AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029420.t1 MTR_1g110460 93.891 311 10 4 1 310 9 311 0.0 587
MS.gene029420.t1 MTR_1g086510 67.097 155 47 2 6 158 7 159 5.79e-74 228
MS.gene029420.t1 MTR_1g086530 55.090 167 71 1 18 180 33 199 1.50e-68 215
MS.gene029420.t1 MTR_2g033170 72.857 140 38 0 12 151 18 157 1.79e-67 214
MS.gene029420.t1 MTR_6g006030 73.333 120 32 0 7 126 3 122 9.66e-65 203
MS.gene029420.t1 MTR_7g035075 75.630 119 28 1 6 124 3 120 1.51e-64 202
MS.gene029420.t1 MTR_4g123040 54.067 209 88 3 13 213 19 227 2.73e-64 205
MS.gene029420.t1 MTR_1g045610 69.091 110 34 0 14 123 17 126 4.18e-53 174
MS.gene029420.t1 MTR_1g073170 66.667 108 36 0 14 121 16 123 4.96e-51 169
MS.gene029420.t1 MTR_4g063100 63.208 106 39 0 19 124 8 113 1.37e-47 160
MS.gene029420.t1 MTR_2g096380 61.468 109 42 0 15 123 3 111 3.41e-47 159
MS.gene029420.t1 MTR_5g029840 60.000 115 46 0 14 128 8 122 9.47e-46 158
MS.gene029420.t1 MTR_1g076150 60.870 115 45 0 18 132 12 126 3.06e-45 154
MS.gene029420.t1 MTR_7g117730 66.038 106 36 0 18 123 12 117 4.13e-45 154
MS.gene029420.t1 MTR_4g091490 58.120 117 49 0 12 128 7 123 1.66e-44 155
MS.gene029420.t1 MTR_4g478180 55.000 120 54 0 14 133 9 128 1.76e-44 155
MS.gene029420.t1 MTR_2g034790 40.187 214 98 6 18 223 12 203 4.47e-44 153
MS.gene029420.t1 MTR_8g027345 63.551 107 39 0 18 124 12 118 5.16e-44 152
MS.gene029420.t1 MTR_1g043080 61.111 108 42 0 14 121 8 115 6.88e-44 150
MS.gene029420.t1 MTR_5g007370 53.279 122 57 0 12 133 6 127 8.12e-44 152
MS.gene029420.t1 MTR_2g011660 57.265 117 50 0 12 128 7 123 9.32e-44 153
MS.gene029420.t1 MTR_4g125520 62.963 108 40 0 18 125 12 119 1.42e-43 151
MS.gene029420.t1 MTR_4g121460 62.500 104 39 0 18 121 12 115 2.46e-43 152
MS.gene029420.t1 MTR_3g083540 63.462 104 38 0 18 121 41 144 2.49e-43 150
MS.gene029420.t1 MTR_1g100653 58.559 111 46 0 14 124 8 118 3.02e-43 150
MS.gene029420.t1 MTR_1g062940 61.321 106 41 0 18 123 6 111 5.14e-43 147
MS.gene029420.t1 MTR_3g074520 57.391 115 49 0 14 128 8 122 5.17e-43 151
MS.gene029420.t1 MTR_3g011610 57.547 106 45 0 18 123 37 142 8.40e-43 154
MS.gene029420.t1 MTR_1g085040 52.800 125 59 0 15 139 9 133 1.37e-42 150
MS.gene029420.t1 MTR_3g052450 54.054 111 51 0 14 124 36 146 1.41e-42 154
MS.gene029420.t1 MTR_4g073420 55.200 125 56 0 14 138 8 132 1.56e-42 148
MS.gene029420.t1 MTR_3g097450 55.285 123 55 0 14 136 8 130 1.93e-42 148
MS.gene029420.t1 MTR_3g052430 56.075 107 47 0 18 124 41 147 2.27e-42 153
MS.gene029420.t1 MTR_8g042410 52.991 117 55 0 7 123 26 142 2.54e-42 153
MS.gene029420.t1 MTR_8g098860 58.182 110 46 0 15 124 9 118 3.40e-42 148
MS.gene029420.t1 MTR_7g076740 57.143 112 47 1 18 128 12 123 5.82e-42 147
MS.gene029420.t1 MTR_2g099740 50.806 124 61 0 17 140 11 134 6.44e-42 149
MS.gene029420.t1 MTR_2g089450 37.302 252 126 6 14 259 8 233 7.08e-42 145
MS.gene029420.t1 MTR_2g089620 59.459 111 45 0 18 128 12 122 8.64e-42 147
MS.gene029420.t1 MTR_3g065440 52.542 118 56 0 18 135 12 129 9.27e-42 147
MS.gene029420.t1 MTR_1g043050 58.333 108 45 0 14 121 8 115 1.06e-41 145
MS.gene029420.t1 MTR_4g065017 51.667 120 58 0 10 129 9 128 1.24e-41 147
MS.gene029420.t1 MTR_8g095390 56.522 115 50 0 14 128 8 122 1.57e-41 146
MS.gene029420.t1 MTR_0251s0050 53.600 125 55 1 18 139 13 137 2.71e-41 144
MS.gene029420.t1 MTR_0008s0390 60.952 105 41 0 18 122 13 117 3.14e-41 144
MS.gene029420.t1 MTR_2g097910 56.481 108 47 0 18 125 20 127 4.02e-41 145
MS.gene029420.t1 MTR_6g012690 57.658 111 47 0 18 128 12 122 4.31e-41 146
MS.gene029420.t1 MTR_5g078140 55.856 111 49 0 18 128 12 122 4.58e-41 145
MS.gene029420.t1 MTR_7g115650 54.545 110 50 0 18 127 12 121 4.77e-41 142
MS.gene029420.t1 MTR_7g096930 60.748 107 42 0 18 124 12 118 5.54e-41 144
MS.gene029420.t1 MTR_7g110830 52.033 123 59 0 17 139 11 133 5.54e-41 146
MS.gene029420.t1 MTR_7g011170 57.658 111 47 0 18 128 12 122 6.46e-41 144
MS.gene029420.t1 MTR_8g017440 59.048 105 43 0 17 121 11 115 1.12e-40 145
MS.gene029420.t1 MTR_4g102380 55.856 111 49 0 18 128 12 122 1.20e-40 143
MS.gene029420.t1 MTR_1g085640 51.220 123 60 0 17 139 11 133 1.48e-40 145
MS.gene029420.t1 MTR_8g031360 56.250 112 48 1 18 128 13 124 2.09e-40 143
MS.gene029420.t1 MTR_5g010020 61.000 100 39 0 15 114 9 108 2.44e-40 144
MS.gene029420.t1 MTR_2g089420 47.917 144 63 1 16 159 9 140 3.67e-40 146
MS.gene029420.t1 MTR_1g017000 55.963 109 47 1 14 121 8 116 3.95e-40 141
MS.gene029420.t1 MTR_0008s0470 59.048 105 43 0 18 122 13 117 4.68e-40 142
MS.gene029420.t1 MTR_8g017500 51.240 121 59 0 17 137 11 131 4.76e-40 143
MS.gene029420.t1 MTR_0008s0280 57.009 107 46 0 14 120 8 114 5.95e-40 140
MS.gene029420.t1 MTR_8g020490 57.407 108 46 0 17 124 7 114 6.79e-40 140
MS.gene029420.t1 MTR_4g082230 54.167 120 55 0 14 133 8 127 8.13e-40 144
MS.gene029420.t1 MTR_3g028740 53.982 113 52 0 11 123 15 127 9.10e-40 142
MS.gene029420.t1 MTR_4g082290 54.167 120 55 0 14 133 8 127 9.21e-40 144
MS.gene029420.t1 MTR_8g017540 56.075 107 47 0 15 121 55 161 9.28e-40 144
MS.gene029420.t1 MTR_5g079670 49.587 121 61 0 14 134 7 127 1.24e-39 138
MS.gene029420.t1 MTR_6g009430 47.200 125 66 0 14 138 8 132 2.73e-39 141
MS.gene029420.t1 MTR_4g485530 43.827 162 78 2 20 173 14 170 3.34e-39 137
MS.gene029420.t1 MTR_1g021230 53.774 106 49 0 18 123 57 162 4.16e-39 143
