AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030640.t1 MTR_8g092890 96.718 579 19 0 1 579 67 645 0.0 1153
MS.gene030640.t1 MTR_3g095780 62.075 530 160 8 78 579 112 628 0.0 586
MS.gene030640.t1 MTR_3g491920 42.226 521 241 11 107 577 190 700 1.62e-125 385
MS.gene030640.t1 MTR_1g007740 39.630 540 229 12 107 576 194 706 3.46e-125 387
MS.gene030640.t1 MTR_8g100005 39.511 491 239 7 134 579 237 714 3.16e-112 351
MS.gene030640.t1 MTR_2g079740 35.962 520 244 8 138 579 350 858 6.72e-92 301
MS.gene030640.t1 MTR_7g060420 39.481 385 182 3 130 463 383 767 8.98e-80 271
MS.gene030640.t1 MTR_8g100005 45.200 250 93 2 135 340 238 487 7.05e-67 226
MS.gene030640.t1 MTR_4g119620 27.273 286 179 9 156 433 19 283 7.45e-26 108
MS.gene030640.t1 MTR_1g072140 24.911 281 171 10 158 429 21 270 1.64e-18 87.0
MS.gene030640.t1 MTR_3g106080 26.554 177 107 6 161 334 458 614 1.72e-13 73.9
MS.gene030640.t1 MTR_8g037340 22.000 250 176 6 210 441 208 456 4.20e-11 65.9
MS.gene030640.t1 MTR_1g091053 49.333 75 25 2 58 119 3 77 9.74e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030640.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.27e-121 372
MS.gene030640.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.27e-121 372
MS.gene030640.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.27e-121 372
MS.gene030640.t1 AT5G24320 38.418 531 244 11 104 577 188 692 2.22e-113 353
MS.gene030640.t1 AT5G53500 40.344 523 231 14 107 577 159 652 3.84e-112 349
MS.gene030640.t1 AT5G53500 40.344 523 231 14 107 577 159 652 3.84e-112 349
MS.gene030640.t1 AT5G24320 38.131 535 244 12 104 577 188 696 1.89e-111 348
MS.gene030640.t1 AT5G42010 38.043 552 236 16 101 579 191 709 4.18e-104 330
MS.gene030640.t1 AT1G64610 37.761 527 238 12 104 579 160 647 1.11e-100 319
MS.gene030640.t1 AT1G64610 37.761 527 238 12 104 579 160 647 1.11e-100 319
MS.gene030640.t1 AT3G15470 37.475 507 242 9 138 579 387 883 1.15e-97 317
MS.gene030640.t1 AT5G54200 37.549 514 252 11 128 579 319 825 3.43e-94 306
MS.gene030640.t1 AT5G42010 41.127 355 160 4 104 409 194 548 1.23e-81 267
MS.gene030640.t1 AT5G02430 34.951 515 259 8 139 579 386 898 2.33e-79 268
MS.gene030640.t1 AT2G37670 39.071 366 178 4 139 462 379 741 3.89e-75 256
MS.gene030640.t1 AT2G37670 39.071 366 178 4 139 462 380 742 4.31e-75 256
MS.gene030640.t1 AT3G49660 25.086 291 185 9 151 433 11 276 1.36e-22 99.4
MS.gene030640.t1 AT4G02730 26.814 317 188 12 123 429 5 287 4.19e-20 92.4
MS.gene030640.t1 AT2G43770 24.731 279 173 9 160 428 49 300 4.35e-16 80.5
MS.gene030640.t1 AT5G25150 27.684 177 105 6 161 334 457 613 1.06e-12 71.2
MS.gene030640.t1 AT5G25150 27.684 177 105 6 161 334 457 613 1.21e-12 71.2
MS.gene030640.t1 AT2G16405 28.105 153 91 2 179 330 188 322 1.40e-12 70.5

Find 119 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATCCAATATGCAGATTT+TGG 0.140444 4.3:+8452863 None:intergenic
ATCAAGACATTCCACAATTT+TGG 0.147050 4.3:-8452091 MS.gene030640:CDS
GTGAGGCAAAAGAAGAATTT+TGG 0.149020 4.3:-8454318 MS.gene030640:CDS
TCACCTTCTGGTAAAGTATC+TGG 0.167154 4.3:-8454460 MS.gene030640:CDS
AGGACTCGCGCGTGTATATT+TGG 0.192771 4.3:-8452531 MS.gene030640:CDS
CAGTCCCAATGGTCAGTATT+TGG 0.195556 4.3:-8454074 MS.gene030640:CDS
TTTGTAGTTGGTTCTCTTAC+AGG 0.204905 4.3:-8453249 MS.gene030640:CDS
TTGATGGTAAAGTTCGAATA+TGG 0.250806 4.3:-8453475 MS.gene030640:CDS
