Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027896.t1 | XP_003612875.1 | 91.8 | 146 | 10 | 2 | 1 | 146 | 143 | 286 | 4.70E-58 | 234.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027896.t1 | Q9FGS0 | 36.9 | 130 | 79 | 2 | 1 | 130 | 161 | 287 | 2.1e-14 | 80.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027896.t1 | G7KDR6 | 91.8 | 146 | 10 | 2 | 1 | 146 | 143 | 286 | 3.4e-58 | 234.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027896 | MS.gene76448 | PPI |
| MS.gene027896 | MS.gene89616 | PPI |
| MS.gene027896 | MS.gene012058 | PPI |
| MS.gene027896 | MS.gene02482 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027896.t1 | MTR_5g030020 | 86.957 | 184 | 14 | 4 | 1 | 176 | 143 | 324 | 1.68e-88 | 262 |
| MS.gene027896.t1 | MTR_3g075500 | 40.458 | 131 | 74 | 3 | 1 | 129 | 157 | 285 | 2.45e-20 | 85.9 |
| MS.gene027896.t1 | MTR_1g045510 | 37.209 | 129 | 75 | 2 | 1 | 129 | 161 | 283 | 4.24e-20 | 85.1 |
| MS.gene027896.t1 | MTR_7g106440 | 30.872 | 149 | 71 | 3 | 1 | 130 | 157 | 292 | 9.65e-18 | 79.0 |
| MS.gene027896.t1 | MTR_1g056520 | 37.226 | 137 | 66 | 5 | 1 | 126 | 156 | 283 | 1.27e-17 | 78.6 |
| MS.gene027896.t1 | MTR_3g075500 | 41.379 | 116 | 64 | 3 | 1 | 114 | 157 | 270 | 7.32e-17 | 76.3 |
| MS.gene027896.t1 | MTR_3g099590 | 36.552 | 145 | 87 | 3 | 1 | 142 | 136 | 278 | 1.12e-16 | 75.9 |
| MS.gene027896.t1 | MTR_4g104470 | 33.333 | 129 | 83 | 2 | 1 | 129 | 170 | 295 | 8.23e-16 | 73.6 |
| MS.gene027896.t1 | MTR_3g027140 | 34.615 | 130 | 73 | 5 | 1 | 123 | 108 | 232 | 3.22e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027896.t1 | AT2G35410 | 50.000 | 172 | 74 | 3 | 1 | 165 | 142 | 308 | 5.84e-50 | 163 |
| MS.gene027896.t1 | AT5G50250 | 37.879 | 132 | 79 | 2 | 1 | 132 | 161 | 289 | 2.88e-20 | 85.5 |
| MS.gene027896.t1 | AT4G24770 | 37.209 | 129 | 78 | 2 | 1 | 129 | 198 | 323 | 1.41e-19 | 84.3 |
| MS.gene027896.t1 | AT4G24770 | 37.209 | 129 | 78 | 2 | 1 | 129 | 198 | 323 | 1.41e-19 | 84.3 |
| MS.gene027896.t1 | AT4G09040 | 38.710 | 124 | 70 | 2 | 1 | 121 | 81 | 201 | 1.96e-19 | 82.8 |
| MS.gene027896.t1 | AT4G09040 | 38.710 | 124 | 70 | 2 | 1 | 121 | 141 | 261 | 6.36e-19 | 82.4 |
| MS.gene027896.t1 | AT1G60000 | 34.884 | 129 | 79 | 2 | 1 | 129 | 133 | 256 | 1.46e-17 | 77.8 |
| MS.gene027896.t1 | AT3G52380 | 30.070 | 143 | 78 | 4 | 1 | 129 | 164 | 298 | 1.16e-14 | 70.9 |
| MS.gene027896.t1 | AT2G37220 | 30.065 | 153 | 75 | 3 | 1 | 129 | 139 | 283 | 1.17e-13 | 67.8 |
| MS.gene027896.t1 | AT3G52150 | 34.586 | 133 | 73 | 5 | 1 | 124 | 124 | 251 | 9.12e-12 | 62.0 |
| MS.gene027896.t1 | AT3G52150 | 34.586 | 133 | 73 | 5 | 1 | 124 | 124 | 251 | 9.12e-12 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTCAACAATTTC+TGG | 0.102693 | 5.4:+20304557 | None:intergenic |
| GTGGGAGCTGGAGGAGGTGG+AGG | 0.249111 | 5.4:+20307880 | None:intergenic |
| ACTTTCTCTCCAACAACTTC+TGG | 0.258246 | 5.4:+20304593 | None:intergenic |
| ACATTTGTTACTATGGATTC+AGG | 0.282353 | 5.4:-20309441 | None:intergenic |
| ATTAGGATTTATGACTCTTC+TGG | 0.285662 | 5.4:+20304521 | None:intergenic |
| TATCCCTTTGCAGGAGTTAC+TGG | 0.285943 | 5.4:-20304708 | MS.gene027896:intron |
| GGAGCTGGAGGAGGTGGAGG+AGG | 0.377123 | 5.4:+20307883 | None:intergenic |
| GGAGTGGGAGCTGGAGGAGG+TGG | 0.381685 | 5.4:+20307877 | None:intergenic |
| AAATATCAGGCCGGATAGTA+AGG | 0.395140 | 5.4:-20307933 | MS.gene027896:CDS |
| CTTCCCTTGCAAAGCAGAAA+TGG | 0.396033 | 5.4:+20307666 | None:intergenic |
| GGTGGGAAATCTGCTGGGTA+TGG | 0.419393 | 5.4:-20307727 | MS.gene027896:CDS |
| AAGACAACCCTGGCTGAAAC+TGG | 0.421042 | 5.4:+20307760 | None:intergenic |
| ACCCCTGGTGGGAAATCTGC+TGG | 0.433529 | 5.4:-20307733 | MS.gene027896:CDS |
| TTAGGAGTGGGAGCTGGAGG+AGG | 0.441065 | 5.4:+20307874 | None:intergenic |
| ATTACATAACGTGCTTCCTT+AGG | 0.449237 | 5.4:+20307856 | None:intergenic |
| AGGGTTGTCTTTCAAACCCC+TGG | 0.459212 | 5.4:-20307748 | MS.gene027896:CDS |
| TGGATTTGTTTCTTATCATA+CGG | 0.462438 | 5.4:-20307707 | MS.gene027896:CDS |
| AAGAAAACACTTAAAGAAGC+TGG | 0.463429 | 5.4:-20304656 | MS.gene027896:CDS |
| TCAAAACACCAGTTTCAGCC+AGG | 0.476508 | 5.4:-20307768 | MS.gene027896:CDS |
| GCTGGAAGTGAAGAAGTTGT+TGG | 0.478727 | 5.4:-20304638 | MS.gene027896:CDS |
| GGATTCAGGAGAGGAGGCTC+AGG | 0.485969 | 5.4:-20309427 | MS.gene027896:CDS |
| TCCTTAGGAGTGGGAGCTGG+AGG | 0.495862 | 5.4:+20307871 | None:intergenic |
| TGTCTGGTTCAGGAAATATC+AGG | 0.499134 | 5.4:-20307946 | MS.gene027896:intron |
| TAGATCTTGCTTTCCACGCA+AGG | 0.504732 | 5.4:+20307821 | None:intergenic |
| CAAACTCTACCCTTACTATC+CGG | 0.508382 | 5.4:+20307923 | None:intergenic |
| GACGCTCAACCAGAAGTTGT+TGG | 0.513611 | 5.4:-20304602 | MS.gene027896:CDS |
| TACCCAGCAGATTTCCCACC+AGG | 0.524803 | 5.4:+20307730 | None:intergenic |