MS.gene029420.t1 MTR_1g100667 56.250 112 48 1 19 129 14 125 4.18e-39 139
MS.gene029420.t1 MTR_2g064160 54.286 105 48 0 17 121 10 114 6.16e-39 139
MS.gene029420.t1 MTR_3g461490 52.174 115 55 0 14 128 8 122 8.15e-39 139
MS.gene029420.t1 MTR_7g010210 37.727 220 88 5 18 212 12 207 1.20e-38 139
MS.gene029420.t1 MTR_3g077110 47.143 140 68 2 17 155 11 145 1.48e-38 139
MS.gene029420.t1 MTR_7g010210 37.727 220 88 5 18 212 12 207 2.27e-38 137
MS.gene029420.t1 MTR_1g112760 50.420 119 59 0 15 133 10 128 2.76e-38 135
MS.gene029420.t1 MTR_7g111290 61.224 98 38 0 17 114 11 108 3.08e-38 139
MS.gene029420.t1 MTR_4g100720 56.481 108 47 0 18 125 13 120 3.75e-38 133
MS.gene029420.t1 MTR_4g105130 50.420 119 59 0 15 133 9 127 4.20e-38 138
MS.gene029420.t1 MTR_0063s0090 51.327 113 55 0 14 126 8 120 1.88e-37 133
MS.gene029420.t1 MTR_3g039990 46.269 134 66 2 18 146 13 145 3.68e-37 135
MS.gene029420.t1 MTR_7g087130 50.442 113 56 0 14 126 8 120 5.99e-37 135
MS.gene029420.t1 MTR_2g067420 54.808 104 47 0 14 117 10 113 6.86e-37 134
MS.gene029420.t1 MTR_6g055910 47.619 126 65 1 8 132 4 129 9.58e-37 133
MS.gene029420.t1 MTR_8g017390 55.660 106 46 1 17 121 11 116 1.75e-36 136
MS.gene029420.t1 MTR_8g017340 49.219 128 62 2 12 138 8 133 2.59e-36 136
MS.gene029420.t1 MTR_8g017350 48.837 129 63 2 12 139 8 134 3.33e-36 137
MS.gene029420.t1 MTR_6g012180 56.566 99 43 0 18 116 12 110 4.74e-36 132
MS.gene029420.t1 MTR_4g057635 55.046 109 48 1 14 121 8 116 5.85e-36 132
MS.gene029420.t1 MTR_4g063100 72.000 75 21 0 50 124 10 84 6.88e-36 129
MS.gene029420.t1 MTR_2g088170 52.830 106 50 0 18 123 29 134 8.24e-36 134
MS.gene029420.t1 MTR_0140s0030 52.885 104 49 0 18 121 13 116 1.04e-35 131
MS.gene029420.t1 MTR_0489s0020 52.885 104 49 0 18 121 13 116 1.04e-35 131
MS.gene029420.t1 MTR_5g042030 51.351 111 54 0 18 128 7 117 1.70e-35 130
MS.gene029420.t1 MTR_7g109320 56.190 105 46 0 18 122 12 116 1.92e-35 131
MS.gene029420.t1 MTR_5g079120 46.269 134 70 1 1 132 42 175 1.95e-35 130
MS.gene029420.t1 MTR_6g090405 53.211 109 50 1 14 121 8 116 3.21e-35 128
MS.gene029420.t1 MTR_8g006470 45.614 114 61 1 13 125 5 118 7.29e-35 128
MS.gene029420.t1 MTR_2g096380 68.354 79 25 0 45 123 14 92 1.43e-34 125
MS.gene029420.t1 MTR_5g078910 53.333 105 49 0 18 122 7 111 1.79e-34 127
MS.gene029420.t1 MTR_1g083630 49.558 113 57 0 11 123 5 117 1.87e-34 132
MS.gene029420.t1 MTR_1g017140 55.238 105 46 1 18 121 12 116 3.21e-34 127
MS.gene029420.t1 MTR_7g102110 50.909 110 53 1 18 126 12 121 5.21e-34 125
MS.gene029420.t1 MTR_2g095520 56.000 100 43 1 18 116 12 111 5.98e-34 126
MS.gene029420.t1 MTR_5g079290 53.846 104 48 0 18 121 17 120 6.78e-34 125
MS.gene029420.t1 MTR_5g014990 54.286 105 47 1 18 121 12 116 7.61e-34 126
MS.gene029420.t1 MTR_5g078800 54.286 105 48 0 18 122 7 111 7.96e-34 125
MS.gene029420.t1 MTR_3g103570 55.238 105 46 1 18 121 12 116 8.99e-34 127
MS.gene029420.t1 MTR_4g097570 51.240 121 46 2 18 125 12 132 2.85e-33 124
MS.gene029420.t1 MTR_0247s0040 53.922 102 47 0 18 119 7 108 5.08e-33 120
MS.gene029420.t1 MTR_5g079220 52.885 104 49 0 18 121 21 124 5.74e-33 123
MS.gene029420.t1 MTR_8g060940 55.446 101 45 0 18 118 7 107 6.53e-33 122
MS.gene029420.t1 MTR_0001s0360 53.333 105 49 0 18 122 7 111 7.95e-33 122
MS.gene029420.t1 MTR_5g078950 54.902 102 46 0 18 119 7 108 8.91e-33 122
MS.gene029420.t1 MTR_5g078860 53.333 105 49 0 18 122 7 111 9.02e-33 123
MS.gene029420.t1 MTR_0197s0010 53.846 104 48 0 22 125 5 108 1.93e-32 120
MS.gene029420.t1 MTR_7g017260 52.336 107 49 1 18 122 25 131 3.54e-32 120
MS.gene029420.t1 MTR_5g088080 48.544 103 52 1 19 120 13 115 5.19e-32 120
MS.gene029420.t1 MTR_5g088150 48.544 103 52 1 19 120 13 115 5.19e-32 120
MS.gene029420.t1 MTR_5g488210 48.544 103 52 1 19 120 13 115 5.19e-32 120
MS.gene029420.t1 MTR_5g088640 48.544 103 52 1 19 120 13 115 5.21e-32 120
MS.gene029420.t1 MTR_5g062790 45.872 109 58 1 17 124 8 116 8.29e-32 120
MS.gene029420.t1 MTR_4g097570 50.820 122 46 3 18 125 12 133 9.69e-32 120
MS.gene029420.t1 MTR_5g488170 48.544 103 52 1 19 120 13 115 1.45e-31 118
MS.gene029420.t1 MTR_4g128670 56.000 100 43 1 18 116 12 111 1.55e-31 120
MS.gene029420.t1 MTR_0193s0090 47.826 115 55 1 18 132 7 116 3.53e-31 116
MS.gene029420.t1 MTR_5g078930 53.465 101 47 0 19 119 10 110 3.38e-30 114
MS.gene029420.t1 MTR_4g029540 41.441 111 64 1 14 123 6 116 2.38e-29 114
MS.gene029420.t1 MTR_5g088610 42.593 108 61 1 17 123 8 115 3.59e-28 112
MS.gene029420.t1 MTR_5g049190 35.570 149 88 2 20 168 19 159 1.06e-27 108
MS.gene029420.t1 MTR_7g061330 46.667 105 55 1 17 121 110 213 1.90e-27 112
MS.gene029420.t1 MTR_7g461410 46.667 105 55 1 17 121 110 213 1.90e-27 112
MS.gene029420.t1 MTR_7g061330 46.667 105 55 1 17 121 74 177 3.33e-27 111
MS.gene029420.t1 MTR_3g045430 43.243 111 63 0 18 128 13 123 3.45e-27 108
MS.gene029420.t1 MTR_6g055910 53.933 89 40 1 45 132 12 100 4.95e-27 106
MS.gene029420.t1 MTR_5g016510 41.284 109 63 1 20 128 5 112 1.97e-26 106
MS.gene029420.t1 MTR_5g007300 57.143 77 33 0 18 94 64 140 6.72e-26 100
MS.gene029420.t1 MTR_7g037260 32.314 229 132 7 20 240 145 358 8.93e-26 105
MS.gene029420.t1 MTR_4g019370 42.718 103 58 1 20 122 38 139 1.03e-25 105
MS.gene029420.t1 MTR_7g111290 67.692 65 21 0 50 114 2 66 1.16e-25 104
MS.gene029420.t1 MTR_3g101290 41.748 103 59 1 20 122 37 138 1.64e-25 102