TGGCTTGCCTGTTAGGCTTT+AGG 0.253307 4.3:-8452071 None:intergenic
CAACAAGATTACTGGCATTC+AGG 0.268264 4.3:-8453048 MS.gene030640:intron
TCTTGTTGGAAGATCTTAAA+AGG 0.284736 4.3:-8454393 MS.gene030640:CDS
TTCCAGTGATATCTTGGATT+TGG 0.289851 4.3:-8453918 MS.gene030640:CDS
TAATTCTCTGACAGTTGTTT+TGG 0.290037 4.3:+8452904 None:intergenic
GGTAATTGGTTCTTCATTGA+TGG 0.304868 4.3:-8452292 MS.gene030640:CDS
CATGGAAAGAAGAAAGTATT+AGG 0.323775 4.3:-8453071 MS.gene030640:CDS
AATGCAAGCATTTCACCTTC+TGG 0.331414 4.3:-8454472 MS.gene030640:CDS
TCGATAATGGTAAAGCTAAT+AGG 0.334017 4.3:-8454291 MS.gene030640:CDS
TTATTGACTGGGCAGATATA+CGG 0.336332 4.3:-8453433 MS.gene030640:CDS
GATGACTGGTCGGTCACATT+GGG 0.337398 4.3:-8454532 MS.gene030640:CDS
GAGCTCACAAAGGACTAATA+TGG 0.353947 4.3:-8454108 MS.gene030640:CDS
TATTCGAACTTTACCATCAA+TGG 0.358267 4.3:+8453478 None:intergenic
ATTTAGCTTACACTTCTTCC+AGG 0.372892 4.3:-8454585 MS.gene030640:CDS
TTTATCAGTGGATCCATTGA+TGG 0.375545 4.3:-8453491 MS.gene030640:CDS
TTCTGAAGCTGAAGTCTTGT+TGG 0.380038 4.3:-8454407 MS.gene030640:CDS
AGATTCCAAAATCTGCATAT+TGG 0.388192 4.3:-8452868 MS.gene030640:CDS
TGGTCATTCCAGTGATATCT+TGG 0.395337 4.3:-8453924 MS.gene030640:CDS
GCATTGTCCTAAAGCCTAAC+AGG 0.399732 4.3:+8452064 None:intergenic
TCGCCCCTTCAAGAATTGTT+TGG 0.407602 4.3:-8453944 MS.gene030640:CDS
TCTGGGAAGTTGGTTCTCTC+TGG 0.410316 4.3:-8454442 MS.gene030640:CDS
GTATTAGGCAACAAGATTAC+TGG 0.414967 4.3:-8453056 MS.gene030640:CDS
CCCACTTGATGTAAATGAAC+CGG 0.420329 4.3:+8452576 None:intergenic
TGGATAAAACTGTTCGCGCT+TGG 0.427183 4.3:-8453757 MS.gene030640:CDS
CATGTGCAGGGATTTGTAGT+TGG 0.427358 4.3:-8453261 MS.gene030640:intron
TGCAACAGTTACGCCCTTGA+AGG 0.436499 4.3:+8452441 None:intergenic
GATTCTTCTTTCGTCTTCGA+TGG 0.446992 4.3:-8453777 MS.gene030640:CDS
CTAATACTTTCTTCTTTCCA+TGG 0.456358 4.3:+8453072 None:intergenic
CACCTTCTGGTAAAGTATCT+GGG 0.458891 4.3:-8454459 MS.gene030640:CDS
TCCGGTTCATTTACATCAAG+TGG 0.463250 4.3:-8452577 MS.gene030640:CDS
TGATGGTAAAGTTCGAATAT+GGG 0.463939 4.3:-8453474 MS.gene030640:CDS
AATGACCAAACAATTCTTGA+AGG 0.465578 4.3:+8453939 None:intergenic
GTGATATCTTGGATTTGGCC+TGG 0.468041 4.3:-8453913 MS.gene030640:CDS
AAGATGGCGTTGTGCGCATA+TGG 0.468274 4.3:-8454039 MS.gene030640:CDS
TGATGACTGGTCGGTCACAT+TGG 0.471379 4.3:-8454533 MS.gene030640:CDS
CTCAGAAGTAACCTCTAGCT+TGG 0.473947 4.3:+8452342 None:intergenic
CATGTTGGAAGTTTCTCCTC+AGG 0.483782 4.3:+8452238 None:intergenic
CTATCAGGCCTTCCATGGTC+AGG 0.488291 4.3:-8452610 MS.gene030640:intron
GGGAAACATATCATTTCAGT+TGG 0.490890 4.3:-8452556 MS.gene030640:CDS
TATTTATCTGCGCCTCAAGC+TGG 0.494606 4.3:+8453096 None:intergenic
TTTCTGATATATTCCTTCCA+TGG 0.495796 4.3:+8452155 None:intergenic
TCGTTCTATCAGGCCTTCCA+TGG 0.502364 4.3:-8452615 MS.gene030640:intron
TTCATTGATGGTACATGTCG+AGG 0.508863 4.3:-8452280 MS.gene030640:CDS
CTAGCCAAATACTGACCATT+GGG 0.509035 4.3:+8454070 None:intergenic
AACTTCAATGACTTCAAAAG+TGG 0.509136 4.3:-8452508 MS.gene030640:CDS
TATTGACTGGGCAGATATAC+GGG 0.510784 4.3:-8453432 MS.gene030640:CDS
TTGGCTAGTGGAGGTGAAGA+TGG 0.511823 4.3:-8454055 MS.gene030640:CDS
GCTATAAGTTATCAACAAGA+TGG 0.514520 4.3:-8453398 MS.gene030640:CDS
GGAAGTTGGTTCTCTCTGGA+TGG 0.518254 4.3:-8454438 MS.gene030640:CDS
ATAGTAGCAGCTGGCAGTGA+TGG 0.524175 4.3:-8452118 MS.gene030640:CDS
TGGTAAAGTATCTGGGAAGT+TGG 0.533172 4.3:-8454452 MS.gene030640:CDS
