Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027254.t1 | XP_003602984.1 | 95.1 | 391 | 19 | 0 | 1 | 391 | 1 | 391 | 5.80E-210 | 740 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027254.t1 | Q9S7T8 | 50.4 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 7.4e-105 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027254.t1 | G7J5R9 | 95.1 | 391 | 19 | 0 | 1 | 391 | 1 | 391 | 4.2e-210 | 740.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene027254 | PPI |
| MS.gene031697 | MS.gene027254 | PPI |
| MS.gene027254 | MS.gene045585 | PPI |
| MS.gene027254 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene027254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027254.t1 | MTR_3g101130 | 95.141 | 391 | 19 | 0 | 1 | 391 | 1 | 391 | 0.0 | 759 |
| MS.gene027254.t1 | MTR_3g101180 | 65.414 | 399 | 127 | 4 | 1 | 388 | 1 | 399 | 7.31e-179 | 503 |
| MS.gene027254.t1 | MTR_7g050750 | 64.359 | 390 | 134 | 2 | 5 | 389 | 7 | 396 | 2.48e-174 | 491 |
| MS.gene027254.t1 | MTR_8g461160 | 63.776 | 392 | 137 | 2 | 1 | 387 | 1 | 392 | 1.51e-173 | 489 |
| MS.gene027254.t1 | MTR_3g101010 | 64.010 | 389 | 133 | 3 | 5 | 389 | 4 | 389 | 1.16e-167 | 474 |
| MS.gene027254.t1 | MTR_7g050810 | 63.077 | 390 | 137 | 3 | 6 | 389 | 16 | 404 | 1.57e-167 | 474 |
| MS.gene027254.t1 | MTR_3g101200 | 64.103 | 390 | 114 | 4 | 1 | 388 | 26 | 391 | 3.86e-167 | 473 |
| MS.gene027254.t1 | MTR_3g018740 | 62.595 | 393 | 134 | 5 | 1 | 387 | 1 | 386 | 3.09e-165 | 468 |
| MS.gene027254.t1 | MTR_7g451890 | 61.183 | 389 | 146 | 2 | 6 | 389 | 14 | 402 | 1.70e-163 | 464 |
| MS.gene027254.t1 | MTR_7g047780 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 8.41e-162 | 460 |
| MS.gene027254.t1 | MTR_4g045707 | 60.406 | 394 | 145 | 4 | 1 | 389 | 1 | 388 | 6.87e-161 | 457 |
| MS.gene027254.t1 | MTR_8g027395 | 60.560 | 393 | 144 | 3 | 1 | 389 | 12 | 397 | 1.17e-159 | 454 |
| MS.gene027254.t1 | MTR_4g088525 | 63.085 | 363 | 125 | 3 | 30 | 388 | 11 | 368 | 4.36e-155 | 442 |
| MS.gene027254.t1 | MTR_3g101030 | 58.524 | 393 | 144 | 3 | 15 | 389 | 38 | 429 | 6.12e-155 | 444 |
| MS.gene027254.t1 | MTR_8g027420 | 58.779 | 393 | 140 | 4 | 1 | 389 | 1 | 375 | 1.66e-152 | 436 |
| MS.gene027254.t1 | MTR_2g046030 | 57.653 | 392 | 148 | 7 | 5 | 387 | 4 | 386 | 2.02e-147 | 423 |
| MS.gene027254.t1 | MTR_2g045980 | 57.143 | 392 | 150 | 6 | 5 | 387 | 4 | 386 | 1.18e-146 | 421 |
| MS.gene027254.t1 | MTR_3g048000 | 57.584 | 389 | 133 | 6 | 7 | 388 | 28 | 391 | 3.99e-146 | 420 |
| MS.gene027254.t1 | MTR_4g088535 | 55.980 | 393 | 145 | 6 | 1 | 388 | 1 | 370 | 9.88e-139 | 400 |
| MS.gene027254.t1 | MTR_3g101050 | 56.072 | 387 | 145 | 7 | 7 | 387 | 29 | 396 | 6.39e-136 | 394 |
| MS.gene027254.t1 | MTR_3g015620 | 55.784 | 389 | 139 | 6 | 6 | 387 | 16 | 378 | 1.42e-131 | 382 |
| MS.gene027254.t1 | MTR_3g102920 | 54.430 | 395 | 135 | 6 | 1 | 388 | 53 | 409 | 9.10e-130 | 379 |
| MS.gene027254.t1 | MTR_3g101190 | 52.617 | 363 | 104 | 4 | 31 | 389 | 14 | 312 | 5.27e-117 | 343 |
| MS.gene027254.t1 | MTR_3g100995 | 64.567 | 254 | 84 | 3 | 139 | 389 | 14 | 264 | 1.16e-113 | 332 |