MS.gene029420.t1 MTR_4g105660 40.984 122 68 3 1 121 162 280 1.67e-25 105
MS.gene029420.t1 MTR_3g077650 33.333 159 99 3 20 178 181 332 4.01e-25 104
MS.gene029420.t1 MTR_6g015455 42.453 106 60 1 20 125 5 109 6.12e-25 105
MS.gene029420.t1 MTR_5g070020 43.269 104 58 1 18 121 120 222 9.40e-25 102
MS.gene029420.t1 MTR_6g027340 43.396 106 59 1 20 125 16 120 1.01e-24 99.4
MS.gene029420.t1 MTR_1g085880 44.545 110 59 2 18 125 11 120 1.64e-24 98.6
MS.gene029420.t1 MTR_4g094982 40.777 103 60 1 20 122 5 106 2.20e-24 100
MS.gene029420.t1 MTR_5g041570 37.086 151 81 3 10 155 119 260 3.39e-24 102
MS.gene029420.t1 MTR_6g027360 41.379 116 67 1 10 125 68 182 4.04e-24 100
MS.gene029420.t1 MTR_3g110028 40.952 105 61 1 17 121 82 185 4.36e-24 102
MS.gene029420.t1 MTR_3g110028 34.000 100 64 2 20 118 33 131 4.86e-12 67.0
MS.gene029420.t1 MTR_1g026870 40.952 105 61 1 17 121 82 185 4.65e-24 102
MS.gene029420.t1 MTR_1g026870 34.000 100 64 2 20 118 33 131 8.51e-12 66.2
MS.gene029420.t1 MTR_4g128190 40.367 109 51 2 18 125 11 106 7.80e-24 97.8
MS.gene029420.t1 MTR_1g085770 44.545 110 59 2 18 125 11 120 8.67e-24 99.0
MS.gene029420.t1 MTR_7g061550 36.986 146 83 3 20 158 7 150 1.58e-23 99.4
MS.gene029420.t1 MTR_3g463400 41.346 104 60 1 18 121 131 233 3.38e-23 99.4
MS.gene029420.t1 MTR_7g451170 31.163 215 139 6 13 224 185 393 5.23e-23 98.6
MS.gene029420.t1 MTR_6g074860 29.825 228 122 7 20 237 4 203 9.33e-23 95.1
MS.gene029420.t1 MTR_4g082040 36.029 136 78 2 20 155 105 231 3.25e-22 96.3
MS.gene029420.t1 MTR_7g035350 42.342 111 59 2 23 133 228 333 1.53e-21 94.7
MS.gene029420.t1 MTR_7g450950 41.237 97 56 1 20 116 157 252 1.81e-21 93.2
MS.gene029420.t1 MTR_5g010650 44.444 99 54 1 16 114 106 203 2.34e-21 94.4
MS.gene029420.t1 MTR_1g057980 37.226 137 76 3 13 149 73 199 2.95e-21 92.0
MS.gene029420.t1 MTR_5g082910 40.594 101 59 1 14 114 13 112 4.94e-21 91.3
MS.gene029420.t1 MTR_8g468380 38.686 137 80 3 1 135 1 135 8.13e-21 92.4
MS.gene029420.t1 MTR_7g037130 31.019 216 117 7 20 224 145 339 8.70e-21 91.7
MS.gene029420.t1 MTR_4g088015 42.105 95 54 1 20 114 221 314 1.44e-20 91.7
MS.gene029420.t1 MTR_7g086960 40.000 105 62 1 20 124 89 192 4.22e-20 89.7
MS.gene029420.t1 MTR_3g089045 39.130 115 69 1 20 134 16 129 4.47e-20 88.6
MS.gene029420.t1 MTR_6g027370 38.655 119 69 2 7 125 89 203 5.44e-20 89.4
MS.gene029420.t1 MTR_5g038910 41.584 101 58 1 23 123 29 128 7.48e-20 89.7
MS.gene029420.t1 MTR_5g038910 41.584 101 58 1 23 123 29 128 1.02e-19 89.0
MS.gene029420.t1 MTR_4g063100 71.429 49 14 0 76 124 1 49 2.62e-19 84.3
MS.gene029420.t1 MTR_2g096380 70.833 48 14 0 76 123 1 48 1.18e-18 82.0
MS.gene029420.t1 MTR_0023s0210 44.156 77 43 0 18 94 7 83 3.19e-16 72.8
MS.gene029420.t1 MTR_6g055910 50.000 58 28 1 76 132 2 59 1.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029420.t1 AT1G68320 64.179 201 58 1 15 215 16 202 1.19e-85 259
MS.gene029420.t1 AT1G25340 73.856 153 40 0 1 153 1 153 6.83e-82 249
MS.gene029420.t1 AT1G25340 71.242 153 39 1 1 153 1 148 2.49e-76 235
MS.gene029420.t1 AT1G25340 71.242 153 39 1 1 153 1 148 6.26e-76 235
MS.gene029420.t1 AT1G48000 68.310 142 45 0 17 158 31 172 4.75e-71 220
MS.gene029420.t1 AT5G49620 65.190 158 55 0 7 164 15 172 2.38e-66 210
MS.gene029420.t1 AT2G47190 60.000 145 58 0 13 157 15 159 6.59e-66 208
MS.gene029420.t1 AT5G40350 57.303 178 68 4 17 186 16 193 2.05e-65 205
MS.gene029420.t1 AT3G27810 73.504 117 31 0 15 131 17 133 1.15e-64 203
MS.gene029420.t1 AT3G06490 68.085 141 45 0 11 151 12 152 6.58e-63 202
MS.gene029420.t1 AT5G49620 59.884 172 55 1 7 164 15 186 1.67e-62 201
MS.gene029420.t1 AT3G01530 47.959 196 75 4 1 187 1 178 2.83e-57 184
MS.gene029420.t1 AT3G30210 52.601 173 62 4 18 178 27 191 3.10e-53 176
MS.gene029420.t1 AT4G13480 69.725 109 33 0 15 123 3 111 2.34e-52 173
MS.gene029420.t1 AT3G24310 68.807 109 34 0 15 123 15 123 4.62e-52 172
MS.gene029420.t1 AT5G59780 63.636 110 40 0 15 124 5 114 2.54e-49 164
MS.gene029420.t1 AT3G46130 65.094 106 37 0 19 124 10 115 1.75e-48 163
MS.gene029420.t1 AT3G02940 59.167 120 49 0 14 133 8 127 1.19e-46 159
MS.gene029420.t1 AT3G02940 59.167 120 49 0 14 133 8 127 2.42e-46 159
MS.gene029420.t1 AT3G02940 59.167 120 49 0 14 133 8 127 2.42e-46 159
MS.gene029420.t1 AT5G16770 39.474 266 135 10 14 266 8 260 4.90e-46 158
MS.gene029420.t1 AT5G16770 39.474 266 135 10 14 266 8 260 4.90e-46 158
MS.gene029420.t1 AT5G16770 59.167 120 49 0 14 133 8 127 7.90e-46 158
MS.gene029420.t1 AT5G16770 59.167 120 49 0 14 133 8 127 7.90e-46 158
MS.gene029420.t1 AT5G54230 45.029 171 91 1 18 185 12 182 5.30e-45 155
MS.gene029420.t1 AT1G22640 56.098 123 54 0 14 136 8 130 6.19e-45 154
MS.gene029420.t1 AT5G40350 53.472 144 59 4 51 186 5 148 1.97e-44 149
MS.gene029420.t1 AT3G13540 55.833 120 53 0 18 137 23 142 2.27e-44 152
MS.gene029420.t1 AT5G14750 55.932 118 50 1 6 121 2 119 3.73e-44 150
MS.gene029420.t1 AT3G27810 75.309 81 20 0 51 131 4 84 5.16e-44 149
MS.gene029420.t1 AT4G21440 57.391 115 49 0 14 128 8 122 1.55e-43 152
MS.gene029420.t1 AT4G34990 56.349 126 55 0 14 139 8 133 1.59e-43 150
MS.gene029420.t1 AT1G06180 44.382 178 94 3 18 195 12 184 2.03e-43 149
MS.gene029420.t1 AT2G31180 63.462 104 38 0 18 121 12 115 2.16e-43 149
MS.gene029420.t1 AT5G40330 57.407 108 46 0 14 121 8 115 2.62e-43 148