ACTAGCCAAATACTGACCAT+TGG 0.537399 4.3:+8454069 None:intergenic
GTGAAGAACGAGTTATTGAC+TGG 0.539351 4.3:-8453445 MS.gene030640:CDS
ATCATTTGGAAGGGAAACAA+AGG 0.543245 4.3:+8453985 None:intergenic
TTTCTCTTGTGAACAAACCC+TGG 0.543560 4.3:+8454567 None:intergenic
AGGAAAATATTTCCAGCTTG+AGG 0.544685 4.3:-8453108 MS.gene030640:CDS
GAGAGGATCGTGGCAAGCAG+TGG 0.545339 4.3:-8454505 MS.gene030640:CDS
TTTAGCTTACACTTCTTCCA+GGG 0.546525 4.3:-8454584 MS.gene030640:CDS
TGGTCAGGAAGTCAGATGTC+CGG 0.560460 4.3:-8452595 MS.gene030640:CDS
AATGAAAATTACTTTATCAG+TGG 0.560882 4.3:-8453503 MS.gene030640:CDS
GGCCAAATCCAAGATATCAC+TGG 0.565834 4.3:+8453916 None:intergenic
CTGAGGAGAAACTTCCAACA+TGG 0.568255 4.3:-8452237 MS.gene030640:CDS
CAAGAGCACAGACAGAGAGA+AGG 0.571987 4.3:-8454340 MS.gene030640:CDS
ATGACCAAACAATTCTTGAA+GGG 0.572203 4.3:+8453940 None:intergenic
AAGGAATATATCAGAAACAT+GGG 0.572905 4.3:-8452149 MS.gene030640:CDS
CAAGCTAGAGGTTACTTCTG+AGG 0.574127 4.3:-8452341 MS.gene030640:CDS
TCTGACTTCCTGACCATGGA+AGG 0.577834 4.3:+8452602 None:intergenic
AATGGTCAGTATTTGGCTAG+TGG 0.581244 4.3:-8454067 MS.gene030640:CDS
GCACAGACAGAGAGAAGGTG+AGG 0.583206 4.3:-8454335 MS.gene030640:CDS
AACATCAGGAAAGGCGACAA+AGG 0.583659 4.3:-8454244 MS.gene030640:CDS
TCATTTGGAAGGGAAACAAA+GGG 0.585294 4.3:+8453986 None:intergenic
TACTTACCAAAGCCTTTGTG+AGG 0.587036 4.3:+8453701 None:intergenic
GAAGGAATATATCAGAAACA+TGG 0.587961 4.3:-8452150 MS.gene030640:CDS
ACATATCATTTCAGTTGGAG+AGG 0.592725 4.3:-8452551 MS.gene030640:CDS
TTCCCAGATACTTTACCAGA+AGG 0.594322 4.3:+8454457 None:intergenic
ACAAGAGGTAAATCCCATGT+TGG 0.595289 4.3:+8452223 None:intergenic
CGGTCACATTGGGGTCGGAG+AGG 0.600622 4.3:-8454522 MS.gene030640:CDS
TGTCACGAAGATAGTAGCCA+TGG 0.604270 4.3:-8452172 MS.gene030640:CDS
ATGACTGGTCGGTCACATTG+GGG 0.606700 4.3:-8454531 MS.gene030640:CDS
CTGGTCGGTCACATTGGGGT+CGG 0.607068 4.3:-8454527 MS.gene030640:CDS
GCGTAACTGTTGCAATACCT+TGG 0.607882 4.3:-8452432 MS.gene030640:CDS
AAGGCGGCGTGAGTATGAAG+TGG 0.612912 4.3:-8454374 MS.gene030640:CDS
GAAGGGAAACAAAGGGAGGG+CGG 0.612940 4.3:+8453993 None:intergenic
GAGTTCAGTGAGGTATACAT+TGG 0.614698 4.3:-8454142 MS.gene030640:CDS
TCACATTCATCTTCTACAAG+AGG 0.615378 4.3:+8452208 None:intergenic
GGTCTAACGATAGTAGCAGC+TGG 0.616322 4.3:-8452127 MS.gene030640:CDS
TGACCAAACAATTCTTGAAG+GGG 0.622366 4.3:+8453941 None:intergenic
CCGGTTCATTTACATCAAGT+GGG 0.623114 4.3:-8452576 MS.gene030640:CDS
TACTTCTATGACATGGCCTG+AGG 0.623220 4.3:-8452254 MS.gene030640:CDS
TAACAGGCAAGCCAAAATTG+TGG 0.625636 4.3:+8452080 None:intergenic
ACTTACCAAAGCCTTTGTGA+GGG 0.626300 4.3:+8453702 None:intergenic
GACATCTGACTTCCTGACCA+TGG 0.626991 4.3:+8452598 None:intergenic
ACGAAGATAGTAGCCATGGA+AGG 0.628021 4.3:-8452168 MS.gene030640:CDS
GATGGTAAAGTTCGAATATG+GGG 0.630516 4.3:-8453473 MS.gene030640:CDS
ACTATGAAATTCAGTCCCAA+TGG 0.634522 4.3:-8454085 MS.gene030640:CDS
GAGGCGCAGATAAATATCCA+TGG 0.635034 4.3:-8453089 MS.gene030640:CDS
GAATAAAACTCGTAGAGTGA+AGG 0.636114 4.3:-8454191 MS.gene030640:CDS
GAGATTGTTCAGAAATACAA+AGG 0.642821 4.3:-8452837 MS.gene030640:intron
ATTGGGGTCGGAGAGGATCG+TGG 0.644123 4.3:-8454515 MS.gene030640:CDS
TGAGGAGAAACTTCCAACAT+GGG 0.648751 4.3:-8452236 MS.gene030640:CDS
GAGGTGGATGGAGTTCAGTG+AGG 0.649416 4.3:-8454152 MS.gene030640:CDS
GGTCAGTATTTGGCTAGTGG+AGG 0.649574 4.3:-8454064 MS.gene030640:CDS