| MS.gene027254.t1 | MTR_7g050830 | 54.459 | 314 | 112 | 2 | 6 | 299 | 16 | 318 | 1.91e-107 | 319 |
| MS.gene027254.t1 | MTR_3g015760 | 62.692 | 260 | 90 | 4 | 132 | 387 | 23 | 279 | 1.90e-98 | 294 |
| MS.gene027254.t1 | MTR_3g100010 | 49.051 | 316 | 113 | 3 | 31 | 313 | 40 | 340 | 1.38e-97 | 295 |
| MS.gene027254.t1 | MTR_3g018747 | 57.854 | 261 | 89 | 3 | 132 | 387 | 9 | 253 | 3.58e-96 | 288 |
| MS.gene027254.t1 | MTR_3g114310 | 41.995 | 381 | 196 | 10 | 28 | 389 | 36 | 410 | 2.56e-83 | 260 |
| MS.gene027254.t1 | MTR_3g111160 | 62.326 | 215 | 73 | 2 | 180 | 389 | 9 | 220 | 1.17e-82 | 252 |
| MS.gene027254.t1 | MTR_3g100520 | 57.399 | 223 | 75 | 3 | 173 | 389 | 1 | 209 | 3.70e-82 | 250 |
| MS.gene027254.t1 | MTR_3g101110 | 54.430 | 237 | 73 | 4 | 135 | 363 | 71 | 280 | 3.17e-75 | 235 |
| MS.gene027254.t1 | MTR_2g046410 | 59.615 | 208 | 71 | 4 | 189 | 387 | 144 | 347 | 1.09e-74 | 236 |
| MS.gene027254.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 6.34e-74 | 229 |
| MS.gene027254.t1 | MTR_3g101150 | 65.000 | 160 | 45 | 3 | 238 | 388 | 1 | 158 | 1.17e-62 | 198 |
| MS.gene027254.t1 | MTR_3g101020 | 57.838 | 185 | 52 | 3 | 206 | 389 | 1 | 160 | 1.60e-62 | 198 |
| MS.gene027254.t1 | MTR_3g102870 | 57.792 | 154 | 61 | 1 | 198 | 347 | 4 | 157 | 1.04e-52 | 173 |
| MS.gene027254.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 2.08e-47 | 159 |
| MS.gene027254.t1 | MTR_3g100990 | 62.791 | 129 | 46 | 1 | 4 | 132 | 3 | 129 | 3.05e-42 | 155 |
| MS.gene027254.t1 | MTR_3g101140 | 51.261 | 119 | 47 | 2 | 271 | 389 | 9 | 116 | 1.64e-28 | 108 |
| MS.gene027254.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 6.06e-20 | 84.3 |
| MS.gene027254.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.68e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027254.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 4 | 390 | 4.96e-133 | 387 |
| MS.gene027254.t1 | AT1G47710 | 50.386 | 389 | 185 | 4 | 5 | 387 | 31 | 417 | 2.20e-132 | 386 |
| MS.gene027254.t1 | AT3G45220 | 43.909 | 394 | 200 | 5 | 6 | 386 | 5 | 390 | 1.75e-111 | 332 |
| MS.gene027254.t1 | AT2G25240 | 44.730 | 389 | 196 | 8 | 6 | 386 | 5 | 382 | 2.96e-108 | 323 |
| MS.gene027254.t1 | AT2G26390 | 42.092 | 392 | 206 | 6 | 6 | 386 | 5 | 386 | 7.59e-101 | 305 |
| MS.gene027254.t1 | AT1G62170 | 43.989 | 366 | 175 | 6 | 29 | 386 | 88 | 431 | 9.58e-97 | 295 |
| MS.gene027254.t1 | AT1G64030 | 43.005 | 386 | 198 | 6 | 5 | 386 | 4 | 371 | 3.62e-96 | 292 |
| MS.gene027254.t1 | AT2G14540 | 44.875 | 361 | 178 | 4 | 29 | 386 | 55 | 397 | 1.55e-93 | 286 |
| MS.gene027254.t1 | AT1G62170 | 40.351 | 399 | 175 | 7 | 29 | 386 | 88 | 464 | 8.12e-90 | 279 |
| MS.gene027254.t1 | AT2G35580 | 39.589 | 389 | 207 | 9 | 5 | 386 | 4 | 371 | 6.89e-86 | 266 |
| MS.gene027254.t1 | AT1G64010 | 47.685 | 216 | 90 | 5 | 173 | 386 | 1 | 195 | 1.01e-62 | 200 |
| MS.gene027254.t1 | AT1G64010 | 47.264 | 201 | 83 | 5 | 188 | 386 | 2 | 181 | 1.30e-55 | 181 |
| MS.gene027254.t1 | AT1G62160 | 41.709 | 199 | 87 | 5 | 195 | 386 | 42 | 218 | 1.03e-34 | 128 |