MS.gene029420.t1 AT4G05100 57.265 117 50 0 12 128 7 123 4.11e-43 150
MS.gene029420.t1 AT1G34670 59.130 115 47 0 14 128 8 122 5.34e-43 151
MS.gene029420.t1 AT1G09540 51.969 127 61 0 15 141 9 135 5.40e-43 151
MS.gene029420.t1 AT3G53200 58.772 114 47 0 13 126 4 117 8.10e-43 147
MS.gene029420.t1 AT3G13890 57.944 107 45 0 15 121 9 115 8.63e-43 150
MS.gene029420.t1 AT5G65230 56.410 117 51 0 12 128 6 122 1.25e-42 149
MS.gene029420.t1 AT2G16720 53.968 126 58 0 14 139 8 133 1.35e-42 148
MS.gene029420.t1 AT5G10280 53.333 120 56 0 14 133 8 127 1.48e-42 149
MS.gene029420.t1 AT2G47460 61.111 108 42 0 14 121 8 115 2.29e-42 150
MS.gene029420.t1 AT4G09460 54.762 126 57 0 14 139 8 133 2.67e-42 146
MS.gene029420.t1 AT4G38620 56.557 122 53 0 14 135 8 129 2.77e-42 147
MS.gene029420.t1 AT3G11440 55.660 106 47 0 18 123 41 146 3.20e-42 152
MS.gene029420.t1 AT2G32460 55.660 106 47 0 18 123 18 123 3.22e-42 152
MS.gene029420.t1 AT3G23250 62.500 104 39 0 18 121 12 115 3.25e-42 147
MS.gene029420.t1 AT3G01140 59.459 111 45 0 18 128 12 122 3.50e-42 149
MS.gene029420.t1 AT2G32460 55.660 106 47 0 18 123 6 111 3.57e-42 152
MS.gene029420.t1 AT4G28110 56.522 115 50 0 14 128 8 122 3.81e-42 147
MS.gene029420.t1 AT1G35515 57.391 115 49 0 14 128 8 122 5.04e-42 144
MS.gene029420.t1 AT3G27920 54.054 111 51 0 11 121 7 117 5.04e-42 145
MS.gene029420.t1 AT1G57560 40.187 214 108 4 17 221 11 213 5.70e-42 147
MS.gene029420.t1 AT5G60890 52.419 124 59 0 14 137 8 131 5.92e-42 147
MS.gene029420.t1 AT3G01140 59.459 111 45 0 18 128 55 165 7.29e-42 149
MS.gene029420.t1 AT5G07690 62.136 103 39 0 18 120 12 114 8.11e-42 147
MS.gene029420.t1 AT1G18570 54.839 124 56 0 12 135 7 130 9.58e-42 148
MS.gene029420.t1 AT1G66230 52.459 122 58 0 18 139 12 133 1.11e-41 146
MS.gene029420.t1 AT5G06100 55.556 108 48 0 16 123 30 137 1.26e-41 150
MS.gene029420.t1 AT5G14340 54.310 116 53 0 18 133 24 139 1.29e-41 145
MS.gene029420.t1 AT5G61420 57.658 111 47 0 18 128 12 122 1.34e-41 148
MS.gene029420.t1 AT5G15310 58.559 111 46 0 18 128 12 122 1.44e-41 147
MS.gene029420.t1 AT5G15310 58.559 111 46 0 18 128 12 122 1.50e-41 146
MS.gene029420.t1 AT5G26660 54.701 117 53 0 17 133 11 127 1.51e-41 147
MS.gene029420.t1 AT4G22680 44.785 163 74 2 18 180 12 158 1.66e-41 145
MS.gene029420.t1 AT3G11440 55.660 106 47 0 18 123 41 146 1.91e-41 151
MS.gene029420.t1 AT3G11440 55.660 106 47 0 18 123 41 146 1.91e-41 151
MS.gene029420.t1 AT3G11440 55.660 106 47 0 18 123 41 146 1.91e-41 151
MS.gene029420.t1 AT1G63910 56.364 110 48 0 15 124 9 118 2.26e-41 147
MS.gene029420.t1 AT5G16600 56.757 111 48 0 18 128 12 122 2.66e-41 146
MS.gene029420.t1 AT5G15310 58.559 111 46 0 18 128 12 122 3.19e-41 144
MS.gene029420.t1 AT5G07700 44.633 177 80 4 18 190 12 174 3.49e-41 146
MS.gene029420.t1 AT5G07700 44.633 177 80 4 18 190 12 174 3.49e-41 146
MS.gene029420.t1 AT4G12350 44.379 169 84 3 18 185 12 171 3.67e-41 144
MS.gene029420.t1 AT5G06100 55.556 108 48 0 16 123 30 137 5.03e-41 149
MS.gene029420.t1 AT5G06100 55.556 108 48 0 16 123 30 137 5.03e-41 149
MS.gene029420.t1 AT5G06100 55.556 108 48 0 16 123 30 137 5.03e-41 149
MS.gene029420.t1 AT5G06100 55.556 108 48 0 16 123 30 137 5.03e-41 149
MS.gene029420.t1 AT1G57560 55.263 114 51 0 15 128 9 122 5.79e-41 144
MS.gene029420.t1 AT5G49330 58.407 113 47 0 18 130 12 124 7.09e-41 145
MS.gene029420.t1 AT5G12870 51.724 116 56 0 10 125 10 125 1.92e-40 142
MS.gene029420.t1 AT3G62610 59.259 108 44 0 14 121 8 115 3.51e-40 144
MS.gene029420.t1 AT4G26930 50.833 120 54 1 10 124 6 125 4.92e-40 144
MS.gene029420.t1 AT3G61250 54.955 111 50 0 18 128 12 122 5.12e-40 142
MS.gene029420.t1 AT3G13890 53.448 116 45 1 15 121 9 124 1.00e-39 143
MS.gene029420.t1 AT4G17785 54.783 115 52 0 14 128 9 123 1.01e-39 142
MS.gene029420.t1 AT4G17785 54.783 115 52 0 14 128 9 123 1.13e-39 142
MS.gene029420.t1 AT4G01680 49.600 125 63 0 15 139 9 133 1.27e-39 139
MS.gene029420.t1 AT3G08500 54.386 114 52 0 10 123 22 135 1.47e-39 142
MS.gene029420.t1 AT4G01680 50.407 123 61 0 17 139 11 133 1.59e-39 142
MS.gene029420.t1 AT5G35550 57.391 115 49 0 7 121 3 117 1.95e-39 139
MS.gene029420.t1 AT1G79180 54.955 111 50 0 14 124 10 120 2.42e-39 140
MS.gene029420.t1 AT5G52600 55.556 117 48 1 5 121 3 115 2.42e-39 137
MS.gene029420.t1 AT5G55020 54.206 107 49 0 18 124 26 132 4.18e-39 144
MS.gene029420.t1 AT1G16490 52.033 123 55 2 14 132 10 132 5.39e-39 139
MS.gene029420.t1 AT1G56160 55.556 108 48 0 14 121 10 117 9.69e-39 139
MS.gene029420.t1 AT1G74080 59.223 103 42 0 18 120 12 114 1.07e-38 139
MS.gene029420.t1 AT2G26960 53.846 104 48 0 20 123 22 125 1.87e-38 141
MS.gene029420.t1 AT3G47600 53.211 109 51 0 18 126 12 120 2.43e-38 138
MS.gene029420.t1 AT5G62320 48.120 133 62 1 14 139 9 141 3.18e-38 135
MS.gene029420.t1 AT1G74430 54.955 111 50 0 18 128 12 122 3.26e-38 136
MS.gene029420.t1 AT3G12720 49.533 107 54 0 15 121 19 125 1.26e-37 136
MS.gene029420.t1 AT5G56110 52.174 115 55 0 14 128 8 122 1.29e-37 136
MS.gene029420.t1 AT1G74650 50.427 117 58 0 14 130 8 124 2.06e-37 136
MS.gene029420.t1 AT1G08810 53.846 104 48 0 18 121 12 115 1.27e-36 132
MS.gene029420.t1 AT3G28910 51.786 112 54 0 18 129 12 123 1.66e-36 133
MS.gene029420.t1 AT3G46130 72.368 76 21 0 49 124 8 83 3.77e-36 130
MS.gene029420.t1 AT4G01680 45.255 137 63 1 15 139 9 145 4.58e-36 133
