Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027897.t1 | XP_003612875.1 | 87.8 | 279 | 28 | 4 | 1 | 274 | 1 | 278 | 4.40E-120 | 441 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027897.t1 | Q39061 | 32.6 | 184 | 112 | 3 | 97 | 269 | 118 | 300 | 1.2e-22 | 108.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027897.t1 | G7KDR6 | 87.8 | 279 | 28 | 4 | 1 | 274 | 1 | 278 | 3.1e-120 | 441.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene027897 | MS.gene89616 | PPI |
MS.gene027897 | MS.gene76448 | PPI |
MS.gene027897 | MS.gene012058 | PPI |
MS.gene027897 | MS.gene02482 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027897.t1 | MTR_5g030020 | 85.668 | 307 | 38 | 4 | 1 | 302 | 1 | 306 | 2.01e-158 | 445 |
MS.gene027897.t1 | MTR_7g106440 | 35.821 | 201 | 98 | 5 | 82 | 262 | 97 | 286 | 5.50e-34 | 126 |
MS.gene027897.t1 | MTR_1g056520 | 37.000 | 200 | 91 | 6 | 81 | 262 | 99 | 281 | 8.75e-33 | 123 |
MS.gene027897.t1 | MTR_3g099590 | 34.956 | 226 | 130 | 6 | 54 | 274 | 60 | 273 | 1.03e-29 | 114 |
MS.gene027897.t1 | MTR_1g045510 | 35.028 | 177 | 111 | 3 | 92 | 267 | 110 | 283 | 1.02e-26 | 106 |
MS.gene027897.t1 | MTR_3g075500 | 36.111 | 180 | 109 | 4 | 97 | 271 | 111 | 289 | 4.90e-26 | 104 |
MS.gene027897.t1 | MTR_3g075500 | 37.888 | 161 | 94 | 4 | 97 | 252 | 111 | 270 | 1.12e-23 | 97.8 |
MS.gene027897.t1 | MTR_4g104470 | 32.402 | 179 | 114 | 4 | 97 | 271 | 124 | 299 | 9.61e-23 | 95.9 |
MS.gene027897.t1 | MTR_1g064230 | 27.341 | 267 | 149 | 8 | 38 | 270 | 23 | 278 | 1.30e-20 | 89.7 |
MS.gene027897.t1 | MTR_1g061870 | 26.957 | 230 | 144 | 6 | 61 | 270 | 50 | 275 | 2.38e-17 | 82.4 |
MS.gene027897.t1 | MTR_7g102730 | 26.119 | 268 | 167 | 9 | 61 | 303 | 45 | 306 | 3.23e-16 | 79.3 |
MS.gene027897.t1 | MTR_7g102730 | 26.230 | 183 | 122 | 3 | 96 | 267 | 190 | 370 | 3.45e-12 | 67.4 |
MS.gene027897.t1 | MTR_3g027140 | 32.022 | 178 | 111 | 6 | 95 | 264 | 60 | 235 | 5.90e-16 | 75.9 |
MS.gene027897.t1 | MTR_3g065190 | 29.282 | 181 | 113 | 5 | 92 | 267 | 22 | 192 | 1.57e-12 | 67.8 |
MS.gene027897.t1 | MTR_5g070100 | 34.906 | 106 | 66 | 2 | 66 | 168 | 5 | 110 | 2.29e-12 | 67.4 |
MS.gene027897.t1 | MTR_2g097960 | 25.140 | 179 | 123 | 3 | 95 | 267 | 15 | 188 | 4.56e-12 | 66.6 |
MS.gene027897.t1 | MTR_1g019150 | 27.895 | 190 | 119 | 5 | 90 | 267 | 210 | 393 | 7.52e-12 | 66.2 |