TTTGGAAGGGAAACAAAGGG+AGG 0.662777 4.3:+8453989 None:intergenic
TTGGAAGGGAAACAAAGGGA+GGG 0.669461 4.3:+8453990 None:intergenic
GAGGTTCTACTTCTATGACA+TGG 0.678336 4.3:-8452261 MS.gene030640:CDS
ACTCACATCTGAATTAGACC+AGG 0.684342 4.3:+8453895 None:intergenic
TGTTGGAAGATCTTAAAAGG+CGG 0.697921 4.3:-8454390 MS.gene030640:CDS
CAAGAAATTAGAGCTCACAA+AGG 0.699622 4.3:-8454118 MS.gene030640:CDS
TGAAGAACGAGTTATTGACT+GGG 0.701967 4.3:-8453444 MS.gene030640:CDS
ACTGTTGCAATACCTTGGTG+TGG 0.716842 4.3:-8452427 MS.gene030640:CDS
AGGAATATATCAGAAACATG+GGG 0.726541 4.3:-8452148 MS.gene030640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTTGAAAAATATCATT+TGG + chr4.3:8452693-8452712 None:intergenic 15.0%
!!! AAATGATATTTTTCAAATTG+AGG - chr4.3:8452692-8452711 MS.gene030640:intron 15.0%
!!! TTTAGAAACTATTTTATCTT+CGG + chr4.3:8453514-8453533 None:intergenic 15.0%
!! AACAATTGAAGTACAAAATA+AGG + chr4.3:8453704-8453723 None:intergenic 20.0%
!! AATGAAAATTACTTTATCAG+TGG - chr4.3:8453158-8453177 MS.gene030640:intron 20.0%
!! TTCTTCGAAAAAAATGAAAT+CGG - chr4.3:8454176-8454195 MS.gene030640:CDS 20.0%
!! TTGAAAAATATCATTTGGAA+GGG + chr4.3:8452688-8452707 None:intergenic 20.0%
!! TTTGAAAAATATCATTTGGA+AGG + chr4.3:8452689-8452708 None:intergenic 20.0%
!!! AAGCATTTTAATTTGTATTC+CGG - chr4.3:8453663-8453682 MS.gene030640:intron 20.0%
!!! ATAAAGTAATTTTCATTGAC+AGG + chr4.3:8453155-8453174 None:intergenic 20.0%
!!! ATCAGATTTCTAATGATTTT+AGG - chr4.3:8453533-8453552 MS.gene030640:intron 20.0%
!!! TAAAGTAATTTTCATTGACA+GGG + chr4.3:8453154-8453173 None:intergenic 20.0%
! AAGGAATATATCAGAAACAT+GGG - chr4.3:8454512-8454531 MS.gene030640:CDS 25.0%
! AATGTTATGAACAAAGCATA+TGG + chr4.3:8453052-8453071 None:intergenic 25.0%
! CAAAAAATCGTGAAAATCAT+TGG + chr4.3:8453314-8453333 None:intergenic 25.0%
! CTAAACAAGGTTTAAATTTG+TGG + chr4.3:8453880-8453899 None:intergenic 25.0%
! TAATAGATTCATCAATCTCA+TGG + chr4.3:8453373-8453392 None:intergenic 25.0%
! TATAAAACAGATTGCAACAT+TGG + chr4.3:8452805-8452824 None:intergenic 25.0%
!! TATTACATTTTACATGTGCA+GGG - chr4.3:8453388-8453407 MS.gene030640:intron 25.0%
!!! AAGGTTTTTTTCTTTCTTTC+CGG + chr4.3:8453685-8453704 None:intergenic 25.0%
!!! ATGTTTCTATTGATAGTGTT+TGG - chr4.3:8453991-8454010 MS.gene030640:CDS 25.0%
AACATAGTTGTGGAAAATAC+AGG + chr4.3:8453008-8453027 None:intergenic 30.0%
AACTTCAATGACTTCAAAAG+TGG - chr4.3:8454153-8454172 MS.gene030640:CDS 30.0%
AATGACCAAACAATTCTTGA+AGG + chr4.3:8452725-8452744 None:intergenic 30.0%
ACTGTATCCAATTATAGAAG+AGG + chr4.3:8453113-8453132 None:intergenic 30.0%
ACTTTGACAAAGAAATCTTG+CGG - chr4.3:8453347-8453366 MS.gene030640:intron 30.0%
AGATTCCAAAATCTGCATAT+TGG - chr4.3:8453793-8453812 MS.gene030640:intron 30.0%
AGGAATATATCAGAAACATG+GGG - chr4.3:8454513-8454532 MS.gene030640:CDS 30.0%
AGGTAAAGCAGAATAAAAAG+AGG - chr4.3:8452490-8452509 MS.gene030640:CDS 30.0%
ATGACCAAACAATTCTTGAA+GGG + chr4.3:8452724-8452743 None:intergenic 30.0%
ATGTTTAATGTCTAAGAGCA+TGG + chr4.3:8453076-8453095 None:intergenic 30.0%
CTAATACTTTCTTCTTTCCA+TGG + chr4.3:8453592-8453611 None:intergenic 30.0%
CTGTATCCAATTATAGAAGA+GGG + chr4.3:8453112-8453131 None:intergenic 30.0%
GAAGGAATATATCAGAAACA+TGG - chr4.3:8454511-8454530 MS.gene030640:CDS 30.0%
GAGATTGTTCAGAAATACAA+AGG - chr4.3:8453824-8453843 MS.gene030640:intron 30.0%
