Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029127.t1 | XP_013470448.1 | 81.2 | 442 | 37 | 2 | 1 | 396 | 60 | 501 | 2.10E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029127.t1 | Q9ZT96 | 51.9 | 393 | 143 | 1 | 13 | 359 | 112 | 504 | 3.6e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029127.t1 | A0A072VS35 | 81.2 | 442 | 37 | 2 | 1 | 396 | 60 | 501 | 1.5e-122 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029127.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029127 | MS.gene013885 | PPI |
| MS.gene41848 | MS.gene029127 | PPI |
| MS.gene029127 | MS.gene042550 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029127.t1 | MTR_1g115415 | 88.009 | 442 | 7 | 1 | 1 | 396 | 60 | 501 | 0.0 | 740 |
| MS.gene029127.t1 | MTR_8g105560 | 85.086 | 409 | 24 | 2 | 1 | 394 | 38 | 424 | 0.0 | 683 |
| MS.gene029127.t1 | MTR_5g068860 | 46.250 | 400 | 167 | 2 | 12 | 363 | 103 | 502 | 8.18e-125 | 371 |
| MS.gene029127.t1 | MTR_4g070060 | 26.812 | 276 | 195 | 3 | 79 | 351 | 320 | 591 | 5.68e-30 | 122 |
| MS.gene029127.t1 | MTR_2g034600 | 28.929 | 280 | 187 | 6 | 75 | 350 | 216 | 487 | 1.94e-27 | 114 |
| MS.gene029127.t1 | MTR_2g034600 | 25.789 | 190 | 137 | 4 | 142 | 329 | 211 | 398 | 8.70e-14 | 73.2 |
| MS.gene029127.t1 | MTR_2g034600 | 28.929 | 280 | 187 | 6 | 75 | 350 | 277 | 548 | 3.49e-27 | 113 |
| MS.gene029127.t1 | MTR_2g034600 | 25.789 | 190 | 137 | 4 | 142 | 329 | 272 | 459 | 9.32e-14 | 73.2 |
| MS.gene029127.t1 | MTR_2g034600 | 28.929 | 280 | 187 | 6 | 75 | 350 | 281 | 552 | 3.53e-27 | 113 |
| MS.gene029127.t1 | MTR_2g034600 | 25.789 | 190 | 137 | 4 | 142 | 329 | 276 | 463 | 9.46e-14 | 73.2 |
| MS.gene029127.t1 | MTR_6g003960 | 25.982 | 331 | 224 | 8 | 23 | 351 | 282 | 593 | 5.17e-22 | 98.6 |
| MS.gene029127.t1 | MTR_4g084630 | 22.022 | 277 | 206 | 5 | 76 | 346 | 47 | 319 | 6.74e-21 | 93.2 |
| MS.gene029127.t1 | MTR_4g084630 | 26.066 | 211 | 124 | 5 | 23 | 206 | 45 | 250 | 1.59e-11 | 65.5 |
| MS.gene029127.t1 | MTR_5g094610 | 26.906 | 223 | 156 | 4 | 110 | 327 | 230 | 450 | 5.24e-19 | 89.0 |
| MS.gene029127.t1 | MTR_5g094610 | 24.651 | 215 | 140 | 6 | 22 | 214 | 194 | 408 | 1.95e-12 | 68.9 |
| MS.gene029127.t1 | MTR_2g049780 | 26.923 | 208 | 116 | 3 | 176 | 347 | 99 | 306 | 1.81e-15 | 77.0 |
| MS.gene029127.t1 | MTR_5g041630 | 26.667 | 255 | 139 | 6 | 105 | 351 | 88 | 302 | 2.03e-14 | 73.9 |
| MS.gene029127.t1 | MTR_2g067230 | 27.746 | 173 | 117 | 3 | 198 | 368 | 157 | 323 | 1.50e-13 | 71.6 |
| MS.gene029127.t1 | MTR_3g092710 | 21.767 | 317 | 191 | 9 | 44 | 345 | 217 | 491 | 1.15e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029127.t1 | AT2G44020 | 71.332 | 443 | 80 | 2 | 1 | 396 | 65 | 507 | 0.0 | 626 |
| MS.gene029127.t1 | AT4G02990 | 46.565 | 393 | 164 | 1 | 13 | 359 | 112 | 504 | 9.37e-121 | 361 |
| MS.gene029127.t1 | AT4G02990 | 46.565 | 393 | 164 | 1 | 13 | 359 | 112 | 504 | 9.37e-121 | 361 |
| MS.gene029127.t1 | AT2G21710 | 24.346 | 382 | 255 | 6 | 7 | 381 | 272 | 626 | 2.19e-34 | 135 |
| MS.gene029127.t1 | AT4G38160 | 25.547 | 274 | 195 | 4 | 82 | 349 | 54 | 324 | 3.54e-29 | 116 |
| MS.gene029127.t1 | AT4G38160 | 25.547 | 274 | 195 | 4 | 82 | 349 | 54 | 324 | 3.54e-29 | 116 |
| MS.gene029127.t1 | AT4G38160 | 25.547 | 274 | 195 | 4 | 82 | 349 | 54 | 324 | 6.51e-29 | 116 |
| MS.gene029127.t1 | AT4G38160 | 25.547 | 274 | 195 | 4 | 82 | 349 | 54 | 324 | 8.62e-29 | 116 |
| MS.gene029127.t1 | AT1G78930 | 25.545 | 321 | 218 | 8 | 48 | 351 | 264 | 580 | 3.47e-26 | 110 |
| MS.gene029127.t1 | AT4G14605 | 27.444 | 266 | 181 | 6 | 85 | 346 | 211 | 468 | 2.96e-23 | 101 |
| MS.gene029127.t1 | AT4G14605 | 27.444 | 266 | 181 | 6 | 85 | 346 | 211 | 468 | 2.96e-23 | 101 |