MS.gene027897.t1 | MTR_6g040070 | 27.717 | 184 | 119 | 4 | 96 | 267 | 106 | 287 | 1.11e-11 | 65.9 |
MS.gene027897.t1 | MTR_4g131970 | 25.140 | 179 | 123 | 4 | 95 | 267 | 74 | 247 | 1.88e-11 | 64.7 |
MS.gene027897.t1 | MTR_4g085540 | 28.022 | 182 | 112 | 6 | 91 | 263 | 30 | 201 | 1.90e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027897.t1 | AT2G35410 | 50.177 | 283 | 124 | 7 | 1 | 271 | 1 | 278 | 3.41e-78 | 240 |
MS.gene027897.t1 | AT4G09040 | 39.130 | 184 | 109 | 1 | 94 | 274 | 33 | 216 | 3.61e-36 | 130 |
MS.gene027897.t1 | AT4G09040 | 33.984 | 256 | 154 | 4 | 23 | 274 | 32 | 276 | 6.48e-36 | 131 |
MS.gene027897.t1 | AT3G52380 | 32.292 | 192 | 102 | 4 | 97 | 269 | 118 | 300 | 1.49e-28 | 112 |
MS.gene027897.t1 | AT5G50250 | 32.155 | 283 | 145 | 8 | 31 | 269 | 9 | 288 | 5.15e-28 | 110 |
MS.gene027897.t1 | AT4G24770 | 35.429 | 175 | 106 | 4 | 97 | 267 | 152 | 323 | 4.49e-25 | 102 |
MS.gene027897.t1 | AT4G24770 | 35.429 | 175 | 106 | 4 | 97 | 267 | 152 | 323 | 4.49e-25 | 102 |
MS.gene027897.t1 | AT2G37220 | 31.818 | 198 | 101 | 5 | 97 | 267 | 93 | 283 | 1.01e-24 | 101 |
MS.gene027897.t1 | AT1G60000 | 32.402 | 179 | 112 | 4 | 93 | 267 | 83 | 256 | 4.63e-22 | 93.2 |
MS.gene027897.t1 | AT1G01080 | 31.522 | 184 | 110 | 6 | 97 | 267 | 110 | 290 | 4.27e-19 | 85.9 |
MS.gene027897.t1 | AT1G01080 | 31.351 | 185 | 110 | 6 | 97 | 267 | 110 | 291 | 1.20e-18 | 84.7 |
MS.gene027897.t1 | AT1G01080 | 32.927 | 164 | 95 | 5 | 97 | 247 | 110 | 271 | 1.50e-17 | 81.3 |
MS.gene027897.t1 | AT3G52150 | 29.167 | 216 | 135 | 6 | 59 | 264 | 46 | 253 | 6.25e-17 | 79.3 |
MS.gene027897.t1 | AT3G52150 | 29.167 | 216 | 135 | 6 | 59 | 264 | 46 | 253 | 6.25e-17 | 79.3 |
MS.gene027897.t1 | AT4G34110 | 29.648 | 199 | 118 | 6 | 85 | 267 | 204 | 396 | 1.43e-13 | 71.6 |
MS.gene027897.t1 | AT4G34110 | 28.571 | 182 | 119 | 5 | 74 | 254 | 18 | 189 | 8.26e-11 | 63.2 |
MS.gene027897.t1 | AT1G49760 | 29.508 | 183 | 116 | 4 | 96 | 267 | 225 | 405 | 4.31e-13 | 70.1 |
MS.gene027897.t1 | AT1G49760 | 23.077 | 247 | 158 | 8 | 49 | 284 | 100 | 325 | 3.74e-11 | 64.3 |
MS.gene027897.t1 | AT1G49760 | 29.508 | 183 | 116 | 4 | 96 | 267 | 225 | 405 | 4.31e-13 | 70.1 |
MS.gene027897.t1 | AT1G49760 | 23.077 | 247 | 158 | 8 | 49 | 284 | 100 | 325 | 3.74e-11 | 64.3 |