| TCCTCCAGCTCCCACTCCTA+AGG | 0.525600 | 5.4:-20307872 | MS.gene027896:CDS |
| GCTTCCTTAGGAGTGGGAGC+TGG | 0.530043 | 5.4:+20307868 | None:intergenic |
| GTAAGGGTAGAGTTTGCAAA+GGG | 0.535644 | 5.4:-20307916 | MS.gene027896:CDS |
| ATCCCTTTGCAGGAGTTACT+GGG | 0.540062 | 5.4:-20304707 | MS.gene027896:intron |
| CTGCCATTTCTGCTTTGCAA+GGG | 0.550388 | 5.4:-20307669 | MS.gene027896:CDS |
| AGTAAGGGTAGAGTTTGCAA+AGG | 0.552899 | 5.4:-20307917 | MS.gene027896:CDS |
| CATTTCTGCTTTGCAAGGGA+AGG | 0.553509 | 5.4:-20307665 | MS.gene027896:intron |
| GCTGCCATTTCTGCTTTGCA+AGG | 0.563024 | 5.4:-20307670 | MS.gene027896:CDS |
| CCCCTGGTGGGAAATCTGCT+GGG | 0.563781 | 5.4:-20307732 | MS.gene027896:CDS |
| TCTTGCTTTCCACGCAAGGT+TGG | 0.567345 | 5.4:+20307825 | None:intergenic |
| TACTATGGATTCAGGAGAGG+AGG | 0.578732 | 5.4:-20309433 | None:intergenic |
| TGTTTCTTATCATACGGAGG+AGG | 0.584671 | 5.4:-20307701 | MS.gene027896:CDS |
| TGTTACTATGGATTCAGGAG+AGG | 0.585105 | 5.4:-20309436 | None:intergenic |
| CCCAGCAGATTTCCCACCAG+GGG | 0.587328 | 5.4:+20307732 | None:intergenic |
| TCTATGCATCCAACCTTGCG+TGG | 0.590146 | 5.4:-20307834 | MS.gene027896:CDS |
| GTTGTCTTTCAAACCCCTGG+TGG | 0.593929 | 5.4:-20307745 | MS.gene027896:CDS |
| CAAAACACCAGTTTCAGCCA+GGG | 0.593941 | 5.4:-20307767 | MS.gene027896:CDS |
| TAACGTGCTTCCTTAGGAGT+GGG | 0.608846 | 5.4:+20307862 | None:intergenic |
| TTGTCTTTCAAACCCCTGGT+GGG | 0.617575 | 5.4:-20307744 | MS.gene027896:CDS |
| ATAACGTGCTTCCTTAGGAG+TGG | 0.620126 | 5.4:+20307861 | None:intergenic |
| AATATCAGGCCGGATAGTAA+GGG | 0.636833 | 5.4:-20307932 | MS.gene027896:CDS |
| ATTTGTTTCTTATCATACGG+AGG | 0.652812 | 5.4:-20307704 | MS.gene027896:CDS |
| TGGTTCAGGAAATATCAGGC+CGG | 0.656046 | 5.4:-20307942 | MS.gene027896:intron |
| ACCCAGCAGATTTCCCACCA+GGG | 0.675913 | 5.4:+20307731 | None:intergenic |
| AGGGGTTTGAAAGACAACCC+TGG | 0.712579 | 5.4:+20307750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTATTTAATTAGAC+AGG | + | chr5.4:20304991-20305010 | None:intergenic | 10.0% |
| !!! | ATTTAGAAACATTTTTTTAA+AGG | - | chr5.4:20304756-20304775 | MS.gene027896:intron | 10.0% |
| !! | AAAAAAAAATACTACCTAAA+AGG | - | chr5.4:20305742-20305761 | MS.gene027896:intron | 15.0% |
| !! | AAAAAAAATACTACCTAAAA+GGG | - | chr5.4:20305743-20305762 | MS.gene027896:intron | 15.0% |
| !! | AAAATTATGAAAAAGAAACA+CGG | + | chr5.4:20307114-20307133 | None:intergenic | 15.0% |
| !! | ATTTGATATAGTTATTGTAT+AGG | - | chr5.4:20308637-20308656 | MS.gene027896:intron | 15.0% |
| !! | GTTTATTCTTATATACAATT+TGG | - | chr5.4:20309055-20309074 | MS.gene027896:intron | 15.0% |
| !!! | ATGAATAATATCTAAAACAT+AGG | + | chr5.4:20305348-20305367 | None:intergenic | 15.0% |
| !!! | ATTAAAGATTTTTTTCAACA+AGG | + | chr5.4:20306456-20306475 | None:intergenic | 15.0% |
| !!! | ATTTTGATTTTTGTATCTTT+AGG | - | chr5.4:20306678-20306697 | MS.gene027896:intron | 15.0% |
| !!! | TGTTTCTTTTTCATAATTTT+GGG | - | chr5.4:20307114-20307133 | MS.gene027896:intron | 15.0% |
| !! | AAAAATTACCATACAGTAAA+AGG | + | chr5.4:20308381-20308400 | None:intergenic | 20.0% |
| !! | AAATAATCTTATCACCTAAA+AGG | - | chr5.4:20305703-20305722 | MS.gene027896:intron | 20.0% |
| !! | AAATTATGAAAAAGAAACAC+GGG | + | chr5.4:20307113-20307132 | None:intergenic | 20.0% |
| !! | AATAATCTTATCACCTAAAA+GGG | - | chr5.4:20305704-20305723 | MS.gene027896:intron | 20.0% |
| !! | AGATAAATGTAGAAAAGTAA+AGG | + | chr5.4:20307037-20307056 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAATAGATGCG+AGG | + | chr5.4:20304589-20304608 | None:intergenic | 20.0% |
| !! | ATGATGAATCTTCTTTATAA+TGG | - | chr5.4:20304646-20304665 | MS.gene027896:CDS | 20.0% |
| !! | GAGATATAATATATACAGAA+AGG | + | chr5.4:20305830-20305849 | None:intergenic | 20.0% |
| !! | GGTTTATAACATTAAAATTG+TGG | + | chr5.4:20307578-20307597 | None:intergenic | 20.0% |
| !! | GTTTAAAGATTATAGACTAA+TGG | + | chr5.4:20306648-20306667 | None:intergenic | 20.0% |
| !! | TAAGACTCAATAATATTGTT+TGG | - | chr5.4:20306778-20306797 | MS.gene027896:intron | 20.0% |
| !! | TACTAAAATGTAAAAACTAG+AGG | - | chr5.4:20305577-20305596 | MS.gene027896:intron | 20.0% |
| !! | TATTAAGAAATTCAATCCTA+TGG | - | chr5.4:20308687-20308706 | MS.gene027896:intron | 20.0% |
| !! | TCAATAATATTGTTTGGATT+TGG | - | chr5.4:20306784-20306803 | MS.gene027896:intron | 20.0% |
| !! | TTATAACATTAAAATTGTGG+AGG | + | chr5.4:20307575-20307594 | None:intergenic | 20.0% |
| !! | TTATTTATGTTATGAACTTC+TGG | + | chr5.4:20305689-20305708 | None:intergenic | 20.0% |
| !! | TTGAGACAAATTGATATTAA+TGG | - | chr5.4:20306420-20306439 | MS.gene027896:intron | 20.0% |
| !!! | AAAACATATGTTAATTTGGT+TGG | - | chr5.4:20305531-20305550 | MS.gene027896:intron | 20.0% |