| MS.gene029127.t1 | AT2G21710 | 23.226 | 310 | 206 | 5 | 7 | 309 | 272 | 556 | 2.21e-22 | 99.4 |
| MS.gene029127.t1 | AT2G21710 | 23.052 | 308 | 205 | 5 | 7 | 307 | 272 | 554 | 2.14e-21 | 96.7 |
| MS.gene029127.t1 | AT5G55580 | 26.027 | 219 | 155 | 4 | 112 | 325 | 119 | 335 | 7.46e-19 | 87.8 |
| MS.gene029127.t1 | AT5G55580 | 23.047 | 256 | 171 | 7 | 20 | 253 | 79 | 330 | 1.68e-11 | 65.9 |
| MS.gene029127.t1 | AT5G55580 | 26.027 | 219 | 155 | 4 | 112 | 325 | 225 | 441 | 5.27e-18 | 86.3 |
| MS.gene029127.t1 | AT5G55580 | 22.989 | 261 | 175 | 7 | 20 | 258 | 185 | 441 | 2.11e-11 | 65.9 |
| MS.gene029127.t1 | AT2G34620 | 27.138 | 269 | 153 | 8 | 86 | 351 | 68 | 296 | 1.55e-15 | 77.0 |
| MS.gene029127.t1 | AT5G54180 | 25.097 | 259 | 155 | 6 | 126 | 347 | 234 | 490 | 4.12e-14 | 74.3 |
| MS.gene029127.t1 | AT2G03050 | 27.049 | 244 | 163 | 6 | 112 | 349 | 39 | 273 | 3.41e-13 | 70.1 |
| MS.gene029127.t1 | AT2G03050 | 27.049 | 244 | 163 | 6 | 112 | 349 | 38 | 272 | 3.47e-13 | 70.1 |
| MS.gene029127.t1 | AT2G36000 | 23.810 | 252 | 167 | 8 | 112 | 353 | 79 | 315 | 4.01e-12 | 67.0 |
| MS.gene029127.t1 | AT2G36000 | 24.096 | 249 | 164 | 8 | 112 | 350 | 79 | 312 | 9.43e-12 | 66.2 |
| MS.gene029127.t1 | AT1G79220 | 21.053 | 285 | 204 | 7 | 43 | 321 | 55 | 324 | 7.13e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | 1.3:+78619768 | MS.gene029127:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.154219 | 1.3:+78619727 | MS.gene029127:CDS |
| GTTGATTACTTGGTTAATTT+AGG | 0.162887 | 1.3:+78620147 | MS.gene029127:CDS |
| GCTCAGTATCCGCAGATTAT+TGG | 0.210052 | 1.3:+78620309 | MS.gene029127:CDS |
| TCCTGATGAATTGCAGGATT+TGG | 0.241747 | 1.3:+78619669 | MS.gene029127:CDS |
| AAAGTATAGGTCCTTCATTC+TGG | 0.247502 | 1.3:+78620781 | MS.gene029127:CDS |
| TTGATTACTTGGTTAATTTA+GGG | 0.247846 | 1.3:+78620148 | MS.gene029127:CDS |
| TCACTTATAGTTTGGAATCT+AGG | 0.287748 | 1.3:+78620640 | MS.gene029127:CDS |
| AGAATACTTCACTTATAGTT+TGG | 0.295127 | 1.3:+78620632 | MS.gene029127:CDS |
| CTTCGATTATCTCAAGGGTT+TGG | 0.298946 | 1.3:+78619639 | MS.gene029127:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | 1.3:+78620255 | MS.gene029127:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | 1.3:-78620669 | None:intergenic |
| TTCGATTATCTCAAGGGTTT+GGG | 0.314201 | 1.3:+78619640 | MS.gene029127:CDS |
| CCTGTTATTTAGTTTCTTAG+AGG | 0.314908 | 1.3:+78619925 | MS.gene029127:intron |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | 1.3:+78620697 | MS.gene029127:CDS |
| TTGAGTTTATTCAGAAATTA+GGG | 0.329984 | 1.3:+78619728 | MS.gene029127:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | 1.3:-78619994 | None:intergenic |
| GCCACCCTCGCAAACCCTTC+CGG | 0.353393 | 1.3:-78620396 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | 1.3:+78619953 | MS.gene029127:CDS |
| AATTATTCCTGATGAATTGC+AGG | 0.358521 | 1.3:+78619663 | MS.gene029127:CDS |
| AAACTATAAGTGAAGTATTC+TGG | 0.362016 | 1.3:-78620630 | None:intergenic |
| AAAGCCTCTTGTTGATTACT+TGG | 0.364443 | 1.3:+78620137 | MS.gene029127:CDS |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | 1.3:+78620449 | MS.gene029127:CDS |
| CTAATCAAACAATCAACATT+AGG | 0.365413 | 1.3:-78620249 | None:intergenic |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | 1.3:-78620826 | None:intergenic |
| GTTGCTTATCTTGTTAGTAT+TGG | 0.373295 | 1.3:+78620039 | MS.gene029127:CDS |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | 1.3:+78620052 | MS.gene029127:CDS |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | 1.3:+78619952 | MS.gene029127:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | 1.3:-78620677 | None:intergenic |