| MS.gene027254.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 129 | 244 | 5 | 120 | 1.64e-32 | 119 |
| MS.gene027254.t1 | AT1G51330 | 44.643 | 112 | 59 | 2 | 130 | 238 | 29 | 140 | 6.41e-25 | 100 |
Find 75 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATGCACTATACTTTAA+AGG | 0.181731 | 3.4:+45097015 | MS.gene027254:CDS |
| CCACGTTTCAAAATTTATTC+TGG | 0.250552 | 3.4:+45097345 | MS.gene027254:CDS |
| ATATCGTTGCCTTTCTTATA+AGG | 0.269460 | 3.4:-45097183 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.4:+45097483 | MS.gene027254:CDS |
| AAATGGCGAACTCTCCGATT+TGG | 0.294557 | 3.4:+45097436 | MS.gene027254:CDS |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.4:-45096638 | None:intergenic |
| AAGTGATAGTGGGTGACTTC+AGG | 0.357075 | 3.4:+45097319 | MS.gene027254:CDS |
| AATGGCGAACTCTCCGATTT+GGG | 0.362900 | 3.4:+45097437 | MS.gene027254:CDS |
| GGTCAGCTACAAAATCTATT+GGG | 0.367281 | 3.4:-45097572 | None:intergenic |
| AGTATCAACAATTTCTTTGA+AGG | 0.389170 | 3.4:-45096752 | None:intergenic |
| TCTAATGTGTCAAAGGAGTT+AGG | 0.389227 | 3.4:+45097378 | MS.gene027254:CDS |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.4:+45096589 | MS.gene027254:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.4:+45096961 | MS.gene027254:CDS |
| TGGTCAGCTACAAAATCTAT+TGG | 0.402096 | 3.4:-45097573 | None:intergenic |
| CTACTATGCTGAGCACAGTT+TGG | 0.403622 | 3.4:-45096540 | None:intergenic |
| TCTGGTACAATACTCTTTGT+TGG | 0.408824 | 3.4:+45097627 | MS.gene027254:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.420477 | 3.4:+45097174 | MS.gene027254:CDS |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.4:+45097254 | MS.gene027254:CDS |
| CTGATAAGAGACGATTTGTC+TGG | 0.447026 | 3.4:+45097609 | MS.gene027254:CDS |
| TCCACGTAAGGAAGTGATAG+TGG | 0.448188 | 3.4:+45097308 | MS.gene027254:CDS |
| CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.4:-45097650 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.4:-45097285 | None:intergenic |
| CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.4:+45097651 | MS.gene027254:CDS |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.4:-45096566 | None:intergenic |
| GTCACTAGAACCGGACTATC+GGG | 0.467305 | 3.4:+45097522 | MS.gene027254:CDS |
| GCTGCTGCAGTCACTAGAAC+CGG | 0.471427 | 3.4:+45097513 | MS.gene027254:CDS |
| TTAAATTAGCGATTGATTCG+CGG | 0.471475 | 3.4:-45096432 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.4:-45097234 | None:intergenic |
| GTCAAACCTCCATCAGAGAA+AGG | 0.475976 | 3.4:-45097411 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.4:-45097280 | None:intergenic |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.4:+45097092 | MS.gene027254:CDS |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.494572 | 3.4:+45096555 | MS.gene027254:CDS |
| TCAACAATTTCTTTGAAGGA+AGG | 0.496277 | 3.4:-45096748 | None:intergenic |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.4:-45096627 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.4:-45096683 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.4:-45096620 | None:intergenic |