MS.gene029420.t1 AT3G28470 52.427 103 49 0 14 116 8 110 5.17e-36 132
MS.gene029420.t1 AT4G37780 54.286 105 47 1 18 121 12 116 7.31e-36 131
MS.gene029420.t1 AT5G59780 74.324 74 19 0 51 124 20 93 9.19e-36 128
MS.gene029420.t1 AT3G46130 74.324 74 19 0 51 124 20 93 1.14e-35 129
MS.gene029420.t1 AT3G12820 52.778 108 51 0 14 121 10 117 2.18e-35 128
MS.gene029420.t1 AT5G23000 53.211 109 50 1 14 121 8 116 2.19e-35 130
MS.gene029420.t1 AT1G66370 57.692 104 44 0 18 121 8 111 1.11e-34 126
MS.gene029420.t1 AT1G18710 51.351 111 54 0 18 128 12 122 6.31e-34 125
MS.gene029420.t1 AT3G48920 50.000 108 54 0 13 120 13 120 6.41e-34 125
MS.gene029420.t1 AT2G36890 50.000 120 57 2 5 121 38 157 1.80e-33 125
MS.gene029420.t1 AT2G36890 54.286 105 47 1 18 121 12 116 2.87e-33 124
MS.gene029420.t1 AT5G57620 54.286 105 47 1 18 121 12 116 3.52e-33 125
MS.gene029420.t1 AT3G49690 54.286 105 47 1 18 121 12 116 3.89e-33 124
MS.gene029420.t1 AT5G62470 33.080 263 139 5 18 244 12 273 5.14e-33 125
MS.gene029420.t1 AT1G79180 42.361 144 50 1 14 124 10 153 7.12e-33 124
MS.gene029420.t1 AT3G60460 44.737 114 62 1 14 126 7 120 9.74e-33 123
MS.gene029420.t1 AT5G52260 53.398 103 48 0 19 121 13 115 1.12e-32 122
MS.gene029420.t1 AT4G25560 51.456 103 50 0 19 121 11 113 1.94e-32 122
MS.gene029420.t1 AT5G65790 53.333 105 48 1 18 121 12 116 2.45e-32 123
MS.gene029420.t1 AT1G56650 59.615 104 42 0 18 121 8 111 2.83e-32 120
MS.gene029420.t1 AT1G66380 58.654 104 43 0 18 121 8 111 3.60e-32 117
MS.gene029420.t1 AT1G66390 59.615 104 42 0 18 121 8 111 1.62e-31 118
MS.gene029420.t1 AT5G62470 33.080 263 138 6 18 244 12 272 5.30e-31 119
MS.gene029420.t1 AT3G53200 63.158 76 28 0 51 126 9 84 5.59e-30 113
MS.gene029420.t1 AT5G26660 56.627 83 36 0 51 133 14 96 1.83e-28 112
MS.gene029420.t1 AT2G26950 43.750 112 54 1 6 117 13 115 4.08e-27 109
MS.gene029420.t1 AT5G11050 31.452 248 130 7 20 245 105 334 4.92e-27 110
MS.gene029420.t1 AT5G14750 56.098 82 31 1 45 121 4 85 9.45e-27 103
MS.gene029420.t1 AT5G35550 62.338 77 29 0 45 121 44 120 1.06e-26 106
MS.gene029420.t1 AT3G27785 45.098 102 55 1 20 121 189 289 7.60e-26 106
MS.gene029420.t1 AT3G47600 57.895 76 32 0 51 126 39 114 1.01e-25 104
MS.gene029420.t1 AT2G23290 40.708 113 66 1 10 122 3 114 1.34e-25 104
MS.gene029420.t1 AT5G11510 42.857 105 59 1 17 121 78 181 2.61e-25 106
MS.gene029420.t1 AT5G11510 42.857 105 59 1 17 121 78 181 2.61e-25 106
MS.gene029420.t1 AT5G11510 42.857 105 59 1 17 121 78 181 2.61e-25 106
MS.gene029420.t1 AT3G09370 41.509 106 61 1 17 122 127 231 2.62e-25 105
MS.gene029420.t1 AT3G09370 41.509 106 61 1 17 122 132 236 2.64e-25 105
MS.gene029420.t1 AT3G09370 41.509 106 61 1 17 122 140 244 3.29e-25 105
MS.gene029420.t1 AT5G11510 42.857 105 59 1 17 121 78 181 3.37e-25 106
MS.gene029420.t1 AT5G11510 42.857 105 59 1 17 121 78 181 3.62e-25 106
MS.gene029420.t1 AT5G02320 42.857 105 59 1 17 121 124 227 5.90e-25 105
MS.gene029420.t1 AT5G02320 42.857 105 59 1 17 121 124 227 5.90e-25 105
MS.gene029420.t1 AT5G58850 43.269 104 58 1 18 121 103 205 6.57e-25 103
MS.gene029420.t1 AT3G12820 61.765 68 26 0 54 121 2 69 6.88e-25 99.4
MS.gene029420.t1 AT5G02320 42.857 105 59 1 17 121 64 167 1.00e-24 103
MS.gene029420.t1 AT4G18770 39.655 116 69 1 18 133 215 329 1.97e-24 102
MS.gene029420.t1 AT4G37260 40.000 115 65 2 20 134 13 123 1.53e-23 98.6
MS.gene029420.t1 AT3G09230 42.241 116 62 2 20 131 55 169 2.28e-23 99.4
MS.gene029420.t1 AT1G69560 38.525 122 73 2 3 124 107 226 3.39e-23 98.2
MS.gene029420.t1 AT1G69560 38.525 122 73 2 3 124 91 210 4.17e-23 97.8
MS.gene029420.t1 AT3G55730 40.566 106 62 1 20 125 56 160 5.93e-23 98.2
MS.gene029420.t1 AT4G32730 39.048 105 63 1 17 121 84 187 1.43e-22 98.6
MS.gene029420.t1 AT4G32730 33.000 100 65 2 20 118 35 133 1.29e-11 65.9
MS.gene029420.t1 AT4G32730 39.048 105 63 1 17 121 84 187 1.43e-22 98.6
MS.gene029420.t1 AT4G32730 33.000 100 65 2 20 118 35 133 1.29e-11 65.9
MS.gene029420.t1 AT4G32730 39.048 105 63 1 17 121 84 187 1.43e-22 98.6
MS.gene029420.t1 AT4G32730 33.000 100 65 2 20 118 35 133 1.29e-11 65.9
MS.gene029420.t1 AT4G32730 39.048 105 63 1 17 121 84 187 1.43e-22 98.6
MS.gene029420.t1 AT4G32730 33.000 100 65 2 20 118 35 133 1.29e-11 65.9
MS.gene029420.t1 AT4G32730 39.048 105 63 1 17 121 84 187 1.69e-22 98.2
MS.gene029420.t1 AT4G32730 33.000 100 65 2 20 118 35 133 1.44e-11 65.5
MS.gene029420.t1 AT5G17800 38.298 141 65 4 5 124 63 202 4.82e-22 94.7
MS.gene029420.t1 AT3G29020 40.952 105 61 1 20 124 65 168 5.30e-22 92.8
MS.gene029420.t1 AT3G50060 38.835 103 62 1 20 122 6 107 6.33e-22 94.0
MS.gene029420.t1 AT3G29020 40.952 105 61 1 20 124 67 170 1.05e-21 93.6
MS.gene029420.t1 AT5G67300 38.835 103 62 1 20 122 6 107 1.76e-21 92.8
MS.gene029420.t1 AT2G37630 42.991 107 59 1 20 124 4 110 1.88e-21 93.6
MS.gene029420.t1 AT1G17950 42.857 105 59 1 20 124 5 108 2.04e-21 91.7
MS.gene029420.t1 AT2G39880 41.176 102 59 1 20 121 50 150 2.24e-21 93.6
MS.gene029420.t1 AT5G40360 38.462 104 63 1 11 114 149 251 3.21e-21 92.8
MS.gene029420.t1 AT1G22640 54.795 73 33 0 64 136 1 73 3.23e-21 89.7
MS.gene029420.t1 AT1G26780 40.187 107 63 1 18 124 96 201 4.03e-21 92.8
MS.gene029420.t1 AT1G26780 40.187 107 63 1 18 124 96 201 5.58e-21 90.9
MS.gene029420.t1 AT1G73410 45.283 106 55 2 20 124 6 109 7.42e-21 89.7
