Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029884.t1 | RHN79846.1 | 96.9 | 286 | 3 | 1 | 1 | 280 | 59 | 344 | 2.00E-151 | 545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029884.t1 | Q10S93 | 77.8 | 234 | 52 | 0 | 47 | 280 | 60 | 293 | 7.7e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029884.t1 | A0A072VJS4 | 96.9 | 286 | 3 | 1 | 1 | 280 | 1 | 286 | 1.4e-151 | 545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057156 | MS.gene029884 | PPI |
| MS.gene033347 | MS.gene029884 | PPI |
| MS.gene011389 | MS.gene029884 | PPI |
| MS.gene065461 | MS.gene029884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029884.t1 | MTR_1g067050 | 96.853 | 286 | 3 | 1 | 1 | 280 | 1 | 286 | 0.0 | 559 |
| MS.gene029884.t1 | MTR_7g100530 | 74.286 | 280 | 60 | 3 | 1 | 280 | 1 | 268 | 1.20e-143 | 404 |
| MS.gene029884.t1 | MTR_4g103800 | 31.683 | 202 | 120 | 4 | 49 | 245 | 31 | 219 | 1.69e-28 | 109 |
| MS.gene029884.t1 | MTR_2g461290 | 33.508 | 191 | 106 | 4 | 54 | 241 | 79 | 251 | 4.95e-25 | 104 |
| MS.gene029884.t1 | MTR_4g035170 | 31.414 | 191 | 112 | 5 | 54 | 242 | 94 | 267 | 4.24e-21 | 90.9 |
| MS.gene029884.t1 | MTR_4g103800 | 30.909 | 165 | 106 | 3 | 49 | 208 | 31 | 192 | 4.41e-21 | 88.6 |
| MS.gene029884.t1 | MTR_8g009520 | 26.699 | 206 | 105 | 5 | 44 | 247 | 19 | 180 | 1.81e-16 | 76.6 |
| MS.gene029884.t1 | MTR_4g035850 | 24.242 | 231 | 126 | 5 | 35 | 263 | 46 | 229 | 2.20e-16 | 77.0 |
| MS.gene029884.t1 | MTR_4g035850 | 24.242 | 231 | 126 | 5 | 35 | 263 | 23 | 206 | 2.59e-16 | 76.3 |
| MS.gene029884.t1 | MTR_5g068940 | 23.810 | 231 | 127 | 5 | 35 | 263 | 23 | 206 | 1.08e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029884.t1 | AT2G37250 | 67.361 | 288 | 79 | 3 | 3 | 280 | 2 | 284 | 1.33e-136 | 387 |
| MS.gene029884.t1 | AT2G39270 | 72.574 | 237 | 63 | 1 | 44 | 280 | 61 | 295 | 7.14e-110 | 320 |
| MS.gene029884.t1 | AT3G01820 | 34.529 | 223 | 110 | 4 | 48 | 269 | 63 | 250 | 5.13e-35 | 127 |
| MS.gene029884.t1 | AT5G50370 | 32.227 | 211 | 123 | 5 | 49 | 254 | 36 | 231 | 9.47e-30 | 113 |
| MS.gene029884.t1 | AT5G63400 | 31.863 | 204 | 121 | 4 | 49 | 247 | 35 | 225 | 7.94e-29 | 110 |
| MS.gene029884.t1 | AT5G35170 | 33.019 | 212 | 121 | 4 | 45 | 253 | 77 | 270 | 1.54e-28 | 114 |
| MS.gene029884.t1 | AT5G35170 | 33.019 | 212 | 121 | 4 | 45 | 253 | 77 | 270 | 1.68e-28 | 114 |
| MS.gene029884.t1 | AT5G50370 | 32.990 | 194 | 112 | 4 | 49 | 237 | 36 | 216 | 2.33e-27 | 106 |
| MS.gene029884.t1 | AT5G47840 | 31.776 | 214 | 120 | 7 | 33 | 241 | 54 | 246 | 7.19e-25 | 100 |
| MS.gene029884.t1 | AT5G47840 | 31.280 | 211 | 122 | 6 | 33 | 241 | 54 | 243 | 8.50e-25 | 100 |
| MS.gene029884.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 49 | 183 | 35 | 172 | 6.56e-23 | 93.6 |
| MS.gene029884.t1 | AT4G25280 | 27.064 | 218 | 114 | 4 | 53 | 268 | 59 | 233 | 7.99e-22 | 92.0 |
| MS.gene029884.t1 | AT4G25280 | 27.064 | 218 | 114 | 4 | 53 | 268 | 59 | 233 | 7.99e-22 | 92.0 |
| MS.gene029884.t1 | AT3G60180 | 28.302 | 212 | 102 | 5 | 44 | 251 | 19 | 184 | 1.66e-19 | 84.7 |
| MS.gene029884.t1 | AT3G60180 | 28.302 | 212 | 102 | 5 | 44 | 251 | 19 | 184 | 1.66e-19 | 84.7 |
| MS.gene029884.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene029884.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene029884.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.34e-18 | 82.0 |
| MS.gene029884.t1 | AT5G26667 | 26.866 | 201 | 102 | 4 | 53 | 251 | 20 | 177 | 1.48e-18 | 82.4 |
Find 89 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAACTTCGGCCAAGATTC+TGG | 0.217568 | 1.4:-53941617 | None:intergenic |
| CCGCAGCAGAGGAAAATTAT+TGG | 0.236642 | 1.4:+53941571 | MS.gene029884:CDS |
| CGTTGCTTCTATTGACATTA+AGG | 0.253863 | 1.4:+53941047 | MS.gene029884:CDS |
| AGCGGAGCCATGACAATTCC+AGG | 0.354690 | 1.4:-53941084 | None:intergenic |
| ATCTGGTCCACTTTCTTCCC+AGG | 0.364483 | 1.4:+53938111 | MS.gene029884:CDS |
| GAACTGGGATTTATTCTTGA+TGG | 0.380261 | 1.4:+53940451 | MS.gene029884:CDS |
| CGTGATGAGCTCTCTTCATC+TGG | 0.386900 | 1.4:+53938094 | MS.gene029884:CDS |
| TCTTAATCTTGATGATTATG+AGG | 0.408311 | 1.4:+53941646 | MS.gene029884:CDS |
| TGGGGAGGCTAAAGGTGAAC+TGG | 0.427253 | 1.4:+53940435 | MS.gene029884:CDS |
| TGGGTCTTCCTCGGTTGTCC+TGG | 0.431097 | 1.4:+53937995 | MS.gene029884:CDS |
| GGTTGTCCTGGCGTCGGTAA+AGG | 0.432318 | 1.4:+53938007 | MS.gene029884:CDS |
| GCAACTTCGGCCAAGATTCT+GGG | 0.442595 | 1.4:-53941616 | None:intergenic |
