Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027647.t1 | XP_003613218.1 | 100 | 808 | 0 | 0 | 1 | 808 | 1 | 808 | 0.00E+00 | 1636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027647.t1 | P42347 | 92.9 | 814 | 52 | 1 | 1 | 808 | 1 | 814 | 0.0e+00 | 1529.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027647.t1 | Q8GUA6 | 100.0 | 808 | 0 | 0 | 1 | 808 | 1 | 808 | 0.0e+00 | 1636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059541 | MS.gene027647 | PPI |
| MS.gene027647 | MS.gene66405 | PPI |
| MS.gene027647 | MS.gene66413 | PPI |
| MS.gene027647 | MS.gene063319 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027647.t1 | MTR_5g034120 | 100.000 | 808 | 0 | 0 | 1 | 808 | 1 | 808 | 0.0 | 1670 |
| MS.gene027647.t1 | MTR_3g116250 | 28.778 | 483 | 293 | 19 | 334 | 788 | 1555 | 2014 | 2.81e-34 | 142 |
| MS.gene027647.t1 | MTR_8g093570 | 33.906 | 233 | 141 | 6 | 555 | 777 | 829 | 1058 | 2.90e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027647.t1 | AT1G60490 | 84.049 | 815 | 122 | 4 | 1 | 808 | 1 | 814 | 0.0 | 1415 |
| MS.gene027647.t1 | AT1G49340 | 27.477 | 535 | 336 | 19 | 274 | 781 | 1491 | 2000 | 3.01e-38 | 155 |
| MS.gene027647.t1 | AT1G49340 | 27.477 | 535 | 336 | 19 | 274 | 781 | 1491 | 2000 | 3.01e-38 | 155 |
| MS.gene027647.t1 | AT1G49340 | 27.477 | 535 | 336 | 19 | 274 | 781 | 1484 | 1993 | 3.04e-38 | 155 |
| MS.gene027647.t1 | AT1G49340 | 27.477 | 535 | 336 | 19 | 274 | 781 | 1484 | 1993 | 3.04e-38 | 155 |
| MS.gene027647.t1 | AT5G64070 | 33.617 | 235 | 139 | 7 | 555 | 777 | 861 | 1090 | 5.33e-28 | 122 |
| MS.gene027647.t1 | AT5G09350 | 33.906 | 233 | 141 | 6 | 555 | 777 | 856 | 1085 | 8.18e-28 | 121 |
| MS.gene027647.t1 | AT1G51040 | 28.956 | 297 | 178 | 11 | 511 | 788 | 222 | 504 | 1.95e-19 | 93.2 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAAATAGATTTAAAATT+AGG | 0.176506 | 5.2:-24077249 | None:intergenic |
| CCTGATGATCATGGGCCTTT+TGG | 0.206214 | 5.2:+24075697 | MS.gene027647:CDS |
| TAGATTTAAAATTAGGTTAC+TGG | 0.212396 | 5.2:-24077242 | None:intergenic |
| TGTTCAAATGGTATCGTTAA+TGG | 0.238019 | 5.2:+24074752 | MS.gene027647:CDS |
| AAGCTTAGACAGCTACTTTC+TGG | 0.244205 | 5.2:+24074160 | MS.gene027647:CDS |
| GCCAGTCCACTCGTTGAATT+TGG | 0.248295 | 5.2:-24069995 | None:intergenic |
| ATAGCTTCTGATCCTGAAAA+AGG | 0.252329 | 5.2:+24077298 | MS.gene027647:CDS |
| AAGGAAATAGACCTGAATTA+AGG | 0.256047 | 5.2:-24067297 | None:intergenic |
| TTCATCGTTGGGCTCAATAT+TGG | 0.265072 | 5.2:+24077516 | MS.gene027647:CDS |
| CACATTGATGGCGCGCCGTT+TGG | 0.265882 | 5.2:+24067702 | MS.gene027647:CDS |
| ACTTGAATCTTGTATAATAT+TGG | 0.275932 | 5.2:-24077183 | None:intergenic |
| TTTCCCAATTCCCTTAATTC+AGG | 0.290246 | 5.2:+24067286 | MS.gene027647:CDS |