GCTATAAGTTATCAACAAGA+TGG - chr4.3:8453263-8453282 MS.gene030640:intron 30.0%
GTAAAGCTAATAGGAAAAAC+TGG - chr4.3:8452379-8452398 MS.gene030640:CDS 30.0%
TAAAGCAGAATAAAAAGAGG+TGG - chr4.3:8452493-8452512 MS.gene030640:CDS 30.0%
TAACGAACTAAACATAGTTG+TGG + chr4.3:8453018-8453037 None:intergenic 30.0%
TACCTGAAGCAACATAAAAA+CGG + chr4.3:8453444-8453463 None:intergenic 30.0%
TATTCGAACTTTACCATCAA+TGG + chr4.3:8453186-8453205 None:intergenic 30.0%
TCTTGTTGGAAGATCTTAAA+AGG - chr4.3:8452268-8452287 MS.gene030640:CDS 30.0%
TGATGGTAAAGTTCGAATAT+GGG - chr4.3:8453187-8453206 MS.gene030640:intron 30.0%
TTTCTGATATATTCCTTCCA+TGG + chr4.3:8454509-8454528 None:intergenic 30.0%
! ATCAAGACATTCCACAATTT+TGG - chr4.3:8454570-8454589 MS.gene030640:CDS 30.0%
! CCTTGTTTAGAACTTTGTTT+AGG - chr4.3:8453890-8453909 MS.gene030640:intron 30.0%
! CTATTACATTTTACATGTGC+AGG - chr4.3:8453387-8453406 MS.gene030640:intron 30.0%
! TAACTTTTCTCACTATTCTC+TGG - chr4.3:8454287-8454306 MS.gene030640:CDS 30.0%
! TAATTCTCTGACAGTTGTTT+TGG + chr4.3:8453760-8453779 None:intergenic 30.0%
! TACAAAGGTACAACACTTAA+TGG - chr4.3:8453839-8453858 MS.gene030640:intron 30.0%
! TCGATAATGGTAAAGCTAAT+AGG - chr4.3:8452370-8452389 MS.gene030640:CDS 30.0%
! TGAGGCAAAAGAAGAATTTT+GGG - chr4.3:8452344-8452363 MS.gene030640:CDS 30.0%
! TTGATGGTAAAGTTCGAATA+TGG - chr4.3:8453186-8453205 MS.gene030640:intron 30.0%
!! AACGATTTTCTCTTGGTAAT+TGG - chr4.3:8454355-8454374 MS.gene030640:CDS 30.0%
!! CATGGAAAGAAGAAAGTATT+AGG - chr4.3:8453590-8453609 MS.gene030640:intron 30.0%
!! CCTAAACAAAGTTCTAAACA+AGG + chr4.3:8453893-8453912 None:intergenic 30.0%
!!! GAATTTTGGGATTTCGATAA+TGG - chr4.3:8452357-8452376 MS.gene030640:CDS 30.0%
ACATATCATTTCAGTTGGAG+AGG - chr4.3:8454110-8454129 MS.gene030640:CDS 35.0%
ACTATGAAATTCAGTCCCAA+TGG - chr4.3:8452576-8452595 MS.gene030640:CDS 35.0%
ACTTAATGGTTGTCACAATC+TGG - chr4.3:8453853-8453872 MS.gene030640:intron 35.0%
AGGAAAATATTTCCAGCTTG+AGG - chr4.3:8453553-8453572 MS.gene030640:intron 35.0%
ATCATTTGGAAGGGAAACAA+AGG + chr4.3:8452679-8452698 None:intergenic 35.0%
ATTGTGCCCTCTTCTATAAT+TGG - chr4.3:8453103-8453122 MS.gene030640:CDS 35.0%
CAAGAAATTAGAGCTCACAA+AGG - chr4.3:8452543-8452562 MS.gene030640:CDS 35.0%
GAATAAAACTCGTAGAGTGA+AGG - chr4.3:8452470-8452489 MS.gene030640:CDS 35.0%
GATGGTAAAGTTCGAATATG+GGG - chr4.3:8453188-8453207 MS.gene030640:intron 35.0%
GGGAAACATATCATTTCAGT+TGG - chr4.3:8454105-8454124 MS.gene030640:CDS 35.0%
GTATTAGGCAACAAGATTAC+TGG - chr4.3:8453605-8453624 MS.gene030640:intron 35.0%
TCACATTCATCTTCTACAAG+AGG + chr4.3:8454456-8454475 None:intergenic 35.0%
TCATTTGGAAGGGAAACAAA+GGG + chr4.3:8452678-8452697 None:intergenic 35.0%
TGACCAAACAATTCTTGAAG+GGG + chr4.3:8452723-8452742 None:intergenic 35.0%
TGTTGGAAGATCTTAAAAGG+CGG - chr4.3:8452271-8452290 MS.gene030640:CDS 35.0%
TTCCAGTGATATCTTGGATT+TGG - chr4.3:8452743-8452762 MS.gene030640:intron 35.0%
TTTATCAGTGGATCCATTGA+TGG - chr4.3:8453170-8453189 MS.gene030640:intron 35.0%
! ATTTAGCTTACACTTCTTCC+AGG - chr4.3:8452076-8452095 MS.gene030640:CDS 35.0%
! GATACAGAACGATTTTCTCT+TGG - chr4.3:8454348-8454367 MS.gene030640:CDS 35.0%
! GGTAATTGGTTCTTCATTGA+TGG - chr4.3:8454369-8454388 MS.gene030640:CDS 35.0%
! GTGAGGCAAAAGAAGAATTT+TGG - chr4.3:8452343-8452362 MS.gene030640:CDS 35.0%
! TCGATCCAATATGCAGATTT+TGG + chr4.3:8453801-8453820 None:intergenic 35.0%
