Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029252.t1 | RHN82593.1 | 94 | 367 | 22 | 0 | 4 | 370 | 102 | 468 | 3.70E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029252.t1 | Q8GWA9 | 51.2 | 363 | 168 | 4 | 4 | 366 | 152 | 505 | 1.6e-101 | 370.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029252.t1 | A0A396K3J9 | 94.0 | 367 | 22 | 0 | 4 | 370 | 102 | 468 | 2.7e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042910 | MS.gene029252 | PPI |
| MS.gene73119 | MS.gene029252 | PPI |
| MS.gene035805 | MS.gene029252 | PPI |
| MS.gene93974 | MS.gene029252 | PPI |
| MS.gene064542 | MS.gene029252 | PPI |
| MS.gene022192 | MS.gene029252 | PPI |
| MS.gene72613 | MS.gene029252 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029252.t1 | MTR_1g113720 | 90.463 | 367 | 21 | 1 | 4 | 370 | 102 | 454 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029252.t1 | AT2G17033 | 51.240 | 363 | 168 | 4 | 4 | 366 | 117 | 470 | 1.95e-128 | 377 |
| MS.gene029252.t1 | AT2G17033 | 51.240 | 363 | 168 | 4 | 4 | 366 | 152 | 505 | 3.93e-128 | 377 |
| MS.gene029252.t1 | AT2G17033 | 51.240 | 363 | 168 | 4 | 4 | 366 | 151 | 504 | 4.53e-128 | 377 |
| MS.gene029252.t1 | AT2G17033 | 51.240 | 363 | 168 | 4 | 4 | 366 | 148 | 501 | 6.44e-128 | 377 |
Find 88 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTGGGTTCAGCTTATT+TGG | 0.208986 | 1.4:+86958516 | MS.gene029252:CDS |
| AATATGATTCTTTCAAGTTT+TGG | 0.242120 | 1.4:+86958208 | MS.gene029252:CDS |
| GGATTCTAAAGAGGTGAAAT+TGG | 0.277238 | 1.4:+86958480 | MS.gene029252:CDS |
| TGAAGTAGCTTCGGAAATTA+AGG | 0.315472 | 1.4:-86957798 | None:intergenic |
| CTTACAAGGATGAGGAATTC+TGG | 0.337094 | 1.4:+86958265 | MS.gene029252:CDS |
| TGTTGTGGATTTGAATGATT+TGG | 0.343073 | 1.4:+86958351 | MS.gene029252:CDS |
| AAGGTAAGGCTGTCAAAATT+TGG | 0.346114 | 1.4:+86958749 | MS.gene029252:CDS |
| GTTGATGAAATGGAGAATAA+TGG | 0.350749 | 1.4:+86958160 | MS.gene029252:CDS |
| GCCGGTTTGAGAAGCGCGTT+TGG | 0.359029 | 1.4:-86957882 | None:intergenic |
| CTTATTTGGTTATGTTGCTT+TGG | 0.360164 | 1.4:+86958530 | MS.gene029252:CDS |
| AGTATGTGGAAATGGTTTCT+TGG | 0.378531 | 1.4:+86958242 | MS.gene029252:CDS |
| GGAAATTAAGGTCTGGGATT+CGG | 0.380524 | 1.4:-86957786 | None:intergenic |
| TTTGTATGGATATGGAAGAT+TGG | 0.382413 | 1.4:+86958111 | MS.gene029252:CDS |
| GCCTCGTGAGGCTGAGAATC+TGG | 0.382565 | 1.4:+86958015 | MS.gene029252:CDS |
| CGGTGTAGCGTTTGTGTTTG+TGG | 0.383943 | 1.4:-86957766 | None:intergenic |
| TTGATGAAATGGAGAATAAT+GGG | 0.391709 | 1.4:+86958161 | MS.gene029252:CDS |
| ATGGGAAGCTACGGTGGTTA+AGG | 0.401506 | 1.4:+86958414 | MS.gene029252:CDS |
| TTGTATGGATATGGAAGATT+GGG | 0.404726 | 1.4:+86958112 | MS.gene029252:CDS |
| GAACAGAGTTGTTGATGAAA+TGG | 0.410686 | 1.4:+86958150 | MS.gene029252:CDS |
| TTTGGTTATGTTGCTTTGGT+TGG | 0.411930 | 1.4:+86958534 | MS.gene029252:CDS |
| TGAGGCTGAGAATCTGGTTC+GGG | 0.416550 | 1.4:+86958021 | MS.gene029252:CDS |
| AGCGTTTGTGTTTGTGGAGT+AGG | 0.421612 | 1.4:-86957760 | None:intergenic |
| TCACGAGGAGTATGTGGAAA+TGG | 0.423732 | 1.4:+86958234 | MS.gene029252:CDS |
| AGCTTCGGAAATTAAGGTCT+GGG | 0.429865 | 1.4:-86957792 | None:intergenic |
| GCTTATGAATCCATGATTAG+TGG | 0.441949 | 1.4:+86957974 | MS.gene029252:CDS |
| GCGTTTGTGTTTGTGGAGTA+GGG | 0.442569 | 1.4:-86957759 | None:intergenic |
| TCTCTTCTATGCAAAACTCT+TGG | 0.446048 | 1.4:+86957850 | MS.gene029252:CDS |
| GTGAGGCTGAGAATCTGGTT+CGG | 0.450440 | 1.4:+86958020 | MS.gene029252:CDS |
| GGTTATGTTGCTTTGGTTGG+AGG | 0.453621 | 1.4:+86958537 | MS.gene029252:CDS |