| TTACTGCACATATGAAATTC+TGG | 0.297436 | 5.2:+24073528 | MS.gene027647:CDS |
| TAGACCTGAATTAAGGGAAT+TGG | 0.308027 | 5.2:-24067290 | None:intergenic |
| AGAAGCTATGTCCGGAATAT+TGG | 0.311004 | 5.2:-24077284 | None:intergenic |
| ATGACCCTACATATGCAAAA+AGG | 0.322562 | 5.2:+24073503 | MS.gene027647:CDS |
| TGCACATTATTAACCTTTCC+AGG | 0.328164 | 5.2:-24069807 | None:intergenic |
| TCACGTTAACAGCTAAATAT+CGG | 0.339699 | 5.2:+24069380 | MS.gene027647:CDS |
| AGCTTCATTGGTGGCGGAAA+TGG | 0.339940 | 5.2:-24077018 | None:intergenic |
| AATTTCTTCGTTGTGTTGAA+TGG | 0.348338 | 5.2:+24071989 | MS.gene027647:CDS |
| ATTTCCTTGCAGAGCTTCAT+TGG | 0.349240 | 5.2:-24077030 | None:intergenic |
| TTACTTGCTCCAATTGGTTC+AGG | 0.349986 | 5.2:+24073278 | MS.gene027647:CDS |
| AGCATTAAGCAATATTGAAT+TGG | 0.350124 | 5.2:+24073444 | MS.gene027647:intron |
| GACCAATACCTCATCAAAAT+AGG | 0.353005 | 5.2:-24074200 | None:intergenic |
| AAAGACTTCCATCGTCTCTT+AGG | 0.355332 | 5.2:-24076954 | None:intergenic |
| CCATACAAGGTTCTAGCAAC+TGG | 0.356646 | 5.2:+24074816 | MS.gene027647:CDS |
| CCAATGATATTGTTATTGTC+TGG | 0.358804 | 5.2:+24071045 | MS.gene027647:CDS |
| ATTTAAACGGTGGCAGAGTT+TGG | 0.367837 | 5.2:+24074051 | MS.gene027647:CDS |
| GGAAGCAAAAGCTTAGGCTT+TGG | 0.380644 | 5.2:+24069745 | MS.gene027647:CDS |
| GGAAAAGTTTCGGTTGGACT+TGG | 0.385873 | 5.2:+24077412 | MS.gene027647:CDS |
| ATCACATATATACTTGGTAT+TGG | 0.386539 | 5.2:+24075775 | MS.gene027647:CDS |
| TCTCATGGTGAAGGATTGAT+TGG | 0.388746 | 5.2:+24069675 | MS.gene027647:CDS |
| GAAGCAAAAGCTTAGGCTTT+GGG | 0.388788 | 5.2:+24069746 | MS.gene027647:CDS |
| TCGCCTCACGTTCAAAACTA+TGG | 0.389595 | 5.2:+24070022 | MS.gene027647:CDS |
| TTAGGTCCCTAGGCATGAAC+GGG | 0.395425 | 5.2:+24069926 | MS.gene027647:intron |
| TCCAATTGGTTCAGGCTCTT+CGG | 0.397784 | 5.2:+24073286 | MS.gene027647:CDS |
| ATCCCAGTGATGAGCACATC+TGG | 0.403063 | 5.2:-24074406 | None:intergenic |
| TACTTTCTCTCATTTGAGCT+TGG | 0.405483 | 5.2:-24071161 | None:intergenic |
| GGCTCTTCGGTTCGAGAGAT+CGG | 0.414772 | 5.2:+24073299 | MS.gene027647:CDS |
| CCCTACCTGTGCTAATGAAC+GGG | 0.416972 | 5.2:-24074871 | None:intergenic |
| AGGAAATAGACCTGAATTAA+GGG | 0.417957 | 5.2:-24067296 | None:intergenic |
| TTCTTTGATGTCTGAGAAGA+GGG | 0.418191 | 5.2:+24071957 | MS.gene027647:CDS |
| GATGGCGGGTTCCAATATTC+CGG | 0.423699 | 5.2:+24077273 | MS.gene027647:CDS |
| AGACCTGAATTAAGGGAATT+GGG | 0.427233 | 5.2:-24067289 | None:intergenic |
| TACAGCTCCAGGAAAAGTTT+CGG | 0.427922 | 5.2:+24077402 | MS.gene027647:intron |
| TTCCGCATCGAACGCCTTGA+AGG | 0.429980 | 5.2:+24067253 | MS.gene027647:CDS |
| CCAGTTGCTAGAACCTTGTA+TGG | 0.430909 | 5.2:-24074816 | None:intergenic |
| ACACCAGATGTGCTCATCAC+TGG | 0.432555 | 5.2:+24074403 | MS.gene027647:CDS |
| ATTGGTGGCGGAAATGGCTT+AGG | 0.435687 | 5.2:-24077012 | None:intergenic |