| TGAACTTTCTAATGTGTCAA+AGG | 0.513651 | 3.4:+45097371 | MS.gene027254:CDS |
| GAAGGAAGGATAAACAGAAA+GGG | 0.528246 | 3.4:-45096734 | None:intergenic |
| ACGAGCACATCCCGATAGTC+CGG | 0.528493 | 3.4:-45097532 | None:intergenic |
| AGTCACTAGAACCGGACTAT+CGG | 0.529335 | 3.4:+45097521 | MS.gene027254:CDS |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.4:-45097235 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.534096 | 3.4:+45097228 | MS.gene027254:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.4:+45097296 | MS.gene027254:CDS |
| TGAAGGAAGGATAAACAGAA+AGG | 0.536463 | 3.4:-45096735 | None:intergenic |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.4:+45096667 | MS.gene027254:CDS |
| AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.4:-45097450 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.555454 | 3.4:+45096556 | MS.gene027254:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.4:-45096572 | None:intergenic |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.4:-45096651 | None:intergenic |
| TCTCTTATCAGAAACATGAA+AGG | 0.561884 | 3.4:-45097597 | None:intergenic |
| CCCACTATCACTTCCTTACG+TGG | 0.567927 | 3.4:-45097309 | None:intergenic |
| CTCTTATCAGAAACATGAAA+GGG | 0.569385 | 3.4:-45097596 | None:intergenic |
| GTGCTCAGCATAGTAGCTGC+CGG | 0.569522 | 3.4:+45096547 | MS.gene027254:CDS |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.4:+45097022 | MS.gene027254:CDS |
| ATTGGGGTCGGAATTGAAGT+AGG | 0.576372 | 3.4:-45097555 | None:intergenic |
| GCTACAAAATCTATTGGGGT+CGG | 0.598942 | 3.4:-45097567 | None:intergenic |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.4:-45097089 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.4:-45096682 | None:intergenic |
| CTTTCTTATAAGGAAGACGA+AGG | 0.614295 | 3.4:-45097173 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.4:-45096580 | None:intergenic |
| ATCACTTGATTTCATAAACA+AGG | 0.616736 | 3.4:+45096795 | MS.gene027254:CDS |
| GTTAAGCTATTAATTGACCC+AGG | 0.618787 | 3.4:-45096979 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.4:-45096659 | None:intergenic |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.4:-45096644 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+GGG | 0.633032 | 3.4:+45097309 | MS.gene027254:CDS |
| AGCACAGTTTGGAGTGACAA+CGG | 0.634618 | 3.4:-45096529 | None:intergenic |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.4:+45096962 | MS.gene027254:CDS |
| GAAATCAAGTGATCTGAGAG+TGG | 0.639757 | 3.4:-45096785 | None:intergenic |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.4:+45096670 | MS.gene027254:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.4:-45097077 | None:intergenic |
| TTATCAGAAACATGAAAGGG+TGG | 0.645384 | 3.4:-45097593 | None:intergenic |
| GTCAGCTACAAAATCTATTG+GGG | 0.645625 | 3.4:-45097571 | None:intergenic |
| AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.4:-45097663 | None:intergenic |
| AATTAGCGATTGATTCGCGG+TGG | 0.680650 | 3.4:-45096429 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.761019 | 3.4:-45096694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGGAAAATATATAT+AGG | - | chr3.4:45096823-45096842 | None:intergenic | 15.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.4:45097483-45097502 | MS.gene027254:CDS | 20.0% |