| CGGGAGGAATCCCAGAATCT+TGG | 0.448580 | 1.4:+53941606 | MS.gene029884:CDS |
| AATTGTAAAACAAGGTCAAT+TGG | 0.453568 | 1.4:+53940366 | MS.gene029884:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 1.4:-53940478 | None:intergenic |
| GGACGCGCGCGTGGAAAGGC+GGG | 0.456250 | 1.4:-53937864 | None:intergenic |
| AGCTTTGACATACAATTTGT+AGG | 0.464203 | 1.4:-53941114 | None:intergenic |
| ATTGACATTAAGGCCGAGAA+TGG | 0.474266 | 1.4:+53941057 | MS.gene029884:CDS |
| CCTTCATCTCTTCCGTCGCA+AGG | 0.489419 | 1.4:+53937885 | MS.gene029884:CDS |
| CTGAAGCAGTTGTCAAAGAA+AGG | 0.490070 | 1.4:+53941157 | MS.gene029884:CDS |
| CACGTACGGTGGGTCTTCCT+CGG | 0.490617 | 1.4:+53937986 | MS.gene029884:CDS |
| AATTCCAGGGATCCCATTCT+CGG | 0.494212 | 1.4:-53941070 | None:intergenic |
| AGCCGTCTTTCAAATCTCCT+TGG | 0.506874 | 1.4:+53938040 | MS.gene029884:CDS |
| GGAGGATTTGCAATCAGTGT+GGG | 0.507359 | 1.4:+53941013 | MS.gene029884:CDS |
| GGTGTTCCTCACATCGCCAC+TGG | 0.508449 | 1.4:+53938061 | MS.gene029884:CDS |
| CTTGATGATGGGGAGGCTAA+AGG | 0.510077 | 1.4:+53940427 | MS.gene029884:CDS |
| CGTGGAAAGGCGGGTCGTGA+AGG | 0.518854 | 1.4:-53937855 | None:intergenic |
| CCTTGCGACGGAAGAGATGA+AGG | 0.520428 | 1.4:-53937885 | None:intergenic |
| TGCTTGAGAAATGCCTTGGC+AGG | 0.520462 | 1.4:+53940992 | MS.gene029884:CDS |
| TTTCAAACCTGGGAAGAAAG+TGG | 0.524167 | 1.4:-53938118 | None:intergenic |
| TATCAAAGAGACTTGATGAT+GGG | 0.527393 | 1.4:+53940416 | MS.gene029884:CDS |
| GCGGGTCGTGAAGGCCGCCA+TGG | 0.532458 | 1.4:-53937846 | None:intergenic |
| TGCTCAGGAAATATTGGAAG+GGG | 0.532562 | 1.4:+53940921 | MS.gene029884:intron |
| TTGACATTAAGGCCGAGAAT+GGG | 0.535202 | 1.4:+53941058 | MS.gene029884:CDS |
| ATTATTGGAGTTTAACCTGC+CGG | 0.535586 | 1.4:+53941586 | MS.gene029884:CDS |
| CAAGATTCTGGGATTCCTCC+CGG | 0.535852 | 1.4:-53941605 | None:intergenic |
| CTGCGGTAAAACTCCTCCAC+AGG | 0.544059 | 1.4:-53941554 | None:intergenic |
| TATGCTCAGGAAATATTGGA+AGG | 0.545400 | 1.4:+53940919 | MS.gene029884:intron |
| TGAAGGACGCGCGCGTGGAA+AGG | 0.546781 | 1.4:-53937868 | None:intergenic |
| GCTTCGAATATACAATGAAA+CGG | 0.548251 | 1.4:+53941179 | MS.gene029884:CDS |
| CGGGTCGTGAAGGCCGCCAT+GGG | 0.548319 | 1.4:-53937845 | None:intergenic |
| TGGCGCGTGGGAGTTGAGCT+CGG | 0.549856 | 1.4:-53937921 | None:intergenic |
| TTATCAAAGAGACTTGATGA+TGG | 0.553266 | 1.4:+53940415 | MS.gene029884:CDS |
| TTGACTTGGTTATCAATCTG+AGG | 0.557110 | 1.4:+53940953 | MS.gene029884:CDS |
| AGAGATGAAGGACGCGCGCG+TGG | 0.563381 | 1.4:-53937873 | None:intergenic |
| GGAGAGGTAGCGCCTTGCGA+CGG | 0.566154 | 1.4:-53937897 | None:intergenic |
| CAACAAGACGGAATGGCGCG+TGG | 0.568499 | 1.4:-53937934 | None:intergenic |
| TTATTGGAGTTTAACCTGCC+GGG | 0.572349 | 1.4:+53941587 | MS.gene029884:CDS |
| GGGAGTTGAGCTCGGAGGAG+AGG | 0.572603 | 1.4:-53937913 | None:intergenic |
| AAGGCCGAGAATGGGATCCC+TGG | 0.573980 | 1.4:+53941066 | MS.gene029884:CDS |
| TTAAGAGCATGTAGCAACTT+CGG | 0.574130 | 1.4:-53941629 | None:intergenic |
| AGGACGCGCGCGTGGAAAGG+CGG | 0.575120 | 1.4:-53937865 | None:intergenic |
| TTCCTCGGTTGTCCTGGCGT+CGG | 0.575446 | 1.4:+53938001 | MS.gene029884:CDS |
| ATTCTGGGATTCCTCCCGGC+AGG | 0.575714 | 1.4:-53941601 | None:intergenic |
| TTGAGAAATGCCTTGGCAGG+AGG | 0.577558 | 1.4:+53940995 | MS.gene029884:CDS |
| ATGCTCAGGAAATATTGGAA+GGG | 0.580503 | 1.4:+53940920 | MS.gene029884:intron |
| AGGGGTAGCTGACATTGACT+TGG | 0.587799 | 1.4:+53940939 | MS.gene029884:CDS |
| GTACTGCTTGAGAAATGCCT+TGG | 0.592269 | 1.4:+53940988 | MS.gene029884:CDS |
| TTCCGTCTTGTTGCTCCACG+TGG | 0.592404 | 1.4:+53937944 | MS.gene029884:CDS |
| GATTGCAAATCCTCCTGCCA+AGG | 0.594641 | 1.4:-53941005 | None:intergenic |
| TAGGTGCCTTTACCGACGCC+AGG | 0.599918 | 1.4:-53938013 | None:intergenic |
| TGGGATCCCTGGAATTGTCA+TGG | 0.601248 | 1.4:+53941077 | MS.gene029884:CDS |
| CACCAAGGAGATTTGAAAGA+CGG | 0.602704 | 1.4:-53938042 | None:intergenic |
| ATTGCAGAGTCGGCCTGTGG+AGG | 0.614448 | 1.4:+53941541 | MS.gene029884:intron |
| ATCAGAAGAACAGTCACGTA+CGG | 0.616246 | 1.4:+53937972 | MS.gene029884:CDS |
| AGGAGGATTTGCAATCAGTG+TGG | 0.620162 | 1.4:+53941012 | MS.gene029884:CDS |
| GGGGAGGCTAAAGGTGAACT+GGG | 0.621129 | 1.4:+53940436 | MS.gene029884:CDS |
| CTATCAGAAATTGTAAAACA+AGG | 0.622888 | 1.4:+53940358 | MS.gene029884:CDS |
| GAGGATTTGCAATCAGTGTG+GGG | 0.624942 | 1.4:+53941014 | MS.gene029884:CDS |
| AAAGAGACTTGATGATGGGG+AGG | 0.628690 | 1.4:+53940420 | MS.gene029884:CDS |
