0% | |
| TAATACAACTTGGCAGCTCT+AGG | + | chr3.4:45863682-45863701 | MS.gene027230:CDS | 40.0% | |
| TAGTATTGTCGTCAAGTTCC+TGG | - | chr3.4:45861135-45861154 | None:intergenic | 40.0% | |
| TATGTTGAAGCAACTAGGAG+TGG | + | chr3.4:45863518-45863537 | MS.gene027230:CDS | 40.0% | |
| TCTCTGTTGTCAATAGTGTG+TGG | + | chr3.4:45862788-45862807 | MS.gene027230:CDS | 40.0% | |
| TCTTGCTTGTCGTTGTTCAA+AGG | + | chr3.4:45861021-45861040 | MS.gene027230:intron | 40.0% | |
| TGATGTTTGGGTCATCGAAT+TGG | + | chr3.4:45860563-45860582 | MS.gene027230:CDS | 40.0% | |
| TGGCGAATATTGTGTTGAGT+TGG | - | chr3.4:45860971-45860990 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+AGG | + | chr3.4:45863069-45863088 | MS.gene027230:CDS | 40.0% | |
| TGGTCAGCTACAAAGTTTAG+TGG | - | chr3.4:45863720-45863739 | None:intergenic | 40.0% | |
| TTCTTCTCACTGGTCATGAA+GGG | - | chr3.4:45863255-45863274 | None:intergenic | 40.0% | |
| TTGTTATGCTATAGGCCGTA+AGG | + | chr3.4:45861607-45861626 | MS.gene027230:intron | 40.0% | |
| TTTACCGGGGTTATATCAAC+AGG | - | chr3.4:45862004-45862023 | None:intergenic | 40.0% | |
| TTTCTTCTCACTGGTCATGA+AGG | - | chr3.4:45863256-45863275 | None:intergenic | 40.0% | |
| ! | AGGAAAGGTTCTTTTCACAC+CGG | + | chr3.4:45861943-45861962 | MS.gene027230:intron | 40.0% |
| ! | GACACAGTTTCTTTGAAGGA+AGG | - | chr3.4:45862838-45862857 | None:intergenic | 40.0% |
| ! | GATCCTTCTTTTCCATCAAC+TGG | - | chr3.4:45860540-45860559 | None:intergenic | 40.0% |
| ! | GGTAGACCATCTTTTGCATT+TGG | - | chr3.4:45863372-45863391 | None:intergenic | 40.0% |
| ! | GGTCAATTTTTGTACCGTGT+AGG | + | chr3.4:45860719-45860738 | MS.gene027230:intron | 40.0% |
| ! | TCACTGCTAACAGACTTTTG+TGG | - | chr3.4:45863114-45863133 | None:intergenic | 40.0% |
| ! | TCTTTGAAGGAAGGTTGAAG+GGG | - | chr3.4:45862829-45862848 | None:intergenic | 40.0% |
| ! | TGTGTCACTGTTTGTATGTG+AGG | + | chr3.4:45861552-45861571 | MS.gene027230:intron | 40.0% |
| !! | AACCATTTTTGTCAGACCTC+CGG | - | chr3.4:45863559-45863578 | None:intergenic | 40.0% |
| !! | ACTGGAGCTATCGTTTTTAG+TGG | + | chr3.4:45863771-45863790 | MS.gene027230:CDS | 40.0% |
| !!! | AGCTATCGTTTTTAGTGGTC+GGG | + | chr3.4:45863776-45863795 | MS.gene027230:CDS | 40.0% |
| !!! | GAGCTATCGTTTTTAGTGGT+CGG | + | chr3.4:45863775-45863794 | MS.gene027230:CDS | 40.0% |
| AGGCCCTGGAAACATTTGTT+AGG | + | chr3.4:45860850-45860869 | MS.gene027230:intron | 45.0% | |
| ATTCGCCAAGTCAGAGGATT+AGG | + | chr3.4:45860983-45861002 | MS.gene027230:intron | 45.0% | |
| CAACGACAAGCAAGATGAGT+AGG | - | chr3.4:45861016-45861035 | None:intergenic | 45.0% | |
| CACAATATTCGCCAAGTCAG+AGG | + | chr3.4:45860977-45860996 | MS.gene027230:intron | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.4:45863157-45863176 | MS.gene027230:CDS | 45.0% | |
| CACTTCATTGGTCACTTCGA+CGG | - | chr3.4:45863043-45863062 | None:intergenic | 45.0% | |
| GTAGCGAAGATACCAGTTGA+TGG | + | chr3.4:45860525-45860544 | MS.gene027230:CDS | 45.0% | |
| TATGCTATAGGCCGTAAGGA+GGG | + | chr3.4:45861611-45861630 | MS.gene027230:intron | 45.0% | |
| TGACTCACTAGTGCAAATCG+GGG | - | chr3.4:45862064-45862083 | None:intergenic | 45.0% | |
| TGCATTATGTGCAGGTAGCT+TGG | + | chr3.4:45861403-45861422 | MS.gene027230:intron | 45.0% | |
| TTATGCTATAGGCCGTAAGG+AGG | + | chr3.4:45861610-45861629 | MS.gene027230:intron | 45.0% | |
| TTTCACACCGGACAGAAAAC+AGG | + | chr3.4:45861955-45861974 | MS.gene027230:intron | 45.0% | |
| ! | AACGACACCTGTTTTCTGTC+CGG | - | chr3.4:45861965-45861984 | None:intergenic | 45.0% |