| !!! | AAACATATGTTAATTTGGTT+GGG | - | chr5.4:20305532-20305551 | MS.gene027896:intron | 20.0% |
| !!! | AAACTTCATGTTTATAGTTT+TGG | + | chr5.4:20307833-20307852 | None:intergenic | 20.0% |
| !!! | AACCAAATTAACATATGTTT+TGG | + | chr5.4:20305532-20305551 | None:intergenic | 20.0% |
| !!! | AACTAAAATGGACATTTTAA+AGG | + | chr5.4:20305806-20305825 | None:intergenic | 20.0% |
| !!! | ATAAAGAAGATTCATCATTT+TGG | + | chr5.4:20304644-20304663 | None:intergenic | 20.0% |
| !!! | ATTCATTTTTCATTCAACTT+CGG | + | chr5.4:20305927-20305946 | None:intergenic | 20.0% |
| !!! | CTTAATTTTAATTTGGATTG+TGG | - | chr5.4:20309030-20309049 | MS.gene027896:intron | 20.0% |
| !!! | GTGTTTCTTTTTCATAATTT+TGG | - | chr5.4:20307113-20307132 | MS.gene027896:intron | 20.0% |
| !!! | TAGCATGCTTAATTTTAATT+TGG | - | chr5.4:20309023-20309042 | MS.gene027896:intron | 20.0% |
| !!! | TGTTCAAGATATGTATTTTA+TGG | - | chr5.4:20306724-20306743 | MS.gene027896:intron | 20.0% |
| ! | AATTATGAAAAAGAAACACG+GGG | + | chr5.4:20307112-20307131 | None:intergenic | 25.0% |
| ! | ATACAGAAAGGAAACTAAAA+TGG | + | chr5.4:20305818-20305837 | None:intergenic | 25.0% |
| ! | ATAGACTAATGGTGTAAAAA+CGG | + | chr5.4:20306637-20306656 | None:intergenic | 25.0% |
| ! | ATAGTTATTGTATAGGAGTT+TGG | - | chr5.4:20308644-20308663 | MS.gene027896:intron | 25.0% |
| ! | ATTATATCACACTTCTTTGA+GGG | + | chr5.4:20305644-20305663 | None:intergenic | 25.0% |
| ! | CAACAAATATGGAAAATAAG+AGG | + | chr5.4:20305444-20305463 | None:intergenic | 25.0% |
| ! | CACACAATTTGAATGATATA+TGG | + | chr5.4:20305966-20305985 | None:intergenic | 25.0% |
| ! | CATATGTAAATAAATAGCAG+AGG | + | chr5.4:20306349-20306368 | None:intergenic | 25.0% |
| ! | GAATAGGAAATCATATGAAT+AGG | - | chr5.4:20308949-20308968 | MS.gene027896:intron | 25.0% |
| ! | GTGTCATGTAATTGAAAATT+GGG | - | chr5.4:20308143-20308162 | MS.gene027896:intron | 25.0% |
| ! | TAATATTGTTTGGATTTGGA+TGG | - | chr5.4:20306788-20306807 | MS.gene027896:intron | 25.0% |
| ! | TACAATGAATTTGGTTATGT+TGG | - | chr5.4:20308075-20308094 | MS.gene027896:intron | 25.0% |
| ! | TACATCCTTGTATTATAGTA+TGG | - | chr5.4:20308763-20308782 | MS.gene027896:intron | 25.0% |
| ! | TATATCATTCAAATTGTGTG+TGG | - | chr5.4:20305966-20305985 | MS.gene027896:intron | 25.0% |
| ! | TGCCAAAACATATGTTAATT+TGG | - | chr5.4:20305527-20305546 | MS.gene027896:intron | 25.0% |
| ! | TGTGTCATGTAATTGAAAAT+TGG | - | chr5.4:20308142-20308161 | MS.gene027896:intron | 25.0% |
| ! | TTCCTTATATAGAAGTGAAT+TGG | - | chr5.4:20308400-20308419 | MS.gene027896:intron | 25.0% |
| ! | TTGTTGTGATACAATGAATT+TGG | - | chr5.4:20308066-20308085 | MS.gene027896:intron | 25.0% |
| ! | TTTAATGACATCTAATTGTC+TGG | - | chr5.4:20305996-20306015 | MS.gene027896:intron | 25.0% |
| ! | TTTACTAACAAAGCACATAA+GGG | - | chr5.4:20307853-20307872 | MS.gene027896:CDS | 25.0% |
| ! | TTTGAATGATTGTTAAGTTC+AGG | - | chr5.4:20307285-20307304 | MS.gene027896:intron | 25.0% |
| !! | ATATAAGCATACAACTTTTG+TGG | - | chr5.4:20306916-20306935 | MS.gene027896:intron | 25.0% |
| !! | CAAGTAGATATTATTTGTTG+AGG | - | chr5.4:20308904-20308923 | MS.gene027896:intron | 25.0% |
| !! | GTTTAAAACAAAAGCAACAT+TGG | + | chr5.4:20307255-20307274 | None:intergenic | 25.0% |
| !! | TGGATTTGTTTCTTATCATA+CGG | - | chr5.4:20306251-20306270 | MS.gene027896:intron | 25.0% |
| !! | TTTTACTAACAAAGCACATA+AGG | - | chr5.4:20307852-20307871 | MS.gene027896:CDS | 25.0% |
| !!! | AATTTTAATTTGGATTGTGG+AGG | - | chr5.4:20309033-20309052 | MS.gene027896:intron | 25.0% |
| !!! | ACTCTAGTGATCTTTAAAAT+CGG | - | chr5.4:20307069-20307088 | MS.gene027896:intron | 25.0% |
| !!! | ATAGTTTTGGTTGAATCAAA+GGG | + | chr5.4:20307820-20307839 | None:intergenic | 25.0% |
| !!! | TATAGTTTTGGTTGAATCAA+AGG | + | chr5.4:20307821-20307840 | None:intergenic | 25.0% |
| !!! | TGTTGCTTTTGTTTTAAACT+AGG | - | chr5.4:20307256-20307275 | MS.gene027896:intron | 25.0% |
| !!! | TTCAGAATTAAGAGTATTAG+AGG | + | chr5.4:20305315-20305334 | None:intergenic | 25.0% |
| AAGAAAACACTTAAAGAAGC+TGG | - | chr5.4:20309302-20309321 | MS.gene027896:intron | 30.0% | |
| ACAGATAAATTGCATTTGCA+TGG | - | chr5.4:20307395-20307414 | MS.gene027896:intron | 30.0% | |
| ACTTGTGAAATGTTGCATTT+GGG | - | chr5.4:20307220-20307239 | MS.gene027896:intron | 30.0% | |
| ACTTTCTCTTCAACAATTTC+TGG | + | chr5.4:20309404-20309423 | None:intergenic | 30.0% | |
| AGTAAAGAATGAAACCAGAT+AGG | + | chr5.4:20309123-20309142 | None:intergenic | 30.0% | |
| AGTTATCATCTCATTGTTCA+TGG | - | chr5.4:20306317-20306336 | MS.gene027896:intron | 30.0% | |
| ATAGAAAATGCAGAAACAGT+GGG | - | chr5.4:20308737-20308756 | MS.gene027896:intron | 30.0% | |
| ATATGAATAGGCTTGTCTTA+AGG | - | chr5.4:20308961-20308980 | MS.gene027896:intron | 30.0% | |