| ATGATTGCAGAGTCGGCCTG+TGG | 0.629533 | 1.4:+53941538 | MS.gene029884:intron |
| AGATCACCAGTGGCGATGTG+AGG | 0.631554 | 1.4:-53938067 | None:intergenic |
| ATCAAAGAGACTTGATGATG+GGG | 0.636165 | 1.4:+53940417 | MS.gene029884:CDS |
| AACAAGACGGAATGGCGCGT+GGG | 0.639200 | 1.4:-53937933 | None:intergenic |
| ATTTGAAAGACGGCTAGCGT+AGG | 0.640074 | 1.4:-53938032 | None:intergenic |
| GAAGAACAGTCACGTACGGT+GGG | 0.640808 | 1.4:+53937976 | MS.gene029884:CDS |
| CAATTTGTAGGTGGAAGAAG+CGG | 0.642392 | 1.4:-53941102 | None:intergenic |
| GCGGAGCCATGACAATTCCA+GGG | 0.644856 | 1.4:-53941083 | None:intergenic |
| CGTGGAGCAACAAGACGGAA+TGG | 0.654977 | 1.4:-53937941 | None:intergenic |
| AGAAGAACAGTCACGTACGG+TGG | 0.657994 | 1.4:+53937975 | MS.gene029884:CDS |
| TTCTTCTGATCTTCACCACG+TGG | 0.659321 | 1.4:-53937959 | None:intergenic |
| AGGATTTGCAATCAGTGTGG+GGG | 0.661390 | 1.4:+53941015 | MS.gene029884:CDS |
| CACCACGTGGAGCAACAAGA+CGG | 0.662591 | 1.4:-53937946 | None:intergenic |
| TTTGACATACAATTTGTAGG+TGG | 0.663193 | 1.4:-53941111 | None:intergenic |
| ATCACGAACGAGATCACCAG+TGG | 0.681112 | 1.4:-53938077 | None:intergenic |
| TTGGAGTTTAACCTGCCGGG+AGG | 0.683112 | 1.4:+53941590 | MS.gene029884:CDS |
| TACCGACGCCAGGACAACCG+AGG | 0.695680 | 1.4:-53938003 | None:intergenic |
| CGCGTGGGAGTTGAGCTCGG+AGG | 0.738854 | 1.4:-53937918 | None:intergenic |
| TGGCGATGTGAGGAACACCA+AGG | 0.756664 | 1.4:-53938057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAAATTAATTTTTTT+TGG | + | chr1.4:53938538-53938557 | MS.gene029884:intron | 0.0% |
| !! | AAATTAAAAGAATTAAAACT+TGG | - | chr1.4:53939333-53939352 | None:intergenic | 10.0% |
| !!! | ACATTTATTTTTATTATGAT+GGG | + | chr1.4:53941306-53941325 | MS.gene029884:intron | 10.0% |
| !!! | ATTTTTTTCATTTTAAACAA+AGG | + | chr1.4:53938980-53938999 | MS.gene029884:intron | 10.0% |
| !!! | TACATTTATTTTTATTATGA+TGG | + | chr1.4:53941305-53941324 | MS.gene029884:intron | 10.0% |
| !! | AGTAGATTAAGTATTTATTA+AGG | - | chr1.4:53939724-53939743 | None:intergenic | 15.0% |
| !! | ATTAAGTATTTATTAAGGAA+CGG | - | chr1.4:53939719-53939738 | None:intergenic | 15.0% |
| !! | CAAATTTATAAAAACCTAAT+TGG | + | chr1.4:53939213-53939232 | MS.gene029884:intron | 15.0% |
| !! | CGATATTCATAAAATTTATT+TGG | - | chr1.4:53940081-53940100 | None:intergenic | 15.0% |
| !! | TACAAATCAAAACATTAAAA+AGG | - | chr1.4:53940113-53940132 | None:intergenic | 15.0% |
| !! | TATAACAAATAGTATAGATA+TGG | - | chr1.4:53939597-53939616 | None:intergenic | 15.0% |
| !!! | ATATATTTTGCAAACAAAAT+AGG | - | chr1.4:53940554-53940573 | None:intergenic | 15.0% |
| !!! | GTTATATAAGTTAGTTTAAT+TGG | + | chr1.4:53938605-53938624 | MS.gene029884:intron | 15.0% |
| !!! | TATATTTTGCAAACAAAATA+GGG | - | chr1.4:53940553-53940572 | None:intergenic | 15.0% |
| !!! | TATTTAAAATTGACATTTTC+CGG | + | chr1.4:53939689-53939708 | MS.gene029884:intron | 15.0% |
| !!! | TTTGTTCATTTATTTTTCAT+TGG | - | chr1.4:53940640-53940659 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAAAATTCCTG+AGG | + | chr1.4:53940748-53940767 | MS.gene029884:intron | 15.0% |
| !! | AAATTAAAGGAACCTAAATA+AGG | - | chr1.4:53940688-53940707 | None:intergenic | 20.0% |
| !! | AATAGTATAGATATGGTTAA+AGG | - | chr1.4:53939590-53939609 | None:intergenic | 20.0% |
| !!! | ATAAGTTTGCTTGTTTAAAA+AGG | - | chr1.4:53940850-53940869 | None:intergenic | 20.0% |
| !!! | ATATTTTGCAAACAAAATAG+GGG | - | chr1.4:53940552-53940571 | None:intergenic | 20.0% |
| !!! | ATGTCAATTTTAAATACATG+CGG | - | chr1.4:53939685-53939704 | None:intergenic | 20.0% |
| !!! | TATAAGTTAGTTTAATTGGT+AGG | + | chr1.4:53938609-53938628 | MS.gene029884:intron | 20.0% |
| !!! | TTTTAATTTTGAGCCAATTA+GGG | + | chr1.4:53939344-53939363 | MS.gene029884:intron | 20.0% |
| ! | AATTGTAAAACAAGGTCAAT+TGG | + | chr1.4:53940366-53940385 | MS.gene029884:CDS | 25.0% |
| ! | AGCTAGTAAGTCTTTAAATT+TGG | + | chr1.4:53940032-53940051 | MS.gene029884:intron | 25.0% |
| ! | ATATAGCCATTTGATATCTA+GGG | - | chr1.4:53939411-53939430 | None:intergenic | 25.0% |
| ! | ATTGATATAAAAAGAACACC+AGG | - | chr1.4:53940779-53940798 | None:intergenic | 25.0% |
| ! | CTAGGAAGTTGTATAATTAA+AGG | + | chr1.4:53939934-53939953 | MS.gene029884:intron | 25.0% |
| ! | CTATCAGAAATTGTAAAACA+AGG | + | chr1.4:53940358-53940377 | MS.gene029884:CDS | 25.0% |
| ! | GTGGTAGTTATAAAATTATG+TGG | + | chr1.4:53938773-53938792 | MS.gene029884:intron | 25.0% |