| TAGCTTCGGAAATTAAGGTC+TGG | 0.456742 | 1.4:-86957793 | None:intergenic |
| CTGCTTTGTTGCCAAAGGTA+AGG | 0.456812 | 1.4:+86958735 | MS.gene029252:CDS |
| CTGAAATCACTGTGGTCTGT+GGG | 0.457071 | 1.4:+86958605 | MS.gene029252:CDS |
| TCCAAACGCGCTTCTCAAAC+CGG | 0.458542 | 1.4:+86957881 | MS.gene029252:CDS |
| CAACATTCCTCATTATCGTT+GGG | 0.462227 | 1.4:-86958333 | None:intergenic |
| GTGGAGTAGGGTGATTAAAT+CGG | 0.462337 | 1.4:-86957747 | None:intergenic |
| AAAGTCCACTCAGGATTGAT+AGG | 0.466016 | 1.4:+86958701 | MS.gene029252:CDS |
| TTAAATCGGCGATGATGGTT+GGG | 0.470625 | 1.4:-86957733 | None:intergenic |
| ATCACTGTGGTCTGTGGGGT+TGG | 0.474623 | 1.4:+86958610 | MS.gene029252:CDS |
| GGTGATTAAATCGGCGATGA+TGG | 0.475107 | 1.4:-86957738 | None:intergenic |
| TGCACACAATCCACTAATCA+TGG | 0.475560 | 1.4:-86957984 | None:intergenic |
| TCTTTAAGCAATACTTTGAC+CGG | 0.476216 | 1.4:-86958661 | None:intergenic |
| ATTAAATCGGCGATGATGGT+TGG | 0.492033 | 1.4:-86957734 | None:intergenic |
| AAATGGTTTCTTGGCTTACA+AGG | 0.492833 | 1.4:+86958251 | MS.gene029252:CDS |
| AGAGTTGTTGAATGTGTGTA+TGG | 0.492964 | 1.4:+86958387 | MS.gene029252:CDS |
| TTGAAGAGGAAGTGTGAAGA+AGG | 0.494562 | 1.4:-86957934 | None:intergenic |
| CGTTGGGCAAGAATTTGAAA+CGG | 0.501944 | 1.4:-86958317 | None:intergenic |
| TTATAAGTTCTAACAGAAAA+CGG | 0.505009 | 1.4:-86958292 | None:intergenic |
| AAATTTGGTTATGTGAATTG+AGG | 0.506066 | 1.4:+86958764 | MS.gene029252:CDS |
| ACAACATTCCTCATTATCGT+TGG | 0.508259 | 1.4:-86958334 | None:intergenic |
| GGATTTGCATGGATTTCACC+TGG | 0.508564 | 1.4:+86958501 | MS.gene029252:CDS |
| TGGAATTCACGAGGAGTATG+TGG | 0.512841 | 1.4:+86958228 | MS.gene029252:CDS |
| TTTCTTGGCTTACAAGGATG+AGG | 0.513035 | 1.4:+86958257 | MS.gene029252:CDS |
| TGAATGTGTGTATGGAAGGA+TGG | 0.520905 | 1.4:+86958395 | MS.gene029252:CDS |
| TTTAAACAAACAGATGGTGG+TGG | 0.536003 | 1.4:+86958046 | MS.gene029252:CDS |
| GCTGAAATCACTGTGGTCTG+TGG | 0.537614 | 1.4:+86958604 | MS.gene029252:CDS |
| TTTCGATGAGGTGATGGTGT+GGG | 0.539150 | 1.4:+86958459 | MS.gene029252:CDS |
| ATTCTTGCCCAACGATAATG+AGG | 0.542535 | 1.4:+86958326 | MS.gene029252:CDS |
| GAGGTGAAATTGGATTTGCA+TGG | 0.550734 | 1.4:+86958490 | MS.gene029252:CDS |
| CGGGAATTTAAACAAACAGA+TGG | 0.561502 | 1.4:+86958040 | MS.gene029252:CDS |
| GCGTTTGACGTAAATTGAAG+AGG | 0.567328 | 1.4:-86957948 | None:intergenic |
| TTGTTGAATGTGTGTATGGA+AGG | 0.568777 | 1.4:+86958391 | MS.gene029252:CDS |
| GATTTGCATGGATTTCACCT+GGG | 0.577909 | 1.4:+86958502 | MS.gene029252:CDS |
| CAGACCACAGTGATTTCAGC+AGG | 0.584643 | 1.4:-86958601 | None:intergenic |
| AACGATAATGAGGAATGTTG+TGG | 0.586263 | 1.4:+86958336 | MS.gene029252:CDS |
| GGTTGGAGGAGATGCAGAAG+AGG | 0.586274 | 1.4:+86958551 | MS.gene029252:CDS |
| ACTGGCTGCTTTGTTGCCAA+AGG | 0.597676 | 1.4:+86958730 | MS.gene029252:CDS |
| TTAAACAAACAGATGGTGGT+GGG | 0.600043 | 1.4:+86958047 | MS.gene029252:CDS |
| GACTTGAATTCAAAAGCAGA+AGG | 0.600743 | 1.4:-86958085 | None:intergenic |
| AGAATAAGCGAAATCAAAGC+CGG | 0.605755 | 1.4:-86957900 | None:intergenic |
| AAGTGTGAAGAAGGTTGTTG+AGG | 0.610689 | 1.4:-86957925 | None:intergenic |
| GAATGTGTGTATGGAAGGAT+GGG | 0.610715 | 1.4:+86958396 | MS.gene029252:CDS |
| GCGAATCACAATGGTACACA+TGG | 0.610730 | 1.4:+86957708 | MS.gene029252:CDS |
| CAATGTGAGAGGAGAATCGC+CGG | 0.620006 | 1.4:+86958642 | MS.gene029252:CDS |
| GAATTTAAACAAACAGATGG+TGG | 0.622742 | 1.4:+86958043 | MS.gene029252:CDS |
| TGAAGATGAAAAGTCCACTC+AGG | 0.630228 | 1.4:+86958692 | MS.gene029252:CDS |