| ATATGTGACTAATAAGGCTA+TGG | - | chr5.4:20308169-20308188 | MS.gene027896:intron | 30.0% | |
| ATGTGAGTAATAACCAATTG+AGG | - | chr5.4:20308271-20308290 | MS.gene027896:intron | 30.0% | |
| ATGTTAGTGTATTTGTGCTA+GGG | - | chr5.4:20305366-20305385 | MS.gene027896:intron | 30.0% | |
| ATTGTTAAGTTCAGGTATGT+AGG | - | chr5.4:20307293-20307312 | MS.gene027896:intron | 30.0% | |
| CTGTGAAGTTTAGTTATTTG+AGG | - | chr5.4:20305487-20305506 | MS.gene027896:intron | 30.0% | |
| GATTATATCACACTTCTTTG+AGG | + | chr5.4:20305645-20305664 | None:intergenic | 30.0% | |
| GCCTATATCAAAAAAGTAAG+CGG | + | chr5.4:20308024-20308043 | None:intergenic | 30.0% | |
| GGAGATATAAAGGCTAAATA+TGG | - | chr5.4:20306937-20306956 | MS.gene027896:intron | 30.0% | |
| TAATAACCAATTGAGGCTTA+TGG | - | chr5.4:20308278-20308297 | MS.gene027896:intron | 30.0% | |
| TCAAATAGCCAAGTATAGTT+TGG | + | chr5.4:20306814-20306833 | None:intergenic | 30.0% | |
| TCCAAAATGATGTGATTCTT+TGG | + | chr5.4:20304712-20304731 | None:intergenic | 30.0% | |
| TGATCACCATGAAAACATAT+TGG | + | chr5.4:20307188-20307207 | None:intergenic | 30.0% | |
| TGCCAATTCACTTCTATATA+AGG | + | chr5.4:20308405-20308424 | None:intergenic | 30.0% | |
| TGGTCGATAATATGAGATAA+AGG | + | chr5.4:20304863-20304882 | None:intergenic | 30.0% | |
| TTTCTATCTGCTCTAATACA+TGG | + | chr5.4:20308724-20308743 | None:intergenic | 30.0% | |
| ! | ACCAAAGAATCACATCATTT+TGG | - | chr5.4:20304708-20304727 | MS.gene027896:intron | 30.0% |
| ! | AGTGTTTTCCTTTTACTGTA+TGG | - | chr5.4:20308370-20308389 | MS.gene027896:intron | 30.0% |
| ! | ATTTGTTTCTTATCATACGG+AGG | - | chr5.4:20306254-20306273 | MS.gene027896:intron | 30.0% |
| ! | CAACTTTTGTGGAGATATAA+AGG | - | chr5.4:20306927-20306946 | MS.gene027896:intron | 30.0% |
| ! | GATTTCTTGTTTGGTTGAAT+AGG | - | chr5.4:20308933-20308952 | MS.gene027896:intron | 30.0% |
| ! | TAATAGGCTAAATCCCTTTT+AGG | + | chr5.4:20305720-20305739 | None:intergenic | 30.0% |
| ! | TTGCAAGCATTTTGTTAAAG+AGG | + | chr5.4:20308887-20308906 | None:intergenic | 30.0% |
| !! | GTATTTCATTCGGTTTTGAT+GGG | - | chr5.4:20307982-20308001 | MS.gene027896:intron | 30.0% |
| !! | TAATTTTGGGTCAGAGTAAA+TGG | - | chr5.4:20307127-20307146 | MS.gene027896:intron | 30.0% |
| !!! | ACCGCTTACTTTTTTGATAT+AGG | - | chr5.4:20308020-20308039 | MS.gene027896:intron | 30.0% |
| !!! | TCACTTATTTTTACGAGAAG+TGG | + | chr5.4:20309281-20309300 | None:intergenic | 30.0% |
| AATGTTATAAACCCTAACCC+AGG | - | chr5.4:20307585-20307604 | MS.gene027896:intron | 35.0% | |
| ACAAATCTAACACCTCAAGA+AGG | + | chr5.4:20304943-20304962 | None:intergenic | 35.0% | |
| ACACCATTGTGAGATATGAT+TGG | - | chr5.4:20306598-20306617 | MS.gene027896:intron | 35.0% | |
| ACTAGTGAGTGCAACAAATA+TGG | + | chr5.4:20305455-20305474 | None:intergenic | 35.0% | |
| AGAGCTTCAACAAAACACTT+GGG | + | chr5.4:20309085-20309104 | None:intergenic | 35.0% | |
| AGGATGCATGATTTCTTGTT+TGG | - | chr5.4:20308924-20308943 | MS.gene027896:intron | 35.0% | |
| ATAGAAGTGAATTGGCACTA+CGG | - | chr5.4:20308408-20308427 | MS.gene027896:intron | 35.0% | |
| ATGTTATAAACCCTAACCCA+GGG | - | chr5.4:20307586-20307605 | MS.gene027896:intron | 35.0% | |
| ATTACATAACGTGCTTCCTT+AGG | + | chr5.4:20306105-20306124 | None:intergenic | 35.0% | |
| CAAGCTAAGTGAAAATCAGA+AGG | + | chr5.4:20307005-20307024 | None:intergenic | 35.0% | |
| CAATTGAGGCTTATGGAAAA+GGG | - | chr5.4:20308285-20308304 | MS.gene027896:intron | 35.0% | |
| CACTTGTGAAATGTTGCATT+TGG | - | chr5.4:20307219-20307238 | MS.gene027896:intron | 35.0% | |
| CATATTGGTGCAGAAAATAC+TGG | + | chr5.4:20307173-20307192 | None:intergenic | 35.0% | |
| CATGGATAACAAAACACCAT+AGG | + | chr5.4:20308706-20308725 | None:intergenic | 35.0% | |
| CATGGCGAGAAAAAATTGTA+TGG | + | chr5.4:20306535-20306554 | None:intergenic | 35.0% | |
| CATGTTAGTGTATTTGTGCT+AGG | - | chr5.4:20305365-20305384 | MS.gene027896:intron | 35.0% | |
| CCACACATTTATGTATTTCG+GGG | - | chr5.4:20305223-20305242 | MS.gene027896:intron | 35.0% | |
| CCCACACATTTATGTATTTC+GGG | - | chr5.4:20305222-20305241 | MS.gene027896:intron | 35.0% | |
| CCCCACACATTTATGTATTT+CGG | - | chr5.4:20305221-20305240 | MS.gene027896:intron | 35.0% | |
| CCCGAAATACATAAATGTGT+GGG | + | chr5.4:20305225-20305244 | None:intergenic | 35.0% | |
| CCGAAATACATAAATGTGTG+GGG | + | chr5.4:20305224-20305243 | None:intergenic | 35.0% | |
| CGAAATACATAAATGTGTGG+GGG | + | chr5.4:20305223-20305242 | None:intergenic | 35.0% | |
| CGTATACAAACAGATATGAG+CGG | - | chr5.4:20305277-20305296 | MS.gene027896:intron | 35.0% | |
| CTCTAGCAAAAAACTTCCAA+CGG | - | chr5.4:20305847-20305866 | MS.gene027896:intron | 35.0% | |
| CTTCAGAACAAACAAACAAG+AGG | + | chr5.4:20309159-20309178 | None:intergenic | 35.0% | |
| CTTCCAATCATATCTCACAA+TGG | + | chr5.4:20306604-20306623 | None:intergenic | 35.0% | |