| GAAGACAATTTCGCCTTAAG+AGG | 0.388607 | 1.3:-78620336 | None:intergenic |
| GATTATTGGATTGCCTCTTA+AGG | 0.391397 | 1.3:+78620323 | MS.gene029127:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | 1.3:+78620740 | MS.gene029127:CDS |
| GTCGCAGGATGTGGCTAGTA+TGG | 0.403205 | 1.3:+78620500 | MS.gene029127:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | 1.3:+78620068 | MS.gene029127:CDS |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | 1.3:-78619697 | None:intergenic |
| GAGAAAAGAGCTTATTTACT+TGG | 0.425844 | 1.3:+78620201 | MS.gene029127:CDS |
| GAATGAAGGACCTATACTTT+CGG | 0.432637 | 1.3:-78620778 | None:intergenic |
| TATTCAGAAATTAGGGTTAA+CGG | 0.433903 | 1.3:+78619735 | MS.gene029127:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | 1.3:-78620737 | None:intergenic |
| TCCGGAAGGGTTTGCGAGGG+TGG | 0.449648 | 1.3:+78620395 | MS.gene029127:CDS |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | 1.3:+78620060 | MS.gene029127:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | 1.3:+78620836 | MS.gene029127:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | 1.3:+78620579 | MS.gene029127:CDS |
| CGAGATGCCTACTGTTACAT+GGG | 0.462699 | 1.3:+78619570 | None:intergenic |
| TCCAAATCCTGCAATTCATC+AGG | 0.465291 | 1.3:-78619670 | None:intergenic |
| GCGAAACGAGTTTCTCTTTG+CGG | 0.473966 | 1.3:-78619606 | None:intergenic |
| ATCCTAGCTAGAATCTTCTT+AGG | 0.491214 | 1.3:-78620174 | None:intergenic |
| GGAAGGGTTTGCGAGGGTGG+CGG | 0.491647 | 1.3:+78620398 | MS.gene029127:CDS |
| GTTACATGGGGTGTCATTCA+AGG | 0.496359 | 1.3:+78619583 | MS.gene029127:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | 1.3:+78620675 | MS.gene029127:CDS |
| CATCATCTTCGATTATCTCA+AGG | 0.503798 | 1.3:+78619633 | MS.gene029127:CDS |
| GGCAATACCGTCGCAGGATG+TGG | 0.504137 | 1.3:+78620491 | MS.gene029127:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | 1.3:+78620377 | MS.gene029127:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | 1.3:+78620578 | MS.gene029127:CDS |
| GGTCCTTCATTCTGGATTGG+TGG | 0.510705 | 1.3:+78620789 | MS.gene029127:CDS |
| GTCCTTCATTCTGGATTGGT+GGG | 0.516545 | 1.3:+78620790 | MS.gene029127:CDS |
| ATAGGTCCTTCATTCTGGAT+TGG | 0.517859 | 1.3:+78620786 | MS.gene029127:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | 1.3:+78620053 | MS.gene029127:CDS |
| ACGAGATGCCTACTGTTACA+TGG | 0.523419 | 1.3:+78619569 | None:intergenic |
| ATCATCTTCGATTATCTCAA+GGG | 0.534022 | 1.3:+78619634 | MS.gene029127:CDS |
| ATTGTTCTGCTAAAGAGAAA+CGG | 0.538058 | 1.3:-78620889 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | 1.3:+78620768 | MS.gene029127:CDS |
| GAGGAAGGAATGTTTGCCCT+CGG | 0.544202 | 1.3:+78620281 | MS.gene029127:CDS |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | 1.3:+78620382 | MS.gene029127:CDS |
| TTCCCACCAATCCAGAATGA+AGG | 0.560953 | 1.3:-78620792 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | 1.3:+78620741 | MS.gene029127:CDS |
| GCAAAGAGAAACTCGTTTCG+CGG | 0.565498 | 1.3:+78619608 | MS.gene029127:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | 1.3:+78620674 | MS.gene029127:CDS |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | 1.3:+78619698 | MS.gene029127:CDS |
| CAAAGAGAAACTCGTTTCGC+GGG | 0.570276 | 1.3:+78619609 | MS.gene029127:CDS |
| GAAGATTCTAGCTAGGATGT+TGG | 0.572863 | 1.3:+78620179 | MS.gene029127:CDS |
| TGGTAGGGCAATACCGTCGC+AGG | 0.580954 | 1.3:+78620485 | MS.gene029127:CDS |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | 1.3:+78620602 | MS.gene029127:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | 1.3:-78619704 | None:intergenic |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | 1.3:-78620084 | None:intergenic |