| ACCAGATTCTCAGCCTCACG+AGG | 0.633510 | 1.4:-86958016 | None:intergenic |
| TATGGAAGGATGGGAAGCTA+CGG | 0.639377 | 1.4:+86958405 | MS.gene029252:CDS |
| GATGGTGTGGGATTCTAAAG+AGG | 0.643782 | 1.4:+86958471 | MS.gene029252:CDS |
| TGAAATCACTGTGGTCTGTG+GGG | 0.648087 | 1.4:+86958606 | MS.gene029252:CDS |
| GGAAGGATGGGAAGCTACGG+TGG | 0.648287 | 1.4:+86958408 | MS.gene029252:CDS |
| GATTAGTGGATTGTGTGCAA+TGG | 0.654519 | 1.4:+86957988 | MS.gene029252:CDS |
| TAAGAATAAGCGAATCACAA+TGG | 0.660243 | 1.4:+86957699 | MS.gene029252:CDS |
| TTCTTCCTATCAATCCTGAG+TGG | 0.663898 | 1.4:-86958706 | None:intergenic |
| GGAAAGCATAGCAATGTGAG+AGG | 0.667903 | 1.4:+86958631 | MS.gene029252:CDS |
| AGGATTGATAGGAAGAACAC+TGG | 0.687654 | 1.4:+86958712 | MS.gene029252:CDS |
| TGCAATGGATAAGCCTCGTG+AGG | 0.694549 | 1.4:+86958003 | MS.gene029252:CDS |
| TAACCAAATAAGCTGAACCC+AGG | 0.706791 | 1.4:-86958519 | None:intergenic |
| GATTCCTGCTGAAATCACTG+TGG | 0.811897 | 1.4:+86958597 | MS.gene029252:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATAAAATTCACAA+CGG | + | chr1.4:86957082-86957101 | MS.gene029252:intron | 10.0% |
| !!! | AAATGTTAATGTTATTTTTT+AGG | - | chr1.4:86956374-86956393 | None:intergenic | 10.0% |
| !!! | TTATTTTCAAAAATGTTTAT+GGG | - | chr1.4:86957207-86957226 | None:intergenic | 10.0% |
| !!! | TTTATTTTCAAAAATGTTTA+TGG | - | chr1.4:86957208-86957227 | None:intergenic | 10.0% |
| !! | TTGTAAGTTATTAATTTAAG+AGG | - | chr1.4:86956175-86956194 | None:intergenic | 15.0% |
| !!! | TATTTTCAAAAATGTTTATG+GGG | - | chr1.4:86957206-86957225 | None:intergenic | 15.0% |
| !!! | TTTTTGAGAATATGAAAAAT+TGG | - | chr1.4:86957001-86957020 | None:intergenic | 15.0% |
| !! | TCAAACATATCAAATAAAAC+TGG | - | chr1.4:86957042-86957061 | None:intergenic | 20.0% |
| !! | TTTATTCTTTAATCCAAACA+CGG | - | chr1.4:86957180-86957199 | None:intergenic | 20.0% |
| !!! | AAATGTAATTTTGATACAAG+CGG | - | chr1.4:86956150-86956169 | None:intergenic | 20.0% |
| !!! | AATATGATTCTTTCAAGTTT+TGG | + | chr1.4:86958208-86958227 | MS.gene029252:CDS | 20.0% |
| !!! | GTTTTTCTTCTTCTTTTAAA+CGG | + | chr1.4:86956248-86956267 | MS.gene029252:intron | 20.0% |
| !!! | TTATAAGTTCTAACAGAAAA+CGG | - | chr1.4:86958295-86958314 | None:intergenic | 20.0% |
| ! | AAAAAAACATTAGAGTTGAG+AGG | + | chr1.4:86957310-86957329 | MS.gene029252:intron | 25.0% |
| ! | AAAAAAGTTATGTTGCTGAA+AGG | + | chr1.4:86956405-86956424 | MS.gene029252:intron | 25.0% |
| ! | AAATCAGAAGGAAAAAAACA+AGG | + | chr1.4:86956905-86956924 | MS.gene029252:intron | 25.0% |
| ! | AAATTTGGTTATGTGAATTG+AGG | + | chr1.4:86958764-86958783 | MS.gene029252:CDS | 25.0% |
| ! | AACAATGACCAAAAACAAAA+AGG | - | chr1.4:86956809-86956828 | None:intergenic | 25.0% |
| ! | AATACCAACAATTGCTATAT+TGG | - | chr1.4:86956630-86956649 | None:intergenic | 25.0% |
| ! | CTACTTATATCAGAAAAAGA+AGG | + | chr1.4:86957287-86957306 | MS.gene029252:intron | 25.0% |
| ! | GAATTTACGAATGAGATATT+CGG | - | chr1.4:86957496-86957515 | None:intergenic | 25.0% |
| ! | GATAAAAGTTCATGTTAAGA+TGG | + | chr1.4:86956484-86956503 | MS.gene029252:intron | 25.0% |
| ! | GTCTCATAAGTAATTTAGTA+AGG | - | chr1.4:86956733-86956752 | None:intergenic | 25.0% |
| ! | TAAAATTCACAACGGTTAAA+AGG | + | chr1.4:86957090-86957109 | MS.gene029252:intron | 25.0% |
| ! | TCATAAGTAATTTAGTAAGG+CGG | - | chr1.4:86956730-86956749 | None:intergenic | 25.0% |
| ! | TTGATGAAATGGAGAATAAT+GGG | + | chr1.4:86958161-86958180 | MS.gene029252:CDS | 25.0% |