| GAGCTCCATACTATAATACA+AGG | + | chr5.4:20308771-20308790 | None:intergenic | 35.0% | |
| GATAGAAAATGCAGAAACAG+TGG | - | chr5.4:20308736-20308755 | MS.gene027896:intron | 35.0% | |
| GCTTCATAAGTATTTCACCT+GGG | + | chr5.4:20304909-20304928 | None:intergenic | 35.0% | |
| GGTGAAATACTTATGAAGCA+TGG | - | chr5.4:20304910-20304929 | MS.gene027896:intron | 35.0% | |
| GTATCTTTAGGCAGAACTTT+AGG | - | chr5.4:20306690-20306709 | MS.gene027896:intron | 35.0% | |
| TGCTTCATAAGTATTTCACC+TGG | + | chr5.4:20304910-20304929 | None:intergenic | 35.0% | |
| TGTCTAGGTTATAGCTGTAT+TGG | - | chr5.4:20306835-20306854 | MS.gene027896:intron | 35.0% | |
| TTCTTTAATTGAGCTGTGAG+AGG | - | chr5.4:20308597-20308616 | MS.gene027896:intron | 35.0% | |
| ! | AGGCTTGAATTTTGCAAACA+AGG | - | chr5.4:20308040-20308059 | MS.gene027896:intron | 35.0% |
| ! | AGTGACATAACATCCCTTTT+AGG | + | chr5.4:20305759-20305778 | None:intergenic | 35.0% |
| ! | GTATGTTTGTCTGTTCTGAA+TGG | - | chr5.4:20304616-20304635 | MS.gene027896:CDS | 35.0% |
| ! | TCTGCACCAATATGTTTTCA+TGG | - | chr5.4:20307179-20307198 | MS.gene027896:intron | 35.0% |
| ! | TGTTAATTTGGTTGGGACTA+TGG | - | chr5.4:20305539-20305558 | MS.gene027896:intron | 35.0% |
| ! | TTATTGGTGCTTTGACATGT+CGG | + | chr5.4:20306972-20306991 | None:intergenic | 35.0% |
| !! | AAGAAGCATCTGTGTATTCA+GGG | - | chr5.4:20307513-20307532 | MS.gene027896:intron | 35.0% |
| !! | GGTATTTCATTCGGTTTTGA+TGG | - | chr5.4:20307981-20308000 | MS.gene027896:intron | 35.0% |
| !! | GTTTTGAGTGGTTGGATATA+TGG | - | chr5.4:20306867-20306886 | MS.gene027896:intron | 35.0% |
| !! | TCACATGTTTTTAATGCACG+CGG | - | chr5.4:20305663-20305682 | MS.gene027896:intron | 35.0% |
| !! | TTTGTAGTGTTTTGAGTGGT+TGG | - | chr5.4:20306859-20306878 | MS.gene027896:intron | 35.0% |
| !!! | GCTATTTCTCAGGGTATTTT+AGG | - | chr5.4:20306557-20306576 | MS.gene027896:intron | 35.0% |
| !!! | TCACATCATTTTGGAACTCT+TGG | - | chr5.4:20304717-20304736 | MS.gene027896:intron | 35.0% |
| !!! | TGGTTTTGTAGTGTTTTGAG+TGG | - | chr5.4:20306855-20306874 | MS.gene027896:intron | 35.0% |
| AAAATGAGTTTCCCTGGGTT+AGG | + | chr5.4:20307600-20307619 | None:intergenic | 40.0% | |
| AAACGCAAAATGAGTTTCCC+TGG | + | chr5.4:20307606-20307625 | None:intergenic | 40.0% | |
| AAACGGTCAATGACACATGT+TGG | + | chr5.4:20307721-20307740 | None:intergenic | 40.0% | |
| AAAGGAGTTGCGAGTCATAA+GGG | + | chr5.4:20304845-20304864 | None:intergenic | 40.0% | |
| AAATACCGCCAAAAGGAACA+AGG | + | chr5.4:20307968-20307987 | None:intergenic | 40.0% | |
| AAATATCAGGCCGGATAGTA+AGG | - | chr5.4:20306025-20306044 | MS.gene027896:intron | 40.0% | |
| AAATGAGTTTCCCTGGGTTA+GGG | + | chr5.4:20307599-20307618 | None:intergenic | 40.0% | |
| AACGCAAAATGAGTTTCCCT+GGG | + | chr5.4:20307605-20307624 | None:intergenic | 40.0% | |
| AAGTGAAAATCAGAAGGTGG+TGG | + | chr5.4:20306999-20307018 | None:intergenic | 40.0% | |
| AATATCAGGCCGGATAGTAA+GGG | - | chr5.4:20306026-20306045 | MS.gene027896:intron | 40.0% | |
| AATTAGACAGGAAACGAGAG+TGG | + | chr5.4:20304979-20304998 | None:intergenic | 40.0% | |
| AATTGAGCTGTGAGAGGATA+AGG | - | chr5.4:20308603-20308622 | MS.gene027896:intron | 40.0% | |
| AATTGGCACTACGGTGAATA+AGG | - | chr5.4:20308417-20308436 | MS.gene027896:intron | 40.0% | |
| ACAATGCAGCACATACACAA+AGG | + | chr5.4:20307691-20307710 | None:intergenic | 40.0% | |
| ACTTGGCTATTTGAGTGTCT+AGG | - | chr5.4:20306820-20306839 | MS.gene027896:intron | 40.0% | |
| ACTTTCTCTCCAACAACTTC+TGG | + | chr5.4:20309332-20309351 | None:intergenic | 40.0% | |
| AGCTTCAACAAAACACTTGG+GGG | + | chr5.4:20309083-20309102 | None:intergenic | 40.0% | |
| AGTAAGGGTAGAGTTTGCAA+AGG | - | chr5.4:20306041-20306060 | MS.gene027896:intron | 40.0% | |
| ATGTGAGCATTCGTTATGTG+AGG | - | chr5.4:20308535-20308554 | MS.gene027896:intron | 40.0% | |
| ATTGATGCTTTCCCTTTCAC+TGG | + | chr5.4:20308253-20308272 | None:intergenic | 40.0% | |
| CAAACTCTACCCTTACTATC+CGG | + | chr5.4:20306038-20306057 | None:intergenic | 40.0% | |
| CAAAGCACATAAGGGAAAGA+AGG | - | chr5.4:20307861-20307880 | MS.gene027896:CDS | 40.0% | |
| CAATGCAGCACATACACAAA+GGG | + | chr5.4:20307690-20307709 | None:intergenic | 40.0% | |
| CAGAGCTTCAACAAAACACT+TGG | + | chr5.4:20309086-20309105 | None:intergenic | 40.0% | |
| CAGAGCTTCTTAGGGATATA+GGG | - | chr5.4:20307537-20307556 | MS.gene027896:intron | 40.0% | |
| CATAAGTATTTCACCTGGGA+GGG | + | chr5.4:20304905-20304924 | None:intergenic | 40.0% | |
| CATAGCATCATCTCTATTCC+TGG | + | chr5.4:20305886-20305905 | None:intergenic | 40.0% | |
| CCAATTGAGGCTTATGGAAA+AGG | - | chr5.4:20308284-20308303 | MS.gene027896:intron | 40.0% | |
| CCCCGAAATACATAAATGTG+TGG | + | chr5.4:20305226-20305245 | None:intergenic | 40.0% | |