! TGAAGAACGAGTTATTGACT+GGG - chr4.3:8453217-8453236 MS.gene030640:intron 35.0%
! TGTGAGTACTTTTCCTTCAA+GGG - chr4.3:8454207-8454226 MS.gene030640:CDS 35.0%
! TTATTGACTGGGCAGATATA+CGG - chr4.3:8453228-8453247 MS.gene030640:CDS 35.0%
! TTGTGAGTACTTTTCCTTCA+AGG - chr4.3:8454206-8454225 MS.gene030640:CDS 35.0%
! TTTAGCTTACACTTCTTCCA+GGG - chr4.3:8452077-8452096 MS.gene030640:CDS 35.0%
! TTTGTAGTTGGTTCTCTTAC+AGG - chr4.3:8453412-8453431 MS.gene030640:CDS 35.0%
!! AAACAACGAGTTTTGATGAC+TGG - chr4.3:8452115-8452134 MS.gene030640:CDS 35.0%
AATGCAAGCATTTCACCTTC+TGG - chr4.3:8452189-8452208 MS.gene030640:CDS 40.0%
AATGGTCAGTATTTGGCTAG+TGG - chr4.3:8452594-8452613 MS.gene030640:CDS 40.0%
ACAAGAGGTAAATCCCATGT+TGG + chr4.3:8454441-8454460 None:intergenic 40.0%
ACTAGCCAAATACTGACCAT+TGG + chr4.3:8452595-8452614 None:intergenic 40.0%
ACTCACATCTGAATTAGACC+AGG + chr4.3:8452769-8452788 None:intergenic 40.0%
ACTTACCAAAGCCTTTGTGA+GGG + chr4.3:8452962-8452981 None:intergenic 40.0%
CAACAAGATTACTGGCATTC+AGG - chr4.3:8453613-8453632 MS.gene030640:intron 40.0%
CCCACTTGATGTAAATGAAC+CGG + chr4.3:8454088-8454107 None:intergenic 40.0%
CCGGTTCATTTACATCAAGT+GGG - chr4.3:8454085-8454104 MS.gene030640:CDS 40.0%
CTAGCCAAATACTGACCATT+GGG + chr4.3:8452594-8452613 None:intergenic 40.0%
CTCATGAATGTAGCACCAAT+TGG + chr4.3:8453482-8453501 None:intergenic 40.0%
GAGCTCACAAAGGACTAATA+TGG - chr4.3:8452553-8452572 MS.gene030640:CDS 40.0%
GAGGTTCTACTTCTATGACA+TGG - chr4.3:8454400-8454419 MS.gene030640:CDS 40.0%
GAGTTCAGTGAGGTATACAT+TGG - chr4.3:8452519-8452538 MS.gene030640:CDS 40.0%
GATTCTTCTTTCGTCTTCGA+TGG - chr4.3:8452884-8452903 MS.gene030640:CDS 40.0%
GCAGAATAAAAAGAGGTGGA+TGG - chr4.3:8452497-8452516 MS.gene030640:CDS 40.0%
GTGAAGAACGAGTTATTGAC+TGG - chr4.3:8453216-8453235 MS.gene030640:intron 40.0%
TAACAGGCAAGCCAAAATTG+TGG + chr4.3:8454584-8454603 None:intergenic 40.0%
TACTTACCAAAGCCTTTGTG+AGG + chr4.3:8452963-8452982 None:intergenic 40.0%
TCCGGTTCATTTACATCAAG+TGG - chr4.3:8454084-8454103 MS.gene030640:CDS 40.0%
TGAGGAGAAACTTCCAACAT+GGG - chr4.3:8454425-8454444 MS.gene030640:CDS 40.0%
TGGAAGAACTGCAAACAACA+TGG + chr4.3:8453740-8453759 None:intergenic 40.0%
TGGTCATTCCAGTGATATCT+TGG - chr4.3:8452737-8452756 MS.gene030640:intron 40.0%
TGTACATGTGGATCACCAAT+TGG - chr4.3:8453464-8453483 MS.gene030640:CDS 40.0%
TTCCCAGATACTTTACCAGA+AGG + chr4.3:8452207-8452226 None:intergenic 40.0%
TTGCTTCAGGTATGTACATG+TGG - chr4.3:8453452-8453471 MS.gene030640:CDS 40.0%
TTTCTCTTGTGAACAAACCC+TGG + chr4.3:8452097-8452116 None:intergenic 40.0%
! CACCTTCTGGTAAAGTATCT+GGG - chr4.3:8452202-8452221 MS.gene030640:CDS 40.0%
! CGTTTTGTGAACATCAGGAA+AGG - chr4.3:8452408-8452427 MS.gene030640:CDS 40.0%
! CTAAGTGTTTTCCCTCACAA+AGG - chr4.3:8452948-8452967 MS.gene030640:intron 40.0%
! GTCAGTTTTCTCGTTCTATC+AGG - chr4.3:8454036-8454055 MS.gene030640:CDS 40.0%
! TATTGACTGGGCAGATATAC+GGG - chr4.3:8453229-8453248 MS.gene030640:CDS 40.0%
! TCACCTTCTGGTAAAGTATC+TGG - chr4.3:8452201-8452220 MS.gene030640:CDS 40.0%
! TGGTAAAGTATCTGGGAAGT+TGG - chr4.3:8452209-8452228 MS.gene030640:CDS 40.0%
! TTCATTGATGGTACATGTCG+AGG - chr4.3:8454381-8454400 MS.gene030640:CDS 40.0%
!! AACGAGTTTTGATGACTGGT+CGG - chr4.3:8452119-8452138 MS.gene030640:CDS 40.0%
!! TGAAGCGTTTTGTGAACATC+AGG - chr4.3:8452403-8452422 MS.gene030640:CDS 40.0%