MS.gene027897.t1 | AT1G22760 | 24.658 | 219 | 155 | 5 | 94 | 304 | 135 | 351 | 5.03e-12 | 66.6 |
MS.gene027897.t1 | AT1G22760 | 24.590 | 183 | 125 | 3 | 96 | 267 | 230 | 410 | 9.48e-11 | 62.8 |
MS.gene027897.t1 | AT1G71770 | 27.933 | 179 | 122 | 3 | 96 | 274 | 60 | 231 | 1.38e-11 | 65.5 |
MS.gene027897.t1 | AT1G71770 | 27.933 | 179 | 122 | 3 | 96 | 274 | 60 | 231 | 1.38e-11 | 65.5 |
MS.gene027897.t1 | AT3G16380 | 27.660 | 188 | 128 | 6 | 96 | 282 | 113 | 293 | 8.08e-11 | 63.2 |
MS.gene027897.t1 | AT5G19350 | 24.731 | 186 | 127 | 4 | 88 | 267 | 18 | 196 | 8.62e-11 | 62.8 |
MS.gene027897.t1 | AT5G19350 | 24.731 | 186 | 127 | 4 | 88 | 267 | 18 | 196 | 8.93e-11 | 62.8 |
Find 69 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTCTTCACTTCCAGCTTC+TGG | 0.261287 | 5.4:+20262856 | None:intergenic |
ATTAGGATTTATAACTCTTC+TGG | 0.265120 | 5.4:+20262808 | None:intergenic |
AGTTGAAGCATGGAGTTTAA+TGG | 0.267862 | 5.4:+20272410 | None:intergenic |
GTGGATATTGTGAGAGAAAA+TGG | 0.287566 | 5.4:+20272365 | None:intergenic |
GTGGGAGCTGGAGGAGGTGG+AGG | 0.313320 | 5.4:+20265800 | None:intergenic |
TAAAGCGTAGCAGAGTGTTT+TGG | 0.351271 | 5.4:+20272311 | None:intergenic |
GGAGTGGGAGCTGGAGGAGG+TGG | 0.381685 | 5.4:+20265797 | None:intergenic |
TCTTTCTAAGCCGGATATCT+TGG | 0.394171 | 5.4:-20272187 | MS.gene027897:CDS |
AAATATCAGGCCGGATAGTA+AGG | 0.395140 | 5.4:-20265853 | MS.gene027897:CDS |
CTTCCCTTGCAAAGCAGAAA+TGG | 0.396033 | 5.4:+20265595 | None:intergenic |
ATCCCTTTGCAGGAGTTACT+TGG | 0.398199 | 5.4:-20262964 | MS.gene027897:intron |
TAGATTGTAAGGAGCAAAGA+TGG | 0.419837 | 5.4:-20271590 | MS.gene027897:CDS |
AAGACAACCCTGGCTGAAAC+TGG | 0.421042 | 5.4:+20265689 | None:intergenic |
AGCAAAGATGGGAAGGGAAA+AGG | 0.428652 | 5.4:-20271578 | MS.gene027897:CDS |
ACCCCTGGTGGGAAATCAGC+TGG | 0.442323 | 5.4:-20265662 | MS.gene027897:CDS |
AGGGTTGTCTTTCAAACCCC+TGG | 0.459212 | 5.4:-20265677 | MS.gene027897:CDS |
GCCTTGGTCTCTTTCTAAGC+CGG | 0.461671 | 5.4:-20272196 | MS.gene027897:CDS |
TGGATTTGTTTCTTATCATA+CGG | 0.462438 | 5.4:-20265636 | MS.gene027897:CDS |
GTATTATGTAGTAGATTGTA+AGG | 0.466243 | 5.4:-20271601 | MS.gene027897:intron |
GGATTCAGCAGAGGAGGCTC+AGG | 0.470225 | 5.4:-20271537 | MS.gene027897:CDS |
TCAAAACACCAGTTTCAGCC+AGG | 0.476508 | 5.4:-20265697 | MS.gene027897:CDS |