| !! | TAGTACATAACAGATTTTCA+AGG | - | chr1.4:53940880-53940899 | None:intergenic | 25.0% |
| !! | TATTTTCCAATTAGCTAAAC+AGG | - | chr1.4:53939112-53939131 | None:intergenic | 25.0% |
| !! | TCATGAATGATATTTGCTTT+TGG | + | chr1.4:53938925-53938944 | MS.gene029884:intron | 25.0% |
| !! | TCTTAATCTTGATGATTATG+AGG | + | chr1.4:53941646-53941665 | MS.gene029884:CDS | 25.0% |
| !! | TTTTTATGCTCAGGAAATAT+TGG | + | chr1.4:53940915-53940934 | MS.gene029884:intron | 25.0% |
| !!! | ATGAATGATATTTGCTTTTG+GGG | + | chr1.4:53938927-53938946 | MS.gene029884:intron | 25.0% |
| !!! | ATGTCTTTTTTAACTGGTTT+AGG | + | chr1.4:53941502-53941521 | MS.gene029884:intron | 25.0% |
| !!! | ATGTTCATGTCTTTTTTAAC+TGG | + | chr1.4:53941496-53941515 | MS.gene029884:intron | 25.0% |
| !!! | CATGAATGATATTTGCTTTT+GGG | + | chr1.4:53938926-53938945 | MS.gene029884:intron | 25.0% |
| !!! | CTTTTAATTTTGAGCCAATT+AGG | + | chr1.4:53939343-53939362 | MS.gene029884:intron | 25.0% |
| !!! | GTTGATGATGAATATGATTA+TGG | - | chr1.4:53941223-53941242 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTGTAAGTGATT+AGG | + | chr1.4:53940120-53940139 | MS.gene029884:intron | 25.0% |
| !!! | TCATTGGTTATTGCATTTTT+CGG | - | chr1.4:53940624-53940643 | None:intergenic | 25.0% |
| AAAGGGAAAACTAATAGAAC+AGG | - | chr1.4:53940260-53940279 | None:intergenic | 30.0% | |
| AATCATAGTACTCCAGTAAA+GGG | - | chr1.4:53940277-53940296 | None:intergenic | 30.0% | |
| ACGAAGTTTAGAAAACATCA+CGG | - | chr1.4:53940826-53940845 | None:intergenic | 30.0% | |
| CAGTGAGTATATCTTCAATT+TGG | + | chr1.4:53940497-53940516 | MS.gene029884:intron | 30.0% | |
| CATATAGCCATTTGATATCT+AGG | - | chr1.4:53939412-53939431 | None:intergenic | 30.0% | |
| CATGATTATTATCCAAGTGA+TGG | + | chr1.4:53938359-53938378 | MS.gene029884:intron | 30.0% | |
| CCTGAGCATAAAAAAAAGAA+AGG | - | chr1.4:53940909-53940928 | None:intergenic | 30.0% | |
| CTAAGTAATCCTTACAAAGT+CGG | - | chr1.4:53939191-53939210 | None:intergenic | 30.0% | |
| CTAGATATCAAATGGCTATA+TGG | + | chr1.4:53939410-53939429 | MS.gene029884:intron | 30.0% | |
| CTATACAAAGTGAGATATGT+TGG | - | chr1.4:53938683-53938702 | None:intergenic | 30.0% | |
| CTGATTAGGTAGGAAATTAA+AGG | - | chr1.4:53940701-53940720 | None:intergenic | 30.0% | |
| GATCTTTAAGCTACTAAGAA+CGG | - | chr1.4:53940167-53940186 | None:intergenic | 30.0% | |
| GATTCATGAATATGATACTC+CGG | - | chr1.4:53938907-53938926 | None:intergenic | 30.0% | |
| GCTTCGAATATACAATGAAA+CGG | + | chr1.4:53941179-53941198 | MS.gene029884:CDS | 30.0% | |
| GGAGTAATAACAATCAATCT+AGG | + | chr1.4:53939916-53939935 | MS.gene029884:intron | 30.0% | |
| GTTTGTAAGGATGAATTGTT+CGG | + | chr1.4:53938420-53938439 | MS.gene029884:intron | 30.0% | |
| TAATCATAGTACTCCAGTAA+AGG | - | chr1.4:53940278-53940297 | None:intergenic | 30.0% | |
| TTATCAAAGAGACTTGATGA+TGG | + | chr1.4:53940415-53940434 | MS.gene029884:CDS | 30.0% | |
| TTTCATGTGTATCTGTATCT+TGG | + | chr1.4:53938648-53938667 | MS.gene029884:intron | 30.0% | |
| TTTCTATATGATTGCAGAGT+CGG | + | chr1.4:53941531-53941550 | MS.gene029884:intron | 30.0% | |
| TTTGACATACAATTTGTAGG+TGG | - | chr1.4:53941114-53941133 | None:intergenic | 30.0% | |
| TTTGTAAGGATGAATTGTTC+GGG | + | chr1.4:53938421-53938440 | MS.gene029884:intron | 30.0% | |
| ! | AAAACTTGATAGCTCATGTA+TGG | + | chr1.4:53939236-53939255 | MS.gene029884:intron | 30.0% |
| ! | AAGAAGAAGTTTTCAAACCT+GGG | - | chr1.4:53938131-53938150 | None:intergenic | 30.0% |
| ! | AGCTATCAAGTTTTCCAATT+AGG | - | chr1.4:53939230-53939249 | None:intergenic | 30.0% |
| ! | AGCTTTGACATACAATTTGT+AGG | - | chr1.4:53941117-53941136 | None:intergenic | 30.0% |
| ! | GATAATAAGGCACCTTATTT+AGG | + | chr1.4:53940673-53940692 | MS.gene029884:intron | 30.0% |
| ! | GCAAAGGACAATTTAGTTTA+CGG | - | chr1.4:53938868-53938887 | None:intergenic | 30.0% |
| ! | TATCAAAGAGACTTGATGAT+GGG | + | chr1.4:53940416-53940435 | MS.gene029884:CDS | 30.0% |
| ! | TTAAAGACTTACTAGCTTGA+AGG | - | chr1.4:53940029-53940048 | None:intergenic | 30.0% |
| ! | TTTAGGATGTTTACCCTAAT+TGG | - | chr1.4:53939360-53939379 | None:intergenic | 30.0% |
| ! | TTTCTAATTTTGCGTGTGAT+AGG | - | chr1.4:53938229-53938248 | None:intergenic | 30.0% |
| !! | ATGAACAAATTTTGCCGATT+TGG | + | chr1.4:53940651-53940670 | MS.gene029884:intron | 30.0% |
| !! | CATTGGTTATTGCATTTTTC+GGG | - | chr1.4:53940623-53940642 | None:intergenic | 30.0% |
| !! | TGAATGATATTTGCTTTTGG+GGG | + | chr1.4:53938928-53938947 | MS.gene029884:intron | 30.0% |