| CGATTGTGTGTATTCCTATC+TGG | - | chr5.4:20309106-20309125 | MS.gene027896:intron | 40.0% | |
| GACGTCAATTGAGATAGAAG+TGG | - | chr5.4:20307353-20307372 | MS.gene027896:intron | 40.0% | |
| GAGCTTCAACAAAACACTTG+GGG | + | chr5.4:20309084-20309103 | None:intergenic | 40.0% | |
| GATGCTTCTTCTAACTCCTT+CGG | + | chr5.4:20307503-20307522 | None:intergenic | 40.0% | |
| GCTAAGTGAAAATCAGAAGG+TGG | + | chr5.4:20307002-20307021 | None:intergenic | 40.0% | |
| GGGTGCATATGTGACTAATA+AGG | - | chr5.4:20308163-20308182 | MS.gene027896:intron | 40.0% | |
| GTAAGGGTAGAGTTTGCAAA+GGG | - | chr5.4:20306042-20306061 | MS.gene027896:intron | 40.0% | |
| TAAAGGAGTTGCGAGTCATA+AGG | + | chr5.4:20304846-20304865 | None:intergenic | 40.0% | |
| TACCCTGAGAAATAGCTACA+TGG | + | chr5.4:20306553-20306572 | None:intergenic | 40.0% | |
| TCATAAGTATTTCACCTGGG+AGG | + | chr5.4:20304906-20304925 | None:intergenic | 40.0% | |
| TCTGCAATATGCCAGTGAAA+GGG | - | chr5.4:20308239-20308258 | MS.gene027896:intron | 40.0% | |
| TGGATGCATCATAAGGAGTT+GGG | - | chr5.4:20308212-20308231 | MS.gene027896:intron | 40.0% | |
| TGTGACTAATAAGGCTATGG+TGG | - | chr5.4:20308172-20308191 | MS.gene027896:intron | 40.0% | |
| TGTTTCTTATCATACGGAGG+AGG | - | chr5.4:20306257-20306276 | MS.gene027896:intron | 40.0% | |
| TTACTAGCGTACTGAGATAC+AGG | - | chr5.4:20308794-20308813 | MS.gene027896:intron | 40.0% | |
| TTGGATGGCCAAACTATACT+TGG | - | chr5.4:20306803-20306822 | MS.gene027896:intron | 40.0% | |
| TTTGGCATAGCATGTTCAAC+TGG | + | chr5.4:20305514-20305533 | None:intergenic | 40.0% | |
| ! | CCTTTTCCATAAGCCTCAAT+TGG | + | chr5.4:20308287-20308306 | None:intergenic | 40.0% |
| ! | CCTTTTGGCGGTATTTCATT+CGG | - | chr5.4:20307972-20307991 | MS.gene027896:intron | 40.0% |
| ! | GACATCTAATTGTCTGGTTC+AGG | - | chr5.4:20306002-20306021 | MS.gene027896:intron | 40.0% |
| ! | TGTCTGGTTCAGGAAATATC+AGG | - | chr5.4:20306012-20306031 | MS.gene027896:intron | 40.0% |
| !! | AGAAGCATCTGTGTATTCAG+GGG | - | chr5.4:20307514-20307533 | MS.gene027896:intron | 40.0% |
| !! | CTACTAAAGCGTGCTATTTG+TGG | - | chr5.4:20308836-20308855 | MS.gene027896:intron | 40.0% |
| !! | GAAGAAGCATCTGTGTATTC+AGG | - | chr5.4:20307512-20307531 | MS.gene027896:intron | 40.0% |
| !! | TTGCTCTGAGTGTTTTGCTT+AGG | - | chr5.4:20307904-20307923 | MS.gene027896:CDS | 40.0% |
| !!! | GCTTTTTCGACACTCAACTA+TGG | - | chr5.4:20305034-20305053 | MS.gene027896:intron | 40.0% |
| AAGGAGTTGCGAGTCATAAG+GGG | + | chr5.4:20304844-20304863 | None:intergenic | 45.0% | |
| ACATACACAAAGGGACAGAG+TGG | + | chr5.4:20307681-20307700 | None:intergenic | 45.0% | |
| AGAGGAGAGGCAGATTCAAA+GGG | + | chr5.4:20307771-20307790 | None:intergenic | 45.0% | |
| AGCCTGAATTTCATGTCCGA+AGG | - | chr5.4:20307484-20307503 | MS.gene027896:intron | 45.0% | |
| AGCTTCTTAGGGATATAGGG+TGG | - | chr5.4:20307540-20307559 | MS.gene027896:intron | 45.0% | |
| AGGCAGATTCAAAGGGAGAA+CGG | + | chr5.4:20307764-20307783 | None:intergenic | 45.0% | |
| AGGCTATGGTGGTAAGAATG+TGG | - | chr5.4:20308183-20308202 | MS.gene027896:intron | 45.0% | |
| AGGGATGTTATGTCACTCTG+CGG | - | chr5.4:20305762-20305781 | MS.gene027896:intron | 45.0% | |
| AGTAACTCCTGCAAAGGGAT+AGG | + | chr5.4:20309251-20309270 | None:intergenic | 45.0% | |
| ATAACGTGCTTCCTTAGGAG+TGG | + | chr5.4:20306100-20306119 | None:intergenic | 45.0% | |
| ATCCCTTTGCAGGAGTTACT+GGG | - | chr5.4:20309251-20309270 | MS.gene027896:intron | 45.0% | |
| ATGCATCATAAGGAGTTGGG+AGG | - | chr5.4:20308215-20308234 | MS.gene027896:intron | 45.0% | |
| ATTTGTGCTAGGGTTGTGTC+TGG | - | chr5.4:20305376-20305395 | MS.gene027896:intron | 45.0% | |
| CAAAACACCAGTTTCAGCCA+GGG | - | chr5.4:20306191-20306210 | MS.gene027896:intron | 45.0% | |
| CATTTCTGCTTTGCAAGGGA+AGG | - | chr5.4:20306293-20306312 | MS.gene027896:intron | 45.0% | |
| CCGAATGAAATACCGCCAAA+AGG | + | chr5.4:20307975-20307994 | None:intergenic | 45.0% | |
| CTCCTTCGGACATGAAATTC+AGG | + | chr5.4:20307489-20307508 | None:intergenic | 45.0% | |
| CTTCCCTTGCAAAGCAGAAA+TGG | + | chr5.4:20306295-20306314 | None:intergenic | 45.0% | |
| GACATAGACTGTGCAATGCA+AGG | - | chr5.4:20304668-20304687 | MS.gene027896:CDS | 45.0% | |
| GCAGAGCTTCTTAGGGATAT+AGG | - | chr5.4:20307536-20307555 | MS.gene027896:intron | 45.0% | |
| GCTGGAAGTGAAGAAGTTGT+TGG | - | chr5.4:20309320-20309339 | MS.gene027896:intron | 45.0% | |
| GGCTATGGTGGTAAGAATGT+GGG | - | chr5.4:20308184-20308203 | MS.gene027896:intron | 45.0% | |
| GTCTGCAATATGCCAGTGAA+AGG | - | chr5.4:20308238-20308257 | MS.gene027896:intron | 45.0% | |
| GTGGATGCATCATAAGGAGT+TGG | - | chr5.4:20308211-20308230 | MS.gene027896:intron | 45.0% | |
| TAAAATTGTGGAGGTGACCG+CGG | + | chr5.4:20307566-20307585 | None:intergenic | 45.0% | |