MS.gene029420.t1 AT1G73410 45.283 106 55 2 20 124 6 109 1.71e-20 87.8
MS.gene029420.t1 AT5G59780 73.469 49 13 0 76 124 1 49 2.20e-20 86.7
MS.gene029420.t1 AT1G66380 57.692 78 33 0 18 95 8 85 2.69e-20 84.7
MS.gene029420.t1 AT3G46130 73.469 49 13 0 76 124 1 49 3.01e-20 87.0
MS.gene029420.t1 AT4G33450 39.252 107 64 1 18 124 17 122 5.77e-20 87.4
MS.gene029420.t1 AT1G14350 32.584 178 97 8 23 187 28 195 8.51e-20 89.7
MS.gene029420.t1 AT1G14350 32.584 178 97 8 23 187 28 195 8.51e-20 89.7
MS.gene029420.t1 AT1G66380 61.111 72 28 0 50 121 7 78 2.07e-19 82.4
MS.gene029420.t1 AT3G23250 63.793 58 21 0 64 121 1 58 2.14e-19 85.5
MS.gene029420.t1 AT2G25230 43.000 100 53 2 23 119 29 127 9.55e-19 84.0
MS.gene029420.t1 AT5G14750 58.621 58 24 0 64 121 1 58 1.41e-18 81.3
MS.gene029420.t1 AT5G14750 58.621 58 24 0 64 121 1 58 1.41e-18 81.3
MS.gene029420.t1 AT1G18960 34.211 114 72 2 20 133 10 120 1.77e-18 84.3
MS.gene029420.t1 AT2G02820 40.196 102 60 1 23 124 33 133 3.27e-18 84.0
MS.gene029420.t1 AT2G02820 40.196 102 60 1 23 124 33 133 4.28e-18 84.7
MS.gene029420.t1 AT2G02820 40.196 102 60 1 23 124 33 133 4.37e-18 84.7
MS.gene029420.t1 AT1G71030 40.860 93 54 1 42 134 5 96 4.70e-18 81.3
MS.gene029420.t1 AT1G71030 44.872 78 43 0 57 134 5 82 8.69e-18 80.1
MS.gene029420.t1 AT4G00540 38.739 111 64 2 18 125 101 210 1.44e-17 82.8
MS.gene029420.t1 AT4G00540 38.739 111 64 2 18 125 99 208 2.62e-17 82.4
MS.gene029420.t1 AT5G39700 38.679 106 64 1 19 124 55 159 5.25e-17 78.2
MS.gene029420.t1 AT5G40430 35.433 127 74 5 6 126 38 162 3.82e-15 74.3
MS.gene029420.t1 AT3G18100 33.065 124 76 2 19 136 545 667 1.03e-13 72.0
MS.gene029420.t1 AT3G18100 33.065 124 76 2 19 136 497 619 1.48e-13 71.6
MS.gene029420.t1 AT3G18100 33.065 124 76 2 19 136 384 506 1.82e-13 71.2
MS.gene029420.t1 AT3G18100 33.065 124 76 2 19 136 332 454 2.32e-13 70.9
MS.gene029420.t1 AT1G14350 31.655 139 73 7 62 187 23 152 3.33e-12 67.0
MS.gene029420.t1 AT1G14350 31.655 139 73 7 62 187 23 152 3.33e-12 67.0
MS.gene029420.t1 AT4G25560 54.348 46 21 0 76 121 2 47 2.80e-11 62.8

Find 62 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACAAATATGAATAATTT+TGG 0.110388 1.4:-84293279 MS.gene029420:CDS
ACCTTCCAAGCCATAGTTAT+TGG 0.185410 1.4:+84292984 None:intergenic
TTTCAAGTGGCTGTGAAAAT+TGG 0.228230 1.4:+84293094 None:intergenic
TGACATAGTACTTAAATTAT+TGG 0.248289 1.4:+84293149 None:intergenic
AGAATCTATACCTGCACTTT+TGG 0.270195 1.4:+84294186 None:intergenic
CAGCTTCAATAATCCTTCTT+TGG 0.273207 1.4:-84293124 MS.gene029420:CDS
ATCTCATTATCTGTTCTTCC+TGG 0.311501 1.4:+84293459 None:intergenic
TTCATTCCAAGTGGGGTAAC+AGG 0.358561 1.4:-84293955 MS.gene029420:intron
ACATTGTTCTCAAACACATT+TGG 0.382149 1.4:+84293048 None:intergenic
ATAATGAGATAAAGAACTAT+TGG 0.389787 1.4:-84293446 MS.gene029420:CDS
ATAATTGTTCTTGTGGTGTA+AGG 0.395767 1.4:+84293990 None:intergenic
ACAACTACAAAGAAAGAGTT+TGG 0.401219 1.4:-84294319 MS.gene029420:CDS
CGCCAACTTAACATTGAATC+TGG 0.420856 1.4:-84293399 MS.gene029420:CDS
ATTGATGATACCAATAACTA+TGG 0.431411 1.4:-84292994 MS.gene029420:CDS
CCTTGATCCAATGTCTTCAA+TGG 0.434110 1.4:-84292956 MS.gene029420:CDS
AGGTTCCCTCTCTTAATGTC+AGG 0.434595 1.4:+84294010 None:intergenic
ATGCAGAAATTGTCTTGGAT+TGG 0.440218 1.4:+84293015 None:intergenic
TAGGATGAAGGAGACATAGA+AGG 0.441002 1.4:+84293204 None:intergenic
TTATTACCTGTTACCCCACT+TGG 0.442891 1.4:+84293949 None:intergenic
TTTGAGAACAATGTTTATAA+CGG 0.461212 1.4:-84293039 MS.gene029420:CDS
CCATTGAAGACATTGGATCA+AGG 0.464340 1.4:+84292956 None:intergenic
AAACTCTTTCTTTGTAGTTG+TGG 0.466467 1.4:+84294321 None:intergenic
GCCAAGATTGCTTCAAAAGA+TGG 0.466885 1.4:-84293337 MS.gene029420:CDS
TTCAAACTAAAGAAAGTGGT+TGG 0.468240 1.4:-84292906 MS.gene029420:CDS
TACCAGATTCAATGTTAAGT+TGG 0.469384 1.4:+84293397 None:intergenic
CATCAATGCAGAAATTGTCT+TGG 0.474689 1.4:+84293010 None:intergenic
TAAGTTTCCATTGAAGACAT+TGG 0.474756 1.4:+84292949 None:intergenic
TAATAGTACTTTGTGGAACA+TGG 0.484889 1.4:-84292866 MS.gene029420:CDS
AAAATTATTCATATTTGTCA+TGG 0.493144 1.4:+84293281 None:intergenic
AGGATCAATAATTGTTCTTG+TGG 0.497994 1.4:+84293983 None:intergenic
CTCGTCATGGTGAAGGTCGT+TGG 0.503722 1.4:-84294219 MS.gene029420:CDS
ACCAATAACTATGGCTTGGA+AGG 0.505112 1.4:-84292985 MS.gene029420:CDS
CCCACTTGGAATGAAGTTCA+AGG 0.506479 1.4:+84293963 None:intergenic
CAAAGAAGGATTATTGAAGC+TGG 0.514926 1.4:+84293125 None:intergenic
TTGAAACCTGACATTAAGAG+AGG 0.515821 1.4:-84294016 MS.gene029420:CDS
CCTCTCTGTGGATAGGATGA+AGG 0.522354 1.4:+84293192 None:intergenic
AAAATTGCTCAGCATTTACC+AGG 0.522850 1.4:-84293477 MS.gene029420:CDS
ATTTCAGGATTGAAGAGGAC+CGG 0.528553 1.4:-84294070 MS.gene029420:intron
TGATACCAATAACTATGGCT+TGG 0.540717 1.4:-84292989 MS.gene029420:CDS
CCAACATTTCAGGATTGAAG+AGG 0.541450 1.4:-84294075 MS.gene029420:intron
TGGTTGGATGTTAGACAACA+TGG 0.544269 1.4:-84292890 MS.gene029420:CDS
GAGTGATCAAAGCTTGGAGA+AGG 0.544388 1.4:+84293306 None:intergenic
ATGAGCTGAGAAGAGGACCT+TGG 0.544610 1.4:-84294279 MS.gene029420:CDS
TATGAATCCTCTCTGTGGAT+AGG 0.547305 1.4:+84293185 None:intergenic
ACATGGGTAATAGTACTTTG+TGG 0.553914 1.4:-84292873 MS.gene029420:CDS
ATGGAAGAGTGATCAAAGCT+TGG 0.559495 1.4:+84293300 None:intergenic
CTATCTTCTTCAAGAGTCCA+AGG 0.562500 1.4:+84294262 None:intergenic
AATTGGAAGAAATCCAAAGA+AGG 0.563837 1.4:+84293111 None:intergenic