| GGTGATCAAGTGTCCTCAGT+TGG | 0.594291 | 1.3:+78620521 | MS.gene029127:CDS |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | 1.3:-78619778 | None:intergenic |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | 1.3:+78620676 | MS.gene029127:CDS |
| TTAACCAAGTAATCAACAAG+AGG | 0.605793 | 1.3:-78620141 | None:intergenic |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | 1.3:-78620825 | None:intergenic |
| TTGATCCGGAAGGGTTTGCG+AGG | 0.614047 | 1.3:+78620391 | MS.gene029127:CDS |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | 1.3:+78620808 | MS.gene029127:CDS |
| ACTCGCAGCGCAACCAACTG+AGG | 0.617167 | 1.3:-78620534 | None:intergenic |
| GGTGGGAAATTAGAGCTACC+CGG | 0.618425 | 1.3:+78620807 | MS.gene029127:CDS |
| GGTGGCGGAGAAGATGCCAC+AGG | 0.620206 | 1.3:+78620413 | MS.gene029127:CDS |
| TGCCTAAGAAGATTCTAGCT+AGG | 0.620780 | 1.3:+78620172 | MS.gene029127:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | 1.3:+78620381 | MS.gene029127:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | 1.3:+78619699 | MS.gene029127:CDS |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | 1.3:-78620069 | None:intergenic |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | 1.3:+78620580 | MS.gene029127:CDS |
| ATGACACCCCATGTAACAGT+AGG | 0.649004 | 1.3:-78619577 | None:intergenic |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | 1.3:-78620429 | None:intergenic |
| TGATCCGGAAGGGTTTGCGA+GGG | 0.652425 | 1.3:+78620392 | MS.gene029127:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | 1.3:+78620830 | MS.gene029127:CDS |
| GGCGGAGAAGATGCCACAGG+TGG | 0.656425 | 1.3:+78620416 | MS.gene029127:CDS |
| ATACTAGCCACATCCTGCGA+CGG | 0.678965 | 1.3:-78620498 | None:intergenic |
| AGAGGCAATCCAATAATCTG+CGG | 0.679844 | 1.3:-78620318 | None:intergenic |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | 1.3:+78620661 | MS.gene029127:CDS |
| GGATACTGAGCAATAACCGA+GGG | 0.697015 | 1.3:-78620297 | None:intergenic |
| CGGATACTGAGCAATAACCG+AGG | 0.701830 | 1.3:-78620298 | None:intergenic |
| GAGATGCCTACTGTTACATG+GGG | 0.725465 | 1.3:+78619571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTTTATTCAGAAATTA+GGG | + | chr1.3:78619728-78619747 | MS.gene029127:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | + | chr1.3:78620148-78620167 | MS.gene029127:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr1.3:78619986-78620005 | MS.gene029127:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | + | chr1.3:78619824-78619843 | MS.gene029127:intron | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | + | chr1.3:78619823-78619842 | MS.gene029127:intron | 20.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | + | chr1.3:78620632-78620651 | MS.gene029127:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr1.3:78619953-78619972 | MS.gene029127:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | chr1.3:78620252-78620271 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | chr1.3:78619727-78619746 | MS.gene029127:CDS | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | + | chr1.3:78620147-78620166 | MS.gene029127:CDS | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | chr1.3:78619833-78619852 | MS.gene029127:intron | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | + | chr1.3:78619735-78619754 | MS.gene029127:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr1.3:78620449-78620468 | MS.gene029127:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr1.3:78619805-78619824 | MS.gene029127:intron | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | + | chr1.3:78619806-78619825 | MS.gene029127:intron | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | - | chr1.3:78620633-78620652 | None:intergenic | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr1.3:78619985-78620004 | MS.gene029127:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | - | chr1.3:78619820-78619839 | None:intergenic | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr1.3:78619768-78619787 | MS.gene029127:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr1.3:78619769-78619788 | MS.gene029127:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr1.3:78620093-78620112 | MS.gene029127:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr1.3:78620094-78620113 | MS.gene029127:CDS | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr1.3:78620255-78620274 | MS.gene029127:CDS | 25.0% |
| AATTATTCCTGATGAATTGC+AGG | + | chr1.3:78619663-78619682 | MS.gene029127:CDS | 30.0% | |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr1.3:78620105-78620124 | None:intergenic | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr1.3:78619634-78619653 | MS.gene029127:CDS | 30.0% | |
| GAATGATATAGTTTCAGATG+AGG | + | chr1.3:78620830-78620849 | MS.gene029127:CDS | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | + | chr1.3:78620201-78620220 | MS.gene029127:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr1.3:78619952-78619971 | MS.gene029127:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | + | chr1.3:78620039-78620058 | MS.gene029127:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | chr1.3:78620579-78620598 | MS.gene029127:CDS | 30.0% | |
| TTAACCAAGTAATCAACAAG+AGG | - | chr1.3:78620144-78620163 | None:intergenic | 30.0% | |
| TTACTTCTTCAAAAGTGAGA+TGG | + | chr1.3:78620578-78620597 | MS.gene029127:CDS | 30.0% | |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr1.3:78620829-78620848 | None:intergenic | 30.0% |
| ! | CCTCTAAGAAACTAAATAAC+AGG | - | chr1.3:78619928-78619947 | None:intergenic | 30.0% |
| ! | CCTGTTATTTAGTTTCTTAG+AGG | + | chr1.3:78619925-78619944 | MS.gene029127:intron | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr1.3:78620697-78620716 | MS.gene029127:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | chr1.3:78620768-78620787 | MS.gene029127:CDS | 30.0% |
| ! | TCACTTATAGTTTGGAATCT+AGG | + | chr1.3:78620640-78620659 | MS.gene029127:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | chr1.3:78620377-78620396 | MS.gene029127:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | chr1.3:78620053-78620072 | MS.gene029127:CDS | 30.0% |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | chr1.3:78620052-78620071 | MS.gene029127:CDS | 30.0% |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr1.3:78620262-78620281 | MS.gene029127:CDS | 30.0% |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr1.3:78620105-78620124 | MS.gene029127:CDS | 30.0% |
| AAAGTATAGGTCCTTCATTC+TGG | + | chr1.3:78620781-78620800 | MS.gene029127:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr1.3:78619781-78619800 | None:intergenic | 35.0% | |
| ACTTCTTCAAAAGTGAGATG+GGG | + | chr1.3:78620580-78620599 | MS.gene029127:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr1.3:78620741-78620760 | MS.gene029127:CDS | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr1.3:78619997-78620016 | None:intergenic | 35.0% | |
| ATCCTAGCTAGAATCTTCTT+AGG | - | chr1.3:78620177-78620196 | None:intergenic | 35.0% | |
| CATCATCTTCGATTATCTCA+AGG | + | chr1.3:78619633-78619652 | MS.gene029127:CDS | 35.0% | |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr1.3:78620471-78620490 | None:intergenic | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | chr1.3:78620781-78620800 | None:intergenic | 35.0% | |