!! TTCTGAAGCTGAAGTCTTGT+TGG - chr4.3:8452254-8452273 MS.gene030640:CDS 40.0%
!!! ACAATTTTGGCTTGCCTGTT+AGG - chr4.3:8454583-8454602 MS.gene030640:CDS 40.0%
!!! TGCCGTTTTTATGTTGCTTC+AGG - chr4.3:8453439-8453458 MS.gene030640:CDS 40.0%
AACATCAGGAAAGGCGACAA+AGG - chr4.3:8452417-8452436 MS.gene030640:CDS 45.0%
ACGAAGATAGTAGCCATGGA+AGG - chr4.3:8454493-8454512 MS.gene030640:CDS 45.0%
ACTGTTGCAATACCTTGGTG+TGG - chr4.3:8454234-8454253 MS.gene030640:CDS 45.0%
CAAGCTAGAGGTTACTTCTG+AGG - chr4.3:8454320-8454339 MS.gene030640:CDS 45.0%
CAGTCCCAATGGTCAGTATT+TGG - chr4.3:8452587-8452606 MS.gene030640:CDS 45.0%
CATGTGCAGGGATTTGTAGT+TGG - chr4.3:8453400-8453419 MS.gene030640:CDS 45.0%
CATGTTGGAAGTTTCTCCTC+AGG + chr4.3:8454426-8454445 None:intergenic 45.0%
CTCAGAAGTAACCTCTAGCT+TGG + chr4.3:8454322-8454341 None:intergenic 45.0%
CTGAGGAGAAACTTCCAACA+TGG - chr4.3:8454424-8454443 MS.gene030640:CDS 45.0%
GAGGCGCAGATAAATATCCA+TGG - chr4.3:8453572-8453591 MS.gene030640:intron 45.0%
GCGTAACTGTTGCAATACCT+TGG - chr4.3:8454229-8454248 MS.gene030640:CDS 45.0%
GGAAGCAAAAACCAAGCTAG+AGG - chr4.3:8454308-8454327 MS.gene030640:CDS 45.0%
GGCCAAATCCAAGATATCAC+TGG + chr4.3:8452748-8452767 None:intergenic 45.0%
GTGATATCTTGGATTTGGCC+TGG - chr4.3:8452748-8452767 MS.gene030640:intron 45.0%
TACTTCTATGACATGGCCTG+AGG - chr4.3:8454407-8454426 MS.gene030640:CDS 45.0%
TATTTATCTGCGCCTCAAGC+TGG + chr4.3:8453568-8453587 None:intergenic 45.0%
TCGCCCCTTCAAGAATTGTT+TGG - chr4.3:8452717-8452736 MS.gene030640:intron 45.0%
TGGATAAAACTGTTCGCGCT+TGG - chr4.3:8452904-8452923 MS.gene030640:CDS 45.0%
TGTCACGAAGATAGTAGCCA+TGG - chr4.3:8454489-8454508 MS.gene030640:CDS 45.0%
TTGGAAGGGAAACAAAGGGA+GGG + chr4.3:8452674-8452693 None:intergenic 45.0%
TTTGGAAGGGAAACAAAGGG+AGG + chr4.3:8452675-8452694 None:intergenic 45.0%
! GTTTTCCCTCACAAAGGCTT+TGG - chr4.3:8452954-8452973 MS.gene030640:intron 45.0%
! TCTGTTTTCATGCCACACCA+AGG + chr4.3:8454249-8454268 None:intergenic 45.0%
AAGATGGCGTTGTGCGCATA+TGG - chr4.3:8452622-8452641 MS.gene030640:intron 50.0%
AGGACTCGCGCGTGTATATT+TGG - chr4.3:8454130-8454149 MS.gene030640:CDS 50.0%
ATAGTAGCAGCTGGCAGTGA+TGG - chr4.3:8454543-8454562 MS.gene030640:CDS 50.0%
GACATCTGACTTCCTGACCA+TGG + chr4.3:8454066-8454085 None:intergenic 50.0%
GGTCAGTATTTGGCTAGTGG+AGG - chr4.3:8452597-8452616 MS.gene030640:CDS 50.0%
GGTCTAACGATAGTAGCAGC+TGG - chr4.3:8454534-8454553 MS.gene030640:CDS 50.0%
TCGTTCTATCAGGCCTTCCA+TGG - chr4.3:8454046-8454065 MS.gene030640:CDS 50.0%
TCTGACTTCCTGACCATGGA+AGG + chr4.3:8454062-8454081 None:intergenic 50.0%
TGCAACAGTTACGCCCTTGA+AGG + chr4.3:8454223-8454242 None:intergenic 50.0%
TGGTCAGGAAGTCAGATGTC+CGG - chr4.3:8454066-8454085 MS.gene030640:CDS 50.0%
TTGGCTAGTGGAGGTGAAGA+TGG - chr4.3:8452606-8452625 MS.gene030640:CDS 50.0%
! ATGACTGGTCGGTCACATTG+GGG - chr4.3:8452130-8452149 MS.gene030640:CDS 50.0%
! CAAGAGCACAGACAGAGAGA+AGG - chr4.3:8452321-8452340 MS.gene030640:CDS 50.0%
! GATGACTGGTCGGTCACATT+GGG - chr4.3:8452129-8452148 MS.gene030640:CDS 50.0%
! GGAAGTTGGTTCTCTCTGGA+TGG - chr4.3:8452223-8452242 MS.gene030640:CDS 50.0%
! TCTGGGAAGTTGGTTCTCTC+TGG - chr4.3:8452219-8452238 MS.gene030640:CDS 50.0%
! TGATGACTGGTCGGTCACAT+TGG - chr4.3:8452128-8452147 MS.gene030640:CDS 50.0%
AAGGCGGCGTGAGTATGAAG+TGG - chr4.3:8452287-8452306 MS.gene030640:CDS 55.0%