TAAAGAACTATTGGAGAACA+AGG 0.573257 1.4:-84293437 MS.gene029420:CDS
GAAGAAAATGAGCTGAGAAG+AGG 0.586355 1.4:-84294286 MS.gene029420:CDS
TATATTGCTCGTCATGGTGA+AGG 0.594084 1.4:-84294226 MS.gene029420:CDS
CCTTGAACTTCATTCCAAGT+GGG 0.595465 1.4:-84293963 MS.gene029420:CDS
TCCTTGAACTTCATTCCAAG+TGG 0.606906 1.4:-84293964 MS.gene029420:CDS
AATATGTTAGCCAAAAGTGC+AGG 0.609544 1.4:-84294196 MS.gene029420:intron
TGAAACCTGACATTAAGAGA+GGG 0.622809 1.4:-84294015 MS.gene029420:CDS
CTTGAACTTCATTCCAAGTG+GGG 0.625251 1.4:-84293962 MS.gene029420:CDS
ATACACTATATTGCTCGTCA+TGG 0.635211 1.4:-84294232 MS.gene029420:CDS
AGTGATCAAAGCTTGGAGAA+GGG 0.637060 1.4:+84293307 None:intergenic
GCATCTATGAATCCTCTCTG+TGG 0.672798 1.4:+84293180 None:intergenic
GGTTGGATGTTAGACAACAT+GGG 0.675162 1.4:-84292889 MS.gene029420:CDS
AAAGAACTATTGGAGAACAA+GGG 0.692289 1.4:-84293436 MS.gene029420:CDS
CCTTCATCCTATCCACAGAG+AGG 0.705324 1.4:-84293192 MS.gene029420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAACTAATATCTATT+TGG + chr1.4:84293567-84293586 None:intergenic 10.0%
!! AAAATTATTCATATTTGTCA+TGG + chr1.4:84293902-84293921 None:intergenic 15.0%
!! TTTATGGTTTATTTGAAAAT+AGG - chr1.4:84293674-84293693 MS.gene029420:intron 15.0%
!!! ATGACAAATATGAATAATTT+TGG - chr1.4:84293901-84293920 MS.gene029420:intron 15.0%
!!! ATTATGTTTTTGAAAACTAT+AGG + chr1.4:84293622-84293641 None:intergenic 15.0%
!!! TAGTTTTCAAAAACATAATT+AGG - chr1.4:84293623-84293642 MS.gene029420:intron 15.0%
!! ATAATGAGATAAAGAACTAT+TGG - chr1.4:84293734-84293753 MS.gene029420:intron 20.0%
!! TGACATAGTACTTAAATTAT+TGG + chr1.4:84294034-84294053 None:intergenic 20.0%
!! TTATTTATAATTAGCCAACA+CGG - chr1.4:84293326-84293345 MS.gene029420:CDS 20.0%
!! TTTGAGAACAATGTTTATAA+CGG - chr1.4:84294141-84294160 MS.gene029420:intron 20.0%
!!! ATTCTTTTTGTACTCTTTTA+AGG - chr1.4:84293012-84293031 MS.gene029420:CDS 20.0%
!!! CAAAGAATTGAACATTTTTA+TGG - chr1.4:84293658-84293677 MS.gene029420:intron 20.0%
! ATATCTATTTGGATTGTTTG+TGG + chr1.4:84293556-84293575 None:intergenic 25.0%
! ATGGTTTATTTGAAAATAGG+TGG - chr1.4:84293677-84293696 MS.gene029420:intron 25.0%
! TTAGTTAATTCCAACATTTC+AGG - chr1.4:84293095-84293114 MS.gene029420:CDS 25.0%
!! AGACAATCCAAATACATTTT+TGG + chr1.4:84293356-84293375 None:intergenic 25.0%
!! ATTGATGATACCAATAACTA+TGG - chr1.4:84294186-84294205 MS.gene029420:intron 25.0%
!! GACAATCCAAATACATTTTT+GGG + chr1.4:84293355-84293374 None:intergenic 25.0%
!! GATTTTCAAACTAAAGAAAG+TGG - chr1.4:84294270-84294289 MS.gene029420:CDS 25.0%
AAACTCTTTCTTTGTAGTTG+TGG + chr1.4:84292862-84292881 None:intergenic 30.0%
AAAGAACTATTGGAGAACAA+GGG - chr1.4:84293744-84293763 MS.gene029420:intron 30.0%
AAATGTATTTGGATTGTCTC+TGG - chr1.4:84293357-84293376 MS.gene029420:CDS 30.0%
AATGGTTCAGATTTCAAACT+TGG + chr1.4:84293477-84293496 None:intergenic 30.0%
AATTGGAAGAAATCCAAAGA+AGG + chr1.4:84294072-84294091 None:intergenic 30.0%
ACAAATTTCACGTATTCACA+TGG + chr1.4:84293531-84293550 None:intergenic 30.0%
ACAACTACAAAGAAAGAGTT+TGG - chr1.4:84292861-84292880 MS.gene029420:CDS 30.0%
ACATTGTTCTCAAACACATT+TGG + chr1.4:84294135-84294154 None:intergenic 30.0%
AGGATCAATAATTGTTCTTG+TGG + chr1.4:84293200-84293219 None:intergenic 30.0%
ATAATTGTTCTTGTGGTGTA+AGG + chr1.4:84293193-84293212 None:intergenic 30.0%
TAAAGAACTATTGGAGAACA+AGG - chr1.4:84293743-84293762 MS.gene029420:intron 30.0%
TAAGTTTCCATTGAAGACAT+TGG + chr1.4:84294234-84294253 None:intergenic 30.0%
TAATAGTACTTTGTGGAACA+TGG - chr1.4:84294314-84294333 MS.gene029420:CDS 30.0%
TACCAGATTCAATGTTAAGT+TGG + chr1.4:84293786-84293805 None:intergenic 30.0%
TTCAAACTAAAGAAAGTGGT+TGG - chr1.4:84294274-84294293 MS.gene029420:CDS 30.0%
! AATACATTAGTGGTCTTGAA+TGG - chr1.4:84293405-84293424 MS.gene029420:CDS 30.0%
! TTGATGCTGTTAAGTGTTTT+TGG - chr1.4:84293818-84293837 MS.gene029420:intron 30.0%
!!! GAGTTTTCTGAAATTTCAAG+TGG + chr1.4:84294102-84294121 None:intergenic 30.0%
AAAATTGCTCAGCATTTACC+AGG - chr1.4:84293703-84293722 MS.gene029420:intron 35.0%
ACATGGGTAATAGTACTTTG+TGG - chr1.4:84294307-84294326 MS.gene029420:CDS 35.0%
ATACACTATATTGCTCGTCA+TGG - chr1.4:84292948-84292967 MS.gene029420:CDS 35.0%
ATCTCATTATCTGTTCTTCC+TGG + chr1.4:84293724-84293743 None:intergenic 35.0%
ATGCAGAAATTGTCTTGGAT+TGG + chr1.4:84294168-84294187 None:intergenic 35.0%
CAAAGAAGGATTATTGAAGC+TGG + chr1.4:84294058-84294077 None:intergenic 35.0%
CAGCTTCAATAATCCTTCTT+TGG - chr1.4:84294056-84294075 MS.gene029420:CDS 35.0%
CATCAATGCAGAAATTGTCT+TGG + chr1.4:84294173-84294192 None:intergenic 35.0%
TATTCACATGGTCAACACAT+CGG + chr1.4:84293519-84293538 None:intergenic 35.0%
TGAAACCTGACATTAAGAGA+GGG - chr1.4:84293165-84293184 MS.gene029420:CDS 35.0%
TGATACCAATAACTATGGCT+TGG - chr1.4:84294191-84294210 MS.gene029420:intron 35.0%
TTGAAACCTGACATTAAGAG+AGG - chr1.4:84293164-84293183 MS.gene029420:CDS 35.0%
! AATATGTTAGCCAAAAGTGC+AGG - chr1.4:84292984-84293003 MS.gene029420:CDS 35.0%
! AGAATCTATACCTGCACTTT+TGG + chr1.4:84292997-84293016 None:intergenic 35.0%
! TTTCAAGTGGCTGTGAAAAT+TGG + chr1.4:84294089-84294108 None:intergenic 35.0%
!!! TCCATCTTTTGAAGCAATCT+TGG + chr1.4:84293847-84293866 None:intergenic 35.0%
ACCTTCCAAGCCATAGTTAT+TGG + chr1.4:84294199-84294218 None:intergenic 40.0%
AGTGATCAAAGCTTGGAGAA+GGG + chr1.4:84293876-84293895 None:intergenic 40.0%