| GATTATTGGATTGCCTCTTA+AGG | + | chr1.3:78620323-78620342 | MS.gene029127:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr1.3:78620087-78620106 | None:intergenic | 35.0% | |
| TATAGTTTCAGATGAGGAAG+AGG | + | chr1.3:78620836-78620855 | MS.gene029127:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr1.3:78619640-78619659 | MS.gene029127:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr1.3:78620465-78620484 | MS.gene029127:CDS | 35.0% |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr1.3:78620137-78620156 | MS.gene029127:CDS | 35.0% |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr1.3:78620470-78620489 | MS.gene029127:CDS | 35.0% |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr1.3:78620828-78620847 | None:intergenic | 35.0% |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr1.3:78620000-78620019 | MS.gene029127:CDS | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr1.3:78620266-78620285 | MS.gene029127:CDS | 35.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | chr1.3:78620381-78620400 | MS.gene029127:CDS | 40.0% | |
| ACACTAGCATGCAAAACTTG+TGG | - | chr1.3:78619889-78619908 | None:intergenic | 40.0% | |
| AGAGGCAATCCAATAATCTG+CGG | - | chr1.3:78620321-78620340 | None:intergenic | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | chr1.3:78620382-78620401 | MS.gene029127:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | + | chr1.3:78620786-78620805 | MS.gene029127:CDS | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr1.3:78619639-78619658 | MS.gene029127:CDS | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | - | chr1.3:78620339-78620358 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr1.3:78620740-78620759 | MS.gene029127:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr1.3:78620740-78620759 | None:intergenic | 40.0% | |
| GGATTAAACCTAGATACCAG+AGG | + | chr1.3:78620661-78620680 | MS.gene029127:CDS | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | chr1.3:78620060-78620079 | MS.gene029127:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr1.3:78619673-78619692 | None:intergenic | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | + | chr1.3:78619669-78619688 | MS.gene029127:CDS | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | + | chr1.3:78619699-78619718 | MS.gene029127:CDS | 40.0% | |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr1.3:78620609-78620628 | None:intergenic | 40.0% |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr1.3:78620469-78620488 | MS.gene029127:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | + | chr1.3:78620179-78620198 | MS.gene029127:CDS | 40.0% |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | chr1.3:78619844-78619863 | MS.gene029127:intron | 40.0% |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | + | chr1.3:78620172-78620191 | MS.gene029127:CDS | 40.0% |
| ACCATAGGACCAATATCCCT+AGG | - | chr1.3:78620072-78620091 | None:intergenic | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | chr1.3:78619707-78619726 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr1.3:78620674-78620693 | MS.gene029127:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | - | chr1.3:78619580-78619599 | None:intergenic | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | + | chr1.3:78619609-78619628 | MS.gene029127:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | - | chr1.3:78619700-78619719 | None:intergenic | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | chr1.3:78620672-78620691 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | + | chr1.3:78619698-78619717 | MS.gene029127:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr1.3:78620602-78620621 | MS.gene029127:CDS | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | + | chr1.3:78619608-78619627 | MS.gene029127:CDS | 45.0% | |