GATGCATAGATTACATCCTT+AGG | 0.480150 | 5.4:+20265776 | None:intergenic |
GGTGGGAAATCAGCTGGGTA+TGG | 0.481776 | 5.4:-20265656 | MS.gene027897:CDS |
GCATGGAGTTTAATGGAATC+TGG | 0.482931 | 5.4:+20272417 | None:intergenic |
TGTATGGTTCAGGAAATATC+AGG | 0.485654 | 5.4:-20265866 | MS.gene027897:intron |
TCGTTGTCTTTAACTTGCCT+TGG | 0.492155 | 5.4:-20272212 | MS.gene027897:CDS |
AAGAAGAAAAGTGAAGTTTG+TGG | 0.493594 | 5.4:+20272346 | None:intergenic |
TTAGGAGTGGGAGCTGGAGG+AGG | 0.494581 | 5.4:+20265794 | None:intergenic |
TAGATCTTGCTTTCCACGCA+AGG | 0.504732 | 5.4:+20265750 | None:intergenic |
TACCCAGCTGATTTCCCACC+AGG | 0.504914 | 5.4:+20265659 | None:intergenic |
CAAACTCTACCCTTACTATC+CGG | 0.508382 | 5.4:+20265843 | None:intergenic |
GCGAAGAGATCCAAGATATC+CGG | 0.512337 | 5.4:+20272177 | None:intergenic |
TTGATGTGTGAATACAGTTA+TGG | 0.514213 | 5.4:+20272482 | None:intergenic |
TCCTCCAGCTCCCACTCCTA+AGG | 0.518165 | 5.4:-20265792 | MS.gene027897:CDS |
TGTAAGGAGCAAAGATGGGA+AGG | 0.525578 | 5.4:-20271585 | MS.gene027897:CDS |
AGATTGTAAGGAGCAAAGAT+GGG | 0.526264 | 5.4:-20271589 | MS.gene027897:CDS |
AAGGGATTGAAGTTGAAGCA+TGG | 0.531889 | 5.4:+20272400 | None:intergenic |
GTAAGGGTAGAGTTTGCAAA+GGG | 0.535644 | 5.4:-20265836 | MS.gene027897:CDS |
GACGACGCGCAACCAGAAGC+TGG | 0.536977 | 5.4:-20262868 | MS.gene027897:CDS |
CTGCCATTTCTGCTTTGCAA+GGG | 0.550388 | 5.4:-20265598 | MS.gene027897:CDS |
GTTGATTCTAACGTTGCCAT+TGG | 0.551004 | 5.4:+20272504 | None:intergenic |
AGTAAGGGTAGAGTTTGCAA+AGG | 0.552899 | 5.4:-20265837 | MS.gene027897:CDS |
CATTTCTGCTTTGCAAGGGA+AGG | 0.553509 | 5.4:-20265594 | MS.gene027897:intron |
TCCTTAGGAGTGGGAGCTGG+AGG | 0.554954 | 5.4:+20265791 | None:intergenic |
GCTGCCATTTCTGCTTTGCA+AGG | 0.563024 | 5.4:-20265599 | MS.gene027897:CDS |
ACATCCTTAGGAGTGGGAGC+TGG | 0.566195 | 5.4:+20265788 | None:intergenic |
TCTTGCTTTCCACGCAAGGT+TGG | 0.567345 | 5.4:+20265754 | None:intergenic |
TACTATGGATTCAGCAGAGG+AGG | 0.568849 | 5.4:-20271543 | MS.gene027897:CDS |
CCCAGCTGATTTCCCACCAG+GGG | 0.579892 | 5.4:+20265661 | None:intergenic |
TGTTTCTTATCATACGGAGG+AGG | 0.584671 | 5.4:-20265630 | MS.gene027897:CDS |
TGTTACTATGGATTCAGCAG+AGG | 0.585837 | 5.4:-20271546 | MS.gene027897:CDS |
TCTATGCATCCAACCTTGCG+TGG | 0.590146 | 5.4:-20265763 | MS.gene027897:CDS |