| !!! | TTTTACTGTTCAAAAAAAGA+AGG | - | chr3.4:45096837-45096856 | None:intergenic | 20.0% |
| ! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.4:45097453-45097472 | None:intergenic | 25.0% |
| ! | AGTATCAACAATTTCTTTGA+AGG | - | chr3.4:45096755-45096774 | None:intergenic | 25.0% |
| ! | ATCACTTGATTTCATAAACA+AGG | + | chr3.4:45096795-45096814 | MS.gene027254:CDS | 25.0% |
| ! | GTTAATGCACTATACTTTAA+AGG | + | chr3.4:45097015-45097034 | MS.gene027254:CDS | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+CGG | + | chr3.4:45097141-45097160 | MS.gene027254:CDS | 25.0% |
| !!! | TGTTTTTGATAGCAAATGTT+TGG | - | chr3.4:45096479-45096498 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGAAGCATCAAA+TGG | - | chr3.4:45097054-45097073 | None:intergenic | 25.0% |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.4:45097288-45097307 | None:intergenic | 30.0% | |
| ATATCGTTGCCTTTCTTATA+AGG | - | chr3.4:45097186-45097205 | None:intergenic | 30.0% | |
| CCACGTTTCAAAATTTATTC+TGG | + | chr3.4:45097345-45097364 | MS.gene027254:CDS | 30.0% | |
| CGTCAAAAAAGTGAATGTAT+GGG | + | chr3.4:45096915-45096934 | MS.gene027254:CDS | 30.0% | |
| CTCTTATCAGAAACATGAAA+GGG | - | chr3.4:45097599-45097618 | None:intergenic | 30.0% | |
| TATATTTGATGCTGTCGTAA+AGG | + | chr3.4:45096882-45096901 | MS.gene027254:intron | 30.0% | |
| TCTCTTATCAGAAACATGAA+AGG | - | chr3.4:45097600-45097619 | None:intergenic | 30.0% | |
| TGAACTTTCTAATGTGTCAA+AGG | + | chr3.4:45097371-45097390 | MS.gene027254:CDS | 30.0% | |
| ! | TCAACAATTTCTTTGAAGGA+AGG | - | chr3.4:45096751-45096770 | None:intergenic | 30.0% |
| ! | TTCTTTTTGCTAGTCATGAA+GGG | - | chr3.4:45097120-45097139 | None:intergenic | 30.0% |
| !! | TTAAATTAGCGATTGATTCG+CGG | - | chr3.4:45096435-45096454 | None:intergenic | 30.0% |
| !!! | CCAGAATAAATTTTGAAACG+TGG | - | chr3.4:45097348-45097367 | None:intergenic | 30.0% |
| !!! | CCATACATTCACTTTTTTGA+CGG | - | chr3.4:45096917-45096936 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.4:45096961-45096980 | MS.gene027254:CDS | 35.0% | |
| CCGTCAAAAAAGTGAATGTA+TGG | + | chr3.4:45096914-45096933 | MS.gene027254:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.4:45097174-45097193 | MS.gene027254:CDS | 35.0% | |
| CTTTCTTATAAGGAAGACGA+AGG | - | chr3.4:45097176-45097195 | None:intergenic | 35.0% | |
| GAAGGAAGGATAAACAGAAA+GGG | - | chr3.4:45096737-45096756 | None:intergenic | 35.0% | |
| GGTCAGCTACAAAATCTATT+GGG | - | chr3.4:45097575-45097594 | None:intergenic | 35.0% | |
| GTCAGCTACAAAATCTATTG+GGG | - | chr3.4:45097574-45097593 | None:intergenic | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.4:45097283-45097302 | None:intergenic | 35.0% | |
| GTTAAGCTATTAATTGACCC+AGG | - | chr3.4:45096982-45097001 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.4:45097238-45097257 | None:intergenic | 35.0% | |
| TCTAATGTGTCAAAGGAGTT+AGG | + | chr3.4:45097378-45097397 | MS.gene027254:CDS | 35.0% | |