| TAACGTGCTTCCTTAGGAGT+GGG | + | chr5.4:20306099-20306118 | None:intergenic | 45.0% | |
| TAGATCTTGCTTTCCACGCA+AGG | + | chr5.4:20306140-20306159 | None:intergenic | 45.0% | |
| TATCCCTTTGCAGGAGTTAC+TGG | - | chr5.4:20309250-20309269 | MS.gene027896:intron | 45.0% | |
| TCAAAACACCAGTTTCAGCC+AGG | - | chr5.4:20306190-20306209 | MS.gene027896:intron | 45.0% | |
| TCTGTTACCTATCCCTTTGC+AGG | - | chr5.4:20309241-20309260 | MS.gene027896:intron | 45.0% | |
| TGAGGCTTATGGAAAAGGGT+GGG | - | chr5.4:20308289-20308308 | MS.gene027896:intron | 45.0% | |
| TGCATCATAAGGAGTTGGGA+GGG | - | chr5.4:20308216-20308235 | MS.gene027896:intron | 45.0% | |
| TGGAGCTTAGTTTAGTCCGT+TGG | + | chr5.4:20305866-20305885 | None:intergenic | 45.0% | |
| TGGTTCAGGAAATATCAGGC+CGG | - | chr5.4:20306016-20306035 | MS.gene027896:intron | 45.0% | |
| TTCGACACTCAACTATGGCT+TGG | - | chr5.4:20305039-20305058 | MS.gene027896:intron | 45.0% | |
| TTCGGGGAATCACAAATCAG+AGG | - | chr5.4:20305239-20305258 | MS.gene027896:intron | 45.0% | |
| TTGAAGCACGAAGACAACTG+TGG | + | chr5.4:20305405-20305424 | None:intergenic | 45.0% | |
| TTGAGGCTTATGGAAAAGGG+TGG | - | chr5.4:20308288-20308307 | MS.gene027896:intron | 45.0% | |
| TTGTCTTTCAAACCCCTGGT+GGG | - | chr5.4:20306214-20306233 | MS.gene027896:intron | 45.0% | |
| ! | CTGCCATTTCTGCTTTGCAA+GGG | - | chr5.4:20306289-20306308 | MS.gene027896:intron | 45.0% |
| !! | AACGGACTAAACTAAGCTCC+AGG | - | chr5.4:20305865-20305884 | MS.gene027896:intron | 45.0% |
| !! | ACTCAACTATGGCTTGGTAC+AGG | - | chr5.4:20305045-20305064 | MS.gene027896:intron | 45.0% |
| !! | AGAAGGTGGTGGACGTTTAT+TGG | + | chr5.4:20306988-20307007 | None:intergenic | 45.0% |
| !! | CGCCATGTAGCTATTTCTCA+GGG | - | chr5.4:20306548-20306567 | MS.gene027896:intron | 45.0% |
| !! | TCGCCATGTAGCTATTTCTC+AGG | - | chr5.4:20306547-20306566 | MS.gene027896:intron | 45.0% |
| !! | AAAAATGAATATAAAAATAT+TGG | - | chr5.4:20305937-20305956 | MS.gene027896:intron | 5.0% |
| !!! | AATTAAATAATTAATTTTAC+TGG | - | chr5.4:20304995-20305014 | MS.gene027896:intron | 5.0% |
| !!! | ATCTATTTTTATTTTATTTT+TGG | - | chr5.4:20304592-20304611 | MS.gene027896:CDS | 5.0% |
| !!! | TAGTATTTTTTTTTTTTAAT+AGG | + | chr5.4:20305736-20305755 | None:intergenic | 5.0% |
| AAATGCAGTGGGTAGACGGA+GGG | + | chr5.4:20307644-20307663 | None:intergenic | 50.0% | |
| AAGACAACCCTGGCTGAAAC+TGG | + | chr5.4:20306201-20306220 | None:intergenic | 50.0% | |
| ACGCAAATGCAGTGGGTAGA+CGG | + | chr5.4:20307648-20307667 | None:intergenic | 50.0% | |
| AGGGGTTTGAAAGACAACCC+TGG | + | chr5.4:20306211-20306230 | None:intergenic | 50.0% | |
| AGGGTTGTCTTTCAAACCCC+TGG | - | chr5.4:20306210-20306229 | MS.gene027896:intron | 50.0% | |
| ATCGCGCACACAGAGCTAAA+CGG | + | chr5.4:20307738-20307757 | None:intergenic | 50.0% | |
| ATGGAAAAGGGTGGGGACAT+AGG | - | chr5.4:20308297-20308316 | MS.gene027896:intron | 50.0% | |
| ATTCAGGGGCAGAGCTTCTT+AGG | - | chr5.4:20307528-20307547 | MS.gene027896:intron | 50.0% | |
| CAGAGGAGAGGCAGATTCAA+AGG | + | chr5.4:20307772-20307791 | None:intergenic | 50.0% | |
| CATGGCACTTCTCCTTCTTG+AGG | - | chr5.4:20304928-20304947 | MS.gene027896:intron | 50.0% | |
| GACGCTCAACCAGAAGTTGT+TGG | - | chr5.4:20309356-20309375 | MS.gene027896:intron | 50.0% | |
| GAGAGGATAAGGCGTGTGTA+TGG | - | chr5.4:20308614-20308633 | MS.gene027896:intron | 50.0% | |
| GAGGCTTATGGAAAAGGGTG+GGG | - | chr5.4:20308290-20308309 | MS.gene027896:intron | 50.0% | |
| GATGTTATGTCACTCTGCGG+TGG | - | chr5.4:20305765-20305784 | MS.gene027896:intron | 50.0% | |
| GTCCCAGTAACTCCTGCAAA+GGG | + | chr5.4:20309256-20309275 | None:intergenic | 50.0% | |
| GTTGTCTTTCAAACCCCTGG+TGG | - | chr5.4:20306213-20306232 | MS.gene027896:intron | 50.0% | |
| TAGACAGGAAACGAGAGTGG+CGG | + | chr5.4:20304976-20304995 | None:intergenic | 50.0% | |
| TCTATGCATCCAACCTTGCG+TGG | - | chr5.4:20306124-20306143 | MS.gene027896:intron | 50.0% | |
| TCTTGCTTTCCACGCAAGGT+TGG | + | chr5.4:20306136-20306155 | None:intergenic | 50.0% | |
| TGGAAAAGGGTGGGGACATA+GGG | - | chr5.4:20308298-20308317 | MS.gene027896:intron | 50.0% | |
| TGGCACTACGGTGAATAAGG+AGG | - | chr5.4:20308420-20308439 | MS.gene027896:intron | 50.0% | |
| TGGTAAGAATGTGGGCTTGG+TGG | - | chr5.4:20308192-20308211 | MS.gene027896:intron | 50.0% | |
| TGGTGGTAAGAATGTGGGCT+TGG | - | chr5.4:20308189-20308208 | MS.gene027896:intron | 50.0% | |
| TTCAGGGGCAGAGCTTCTTA+GGG | - | chr5.4:20307529-20307548 | MS.gene027896:intron | 50.0% | |
| TTCAGGTATGTAGGTGCCTC+TGG | - | chr5.4:20307302-20307321 | MS.gene027896:intron | 50.0% | |
| ! | ACATAAATGTGTGGGGGCAC+AGG | + | chr5.4:20305217-20305236 | None:intergenic | 50.0% |
| ! | CATAAATGTGTGGGGGCACA+GGG | + | chr5.4:20305216-20305235 | None:intergenic | 50.0% |