| !! | AAGTCTATTTTGTATGGATA+TGG | + | chr1.4:86958103-86958122 | MS.gene029252:CDS | 25.0% |
| !! | AATCAGGTTTTTCATTGAAT+CGG | + | chr1.4:86956696-86956715 | MS.gene029252:intron | 25.0% |
| !! | GAAGAAGAAAAACTTGTTTA+TGG | - | chr1.4:86956241-86956260 | None:intergenic | 25.0% |
| !! | GAATTCAAGTCTATTTTGTA+TGG | + | chr1.4:86958097-86958116 | MS.gene029252:CDS | 25.0% |
| !! | TACTTGTCCTAATTTTCAAT+GGG | - | chr1.4:86956563-86956582 | None:intergenic | 25.0% |
| !! | TCAATAGAAAATGTGGTTTT+CGG | + | chr1.4:86956847-86956866 | MS.gene029252:intron | 25.0% |
| !! | TTTTAAACGGTACATTATTG+AGG | + | chr1.4:86956261-86956280 | MS.gene029252:intron | 25.0% |
| !!! | TTTTTTCCTTCTGATTTTCT+CGG | - | chr1.4:86956902-86956921 | None:intergenic | 25.0% |
| AAACAAATTCAAACCGTGTT+TGG | + | chr1.4:86957164-86957183 | MS.gene029252:intron | 30.0% | |
| AAATGAGATGAGGGTAATTT+GGG | - | chr1.4:86957634-86957653 | None:intergenic | 30.0% | |
| ATTGATATGCACAAGAAATC+AGG | + | chr1.4:86956680-86956699 | MS.gene029252:intron | 30.0% | |
| GAAAATTAGGACAAGTACAA+GGG | + | chr1.4:86956566-86956585 | MS.gene029252:intron | 30.0% | |
| GAATTTAAACAAACAGATGG+TGG | + | chr1.4:86958043-86958062 | MS.gene029252:CDS | 30.0% | |
| GAGATTATGAAATGAGATGA+GGG | - | chr1.4:86957643-86957662 | None:intergenic | 30.0% | |
| TAAGAATAAGCGAATCACAA+TGG | + | chr1.4:86957699-86957718 | MS.gene029252:CDS | 30.0% | |
| TATTTGACCAACAAAACAAG+CGG | + | chr1.4:86956646-86956665 | MS.gene029252:intron | 30.0% | |
| TCTTTAAGCAATACTTTGAC+CGG | - | chr1.4:86958664-86958683 | None:intergenic | 30.0% | |
| TGAAAATTAGGACAAGTACA+AGG | + | chr1.4:86956565-86956584 | MS.gene029252:intron | 30.0% | |
| TGAACTAAGAGATAAGAAGT+TGG | + | chr1.4:86956307-86956326 | MS.gene029252:intron | 30.0% | |
| TGAGGTTAGAATGATTACTA+CGG | - | chr1.4:86956785-86956804 | None:intergenic | 30.0% | |
| TGTTGTGGATTTGAATGATT+TGG | + | chr1.4:86958351-86958370 | MS.gene029252:CDS | 30.0% | |
| TTGTATGGATATGGAAGATT+GGG | + | chr1.4:86958112-86958131 | MS.gene029252:CDS | 30.0% | |
| TTTGTATGGATATGGAAGAT+TGG | + | chr1.4:86958111-86958130 | MS.gene029252:CDS | 30.0% | |
| ! | ACTTGTCCTAATTTTCAATG+GGG | - | chr1.4:86956562-86956581 | None:intergenic | 30.0% |
| ! | ATAGAACTTTGGATTTTGAG+TGG | - | chr1.4:86956970-86956989 | None:intergenic | 30.0% |
| ! | ATCAGGTTTTTCATTGAATC+GGG | + | chr1.4:86956697-86956716 | MS.gene029252:intron | 30.0% |
| ! | CAATAGAAAATGTGGTTTTC+GGG | + | chr1.4:86956848-86956867 | MS.gene029252:intron | 30.0% |
| ! | CTTATTTGGTTATGTTGCTT+TGG | + | chr1.4:86958530-86958549 | MS.gene029252:CDS | 30.0% |
| ! | GTACTTGTCCTAATTTTCAA+TGG | - | chr1.4:86956564-86956583 | None:intergenic | 30.0% |
| ! | GTTGATGAAATGGAGAATAA+TGG | + | chr1.4:86958160-86958179 | MS.gene029252:CDS | 30.0% |
| ! | TTTTCACCCCATTGAAAATT+AGG | + | chr1.4:86956553-86956572 | MS.gene029252:intron | 30.0% |
| !!! | AACCTCATCCTTTTTGTTTT+TGG | + | chr1.4:86956798-86956817 | MS.gene029252:intron | 30.0% |
| !!! | GTTTTTTTTAAGACGAAGCT+GGG | - | chr1.4:86957397-86957416 | None:intergenic | 30.0% |
| !!! | TGTTTTTTTTAAGACGAAGC+TGG | - | chr1.4:86957398-86957417 | None:intergenic | 30.0% |
| AAACTAATCGAGTGCAAGAT+TGG | + | chr1.4:86956521-86956540 | MS.gene029252:intron | 35.0% | |
| AAATGGTTTCTTGGCTTACA+AGG | + | chr1.4:86958251-86958270 | MS.gene029252:CDS | 35.0% | |
| AACGATAATGAGGAATGTTG+TGG | + | chr1.4:86958336-86958355 | MS.gene029252:CDS | 35.0% | |
| AACTTTCCGAGAAAATCAGA+AGG | + | chr1.4:86956893-86956912 | MS.gene029252:intron | 35.0% | |