| ! | CGTCTTTGAGAATGACAGAG+AGG | - | chr3.4:45862744-45862763 | None:intergenic | 45.0% |
| ! | CTTTGAGAATGACAGAGAGG+AGG | - | chr3.4:45862741-45862760 | None:intergenic | 45.0% |
| !! | ACCATTTTTGTCAGACCTCC+GGG | - | chr3.4:45863558-45863577 | None:intergenic | 45.0% |
| !! | TAAAAAAAAATAGTAAATTA+TGG | - | chr3.4:45861792-45861811 | None:intergenic | 5.0% |
| !! | TTATTCAAAAAATAATTTAA+AGG | - | chr3.4:45861309-45861328 | None:intergenic | 5.0% |
| !!! | ATCATATTTTAATTAATTTA+AGG | - | chr3.4:45860640-45860659 | None:intergenic | 5.0% |
| !!! | ATTTTATTTATTTATTTTGT+AGG | + | chr3.4:45860830-45860849 | MS.gene027230:intron | 5.0% |
| !!! | TTTAAATTATTTTTTGAATA+AGG | + | chr3.4:45861308-45861327 | MS.gene027230:intron | 5.0% |
| AGCTTGGAATGCGGAACAAG+AGG | + | chr3.4:45861419-45861438 | MS.gene027230:intron | 50.0% | |
| CTATTGACAACAGAGAGGCG+AGG | - | chr3.4:45862784-45862803 | None:intergenic | 50.0% | |
| GAAGGAAGGTTGAAGGGGAA+GGG | - | chr3.4:45862824-45862843 | None:intergenic | 50.0% | |
| GTTTGGGTCATCGAATTGGG+TGG | + | chr3.4:45860567-45860586 | MS.gene027230:CDS | 50.0% | |
| TCCCGGAGGTCTGACAAAAA+TGG | + | chr3.4:45863554-45863573 | MS.gene027230:CDS | 50.0% | |
| TGAAGGAAGGTTGAAGGGGA+AGG | - | chr3.4:45862825-45862844 | None:intergenic | 50.0% | |
| TGTGCAGGTAGCTTGGAATG+CGG | + | chr3.4:45861410-45861429 | MS.gene027230:intron | 50.0% | |
| !! | AGGCCGTAAGGAGGGTATTA+TGG | + | chr3.4:45861619-45861638 | MS.gene027230:intron | 50.0% |
| !! | GTGGTTTTACCTCTCTCTCC+CGG | + | chr3.4:45863537-45863556 | MS.gene027230:CDS | 50.0% |
| !! | TAGGTGACTTTAGGATCCCG+AGG | + | chr3.4:45863463-45863482 | MS.gene027230:CDS | 50.0% |
| AGAGAGGAGGTGAGAGCTGA+AGG | - | chr3.4:45862728-45862747 | None:intergenic | 55.0% | |
| GGCAACTTCTCGAGCAAAGC+TGG | - | chr3.4:45863393-45863412 | None:intergenic | 55.0% | |
| TACACGCTCTATCCCCCTCT+TGG | - | chr3.4:45860508-45860527 | None:intergenic | 55.0% | |
| ! | GTTTTACCTCTCTCTCCCGG+AGG | + | chr3.4:45863540-45863559 | MS.gene027230:CDS | 55.0% |
| CGCTCTATCCCCCTCTTGGA+TGG | - | chr3.4:45860504-45860523 | None:intergenic | 60.0% | |
| CTCAAAGACGCTGCTCCTGC+CGG | + | chr3.4:45862754-45862773 | MS.gene027230:CDS | 60.0% | |
| AAAGACGCTGCTCCTGCCGG+CGG | + | chr3.4:45862757-45862776 | MS.gene027230:CDS | 65.0% | |
| AACAGAGAGGCGAGGTCCGC+CGG | - | chr3.4:45862776-45862795 | None:intergenic | 65.0% | |
| GTCAGACCTCCGGGAGAGAG+AGG | - | chr3.4:45863549-45863568 | None:intergenic | 65.0% | |
| ! | GAGAGGCGAGGTCCGCCGGC+AGG | - | chr3.4:45862772-45862791 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 45860495 | 45863821 | 45860495 | ID=MS.gene027230 |
| chr3.4 | mRNA | 45860495 | 45863821 | 45860495 | ID=MS.gene027230.t1;Parent=MS.gene027230 |
| chr3.4 | exon | 45860495 | 45860597 | 45860495 | ID=MS.gene027230.t1.exon1;Parent=MS.gene027230.t1 |
| chr3.4 | CDS | 45860495 | 45860597 | 45860495 | ID=cds.MS.gene027230.t1;Parent=MS.gene027230.t1 |
| chr3.4 | exon | 45861621 | 45861672 | 45861621 | ID=MS.gene027230.t1.exon2;Parent=MS.gene027230.t1 |
| chr3.4 | CDS | 45861621 | 45861672 | 45861621 | ID=cds.MS.gene027230.t1;Parent=MS.gene027230.t1 |
| chr3.4 | exon | 45862732 | 45862903 | 45862732 | ID=MS.gene027230.t1.exon3;Parent=MS.gene027230.t1 |
| chr3.4 | CDS | 45862732 | 45862903 | 45862732 | ID=cds.MS.gene027230.t1;Parent=MS.gene027230.t1 |
| chr3.4 | exon | 45863039 | 45863821 | 45863039 | ID=MS.gene027230.t1.exon4;Parent=MS.gene027230.t1 |
| chr3.4 | CDS | 45863039 | 45863821 | 45863039 | ID=cds.MS.gene027230.t1;Parent=MS.gene027230.t1 |
| Gene Sequence |
| Protein sequence |