| !! | TTTGCTTTGGAAATCATTGT+AGG | + | chr1.4:53938564-53938583 | MS.gene029884:intron | 30.0% |
| !!! | CAATGTGTATCCATTTTTTG+CGG | + | chr1.4:53940795-53940814 | MS.gene029884:intron | 30.0% |
| !!! | CCTTTCTTTTTTTTATGCTC+AGG | + | chr1.4:53940906-53940925 | MS.gene029884:intron | 30.0% |
| !!! | TCTATTAGTTTTCCCTTTAC+TGG | + | chr1.4:53940262-53940281 | MS.gene029884:intron | 30.0% |
| !!! | TTTTGCCGATTTGGATAATA+AGG | + | chr1.4:53940660-53940679 | MS.gene029884:intron | 30.0% |
| !!! | TTTTTTTTGGAGCTTTGCTT+TGG | + | chr1.4:53938551-53938570 | MS.gene029884:intron | 30.0% |
| AAAACCAAACTGTCCTCTAA+TGG | + | chr1.4:53939377-53939396 | MS.gene029884:intron | 35.0% | |
| AAAGATCAGCTGTGTGAAAA+TGG | + | chr1.4:53940180-53940199 | MS.gene029884:intron | 35.0% | |
| AAGTGTATGTCACTCACTAT+AGG | + | chr1.4:53940522-53940541 | MS.gene029884:intron | 35.0% | |
| ACTGTATTTCTTGCGTTGTT+GGG | + | chr1.4:53939990-53940009 | MS.gene029884:intron | 35.0% | |
| AGTGTTCTTCATTGTAGTAG+TGG | + | chr1.4:53938754-53938773 | MS.gene029884:intron | 35.0% | |
| ATACCTCCCTAGATATCAAA+TGG | + | chr1.4:53939402-53939421 | MS.gene029884:intron | 35.0% | |
| ATCTAACTTAAACCTTGAGC+TGG | + | chr1.4:53939493-53939512 | MS.gene029884:intron | 35.0% | |
| ATGAACGAGTCGAAATTCAA+AGG | - | chr1.4:53938174-53938193 | None:intergenic | 35.0% | |
| ATGACAAATACGAGCTGATT+AGG | - | chr1.4:53940715-53940734 | None:intergenic | 35.0% | |
| ATGCTCAGGAAATATTGGAA+GGG | + | chr1.4:53940920-53940939 | MS.gene029884:intron | 35.0% | |
| ATGGCTATATGGTAGTTGTT+TGG | + | chr1.4:53939421-53939440 | MS.gene029884:intron | 35.0% | |
| ATTATTGGAGTTTAACCTGC+CGG | + | chr1.4:53941586-53941605 | MS.gene029884:CDS | 35.0% | |
| CGAAGTTTAGAAAACATCAC+GGG | - | chr1.4:53940825-53940844 | None:intergenic | 35.0% | |
| CGACTTTGTAAGGATTACTT+AGG | + | chr1.4:53939189-53939208 | MS.gene029884:intron | 35.0% | |
| CGTTGCTTCTATTGACATTA+AGG | + | chr1.4:53941047-53941066 | MS.gene029884:CDS | 35.0% | |
| CTACTACAATGAAGAACACT+AGG | - | chr1.4:53938754-53938773 | None:intergenic | 35.0% | |
| GAACTGGGATTTATTCTTGA+TGG | + | chr1.4:53940451-53940470 | MS.gene029884:CDS | 35.0% | |
| GCAAGGATGTATTGTTTGTA+AGG | + | chr1.4:53938407-53938426 | MS.gene029884:intron | 35.0% | |
| GTATAGCAACTACTACTTGT+TGG | + | chr1.4:53938697-53938716 | MS.gene029884:intron | 35.0% | |
| TATGCTCAGGAAATATTGGA+AGG | + | chr1.4:53940919-53940938 | MS.gene029884:intron | 35.0% | |
| TCACGTGCGTTTATATAAGT+GGG | + | chr1.4:53939140-53939159 | MS.gene029884:intron | 35.0% | |
| TCTTGATTATAGCACTTCAG+AGG | + | chr1.4:53941340-53941359 | MS.gene029884:intron | 35.0% | |
| TGTGTTCTCTTGATTGATGT+TGG | + | chr1.4:53939752-53939771 | MS.gene029884:intron | 35.0% | |
| TGTTCTTGTCATCTGTTAGT+CGG | + | chr1.4:53939636-53939655 | MS.gene029884:intron | 35.0% | |
| TTTATTAAGGAACGGAAAGC+CGG | - | chr1.4:53939711-53939730 | None:intergenic | 35.0% | |
| ! | AGGTGCCTTATTATCCAAAT+CGG | - | chr1.4:53940668-53940687 | None:intergenic | 35.0% |
| ! | AGGTTTTCAATTTGGTCATG+TGG | + | chr1.4:53939298-53939317 | MS.gene029884:intron | 35.0% |
| ! | GAAGAAGAAGTTTTCAAACC+TGG | - | chr1.4:53938132-53938151 | None:intergenic | 35.0% |
| ! | GGTTTTCAATTTGGTCATGT+GGG | + | chr1.4:53939299-53939318 | MS.gene029884:intron | 35.0% |
| ! | GTGTTTCTGATGCACTAATT+TGG | + | chr1.4:53939522-53939541 | MS.gene029884:intron | 35.0% |
| ! | TAGGAGGAAGGTTTTCAATT+TGG | + | chr1.4:53939290-53939309 | MS.gene029884:intron | 35.0% |
| ! | TTAAGAGCATGTAGCAACTT+CGG | - | chr1.4:53941632-53941651 | None:intergenic | 35.0% |
| ! | TTAAGCTTAGTTCTCGTACA+CGG | + | chr1.4:53938296-53938315 | MS.gene029884:intron | 35.0% |
| ! | TTCTCAAGCAGTACATTTTC+TGG | - | chr1.4:53940982-53941001 | None:intergenic | 35.0% |
| ! | TTGAATTTCGACTCGTTCAT+TGG | + | chr1.4:53938174-53938193 | MS.gene029884:intron | 35.0% |
| ! | TTGATAGCTCATGTATGGTT+AGG | + | chr1.4:53939241-53939260 | MS.gene029884:intron | 35.0% |
| !! | ATCAAAGAGACTTGATGATG+GGG | + | chr1.4:53940417-53940436 | MS.gene029884:CDS | 35.0% |
| !! | GTCGTTTTGTGAGTGATTTT+TGG | + | chr1.4:53938726-53938745 | MS.gene029884:intron | 35.0% |
| !! | TTGACTTGGTTATCAATCTG+AGG | + | chr1.4:53940953-53940972 | MS.gene029884:CDS | 35.0% |
| !!! | TTAGAGGACAGTTTGGTTTT+AGG | - | chr1.4:53939377-53939396 | None:intergenic | 35.0% |
| AAACACTCATTTCCAGCTCA+AGG | - | chr1.4:53939508-53939527 | None:intergenic | 40.0% | |