CCCCTGGTGGGAAATCAGCT+GGG | 0.591597 | 5.4:-20265661 | MS.gene027897:CDS |
GTTGTCTTTCAAACCCCTGG+TGG | 0.593929 | 5.4:-20265674 | MS.gene027897:CDS |
CAAAACACCAGTTTCAGCCA+GGG | 0.593941 | 5.4:-20265696 | MS.gene027897:CDS |
TAGATTACATCCTTAGGAGT+GGG | 0.602005 | 5.4:+20265782 | None:intergenic |
AGCAGCAACAACAACTGAAG+AGG | 0.616178 | 5.4:-20272274 | MS.gene027897:CDS |
AGCAACAACAACTGAAGAGG+TGG | 0.617385 | 5.4:-20272271 | MS.gene027897:CDS |
TTGTCTTTCAAACCCCTGGT+GGG | 0.617575 | 5.4:-20265673 | MS.gene027897:CDS |
GTAAGGAGCAAAGATGGGAA+GGG | 0.619986 | 5.4:-20271584 | MS.gene027897:CDS |
AATATCAGGCCGGATAGTAA+GGG | 0.636833 | 5.4:-20265852 | MS.gene027897:CDS |
TTGGATCTCTTCGCTCAATG+TGG | 0.644692 | 5.4:-20272168 | MS.gene027897:CDS |
ATTTGTTTCTTATCATACGG+AGG | 0.652812 | 5.4:-20265633 | MS.gene027897:CDS |
ATAGATTACATCCTTAGGAG+TGG | 0.660270 | 5.4:+20265781 | None:intergenic |
TGGTTCAGGAAATATCAGGC+CGG | 0.661234 | 5.4:-20265862 | MS.gene027897:intron |
ACCCAGCTGATTTCCCACCA+GGG | 0.668477 | 5.4:+20265660 | None:intergenic |
TGGAACTGTAATTGACGTTG+AGG | 0.676463 | 5.4:-20272148 | MS.gene027897:intron |
TCCGGCTTAGAAAGAGACCA+AGG | 0.685478 | 5.4:+20272195 | None:intergenic |
AGGGGTTTGAAAGACAACCC+TGG | 0.712579 | 5.4:+20265679 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 20262816 | 20272523 | 20262816 | ID=MS.gene027897 |
chr5.4 | mRNA | 20262816 | 20272523 | 20262816 | ID=MS.gene027897.t1;Parent=MS.gene027897 |
chr5.4 | exon | 20272149 | 20272523 | 20272149 | ID=MS.gene027897.t1.exon1;Parent=MS.gene027897.t1 |
chr5.4 | CDS | 20272149 | 20272523 | 20272149 | ID=cds.MS.gene027897.t1;Parent=MS.gene027897.t1 |
chr5.4 | exon | 20271511 | 20271609 | 20271511 | ID=MS.gene027897.t1.exon2;Parent=MS.gene027897.t1 |
chr5.4 | CDS | 20271511 | 20271609 | 20271511 | ID=cds.MS.gene027897.t1;Parent=MS.gene027897.t1 |
chr5.4 | exon | 20265595 | 20265876 | 20265595 | ID=MS.gene027897.t1.exon3;Parent=MS.gene027897.t1 |
chr5.4 | CDS | 20265595 | 20265876 | 20265595 | ID=cds.MS.gene027897.t1;Parent=MS.gene027897.t1 |
chr5.4 | exon | 20262816 | 20262974 | 20262816 | ID=MS.gene027897.t1.exon4;Parent=MS.gene027897.t1 |
chr5.4 | CDS | 20262816 | 20262974 | 20262816 | ID=cds.MS.gene027897.t1;Parent=MS.gene027897.t1 |
Gene Sequence |
Protein sequence |