| AAGGTAAGGCTGTCAAAATT+TGG | + | chr1.4:86958749-86958768 | MS.gene029252:CDS | 35.0% | |
| AAGTTCATGTTAAGATGGAG+CGG | + | chr1.4:86956489-86956508 | MS.gene029252:intron | 35.0% | |
| AATGAGATGAGGGTAATTTG+GGG | - | chr1.4:86957633-86957652 | None:intergenic | 35.0% | |
| ACAACATTCCTCATTATCGT+TGG | - | chr1.4:86958337-86958356 | None:intergenic | 35.0% | |
| ACGAATGAGATATTCGGTAT+TGG | - | chr1.4:86957490-86957509 | None:intergenic | 35.0% | |
| AGAATAAGCGAAATCAAAGC+CGG | - | chr1.4:86957903-86957922 | None:intergenic | 35.0% | |
| AGAGTTGTTGAATGTGTGTA+TGG | + | chr1.4:86958387-86958406 | MS.gene029252:CDS | 35.0% | |
| AGTATGTGGAAATGGTTTCT+TGG | + | chr1.4:86958242-86958261 | MS.gene029252:CDS | 35.0% | |
| AGTTCAAAGCAAGATGAAAG+AGG | + | chr1.4:86956338-86956357 | MS.gene029252:intron | 35.0% | |
| ATTTGACCAACAAAACAAGC+GGG | + | chr1.4:86956647-86956666 | MS.gene029252:intron | 35.0% | |
| CAACATTCCTCATTATCGTT+GGG | - | chr1.4:86958336-86958355 | None:intergenic | 35.0% | |
| CATGCCAATATAGCAATTGT+TGG | + | chr1.4:86956623-86956642 | MS.gene029252:intron | 35.0% | |
| CCATGTCTCAATAGAAAATG+TGG | + | chr1.4:86956840-86956859 | MS.gene029252:intron | 35.0% | |
| CGGGAATTTAAACAAACAGA+TGG | + | chr1.4:86958040-86958059 | MS.gene029252:CDS | 35.0% | |
| GAAATGAGATGAGGGTAATT+TGG | - | chr1.4:86957635-86957654 | None:intergenic | 35.0% | |
| GACCAAAAACAAAAAGGATG+AGG | - | chr1.4:86956803-86956822 | None:intergenic | 35.0% | |
| GACTTGAATTCAAAAGCAGA+AGG | - | chr1.4:86958088-86958107 | None:intergenic | 35.0% | |
| GAGAAAAGAGTTAACTTACG+GGG | - | chr1.4:86957611-86957630 | None:intergenic | 35.0% | |
| GCTTATGAATCCATGATTAG+TGG | + | chr1.4:86957974-86957993 | MS.gene029252:CDS | 35.0% | |
| GGAGAAAAGAGTTAACTTAC+GGG | - | chr1.4:86957612-86957631 | None:intergenic | 35.0% | |
| GGAGATTATGAAATGAGATG+AGG | - | chr1.4:86957644-86957663 | None:intergenic | 35.0% | |
| GGGAGAAAAGAGTTAACTTA+CGG | - | chr1.4:86957613-86957632 | None:intergenic | 35.0% | |
| TAAACGGTACATTATTGAGG+TGG | + | chr1.4:86956264-86956283 | MS.gene029252:intron | 35.0% | |
| TCTCTTCTATGCAAAACTCT+TGG | + | chr1.4:86957850-86957869 | MS.gene029252:CDS | 35.0% | |
| TGAAGTAGCTTCGGAAATTA+AGG | - | chr1.4:86957801-86957820 | None:intergenic | 35.0% | |
| TGATTACTACGGTCCTTAAA+TGG | - | chr1.4:86956774-86956793 | None:intergenic | 35.0% | |
| TGGTTGAAACGATAGAACTT+TGG | - | chr1.4:86956981-86957000 | None:intergenic | 35.0% | |
| TTAAATGGATAGGGTGGAAA+GGG | - | chr1.4:86956759-86956778 | None:intergenic | 35.0% | |
| TTGTTGAATGTGTGTATGGA+AGG | + | chr1.4:86958391-86958410 | MS.gene029252:CDS | 35.0% | |
| TTTCTTGTGCATATCAATCC+TGG | - | chr1.4:86956678-86956697 | None:intergenic | 35.0% | |
| ! | CCACATTTTCTATTGAGACA+TGG | - | chr1.4:86956843-86956862 | None:intergenic | 35.0% |
| ! | CTGATTTTCTCGGAAAGTTT+CGG | - | chr1.4:86956892-86956911 | None:intergenic | 35.0% |
| ! | GAACAGAGTTGTTGATGAAA+TGG | + | chr1.4:86958150-86958169 | MS.gene029252:CDS | 35.0% |
| ! | GGATTCTAAAGAGGTGAAAT+TGG | + | chr1.4:86958480-86958499 | MS.gene029252:CDS | 35.0% |
| ! | GTACATTATTGAGGTGGATT+GGG | + | chr1.4:86956270-86956289 | MS.gene029252:intron | 35.0% |
| ! | GTGTAATGTGATTTTCGATG+AGG | + | chr1.4:86958447-86958466 | MS.gene029252:CDS | 35.0% |
| ! | TTAAACAAACAGATGGTGGT+GGG | + | chr1.4:86958047-86958066 | MS.gene029252:CDS | 35.0% |
| ! | TTTAAACAAACAGATGGTGG+TGG | + | chr1.4:86958046-86958065 | MS.gene029252:CDS | 35.0% |
| !! | AAGAAATGGAAGGGTTAGTT+TGG | - | chr1.4:86957665-86957684 | None:intergenic | 35.0% |