| AATCGAGACAATTTACCACC+AGG | + | chr1.4:53939038-53939057 | MS.gene029884:intron | 40.0% | |
| ACAAACAATACATCCTTGCG+TGG | - | chr1.4:53938406-53938425 | None:intergenic | 40.0% | |
| ATCAGAAGAACAGTCACGTA+CGG | + | chr1.4:53937972-53937991 | MS.gene029884:CDS | 40.0% | |
| ATGAATATGATACTCCGGCT+TGG | - | chr1.4:53938902-53938921 | None:intergenic | 40.0% | |
| ATGTCCATTAGAGGACAGTT+TGG | - | chr1.4:53939384-53939403 | None:intergenic | 40.0% | |
| ATTGACATTAAGGCCGAGAA+TGG | + | chr1.4:53941057-53941076 | MS.gene029884:CDS | 40.0% | |
| ATTGTCCTTTGCAGAGATAG+TGG | + | chr1.4:53938876-53938895 | MS.gene029884:intron | 40.0% | |
| CAAATACGAGCTGATTAGGT+AGG | - | chr1.4:53940711-53940730 | None:intergenic | 40.0% | |
| CAATTTGTAGGTGGAAGAAG+CGG | - | chr1.4:53941105-53941124 | None:intergenic | 40.0% | |
| CACCAAGGAGATTTGAAAGA+CGG | - | chr1.4:53938045-53938064 | None:intergenic | 40.0% | |
| CTGAAGCAGTTGTCAAAGAA+AGG | + | chr1.4:53941157-53941176 | MS.gene029884:CDS | 40.0% | |
| CTTACTTAACTCCTGAACTC+TGG | + | chr1.4:53938473-53938492 | MS.gene029884:intron | 40.0% | |
| GACTGTATTTCTTGCGTTGT+TGG | + | chr1.4:53939989-53940008 | MS.gene029884:intron | 40.0% | |
| GTCACGTGCGTTTATATAAG+TGG | + | chr1.4:53939139-53939158 | MS.gene029884:intron | 40.0% | |
| TAGCCATTTGATATCTAGGG+AGG | - | chr1.4:53939408-53939427 | None:intergenic | 40.0% | |
| TATAAACGCACGTGACACTT+AGG | - | chr1.4:53939135-53939154 | None:intergenic | 40.0% | |
| TATTTAGTAAGCACTAGCCC+AGG | + | chr1.4:53939878-53939897 | MS.gene029884:intron | 40.0% | |
| TGAAATCCATGTGTTTAGCC+AGG | + | chr1.4:53939267-53939286 | MS.gene029884:intron | 40.0% | |
| TGCTCAGGAAATATTGGAAG+GGG | + | chr1.4:53940921-53940940 | MS.gene029884:intron | 40.0% | |
| TGTTAACCCTCAAGATCCTA+GGG | - | chr1.4:53938515-53938534 | None:intergenic | 40.0% | |
| TTATTGGAGTTTAACCTGCC+GGG | + | chr1.4:53941587-53941606 | MS.gene029884:CDS | 40.0% | |
| TTCTGCTCTCTGATGTGTAA+TGG | + | chr1.4:53940321-53940340 | MS.gene029884:intron | 40.0% | |
| TTGACATTAAGGCCGAGAAT+GGG | + | chr1.4:53941058-53941077 | MS.gene029884:CDS | 40.0% | |
| TTTCAAACCTGGGAAGAAAG+TGG | - | chr1.4:53938121-53938140 | None:intergenic | 40.0% | |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr1.4:53940481-53940500 | None:intergenic | 40.0% |
| ! | CCAATAATTTTCCTCTGCTG+CGG | - | chr1.4:53941574-53941593 | None:intergenic | 40.0% |
| ! | CCTAGAGTATTCAACTTCCT+GGG | - | chr1.4:53939898-53939917 | None:intergenic | 40.0% |
| ! | TAAGCTTAGTTCTCGTACAC+GGG | + | chr1.4:53938297-53938316 | MS.gene029884:intron | 40.0% |
| ! | TCCTAGAGTATTCAACTTCC+TGG | - | chr1.4:53939899-53939918 | None:intergenic | 40.0% |
| ! | TGTCACTTATAGCACTTCAG+AGG | + | chr1.4:53941248-53941267 | MS.gene029884:intron | 40.0% |
| AAAATTCCTGAGGTCTCACC+TGG | + | chr1.4:53940758-53940777 | MS.gene029884:intron | 45.0% | |
| AATTCCAGGGATCCCATTCT+CGG | - | chr1.4:53941073-53941092 | None:intergenic | 45.0% | |
| ACATCAGAGAGCAGAAGAGT+TGG | - | chr1.4:53940317-53940336 | None:intergenic | 45.0% | |
| AGCCGTCTTTCAAATCTCCT+TGG | + | chr1.4:53938040-53938059 | MS.gene029884:CDS | 45.0% | |
| AGGAGGATTTGCAATCAGTG+TGG | + | chr1.4:53941012-53941031 | MS.gene029884:CDS | 45.0% | |
| AGGATTTGCAATCAGTGTGG+GGG | + | chr1.4:53941015-53941034 | MS.gene029884:CDS | 45.0% | |
| ATCCATGTGTTTAGCCAGGT+AGG | + | chr1.4:53939271-53939290 | MS.gene029884:intron | 45.0% | |
| ATTTGAAAGACGGCTAGCGT+AGG | - | chr1.4:53938035-53938054 | None:intergenic | 45.0% | |
| CCCAGGAAGTTGAATACTCT+AGG | + | chr1.4:53939895-53939914 | MS.gene029884:intron | 45.0% | |
| CCGCAGCAGAGGAAAATTAT+TGG | + | chr1.4:53941571-53941590 | MS.gene029884:CDS | 45.0% | |
| GAGGATTTGCAATCAGTGTG+GGG | + | chr1.4:53941014-53941033 | MS.gene029884:CDS | 45.0% | |
| GCTCTCTGATGTGTAATGGT+TGG | + | chr1.4:53940325-53940344 | MS.gene029884:intron | 45.0% | |
| GGAGGATTTGCAATCAGTGT+GGG | + | chr1.4:53941013-53941032 | MS.gene029884:CDS | 45.0% | |
| GGCAAGCCTGTTTAGCTAAT+TGG | + | chr1.4:53939103-53939122 | MS.gene029884:intron | 45.0% | |
| GTACTGCTTGAGAAATGCCT+TGG | + | chr1.4:53940988-53941007 | MS.gene029884:CDS | 45.0% | |
| GTGTTAACCCTCAAGATCCT+AGG | - | chr1.4:53938516-53938535 | None:intergenic | 45.0% | |
| GTTAACCCTCAAGATCCTAG+GGG | - | chr1.4:53938514-53938533 | None:intergenic | 45.0% | |
| TCCTGAACTCTGGACTACTA+GGG | + | chr1.4:53938483-53938502 | MS.gene029884:intron | 45.0% | |