ATGGAAGAGTGATCAAAGCT+TGG + chr1.4:84293883-84293902 None:intergenic 40.0%
ATTTCAGGATTGAAGAGGAC+CGG - chr1.4:84293110-84293129 MS.gene029420:CDS 40.0%
CCAACATTTCAGGATTGAAG+AGG - chr1.4:84293105-84293124 MS.gene029420:CDS 40.0%
CCATTGAAGACATTGGATCA+AGG + chr1.4:84294227-84294246 None:intergenic 40.0%
CCTCTTCAATCCTGAAATGT+TGG + chr1.4:84293108-84293127 None:intergenic 40.0%
CCTTGAACTTCATTCCAAGT+GGG - chr1.4:84293217-84293236 MS.gene029420:CDS 40.0%
CCTTGATCCAATGTCTTCAA+TGG - chr1.4:84294224-84294243 MS.gene029420:CDS 40.0%
CGCCAACTTAACATTGAATC+TGG - chr1.4:84293781-84293800 MS.gene029420:intron 40.0%
CGGTGACCCAAAAATGTATT+TGG - chr1.4:84293346-84293365 MS.gene029420:CDS 40.0%
CTATCTTCTTCAAGAGTCCA+AGG + chr1.4:84292921-84292940 None:intergenic 40.0%
CTTGAACTTCATTCCAAGTG+GGG - chr1.4:84293218-84293237 MS.gene029420:CDS 40.0%
GAAGAAAATGAGCTGAGAAG+AGG - chr1.4:84292894-84292913 MS.gene029420:CDS 40.0%
GCCAAGATTGCTTCAAAAGA+TGG - chr1.4:84293843-84293862 MS.gene029420:intron 40.0%
GGTTGGATGTTAGACAACAT+GGG - chr1.4:84294291-84294310 MS.gene029420:CDS 40.0%
TAGGATGAAGGAGACATAGA+AGG + chr1.4:84293979-84293998 None:intergenic 40.0%
TATATTGCTCGTCATGGTGA+AGG - chr1.4:84292954-84292973 MS.gene029420:CDS 40.0%
TATGAATCCTCTCTGTGGAT+AGG + chr1.4:84293998-84294017 None:intergenic 40.0%
TCACACGGTCAATACATTAG+TGG - chr1.4:84293395-84293414 MS.gene029420:CDS 40.0%
TCATCAATCGCACATTCACA+CGG - chr1.4:84293380-84293399 MS.gene029420:CDS 40.0%
TCCTTGAACTTCATTCCAAG+TGG - chr1.4:84293216-84293235 MS.gene029420:CDS 40.0%
TGGTTGGATGTTAGACAACA+TGG - chr1.4:84294290-84294309 MS.gene029420:CDS 40.0%
TTATTACCTGTTACCCCACT+TGG + chr1.4:84293234-84293253 None:intergenic 40.0%
! ACCAATAACTATGGCTTGGA+AGG - chr1.4:84294195-84294214 MS.gene029420:intron 40.0%
AGGTTCCCTCTCTTAATGTC+AGG + chr1.4:84293173-84293192 None:intergenic 45.0%
CCCACTTGGAATGAAGTTCA+AGG + chr1.4:84293220-84293239 None:intergenic 45.0%
GAAAAAGCTGCAGACTCAGA+TGG - chr1.4:84293132-84293151 MS.gene029420:CDS 45.0%
GAGTGATCAAAGCTTGGAGA+AGG + chr1.4:84293877-84293896 None:intergenic 45.0%
GCATCTATGAATCCTCTCTG+TGG + chr1.4:84294003-84294022 None:intergenic 45.0%
GGTCGTTAGATCGGATCAAA+TGG + chr1.4:84293495-84293514 None:intergenic 45.0%
TTCATTCCAAGTGGGGTAAC+AGG - chr1.4:84293225-84293244 MS.gene029420:CDS 45.0%
!! TCTGAGTCTGCAGCTTTTTC+CGG + chr1.4:84293132-84293151 None:intergenic 45.0%
!!! ACATTTTTGGGTCACCGTGT+TGG + chr1.4:84293343-84293362 None:intergenic 45.0%
ATGAGCTGAGAAGAGGACCT+TGG - chr1.4:84292901-84292920 MS.gene029420:CDS 50.0%
CACATCGGTGGTCGTTAGAT+CGG + chr1.4:84293504-84293523 None:intergenic 50.0%
CCTCTCTGTGGATAGGATGA+AGG + chr1.4:84293991-84294010 None:intergenic 50.0%
CCTTCATCCTATCCACAGAG+AGG - chr1.4:84293988-84294007 MS.gene029420:CDS 50.0%
TCACATGGTCAACACATCGG+TGG + chr1.4:84293516-84293535 None:intergenic 50.0%
CTCGTCATGGTGAAGGTCGT+TGG - chr1.4:84292961-84292980 MS.gene029420:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 84292855 84294347 84292855 ID=MS.gene029420
chr1.4 mRNA 84292855 84294347 84292855 ID=MS.gene029420.t1;Parent=MS.gene029420
chr1.4 exon 84294197 84294347 84294197 ID=MS.gene029420.t1.exon1;Parent=MS.gene029420.t1
chr1.4 CDS 84294197 84294347 84294197 ID=cds.MS.gene029420.t1;Parent=MS.gene029420.t1
chr1.4 exon 84293956 84294085 84293956 ID=MS.gene029420.t1.exon2;Parent=MS.gene029420.t1
chr1.4 CDS 84293956 84294085 84293956 ID=cds.MS.gene029420.t1;Parent=MS.gene029420.t1
chr1.4 exon 84292855 84293506 84292855 ID=MS.gene029420.t1.exon3;Parent=MS.gene029420.t1
chr1.4 CDS 84292855 84293506 84292855 ID=cds.MS.gene029420.t1;Parent=MS.gene029420.t1
Gene Sequence

>MS.gene029420

ATGTCCACAACTACAAAGAAAGAGTTTGGTAATTCTAAAGAAGAAAATGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGTATAGATTCTTTTTGTACTCTTTTAAGGTTAGAAGAATAATATGTACAATCATATACTGTTTAACTTTATTGTTTTATTACTAGTTAATTAGTTAATTCCAACATTTCAGGATTGAAGAGGACCGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAACCTTACACCACAAGAACAATTATTGATCCTTGAACTTCATTCCAAGTGGGGTAACAGGTAATAATATAATTTATATGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATAATTAGCCAACACGGTGACCCAAAAATGTATTTGGATTGTCTCTGGTCATCAATCGCACATTCACACGGTCAATACATTAGTGGTCTTGAATGGAGATCAGAAAAGACAAAAAATAAAAATGATTTTTCTCTCTAAAGTACCAAGTTTGAAATCTGAACCATTTGATCCGATCTAACGACCACCGATGTGTTGACCATGTGAATACGTGAAATTTGTGACCACAAACAATCCAAATAGATATTAGTTAATTAATGAAATTCGTCTTTATATTTTCGCACAAAGATCCTATAGTTTTCAAAAACATAATTAGGCTTGTGCAACTTCAAAGAATTGAACATTTTTATGGTTTATTTGAAAATAGGTGGTCAAAAATTGCTCAGCATTTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACCCTTCTCCAAGCTTTGATCACTCTTCCATGACAAATATGAATAATTTTGGAAACTCTATTGAAGCTTCAACTAGTAATTCAATGTCAACAAGCTTCAATATTCCTTCTATGTCTCCTTCATCCTATCCACAGAGAGGATTCATAGATGCTTCAAGTGCCAATAATTTAAGTACTATGTCAGCCAGCTTCAATAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAATTTCAGAAAACTCAAAAAGTGCTCCAAATGTGTTTGAGAACAATGTTTATAACGGTCCAATCCAAGACAATTTCTGCATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACCTTGATCCAATGTCTTCAATGGAAACTTATGACTTTTCACAGTTTGATTTTCAAACTAAAGAAAGTGGTTGGATGTTAGACAACATGGGTAATAGTACTTTGTGGAACATGGATTCTATGTGA
Protein sequence

>MS.gene029420.t1

MSTTTKKEFGNSKEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNPSPSFDHSSMTNMNNFGNSIEASTSNSMSTSFNIPSMSPSSYPQRGFIDASSANNLSTMSASFNNPSLDFFQFSQPLEISENSKSAPNVFENNVYNGPIQDNFCIDDTNNYGLEGLNLDPMSSMETYDFSQFDFQTKESGWMLDNMGNSTLWNMDSM