| !! | AATTTTGACAGCCTTACCTT+TGG | - | chr1.4:86958749-86958768 | None:intergenic | 35.0% |
| !! | ATATTCGGTATTGGTGTTTG+TGG | - | chr1.4:86957481-86957500 | None:intergenic | 35.0% |
| !! | TTTGGTTATGTTGCTTTGGT+TGG | + | chr1.4:86958534-86958553 | MS.gene029252:CDS | 35.0% |
| !!! | GTTGAGTTTTGAAGTAGCTT+CGG | - | chr1.4:86957810-86957829 | None:intergenic | 35.0% |
| !!! | TTCAAGTTTTGGAATTCACG+AGG | + | chr1.4:86958219-86958238 | MS.gene029252:CDS | 35.0% |
| AAAAGAGTTAACTTACGGGG+AGG | - | chr1.4:86957608-86957627 | None:intergenic | 40.0% | |
| AAAGAGTTAACTTACGGGGA+GGG | - | chr1.4:86957607-86957626 | None:intergenic | 40.0% | |
| AAAGTCCACTCAGGATTGAT+AGG | + | chr1.4:86958701-86958720 | MS.gene029252:CDS | 40.0% | |
| AAGTGTGAAGAAGGTTGTTG+AGG | - | chr1.4:86957928-86957947 | None:intergenic | 40.0% | |
| ACAAGTACAAGGGATGATGA+AGG | + | chr1.4:86956576-86956595 | MS.gene029252:intron | 40.0% | |
| ACTACGGTCCTTAAATGGAT+AGG | - | chr1.4:86956769-86956788 | None:intergenic | 40.0% | |
| AGCTGCAACAAGAAATGGAA+GGG | - | chr1.4:86957674-86957693 | None:intergenic | 40.0% | |
| AGCTTCGGAAATTAAGGTCT+GGG | - | chr1.4:86957795-86957814 | None:intergenic | 40.0% | |
| AGGATTGATAGGAAGAACAC+TGG | + | chr1.4:86958712-86958731 | MS.gene029252:CDS | 40.0% | |
| AGTTCATGTTAAGATGGAGC+GGG | + | chr1.4:86956490-86956509 | MS.gene029252:intron | 40.0% | |
| ATTCTTGCCCAACGATAATG+AGG | + | chr1.4:86958326-86958345 | MS.gene029252:CDS | 40.0% | |
| CGTTGGGCAAGAATTTGAAA+CGG | - | chr1.4:86958320-86958339 | None:intergenic | 40.0% | |
| CTACGGTCCTTAAATGGATA+GGG | - | chr1.4:86956768-86956787 | None:intergenic | 40.0% | |
| CTTAAATGGATAGGGTGGAA+AGG | - | chr1.4:86956760-86956779 | None:intergenic | 40.0% | |
| CTTACAAGGATGAGGAATTC+TGG | + | chr1.4:86958265-86958284 | MS.gene029252:CDS | 40.0% | |
| CTTTCCACCCTATCCATTTA+AGG | + | chr1.4:86956758-86956777 | MS.gene029252:intron | 40.0% | |
| GAATGTGTGTATGGAAGGAT+GGG | + | chr1.4:86958396-86958415 | MS.gene029252:CDS | 40.0% | |
| GAGGTGAAATTGGATTTGCA+TGG | + | chr1.4:86958490-86958509 | MS.gene029252:CDS | 40.0% | |
| GATTTGCATGGATTTCACCT+GGG | + | chr1.4:86958502-86958521 | MS.gene029252:CDS | 40.0% | |
| GCGTTTGACGTAAATTGAAG+AGG | - | chr1.4:86957951-86957970 | None:intergenic | 40.0% | |
| GGTACATTATTGAGGTGGAT+TGG | + | chr1.4:86956269-86956288 | MS.gene029252:intron | 40.0% | |
| GTGGAGTAGGGTGATTAAAT+CGG | - | chr1.4:86957750-86957769 | None:intergenic | 40.0% | |
| GTTGCACTCTAACGAAACAA+GGG | + | chr1.4:86957430-86957449 | MS.gene029252:intron | 40.0% | |
| TAACCAAATAAGCTGAACCC+AGG | - | chr1.4:86958522-86958541 | None:intergenic | 40.0% | |
| TAGCTTCGGAAATTAAGGTC+TGG | - | chr1.4:86957796-86957815 | None:intergenic | 40.0% | |
| TGAAGATGAAAAGTCCACTC+AGG | + | chr1.4:86958692-86958711 | MS.gene029252:CDS | 40.0% | |
| TGAATGTGTGTATGGAAGGA+TGG | + | chr1.4:86958395-86958414 | MS.gene029252:CDS | 40.0% | |
| TGCACACAATCCACTAATCA+TGG | - | chr1.4:86957987-86958006 | None:intergenic | 40.0% | |
| TGTAGAGCTGCAACAAGAAA+TGG | - | chr1.4:86957679-86957698 | None:intergenic | 40.0% | |
| TTCTTCCTATCAATCCTGAG+TGG | - | chr1.4:86958709-86958728 | None:intergenic | 40.0% | |
| TTTCGTTAGAGTGCAACGAA+TGG | - | chr1.4:86957427-86957446 | None:intergenic | 40.0% | |
| TTTCTTGGCTTACAAGGATG+AGG | + | chr1.4:86958257-86958276 | MS.gene029252:CDS | 40.0% | |
| ! | AGGTTTTTCATTGAATCGGG+TGG | + | chr1.4:86956700-86956719 | MS.gene029252:intron | 40.0% |
| ! | ATTAAATCGGCGATGATGGT+TGG | - | chr1.4:86957737-86957756 | None:intergenic | 40.0% |