| TTCTTCTGATCTTCACCACG+TGG | - | chr1.4:53937962-53937981 | None:intergenic | 45.0% | |
| TTGAAAACCTTCCTCCTACC+TGG | - | chr1.4:53939288-53939307 | None:intergenic | 45.0% | |
| ! | TAGGGAGGTATGTCCATTAG+AGG | - | chr1.4:53939393-53939412 | None:intergenic | 45.0% |
| !! | AAAGAGACTTGATGATGGGG+AGG | + | chr1.4:53940420-53940439 | MS.gene029884:CDS | 45.0% |
| ACCACTTGAGCTCCATCACT+TGG | - | chr1.4:53938374-53938393 | None:intergenic | 50.0% | |
| AGAAGAACAGTCACGTACGG+TGG | + | chr1.4:53937975-53937994 | MS.gene029884:CDS | 50.0% | |
| AGCAACTTCGGCCAAGATTC+TGG | - | chr1.4:53941620-53941639 | None:intergenic | 50.0% | |
| ATCACGAACGAGATCACCAG+TGG | - | chr1.4:53938080-53938099 | None:intergenic | 50.0% | |
| ATCTGGTCCACTTTCTTCCC+AGG | + | chr1.4:53938111-53938130 | MS.gene029884:CDS | 50.0% | |
| CACGGGACAACCGCAAAAAA+TGG | - | chr1.4:53940808-53940827 | None:intergenic | 50.0% | |
| CATGTGTTTAGCCAGGTAGG+AGG | + | chr1.4:53939274-53939293 | MS.gene029884:intron | 50.0% | |
| CGGCACACGTGTAAAGTGAA+GGG | - | chr1.4:53939171-53939190 | None:intergenic | 50.0% | |
| CGTGATGAGCTCTCTTCATC+TGG | + | chr1.4:53938094-53938113 | MS.gene029884:CDS | 50.0% | |
| CTCCTACCTGGCTAAACACA+TGG | - | chr1.4:53939276-53939295 | None:intergenic | 50.0% | |
| CTCCTGAACTCTGGACTACT+AGG | + | chr1.4:53938482-53938501 | MS.gene029884:intron | 50.0% | |
| CTTGGCCACTATCTCTGCAA+AGG | - | chr1.4:53938884-53938903 | None:intergenic | 50.0% | |
| GAAGAACAGTCACGTACGGT+GGG | + | chr1.4:53937976-53937995 | MS.gene029884:CDS | 50.0% | |
| GATTGCAAATCCTCCTGCCA+AGG | - | chr1.4:53941008-53941027 | None:intergenic | 50.0% | |
| GCAACTTCGGCCAAGATTCT+GGG | - | chr1.4:53941619-53941638 | None:intergenic | 50.0% | |
| TCGGCACACGTGTAAAGTGA+AGG | - | chr1.4:53939172-53939191 | None:intergenic | 50.0% | |
| TGCTTGAGAAATGCCTTGGC+AGG | + | chr1.4:53940992-53941011 | MS.gene029884:CDS | 50.0% | |
| TGGGATCCCTGGAATTGTCA+TGG | + | chr1.4:53941077-53941096 | MS.gene029884:CDS | 50.0% | |
| TGGTTATTGAGCTCCACGCA+AGG | + | chr1.4:53938390-53938409 | MS.gene029884:intron | 50.0% | |
| TGTTTAGCCAGGTAGGAGGA+AGG | + | chr1.4:53939278-53939297 | MS.gene029884:intron | 50.0% | |
| TTGAGAAATGCCTTGGCAGG+AGG | + | chr1.4:53940995-53941014 | MS.gene029884:CDS | 50.0% | |
| ! | AGGGGTAGCTGACATTGACT+TGG | + | chr1.4:53940939-53940958 | MS.gene029884:CDS | 50.0% |
| ! | TCCAAGTGATGGAGCTCAAG+TGG | + | chr1.4:53938370-53938389 | MS.gene029884:intron | 50.0% |
| !! | ACACGTGTGCCGACTTTGTA+AGG | + | chr1.4:53939179-53939198 | MS.gene029884:intron | 50.0% |
| !! | CAAGATTCTGGGATTCCTCC+CGG | - | chr1.4:53941608-53941627 | None:intergenic | 50.0% |
| !! | CTTGATGATGGGGAGGCTAA+AGG | + | chr1.4:53940427-53940446 | MS.gene029884:CDS | 50.0% |
| !! | GAGCAGAAGAGTTGGTGCAA+TGG | - | chr1.4:53940309-53940328 | None:intergenic | 50.0% |
| AACAAGACGGAATGGCGCGT+GGG | - | chr1.4:53937936-53937955 | None:intergenic | 55.0% | |
| ACCCTCAAGATCCTAGGGGA+AGG | - | chr1.4:53938510-53938529 | None:intergenic | 55.0% | |
| AGAACACCAGGTGAGACCTC+AGG | - | chr1.4:53940767-53940786 | None:intergenic | 55.0% | |
| AGATCACCAGTGGCGATGTG+AGG | - | chr1.4:53938070-53938089 | None:intergenic | 55.0% | |
| AGCGGAGCCATGACAATTCC+AGG | - | chr1.4:53941087-53941106 | None:intergenic | 55.0% | |
| ATGATTGCAGAGTCGGCCTG+TGG | + | chr1.4:53941538-53941557 | MS.gene029884:intron | 55.0% | |
| CACCACGTGGAGCAACAAGA+CGG | - | chr1.4:53937949-53937968 | None:intergenic | 55.0% | |
| CCCTCAAGATCCTAGGGGAA+GGG | - | chr1.4:53938509-53938528 | None:intergenic | 55.0% | |
| CCCTTCCCCTAGGATCTTGA+GGG | + | chr1.4:53938506-53938525 | MS.gene029884:intron | 55.0% | |
| CCTTCATCTCTTCCGTCGCA+AGG | + | chr1.4:53937885-53937904 | MS.gene029884:CDS | 55.0% | |
| CCTTGCGACGGAAGAGATGA+AGG | - | chr1.4:53937888-53937907 | None:intergenic | 55.0% | |
| CGGGAGGAATCCCAGAATCT+TGG | + | chr1.4:53941606-53941625 | MS.gene029884:CDS | 55.0% | |
| CGTGGAGCAACAAGACGGAA+TGG | - | chr1.4:53937944-53937963 | None:intergenic | 55.0% | |
| CTGCGGTAAAACTCCTCCAC+AGG | - | chr1.4:53941557-53941576 | None:intergenic | 55.0% | |
| GCCCTAGTAGTCCAGAGTTC+AGG | - | chr1.4:53938487-53938506 | None:intergenic | 55.0% | |
| GCGGAGCCATGACAATTCCA+GGG | - | chr1.4:53941086-53941105 | None:intergenic | 55.0% | |
| GGGGAGGCTAAAGGTGAACT+GGG | + | chr1.4:53940436-53940455 | MS.gene029884:CDS | 55.0% | |
| TCCCCAATGCACGACAGGTT+GGG | + | chr1.4:53939082-53939101 | MS.gene029884:intron | 55.0% | |