| GTTGTATGCTTCACAACAAT+AGG | 0.437263 | 5.2:-24077206 | None:intergenic |
| GAAACAAGCACTAGAATTGA+TGG | 0.437691 | 5.2:+24072539 | MS.gene027647:CDS |
| GAAAGGGTAAATTGCCTTCA+AGG | 0.440046 | 5.2:-24067267 | None:intergenic |
| ATATCATTGGTCGAAGCTAT+AGG | 0.441914 | 5.2:-24071032 | None:intergenic |
| CAAGGAAATGGTTGAGGCTA+TGG | 0.443471 | 5.2:+24077044 | MS.gene027647:CDS |
| AGCCTGTATACATTTCTTCC+AGG | 0.443637 | 5.2:+24077442 | MS.gene027647:CDS |
| AATTGGCAAGCTTTCTTCGC+TGG | 0.446366 | 5.2:+24073461 | MS.gene027647:CDS |
| AATGAAGCTCTGCAAGGAAA+TGG | 0.448445 | 5.2:+24077032 | MS.gene027647:CDS |
| CCCTAACAATTTCACATGAC+TGG | 0.450078 | 5.2:+24067181 | None:intergenic |
| GAGTGTGCGTTGCACATTGA+TGG | 0.450351 | 5.2:+24067690 | MS.gene027647:CDS |
| TCAATGTTACTTGCTCCAAT+TGG | 0.451060 | 5.2:+24073272 | MS.gene027647:CDS |
| CCAAAAGGCCCATGATCATC+AGG | 0.453310 | 5.2:-24075697 | None:intergenic |
| CGCTCTCGTTGATAAGATCC+TGG | 0.454719 | 5.2:-24077460 | None:intergenic |
| GTGAAGCATACAACATTCTT+CGG | 0.454783 | 5.2:+24077215 | MS.gene027647:CDS |
| GGTTGAGACCATTCATCGTT+GGG | 0.455522 | 5.2:+24077505 | MS.gene027647:CDS |
| CCACGGGACCCTCGTATTGT+TGG | 0.464547 | 5.2:+24069347 | MS.gene027647:CDS |
| CTTGTTGTAGAAAATGATGA+TGG | 0.464644 | 5.2:+24067648 | MS.gene027647:intron |
| CCAGACAATAACAATATCAT+TGG | 0.466559 | 5.2:-24071045 | None:intergenic |
| ACCGAAGAGCCTGAACCAAT+TGG | 0.466842 | 5.2:-24073287 | None:intergenic |
| CAATGATATTGTTATTGTCT+GGG | 0.467655 | 5.2:+24071046 | MS.gene027647:CDS |
| GCAGGAATACCAACTGGTCC+TGG | 0.471798 | 5.2:-24074543 | None:intergenic |
| TATAAACGTTTCAAGACAGT+TGG | 0.477924 | 5.2:-24075728 | None:intergenic |
| GGACTTTGAGTGGAGATGAT+AGG | 0.478943 | 5.2:+24071911 | MS.gene027647:CDS |
| CCTGCATTTAACTCCATACA+AGG | 0.479213 | 5.2:+24074803 | MS.gene027647:CDS |
| CTGGTGAAGGTTGGAGTCCA+CGG | 0.480995 | 5.2:+24069330 | MS.gene027647:intron |
| TGGGATCTTTCTCATGGTGA+AGG | 0.482025 | 5.2:+24069666 | MS.gene027647:CDS |
| TCTCCACTCAAAGTCCTTGT+TGG | 0.482283 | 5.2:-24071904 | None:intergenic |
| GCCAAATTCAACGAGTGGAC+TGG | 0.484095 | 5.2:+24069994 | MS.gene027647:CDS |
| CACGTTAACAGCTAAATATC+GGG | 0.491737 | 5.2:+24069381 | MS.gene027647:CDS |
| TCAGGATCAGAAGCTATGTC+CGG | 0.491939 | 5.2:-24077292 | None:intergenic |
| CAGGTTTGGGATCTTTCTCA+TGG | 0.498015 | 5.2:+24069660 | MS.gene027647:intron |
| CACCAGATGTGCTCATCACT+GGG | 0.498800 | 5.2:+24074404 | MS.gene027647:CDS |
| ATCCTGGAAGAAATGTATAC+AGG | 0.501151 | 5.2:-24077444 | None:intergenic |
| ACCAAGTATATATGTGATAA+CGG | 0.501900 | 5.2:-24075770 | None:intergenic |
| GACACCACGGGTTAAACTCC+TGG | 0.502225 | 5.2:-24071120 | None:intergenic |
| TGTGTCCTCATTAGGTCCCT+AGG | 0.503314 | 5.2:+24069916 | MS.gene027647:intron |