| TCTGGTACAATACTCTTTGT+TGG | + | chr3.4:45097627-45097646 | MS.gene027254:CDS | 35.0% | |
| TGAAGGAAGGATAAACAGAA+AGG | - | chr3.4:45096738-45096757 | None:intergenic | 35.0% | |
| TGATGGAGGTTTGACAAAAA+TGG | + | chr3.4:45097419-45097438 | MS.gene027254:CDS | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.4:45096934-45096953 | MS.gene027254:CDS | 35.0% | |
| TGGTCAGCTACAAAATCTAT+TGG | - | chr3.4:45097576-45097595 | None:intergenic | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.4:45096962-45096981 | MS.gene027254:CDS | 35.0% | |
| TTATCAGAAACATGAAAGGG+TGG | - | chr3.4:45097596-45097615 | None:intergenic | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.4:45097022-45097041 | MS.gene027254:CDS | 35.0% |
| ! | CTTCTTTTTGCTAGTCATGA+AGG | - | chr3.4:45097121-45097140 | None:intergenic | 35.0% |
| ! | TGTCTTTTGTCAACTCTGTT+TGG | + | chr3.4:45096701-45096720 | MS.gene027254:CDS | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.4:45096605-45096624 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.4:45097254-45097273 | MS.gene027254:CDS | 35.0% |
| !! | GTTGTTTTACCTTTCTCTGA+TGG | + | chr3.4:45097402-45097421 | MS.gene027254:CDS | 35.0% |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.4:45097237-45097256 | None:intergenic | 40.0% | |
| CTGATAAGAGACGATTTGTC+TGG | + | chr3.4:45097609-45097628 | MS.gene027254:CDS | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.4:45097296-45097315 | MS.gene027254:CDS | 40.0% | |
| GAAATCAAGTGATCTGAGAG+TGG | - | chr3.4:45096788-45096807 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.4:45096697-45096716 | None:intergenic | 40.0% | |
| GCTACAAAATCTATTGGGGT+CGG | - | chr3.4:45097570-45097589 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.4:45096623-45096642 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCTCTGATGG+AGG | + | chr3.4:45097405-45097424 | MS.gene027254:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.4:45096609-45096628 | None:intergenic | 40.0% |
| AAATGGCGAACTCTCCGATT+TGG | + | chr3.4:45097436-45097455 | MS.gene027254:CDS | 45.0% | |
| AATGGCGAACTCTCCGATTT+GGG | + | chr3.4:45097437-45097456 | MS.gene027254:CDS | 45.0% | |
| AGTCACTAGAACCGGACTAT+CGG | + | chr3.4:45097521-45097540 | MS.gene027254:CDS | 45.0% | |
| ATTGGGGTCGGAATTGAAGT+AGG | - | chr3.4:45097558-45097577 | None:intergenic | 45.0% | |
| CAACAAGAGGATTGAGCACT+TGG | - | chr3.4:45097653-45097672 | None:intergenic | 45.0% | |
| CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.4:45097651-45097670 | MS.gene027254:CDS | 45.0% | |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.4:45097080-45097099 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+GGG | + | chr3.4:45097309-45097328 | MS.gene027254:CDS | 45.0% | |
| CTACTATGCTGAGCACAGTT+TGG | - | chr3.4:45096543-45096562 | None:intergenic | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.4:45096630-45096649 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.4:45096641-45096660 | None:intergenic | 45.0% | |
| GTCAAACCTCCATCAGAGAA+AGG | - | chr3.4:45097414-45097433 | None:intergenic | 45.0% | |