| ! | GGAAATTAAGGTCTGGGATT+CGG | - | chr1.4:86957789-86957808 | None:intergenic | 40.0% |
| ! | GGTTTTTCATTGAATCGGGT+GGG | + | chr1.4:86956701-86956720 | MS.gene029252:intron | 40.0% |
| ! | TGTGATTTTCGATGAGGTGA+TGG | + | chr1.4:86958453-86958472 | MS.gene029252:CDS | 40.0% |
| ! | TTAAATCGGCGATGATGGTT+GGG | - | chr1.4:86957736-86957755 | None:intergenic | 40.0% |
| ! | TTGAAGAGGAAGTGTGAAGA+AGG | - | chr1.4:86957937-86957956 | None:intergenic | 40.0% |
| !! | GATTAGTGGATTGTGTGCAA+TGG | + | chr1.4:86957988-86958007 | MS.gene029252:CDS | 40.0% |
| !! | TTGTGGTTGAGAGTTTTGTG+AGG | - | chr1.4:86957464-86957483 | None:intergenic | 40.0% |
| !!! | TTTTAAGACGAAGCTGGGTT+TGG | - | chr1.4:86957392-86957411 | None:intergenic | 40.0% |
| AGCGTTTGTGTTTGTGGAGT+AGG | - | chr1.4:86957763-86957782 | None:intergenic | 45.0% | |
| AGTGAGAGTGGAGAGTAGTA+CGG | - | chr1.4:86957538-86957557 | None:intergenic | 45.0% | |
| AGTGGAGAGTAGTACGGATT+TGG | - | chr1.4:86957532-86957551 | None:intergenic | 45.0% | |
| CGTTGCACTCTAACGAAACA+AGG | + | chr1.4:86957429-86957448 | MS.gene029252:intron | 45.0% | |
| CTGAAATCACTGTGGTCTGT+GGG | + | chr1.4:86958605-86958624 | MS.gene029252:CDS | 45.0% | |
| GAGCTGCAACAAGAAATGGA+AGG | - | chr1.4:86957675-86957694 | None:intergenic | 45.0% | |
| GATTCCTGCTGAAATCACTG+TGG | + | chr1.4:86958597-86958616 | MS.gene029252:CDS | 45.0% | |
| GCGAATCACAATGGTACACA+TGG | + | chr1.4:86957708-86957727 | MS.gene029252:CDS | 45.0% | |
| GCGTTTGTGTTTGTGGAGTA+GGG | - | chr1.4:86957762-86957781 | None:intergenic | 45.0% | |
| GCTATATTGGCATGCTAGCA+GGG | - | chr1.4:86956617-86956636 | None:intergenic | 45.0% | |
| GGATTTGCATGGATTTCACC+TGG | + | chr1.4:86958501-86958520 | MS.gene029252:CDS | 45.0% | |
| GGTGATTAAATCGGCGATGA+TGG | - | chr1.4:86957741-86957760 | None:intergenic | 45.0% | |
| GTGGAGAGTAGTACGGATTT+GGG | - | chr1.4:86957531-86957550 | None:intergenic | 45.0% | |
| TATGGAAGGATGGGAAGCTA+CGG | + | chr1.4:86958405-86958424 | MS.gene029252:CDS | 45.0% | |
| TCACCTGGGTTCAGCTTATT+TGG | + | chr1.4:86958516-86958535 | MS.gene029252:CDS | 45.0% | |
| TGAAATCACTGTGGTCTGTG+GGG | + | chr1.4:86958606-86958625 | MS.gene029252:CDS | 45.0% | |
| TGCTATATTGGCATGCTAGC+AGG | - | chr1.4:86956618-86956637 | None:intergenic | 45.0% | |
| ! | ACCAACAAAACAAGCGGGTT+GGG | + | chr1.4:86956652-86956671 | MS.gene029252:intron | 45.0% |
| ! | CTGCTTTGTTGCCAAAGGTA+AGG | + | chr1.4:86958735-86958754 | MS.gene029252:CDS | 45.0% |
| ! | GATGGTGTGGGATTCTAAAG+AGG | + | chr1.4:86958471-86958490 | MS.gene029252:CDS | 45.0% |
| ! | GGAAAGCATAGCAATGTGAG+AGG | + | chr1.4:86958631-86958650 | MS.gene029252:CDS | 45.0% |
| ! | TCACGAGGAGTATGTGGAAA+TGG | + | chr1.4:86958234-86958253 | MS.gene029252:CDS | 45.0% |
| ! | TGGAATTCACGAGGAGTATG+TGG | + | chr1.4:86958228-86958247 | MS.gene029252:CDS | 45.0% |
| ! | TTTCGATGAGGTGATGGTGT+GGG | + | chr1.4:86958459-86958478 | MS.gene029252:CDS | 45.0% |
| !! | GGTTATGTTGCTTTGGTTGG+AGG | + | chr1.4:86958537-86958556 | MS.gene029252:CDS | 45.0% |
| !! | TTTTCGATGAGGTGATGGTG+TGG | + | chr1.4:86958458-86958477 | MS.gene029252:CDS | 45.0% |
| ATATTGGCATGCTAGCAGGG+AGG | - | chr1.4:86956614-86956633 | None:intergenic | 50.0% | |
| ATGGGAAGCTACGGTGGTTA+AGG | + | chr1.4:86958414-86958433 | MS.gene029252:CDS | 50.0% | |
| CAATGTGAGAGGAGAATCGC+CGG | + | chr1.4:86958642-86958661 | MS.gene029252:CDS | 50.0% | |
| CAGACCACAGTGATTTCAGC+AGG | - | chr1.4:86958604-86958623 | None:intergenic | 50.0% | |