| ACCTTTCCAGGTGTAGAAGT+AGG | 0.504443 | 5.2:-24069795 | None:intergenic |
| AAGATGATATAACCTTGTTC+TGG | 0.504774 | 5.2:-24067733 | None:intergenic |
| ATATTGAGCCCAACGATGAA+TGG | 0.507424 | 5.2:-24077513 | None:intergenic |
| TTTAACTGTTTATGCTCAGA+GGG | 0.508499 | 5.2:-24071092 | None:intergenic |
| CCTTTCCAGGTGTAGAAGTA+GGG | 0.509565 | 5.2:-24069794 | None:intergenic |
| ATACTTCAATATTCTCTGAA+TGG | 0.509593 | 5.2:-24071878 | None:intergenic |
| TCCATCCCGTTCATTAGCAC+AGG | 0.513341 | 5.2:+24074866 | MS.gene027647:CDS |
| ATAAACAGTTAAAGCTGGCC+AGG | 0.513701 | 5.2:+24071102 | MS.gene027647:CDS |
| CGTTCGATGCGGAAAGTGAC+GGG | 0.517013 | 5.2:-24067244 | None:intergenic |
| AAGCTTTCTTCGCTGGTATG+TGG | 0.517061 | 5.2:+24073468 | MS.gene027647:CDS |
| GGTGCAAACGGAGAGGAAGA+TGG | 0.517256 | 5.2:+24074028 | MS.gene027647:CDS |
| CTAGCAACTGGGCAAGATGA+AGG | 0.518120 | 5.2:+24074828 | MS.gene027647:CDS |
| CAAAACTATGGAGAAAATCA+AGG | 0.519164 | 5.2:+24070034 | MS.gene027647:CDS |
| TGGTGAAGGTTGGAGTCCAC+GGG | 0.519827 | 5.2:+24069331 | MS.gene027647:intron |
| CCACTCAAAGTCCTTGTTGG+TGG | 0.523782 | 5.2:-24071901 | None:intergenic |
| CAAAAGCTTAGGCTTTGGGC+AGG | 0.524104 | 5.2:+24069750 | MS.gene027647:CDS |
| TTAAATATTGATGACTCTGA+GGG | 0.524865 | 5.2:-24074433 | None:intergenic |
| CAGATGGGAGCTGGTGCAAA+CGG | 0.525919 | 5.2:+24074016 | MS.gene027647:intron |
| TCCGTTATCACATATATACT+TGG | 0.530140 | 5.2:+24075769 | MS.gene027647:CDS |
| TCCTTGCAGAGCTTCATTGG+TGG | 0.531959 | 5.2:-24077027 | None:intergenic |
| TGTTGAATGGAGTGATGTAC+AGG | 0.532745 | 5.2:+24072002 | MS.gene027647:CDS |
| CCCTACTTCTACACCTGGAA+AGG | 0.534797 | 5.2:+24069794 | MS.gene027647:CDS |
| CAGTTGGCTGTAATTCCAAA+AGG | 0.534886 | 5.2:-24075712 | None:intergenic |
| TTCCATCGTCTCTTAGGAGG+AGG | 0.535524 | 5.2:-24076948 | None:intergenic |
| TTTCTTTGATGTCTGAGAAG+AGG | 0.535885 | 5.2:+24071956 | MS.gene027647:CDS |
| TTGCAGAGCTTCATTGGTGG+CGG | 0.538044 | 5.2:-24077024 | None:intergenic |
| GAGTGCATTGTTCCCTCAGA+TGG | 0.538202 | 5.2:+24077484 | MS.gene027647:CDS |
| GATTGACGTTTGTGATGCAC+TGG | 0.539342 | 5.2:+24072575 | MS.gene027647:CDS |
| CCAAAATCTCAGATGGGAGC+TGG | 0.541918 | 5.2:+24074007 | MS.gene027647:intron |
| CACTAGAATTGATGGGCAAG+TGG | 0.544415 | 5.2:+24072547 | MS.gene027647:CDS |
| GCTCCAGGAAAAGTTTCGGT+TGG | 0.551085 | 5.2:+24077406 | MS.gene027647:intron |
| GTTCAATCACTAGAGATGTC+AGG | 0.551302 | 5.2:+24074104 | MS.gene027647:CDS |
| ATGATATAACCTTGTTCTGG+TGG | 0.552076 | 5.2:-24067730 | None:intergenic |
| ATTAGGTCCCTAGGCATGAA+CGG | 0.552317 | 5.2:+24069925 | MS.gene027647:intron |
| GGTGTCAGAGGTGATCGTAT+TGG | 0.554165 | 5.2:-24074385 | None:intergenic |
| TGAATGGTCTCAACCATCTG+AGG | 0.555119 | 5.2:-24077497 | None:intergenic |