| ! | GATGCAGCAGCATTTTCCAG+AGG | + | chr5.4:20307321-20307340 | None:intergenic | 50.0% |
| ! | GCTGCCATTTCTGCTTTGCA+AGG | - | chr5.4:20306288-20306307 | MS.gene027896:intron | 50.0% |
| ! | TCTAACTTGCGCTGCAGTGA+TGG | - | chr5.4:20308335-20308354 | MS.gene027896:intron | 50.0% |
| !! | GGCTTGGTGGATGCATCATA+AGG | - | chr5.4:20308205-20308224 | MS.gene027896:intron | 50.0% |
| !! | TCTGCCTGCCTTGTTCCTTT+TGG | - | chr5.4:20307957-20307976 | MS.gene027896:intron | 50.0% |
| AAAGGGTGGGGACATAGGGT+TGG | - | chr5.4:20308302-20308321 | MS.gene027896:intron | 55.0% | |
| ACCCAGCAGATTTCCCACCA+GGG | + | chr5.4:20306230-20306249 | None:intergenic | 55.0% | |
| ACCGCCAAAAGGAACAAGGC+AGG | + | chr5.4:20307964-20307983 | None:intergenic | 55.0% | |
| ACGACAGGACGCAAATGCAG+TGG | + | chr5.4:20307656-20307675 | None:intergenic | 55.0% | |
| ACTCTGCGGTGGCATGTAGT+AGG | - | chr5.4:20305776-20305795 | MS.gene027896:intron | 55.0% | |
| ACTGCATTTGCGTCCTGTCG+TGG | - | chr5.4:20307655-20307674 | MS.gene027896:intron | 55.0% | |
| AGACAGGAAACGAGAGTGGC+GGG | + | chr5.4:20304975-20304994 | None:intergenic | 55.0% | |
| CAAATGCAGTGGGTAGACGG+AGG | + | chr5.4:20307645-20307664 | None:intergenic | 55.0% | |
| CGACAGGACGCAAATGCAGT+GGG | + | chr5.4:20307655-20307674 | None:intergenic | 55.0% | |
| CGTCCCAGTAACTCCTGCAA+AGG | + | chr5.4:20309257-20309276 | None:intergenic | 55.0% | |
| GGTGGGAAATCTGCTGGGTA+TGG | - | chr5.4:20306231-20306250 | MS.gene027896:intron | 55.0% | |
| TACCCAGCAGATTTCCCACC+AGG | + | chr5.4:20306231-20306250 | None:intergenic | 55.0% | |
| TTAGGGATATAGGGTGGCCG+CGG | - | chr5.4:20307546-20307565 | MS.gene027896:intron | 55.0% | |
| ! | TAGACGGAGGGTGCAGTTCT+GGG | + | chr5.4:20307632-20307651 | None:intergenic | 55.0% |
| !! | GCCTGCCTTGTTCCTTTTGG+CGG | - | chr5.4:20307960-20307979 | MS.gene027896:intron | 55.0% |
| ACCCCTGGTGGGAAATCTGC+TGG | - | chr5.4:20306225-20306244 | MS.gene027896:intron | 60.0% | |
| AGGGAGTCGTAAGGGTGGCA+TGG | + | chr5.4:20304886-20304905 | None:intergenic | 60.0% | |
| CACCTGGGAGGGAGTCGTAA+GGG | + | chr5.4:20304894-20304913 | None:intergenic | 60.0% | |
| CCCAGCAGATTTCCCACCAG+GGG | + | chr5.4:20306229-20306248 | None:intergenic | 60.0% | |
| CCCCTGGTGGGAAATCTGCT+GGG | - | chr5.4:20306226-20306245 | MS.gene027896:intron | 60.0% | |
| GAGTCGTAAGGGTGGCATGG+TGG | + | chr5.4:20304883-20304902 | None:intergenic | 60.0% | |
| GCTTCCTTAGGAGTGGGAGC+TGG | + | chr5.4:20306093-20306112 | None:intergenic | 60.0% | |
| GGATTCAGGAGAGGAGGCTC+AGG | - | chr5.4:20304531-20304550 | MS.gene027896:CDS | 60.0% | |
| TCACCTGGGAGGGAGTCGTA+AGG | + | chr5.4:20304895-20304914 | None:intergenic | 60.0% | |
| TCCTCCAGCTCCCACTCCTA+AGG | - | chr5.4:20306086-20306105 | MS.gene027896:intron | 60.0% | |
| TCCTTAGGAGTGGGAGCTGG+AGG | + | chr5.4:20306090-20306109 | None:intergenic | 60.0% | |
| TTAGGAGTGGGAGCTGGAGG+AGG | + | chr5.4:20306087-20306106 | None:intergenic | 60.0% | |
| ! | AGACGGAGGGTGCAGTTCTG+GGG | + | chr5.4:20307631-20307650 | None:intergenic | 60.0% |
| ! | GTAGACGGAGGGTGCAGTTC+TGG | + | chr5.4:20307633-20307652 | None:intergenic | 60.0% |
| ACGCAGCACACGCAGAGGAG+AGG | + | chr5.4:20307784-20307803 | None:intergenic | 65.0% | |
| AGGGACAGAGTGGCCACGAC+AGG | + | chr5.4:20307671-20307690 | None:intergenic | 65.0% | |
| CACCCTTACGACTCCCTCCC+AGG | - | chr5.4:20304889-20304908 | MS.gene027896:intron | 65.0% | |
| CTGGGAGGGAGTCGTAAGGG+TGG | + | chr5.4:20304891-20304910 | None:intergenic | 65.0% | |
| GAACCACGCAGCACACGCAG+AGG | + | chr5.4:20307789-20307808 | None:intergenic | 65.0% | |
| TCTCCTCTGCGTGTGCTGCG+TGG | - | chr5.4:20307783-20307802 | MS.gene027896:CDS | 65.0% | |
| GGAGCTGGAGGAGGTGGAGG+AGG | + | chr5.4:20306078-20306097 | None:intergenic | 70.0% | |
| GGAGTGGGAGCTGGAGGAGG+TGG | + | chr5.4:20306084-20306103 | None:intergenic | 70.0% | |
| GTGGGAGCTGGAGGAGGTGG+AGG | + | chr5.4:20306081-20306100 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 20304529 | 20309451 | 20304529 | ID=MS.gene027896 |
| chr5.4 | mRNA | 20304529 | 20309451 | 20304529 | ID=MS.gene027896.t1;Parent=MS.gene027896 |
| chr5.4 | exon | 20309401 | 20309451 | 20309401 | ID=MS.gene027896.t1.exon1;Parent=MS.gene027896.t1 |
| chr5.4 | CDS | 20309401 | 20309451 | 20309401 | ID=cds.MS.gene027896.t1;Parent=MS.gene027896.t1 |
| chr5.4 | exon | 20307666 | 20307956 | 20307666 | ID=MS.gene027896.t1.exon2;Parent=MS.gene027896.t1 |
| chr5.4 | CDS | 20307666 | 20307956 | 20307666 | ID=cds.MS.gene027896.t1;Parent=MS.gene027896.t1 |
| chr5.4 | exon | 20304529 | 20304717 | 20304529 | ID=MS.gene027896.t1.exon3;Parent=MS.gene027896.t1 |
| chr5.4 | CDS | 20304529 | 20304717 | 20304529 | ID=cds.MS.gene027896.t1;Parent=MS.gene027896.t1 |
| Gene Sequence |
| Protein sequence |