| TCCACGTAAGGAAGTGATAG+TGG | + | chr3.4:45097308-45097327 | MS.gene027254:CDS | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.4:45097228-45097247 | MS.gene027254:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.4:45096532-45096551 | None:intergenic | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.4:45097075-45097094 | MS.gene027254:CDS | 45.0% |
| !! | AAGTGATAGTGGGTGACTTC+AGG | + | chr3.4:45097319-45097338 | MS.gene027254:CDS | 45.0% |
| !! | AATTAGCGATTGATTCGCGG+TGG | - | chr3.4:45096432-45096451 | None:intergenic | 45.0% |
| !! | ATCAAATATAAAATTATATT+AGG | - | chr3.4:45096872-45096891 | None:intergenic | 5.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.4:45096686-45096705 | None:intergenic | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.4:45096647-45096666 | None:intergenic | 50.0% | |
| CCCACTATCACTTCCTTACG+TGG | - | chr3.4:45097312-45097331 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.4:45096654-45096673 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.4:45096685-45096704 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.4:45096583-45096602 | None:intergenic | 50.0% | |
| GTCACTAGAACCGGACTATC+GGG | + | chr3.4:45097522-45097541 | MS.gene027254:CDS | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.4:45097078-45097097 | MS.gene027254:CDS | 50.0% |
| ACGAGCACATCCCGATAGTC+CGG | - | chr3.4:45097535-45097554 | None:intergenic | 55.0% | |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.4:45096589-45096608 | MS.gene027254:CDS | 55.0% | |
| GCTGCTGCAGTCACTAGAAC+CGG | + | chr3.4:45097513-45097532 | MS.gene027254:CDS | 55.0% | |
| GTGCTCAGCATAGTAGCTGC+CGG | + | chr3.4:45096547-45096566 | MS.gene027254:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.4:45097092-45097111 | MS.gene027254:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.4:45097092-45097111 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.4:45096556-45096575 | MS.gene027254:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.4:45096662-45096681 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.4:45096667-45096686 | MS.gene027254:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.4:45096575-45096594 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.4:45096569-45096588 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.4:45096555-45096574 | MS.gene027254:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.4:45096670-45096689 | MS.gene027254:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 45096421 | 45097683 | 45096421 | ID=MS.gene027254 |
| chr3.4 | mRNA | 45096421 | 45097683 | 45096421 | ID=MS.gene027254.t1;Parent=MS.gene027254 |
| chr3.4 | exon | 45096421 | 45096816 | 45096421 | ID=MS.gene027254.t1.exon1;Parent=MS.gene027254.t1 |
| chr3.4 | CDS | 45096421 | 45096816 | 45096421 | ID=cds.MS.gene027254.t1;Parent=MS.gene027254.t1 |
| chr3.4 | exon | 45096904 | 45097683 | 45096904 | ID=MS.gene027254.t1.exon2;Parent=MS.gene027254.t1 |
| chr3.4 | CDS | 45096904 | 45097683 | 45096904 | ID=cds.MS.gene027254.t1;Parent=MS.gene027254.t1 |
| Gene Sequence |
| Protein sequence |