| GTTCTGGTGGGAAGTCCAAA+CGG | 0.556275 | 5.2:-24067717 | None:intergenic |
| AAGGAAATGGTTGAGGCTAT+GGG | 0.556476 | 5.2:+24077045 | MS.gene027647:CDS |
| GCGTTCGATGCGGAAAGTGA+CGG | 0.556749 | 5.2:-24067245 | None:intergenic |
| CATGGTGAAGGATTGATTGG+AGG | 0.557450 | 5.2:+24069678 | MS.gene027647:CDS |
| TGAATTAAGGGAATTGGGAA+AGG | 0.557858 | 5.2:-24067284 | None:intergenic |
| TTTAAATATTGATGACTCTG+AGG | 0.558343 | 5.2:-24074434 | None:intergenic |
| GAGAGGAAGATGGATTTAAA+CGG | 0.558804 | 5.2:+24074038 | MS.gene027647:CDS |
| AGGCTATGGGTGGAGCTGAA+AGG | 0.561462 | 5.2:+24077058 | MS.gene027647:CDS |
| ATATACTTGGTATTGGAGAC+AGG | 0.562402 | 5.2:+24075782 | MS.gene027647:CDS |
| AGACTGGGAAGCAAAAGCTT+AGG | 0.563123 | 5.2:+24069739 | MS.gene027647:CDS |
| ACCCTACCTGTGCTAATGAA+CGG | 0.563767 | 5.2:-24074872 | None:intergenic |
| TGAGCATAAACAGTTAAAGC+TGG | 0.564717 | 5.2:+24071097 | MS.gene027647:CDS |
| CCTTGTATGGAGTTAAATGC+AGG | 0.566490 | 5.2:-24074803 | None:intergenic |
| TGGTTGAGACCATTCATCGT+TGG | 0.569134 | 5.2:+24077504 | MS.gene027647:CDS |
| TCTGGAGGAGTATATGATGA+AGG | 0.572902 | 5.2:+24073546 | MS.gene027647:CDS |
| TGGGCAAGATGAAGGCATGT+TGG | 0.574569 | 5.2:+24074836 | MS.gene027647:CDS |
| GCTCTGCAAGGAAATGGTTG+AGG | 0.577513 | 5.2:+24077038 | MS.gene027647:CDS |
| GACTTCCATCGTCTCTTAGG+AGG | 0.577553 | 5.2:-24076951 | None:intergenic |
| GAATTAAGGGAATTGGGAAA+GGG | 0.579406 | 5.2:-24067283 | None:intergenic |
| GTTGTTAAAGAGAAGAATTG+TGG | 0.583980 | 5.2:-24069703 | None:intergenic |
| TGCCTTCAAGGCGTTCGATG+CGG | 0.584785 | 5.2:-24067255 | None:intergenic |
| GGTCCCTAGGCATGAACGGG+GGG | 0.585456 | 5.2:+24069929 | MS.gene027647:intron |
| TATTGTCTGGGACCCAGAAG+TGG | 0.588125 | 5.2:+24071058 | MS.gene027647:CDS |
| TCTTCTTCTGTGTATTACCT+CGG | 0.588947 | 5.2:-24074132 | None:intergenic |
| CTTTAACTGTTTATGCTCAG+AGG | 0.591757 | 5.2:-24071093 | None:intergenic |
| ATCTCTGTCTATGACACCAC+GGG | 0.595270 | 5.2:-24071132 | None:intergenic |
| TGGAAGTGCTCATTTGTATG+TGG | 0.595283 | 5.2:+24070076 | MS.gene027647:CDS |
| TGATCTTCGCCAGGACCAGT+TGG | 0.597803 | 5.2:+24074534 | MS.gene027647:CDS |
| ACTAGAATTGATGGGCAAGT+GGG | 0.598933 | 5.2:+24072548 | MS.gene027647:CDS |
| TTGGTCGAAGCTATAGGAGA+TGG | 0.600468 | 5.2:-24071026 | None:intergenic |
| TTGGACTTCCCACCAGAACA+AGG | 0.604060 | 5.2:+24067721 | MS.gene027647:CDS |
| CCACCAACAAGGACTTTGAG+TGG | 0.604075 | 5.2:+24071901 | MS.gene027647:CDS |
| GAGATGATAGGCAACTCTTG+TGG | 0.604236 | 5.2:+24071923 | MS.gene027647:CDS |
| TGATATAACCTTGTTCTGGT+GGG | 0.608995 | 5.2:-24067729 | None:intergenic |
| ACATTCCCTACTTCTACACC+TGG | 0.610568 | 5.2:+24069789 | MS.gene027647:CDS |
| CATACAAGGTTCTAGCAACT+GGG | 0.611041 | 5.2:+24074817 | MS.gene027647:CDS |
| AAACAAGCACTAGAATTGAT+GGG | 0.614052 | 5.2:+24072540 | MS.gene027647:CDS |