| GCGAAACGAGTTTCTCTTTG+CGG | - | chr1.3:78619609-78619628 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | + | chr1.3:78620309-78620328 | MS.gene029127:CDS | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | - | chr1.3:78620300-78620319 | None:intergenic | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr1.3:78620675-78620694 | MS.gene029127:CDS | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | chr1.3:78620068-78620087 | MS.gene029127:CDS | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | - | chr1.3:78620432-78620451 | None:intergenic | 45.0% | |
| TTCCCACCAATCCAGAATGA+AGG | - | chr1.3:78620795-78620814 | None:intergenic | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | + | chr1.3:78620790-78620809 | MS.gene029127:CDS | 45.0% |
| !! | GTTACATGGGGTGTCATTCA+AGG | + | chr1.3:78619583-78619602 | MS.gene029127:CDS | 45.0% |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr1.3:78620676-78620695 | MS.gene029127:CDS | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | - | chr1.3:78620501-78620520 | None:intergenic | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | - | chr1.3:78620301-78620320 | None:intergenic | 50.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | + | chr1.3:78620281-78620300 | MS.gene029127:CDS | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | + | chr1.3:78620521-78620540 | MS.gene029127:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr1.3:78620807-78620826 | MS.gene029127:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr1.3:78620808-78620827 | MS.gene029127:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | + | chr1.3:78620789-78620808 | MS.gene029127:CDS | 50.0% |
| GTCGCAGGATGTGGCTAGTA+TGG | + | chr1.3:78620500-78620519 | MS.gene029127:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr1.3:78620680-78620699 | None:intergenic | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | + | chr1.3:78620392-78620411 | MS.gene029127:CDS | 55.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | + | chr1.3:78620391-78620410 | MS.gene029127:CDS | 55.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | - | chr1.3:78620537-78620556 | None:intergenic | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | + | chr1.3:78620491-78620510 | MS.gene029127:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | + | chr1.3:78620485-78620504 | MS.gene029127:CDS | 60.0% | |
| GCCACCCTCGCAAACCCTTC+CGG | - | chr1.3:78620399-78620418 | None:intergenic | 65.0% | |
| GGAAGGGTTTGCGAGGGTGG+CGG | + | chr1.3:78620398-78620417 | MS.gene029127:CDS | 65.0% | |
| GGCGGAGAAGATGCCACAGG+TGG | + | chr1.3:78620416-78620435 | MS.gene029127:CDS | 65.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | + | chr1.3:78620395-78620414 | MS.gene029127:CDS | 65.0% | |
| !! | GGTGGCGGAGAAGATGCCAC+AGG | + | chr1.3:78620413-78620432 | MS.gene029127:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 78619574 | 78620902 | 78619574 | ID=MS.gene029127 |
| chr1.3 | mRNA | 78619574 | 78620902 | 78619574 | ID=MS.gene029127.t1;Parent=MS.gene029127 |
| chr1.3 | exon | 78619574 | 78619798 | 78619574 | ID=MS.gene029127.t1.exon1;Parent=MS.gene029127.t1 |
| chr1.3 | CDS | 78619574 | 78619798 | 78619574 | ID=cds.MS.gene029127.t1;Parent=MS.gene029127.t1 |
| chr1.3 | exon | 78619937 | 78620902 | 78619937 | ID=MS.gene029127.t1.exon2;Parent=MS.gene029127.t1 |
| chr1.3 | CDS | 78619937 | 78620902 | 78619937 | ID=cds.MS.gene029127.t1;Parent=MS.gene029127.t1 |
| Gene Sequence |
| Protein sequence |