| TGCCCAACCTGTCGTGCATT+GGG | - | chr1.4:53939087-53939106 | None:intergenic | 55.0% | |
| TGGCGATGTGAGGAACACCA+AGG | - | chr1.4:53938060-53938079 | None:intergenic | 55.0% | |
| TGGGGAGGCTAAAGGTGAAC+TGG | + | chr1.4:53940435-53940454 | MS.gene029884:CDS | 55.0% | |
| TTGCCCAACCTGTCGTGCAT+TGG | - | chr1.4:53939088-53939107 | None:intergenic | 55.0% | |
| TTGGAGTTTAACCTGCCGGG+AGG | + | chr1.4:53941590-53941609 | MS.gene029884:CDS | 55.0% | |
| ! | GAGGAGTTTTACCGCAGCAG+AGG | + | chr1.4:53941560-53941579 | MS.gene029884:CDS | 55.0% |
| ! | TGCAGAGATAGTGGCCAAGC+CGG | + | chr1.4:53938885-53938904 | MS.gene029884:intron | 55.0% |
| ! | TTCCGTCTTGTTGCTCCACG+TGG | + | chr1.4:53937944-53937963 | MS.gene029884:CDS | 55.0% |
| AAGGCCGAGAATGGGATCCC+TGG | + | chr1.4:53941066-53941085 | MS.gene029884:CDS | 60.0% | |
| ACTACTAGGGCCCTTCCCCT+AGG | + | chr1.4:53938496-53938515 | MS.gene029884:intron | 60.0% | |
| ATTGCAGAGTCGGCCTGTGG+AGG | + | chr1.4:53941541-53941560 | MS.gene029884:intron | 60.0% | |
| CAACAAGACGGAATGGCGCG+TGG | - | chr1.4:53937937-53937956 | None:intergenic | 60.0% | |
| CACGTACGGTGGGTCTTCCT+CGG | + | chr1.4:53937986-53938005 | MS.gene029884:CDS | 60.0% | |
| CAGTGTCCCCAATGCACGAC+AGG | + | chr1.4:53939077-53939096 | MS.gene029884:intron | 60.0% | |
| CTGTCGTGCATTGGGGACAC+TGG | - | chr1.4:53939079-53939098 | None:intergenic | 60.0% | |
| GCCCAACCTGTCGTGCATTG+GGG | - | chr1.4:53939086-53939105 | None:intergenic | 60.0% | |
| GCCCTTCCCCTAGGATCTTG+AGG | + | chr1.4:53938505-53938524 | MS.gene029884:intron | 60.0% | |
| GGGACACTGGCAAGCACAGT+CGG | - | chr1.4:53939066-53939085 | None:intergenic | 60.0% | |
| GGTGTTCCTCACATCGCCAC+TGG | + | chr1.4:53938061-53938080 | MS.gene029884:CDS | 60.0% | |
| GTCCCCAATGCACGACAGGT+TGG | + | chr1.4:53939081-53939100 | MS.gene029884:intron | 60.0% | |
| TAGGTGCCTTTACCGACGCC+AGG | - | chr1.4:53938016-53938035 | None:intergenic | 60.0% | |
| TGGGTCTTCCTCGGTTGTCC+TGG | + | chr1.4:53937995-53938014 | MS.gene029884:CDS | 60.0% | |
| TTCCTCGGTTGTCCTGGCGT+CGG | + | chr1.4:53938001-53938020 | MS.gene029884:CDS | 60.0% | |
| !! | ATTCTGGGATTCCTCCCGGC+AGG | - | chr1.4:53941604-53941623 | None:intergenic | 60.0% |
| !! | GGTTGTCCTGGCGTCGGTAA+AGG | + | chr1.4:53938007-53938026 | MS.gene029884:CDS | 60.0% |
| AGAGATGAAGGACGCGCGCG+TGG | - | chr1.4:53937876-53937895 | None:intergenic | 65.0% | |
| CGTGGAAAGGCGGGTCGTGA+AGG | - | chr1.4:53937858-53937877 | None:intergenic | 65.0% | |
| GGAGAGGTAGCGCCTTGCGA+CGG | - | chr1.4:53937900-53937919 | None:intergenic | 65.0% | |
| GGGAGTTGAGCTCGGAGGAG+AGG | - | chr1.4:53937916-53937935 | None:intergenic | 65.0% | |
| TACCGACGCCAGGACAACCG+AGG | - | chr1.4:53938006-53938025 | None:intergenic | 65.0% | |
| TGAAGGACGCGCGCGTGGAA+AGG | - | chr1.4:53937871-53937890 | None:intergenic | 65.0% | |
| TGGCGCGTGGGAGTTGAGCT+CGG | - | chr1.4:53937924-53937943 | None:intergenic | 65.0% | |
| ! | CAAGCACAGTCGGTGCCTGG+TGG | - | chr1.4:53939056-53939075 | None:intergenic | 65.0% |
| ! | TGGCAAGCACAGTCGGTGCC+TGG | - | chr1.4:53939059-53939078 | None:intergenic | 65.0% |
| AGGACGCGCGCGTGGAAAGG+CGG | - | chr1.4:53937868-53937887 | None:intergenic | 70.0% | |
| CGCGTGGGAGTTGAGCTCGG+AGG | - | chr1.4:53937921-53937940 | None:intergenic | 70.0% | |
| GGACGCGCGCGTGGAAAGGC+GGG | - | chr1.4:53937867-53937886 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53937848 | 53941691 | 53937848 | ID=MS.gene029884 |
| chr1.4 | mRNA | 53937848 | 53941691 | 53937848 | ID=MS.gene029884.t1;Parent=MS.gene029884 |
| chr1.4 | exon | 53937848 | 53938132 | 53937848 | ID=MS.gene029884.t1.exon1;Parent=MS.gene029884.t1 |
| chr1.4 | CDS | 53937848 | 53938132 | 53937848 | ID=cds.MS.gene029884.t1;Parent=MS.gene029884.t1 |
| chr1.4 | exon | 53940358 | 53940498 | 53940358 | ID=MS.gene029884.t1.exon2;Parent=MS.gene029884.t1 |
| chr1.4 | CDS | 53940358 | 53940498 | 53940358 | ID=cds.MS.gene029884.t1;Parent=MS.gene029884.t1 |
| chr1.4 | exon | 53940928 | 53941200 | 53940928 | ID=MS.gene029884.t1.exon3;Parent=MS.gene029884.t1 |
| chr1.4 | CDS | 53940928 | 53941200 | 53940928 | ID=cds.MS.gene029884.t1;Parent=MS.gene029884.t1 |
| chr1.4 | exon | 53941548 | 53941691 | 53941548 | ID=MS.gene029884.t1.exon4;Parent=MS.gene029884.t1 |
| chr1.4 | CDS | 53941548 | 53941691 | 53941548 | ID=cds.MS.gene029884.t1;Parent=MS.gene029884.t1 |
| Gene Sequence |
| Protein sequence |