| CGGTCCTTAAATGGATAGGG+TGG | - | chr1.4:86956765-86956784 | None:intergenic | 50.0% | |
| CGGTGTAGCGTTTGTGTTTG+TGG | - | chr1.4:86957769-86957788 | None:intergenic | 50.0% | |
| GACCAACAAAACAAGCGGGT+TGG | + | chr1.4:86956651-86956670 | MS.gene029252:intron | 50.0% | |
| GAGTAGTACGGATTTGGGTG+AGG | - | chr1.4:86957526-86957545 | None:intergenic | 50.0% | |
| GCTGAAATCACTGTGGTCTG+TGG | + | chr1.4:86958604-86958623 | MS.gene029252:CDS | 50.0% | |
| GTGAGGCTGAGAATCTGGTT+CGG | + | chr1.4:86958020-86958039 | MS.gene029252:CDS | 50.0% | |
| TCCAAACGCGCTTCTCAAAC+CGG | + | chr1.4:86957881-86957900 | MS.gene029252:CDS | 50.0% | |
| TGCAATGGATAAGCCTCGTG+AGG | + | chr1.4:86958003-86958022 | MS.gene029252:CDS | 50.0% | |
| ! | ACTGGCTGCTTTGTTGCCAA+AGG | + | chr1.4:86958730-86958749 | MS.gene029252:CDS | 50.0% |
| ! | TGAGGCTGAGAATCTGGTTC+GGG | + | chr1.4:86958021-86958040 | MS.gene029252:CDS | 50.0% |
| ACCAGATTCTCAGCCTCACG+AGG | - | chr1.4:86958019-86958038 | None:intergenic | 55.0% | |
| AGAGAGGAGGTGAGTGAGAG+TGG | - | chr1.4:86957550-86957569 | None:intergenic | 55.0% | |
| ATCACTGTGGTCTGTGGGGT+TGG | + | chr1.4:86958610-86958629 | MS.gene029252:CDS | 55.0% | |
| GGTTGGAGGAGATGCAGAAG+AGG | + | chr1.4:86958551-86958570 | MS.gene029252:CDS | 55.0% | |
| ! | AGAAGAGAGGTGGTGGTGAG+TGG | - | chr1.4:86957580-86957599 | None:intergenic | 55.0% |
| ! | AGCTGGGTTTGGAGTTGAGG+AGG | - | chr1.4:86957381-86957400 | None:intergenic | 55.0% |
| ! | CGAAGCTGGGTTTGGAGTTG+AGG | - | chr1.4:86957384-86957403 | None:intergenic | 55.0% |
| ! | TGGGTTTGGAGTTGAGGAGG+AGG | - | chr1.4:86957378-86957397 | None:intergenic | 55.0% |
| !!! | GCCCAACCCGCTTGTTTTGT+TGG | - | chr1.4:86956656-86956675 | None:intergenic | 55.0% |
| GCCTCGTGAGGCTGAGAATC+TGG | + | chr1.4:86958015-86958034 | MS.gene029252:CDS | 60.0% | |
| GGAAGGATGGGAAGCTACGG+TGG | + | chr1.4:86958408-86958427 | MS.gene029252:CDS | 60.0% | |
| TTGGCATGCTAGCAGGGAGG+AGG | - | chr1.4:86956611-86956630 | None:intergenic | 60.0% | |
| ! | AGAGAGGTGGTGGTGAGTGG+TGG | - | chr1.4:86957577-86957596 | None:intergenic | 60.0% |
| ! | AGGTGGTGGTGAGTGGTGGT+CGG | - | chr1.4:86957573-86957592 | None:intergenic | 60.0% |
| !! | CAAAACAAGCGGGTTGGGCC+AGG | + | chr1.4:86956657-86956676 | MS.gene029252:intron | 60.0% |
| !! | GCCGGTTTGAGAAGCGCGTT+TGG | - | chr1.4:86957885-86957904 | None:intergenic | 60.0% |
| GAGTGGTGGTCGGAGAGAGG+AGG | - | chr1.4:86957563-86957582 | None:intergenic | 65.0% | |
| GCATGCTAGCAGGGAGGAGG+CGG | - | chr1.4:86956608-86956627 | None:intergenic | 65.0% | |
| GGAGGGCGAGAGAAGAGAGG+TGG | - | chr1.4:86957590-86957609 | None:intergenic | 65.0% | |
| GGGCGAGAGAAGAGAGGTGG+TGG | - | chr1.4:86957587-86957606 | None:intergenic | 65.0% | |
| GGTGAGTGGTGGTCGGAGAG+AGG | - | chr1.4:86957566-86957585 | None:intergenic | 65.0% | |
| CGGGGAGGGCGAGAGAAGAG+AGG | - | chr1.4:86957593-86957612 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86956144 | 86958795 | 86956144 | ID=MS.gene029252 |
| chr1.4 | mRNA | 86956144 | 86958795 | 86956144 | ID=MS.gene029252.t1;Parent=MS.gene029252 |
| chr1.4 | exon | 86956144 | 86956152 | 86956144 | ID=MS.gene029252.t1.exon1;Parent=MS.gene029252.t1 |
| chr1.4 | CDS | 86956144 | 86956152 | 86956144 | ID=cds.MS.gene029252.t1;Parent=MS.gene029252.t1 |
| chr1.4 | exon | 86957692 | 86958795 | 86957692 | ID=MS.gene029252.t1.exon2;Parent=MS.gene029252.t1 |
| chr1.4 | CDS | 86957692 | 86958795 | 86957692 | ID=cds.MS.gene029252.t1;Parent=MS.gene029252.t1 |
| Gene Sequence |
| Protein sequence |