| TGGGCAGGAAAAGAAGCAGA+TGG | 0.617410 | 5.2:+24069765 | MS.gene027647:CDS |
| ACCTGTGCTAATGAACGGGA+TGG | 0.618260 | 5.2:-24074867 | None:intergenic |
| AACCTCCTCCTAAGAGACGA+TGG | 0.624022 | 5.2:+24076946 | MS.gene027647:CDS |
| ATTGTCTGGGACCCAGAAGT+GGG | 0.631740 | 5.2:+24071059 | MS.gene027647:CDS |
| GCCACCAATGAAGCTCTGCA+AGG | 0.636272 | 5.2:+24077026 | MS.gene027647:CDS |
| TGGAACTGCAGAGTTATATG+TGG | 0.636425 | 5.2:+24067668 | MS.gene027647:CDS |
| AGGTCCCTAGGCATGAACGG+GGG | 0.637589 | 5.2:+24069928 | MS.gene027647:intron |
| GAATAAAACCAAAATCAACA+TGG | 0.639157 | 5.2:-24076978 | None:intergenic |
| GAGCTCATTCCAACAATACG+AGG | 0.645146 | 5.2:-24069356 | None:intergenic |
| GCGAGGCCAAATTCAACGAG+TGG | 0.647883 | 5.2:+24069989 | MS.gene027647:CDS |
| GAACACTCACTGCATAAGCA+CGG | 0.655020 | 5.2:-24073224 | None:intergenic |
| GAAATGGTTGAGGCTATGGG+TGG | 0.659442 | 5.2:+24077048 | MS.gene027647:CDS |
| TAGGTCCCTAGGCATGAACG+GGG | 0.661850 | 5.2:+24069927 | MS.gene027647:intron |
| ATGAGCACATCTGGTGTCAG+AGG | 0.665902 | 5.2:-24074397 | None:intergenic |
| GAATGGTCTCAACCATCTGA+GGG | 0.666217 | 5.2:-24077496 | None:intergenic |
| CTGCACATATGAAATTCTGG+AGG | 0.666533 | 5.2:+24073531 | MS.gene027647:CDS |
| ACCCCATGCACATACCACGC+TGG | 0.667482 | 5.2:-24073350 | None:intergenic |
| GGGAGCTGGTGCAAACGGAG+AGG | 0.679178 | 5.2:+24074021 | MS.gene027647:CDS |
| AGGAAGATGGATTTAAACGG+TGG | 0.680685 | 5.2:+24074041 | MS.gene027647:CDS |
| GATCTCTGTCTATGACACCA+CGG | 0.681065 | 5.2:-24071133 | None:intergenic |
| CCAACAATACGAGGGTCCCG+TGG | 0.688862 | 5.2:-24069347 | None:intergenic |
| TATTGAAGTATCCACCAACA+AGG | 0.699350 | 5.2:+24071890 | MS.gene027647:CDS |
| AGAGATGTCAGGAATGTCCG+AGG | 0.705449 | 5.2:+24074115 | MS.gene027647:CDS |
| AGCTCATTCCAACAATACGA+GGG | 0.708520 | 5.2:-24069355 | None:intergenic |
| CTGGCCAGGAGTTTAACCCG+TGG | 0.725449 | 5.2:+24071116 | MS.gene027647:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 24067196 | 24077544 | 24067196 | ID=MS.gene027647 |
| chr5.2 | mRNA | 24067196 | 24077544 | 24067196 | ID=MS.gene027647.t1;Parent=MS.gene027647 |
| chr5.2 | exon | 24067196 | 24067307 | 24067196 | ID=MS.gene027647.t1.exon1;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24067196 | 24067307 | 24067196 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24067658 | 24067742 | 24067658 | ID=MS.gene027647.t1.exon2;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24067658 | 24067742 | 24067658 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24069339 | 24069435 | 24069339 | ID=MS.gene027647.t1.exon3;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24069339 | 24069435 | 24069339 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24069663 | 24069815 | 24069663 | ID=MS.gene027647.t1.exon4;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24069663 | 24069815 | 24069663 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24069930 | 24070139 | 24069930 | ID=MS.gene027647.t1.exon5;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24069930 | 24070139 | 24069930 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24071002 | 24071180 | 24071002 | ID=MS.gene027647.t1.exon6;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24071002 | 24071180 | 24071002 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24071876 | 24072023 | 24071876 | ID=MS.gene027647.t1.exon7;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24071876 | 24072023 | 24071876 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24072534 | 24072629 | 24072534 | ID=MS.gene027647.t1.exon8;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24072534 | 24072629 | 24072534 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24073222 | 24073357 | 24073222 | ID=MS.gene027647.t1.exon9;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24073222 | 24073357 | 24073222 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24073446 | 24073567 | 24073446 | ID=MS.gene027647.t1.exon10;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24073446 | 24073567 | 24073446 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24074019 | 24074213 | 24074019 | ID=MS.gene027647.t1.exon11;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24074019 | 24074213 | 24074019 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24074385 | 24074555 | 24074385 | ID=MS.gene027647.t1.exon12;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24074385 | 24074555 | 24074385 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24074750 | 24074887 | 24074750 | ID=MS.gene027647.t1.exon13;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24074750 | 24074887 | 24074750 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24075649 | 24075803 | 24075649 | ID=MS.gene027647.t1.exon14;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24075649 | 24075803 | 24075649 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24076936 | 24077079 | 24076936 | ID=MS.gene027647.t1.exon15;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24076936 | 24077079 | 24076936 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24077183 | 24077330 | 24077183 | ID=MS.gene027647.t1.exon16;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24077183 | 24077330 | 24077183 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| chr5.2 | exon | 24077407 | 24077544 | 24077407 | ID=MS.gene027647.t1.exon17;Parent=MS.gene027647.t1 |
| chr5.2 | CDS | 24077407 | 24077544 | 24077407 | ID=cds.MS.gene027647.t1;Parent=MS.gene027647.t1 |
| Gene Sequence |
| Protein sequence |