CTATCAGGCCTTCCATGGTC+AGG - chr4.3:8454051-8454070 MS.gene030640:CDS 55.0%
GAAGGGAAACAAAGGGAGGG+CGG + chr4.3:8452671-8452690 None:intergenic 55.0%
GAGGTGGATGGAGTTCAGTG+AGG - chr4.3:8452509-8452528 MS.gene030640:CDS 55.0%
GCACAGACAGAGAGAAGGTG+AGG - chr4.3:8452326-8452345 MS.gene030640:CDS 55.0%
ATTGGGGTCGGAGAGGATCG+TGG - chr4.3:8452146-8452165 MS.gene030640:CDS 60.0%
CTGGTCGGTCACATTGGGGT+CGG - chr4.3:8452134-8452153 MS.gene030640:CDS 60.0%
GAGAGGATCGTGGCAAGCAG+TGG - chr4.3:8452156-8452175 MS.gene030640:CDS 60.0%
CGGTCACATTGGGGTCGGAG+AGG - chr4.3:8452139-8452158 MS.gene030640:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 8452072 8454611 8452072 ID=MS.gene030640
chr4.3 mRNA 8452072 8454611 8452072 ID=MS.gene030640.t1;Parent=MS.gene030640
chr4.3 exon 8453901 8454611 8453901 ID=MS.gene030640.t1.exon1;Parent=MS.gene030640.t1
chr4.3 CDS 8453901 8454611 8453901 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8453708 8453798 8453708 ID=MS.gene030640.t1.exon2;Parent=MS.gene030640.t1
chr4.3 CDS 8453708 8453798 8453708 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8453394 8453551 8453394 ID=MS.gene030640.t1.exon3;Parent=MS.gene030640.t1
chr4.3 CDS 8453394 8453551 8453394 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8453223 8453274 8453223 ID=MS.gene030640.t1.exon4;Parent=MS.gene030640.t1
chr4.3 CDS 8453223 8453274 8453223 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8453049 8453128 8453049 ID=MS.gene030640.t1.exon5;Parent=MS.gene030640.t1
chr4.3 CDS 8453049 8453128 8453049 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8452838 8452931 8452838 ID=MS.gene030640.t1.exon6;Parent=MS.gene030640.t1
chr4.3 CDS 8452838 8452931 8452838 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
chr4.3 exon 8452072 8452625 8452072 ID=MS.gene030640.t1.exon7;Parent=MS.gene030640.t1
chr4.3 CDS 8452072 8452625 8452072 ID=cds.MS.gene030640.t1;Parent=MS.gene030640.t1
Gene Sequence

>MS.gene030640

ATGGATTTAGCTTACACTTCTTCCAGGGTTTGTTCACAAGAGAAAACAACGAGTTTTGATGACTGGTCGGTCACATTGGGGTCGGAGAGGATCGTGGCAAGCAGTGGAGCAGTCTCAAATGCAAGCATTTCACCTTCTGGTAAAGTATCTGGGAAGTTGGTTCTCTCTGGATGGAATGCAGCTTCTGAAGCTGAAGTCTTGTTGGAAGATCTTAAAAGGCGGCGTGAGTATGAAGTGGACGCTAGTTTTCAAGAGCACAGACAGAGAGAAGGTGAGGCAAAAGAAGAATTTTGGGATTTCGATAATGGTAAAGCTAATAGGAAAAACTGGTTGAAGCGTTTTGTGAACATCAGGAAAGGCGACAAAGGAAATTTTAGATCAAAACTGAATGCAGCAACGAATAAAACTCGTAGAGTGAAGGTAAAGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGAGGTATACATTGGACAAGAAATTAGAGCTCACAAAGGACTAATATGGACTATGAAATTCAGTCCCAATGGTCAGTATTTGGCTAGTGGAGGTGAAGATGGCGTTGTGCGCATATGGCGCGTTTTGTCACGTGACAAAAGCCGCCCTCCCTTTGTTTCCCTTCCAAATGATATTTTTCAAATTGAGGAATCGCCCCTTCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCCTGGTCTAATTCAGATGTGAGTTTAACTTGCAGAACCAATGTTGCAATCTGTTTTATATGTTTATTCTGCTTGCTAATCTGATATATTTTAAAGCTGATAAAAAAATACATGTTGCAGATTCTTCTTTCGTCTTCGATGGATAAAACTGTTCGCGCTTGGAAAATCAGTTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGGCTTTGGTAAGTATGAGAGAATCACACTTTTTATACCTGTATTTTCCACAACTATGTTTAGTTCGTTAATAAATTTAGACCATATGCTTTGTTCATAACATTGCCATGCTCTTAGACATTAAACATGATCATAATTGTGCCCTCTTCTATAATTGGATACAGTGACATGCATTCAATTCAACCCTGTCAATGAAAATTACTTTATCAGTGGATCCATTGATGGTAAAGTTCGAATATGGGGAATACGTGAAGAACGAGTTATTGACTGGGCAGATATACGGGATGTCATAAGTGCTATAAGTTATCAACAAGATGGAAAAGTATGCTATCAATACTCATGACCAATGATTTTCACGATTTTTTGCGTCTTTATGCATACTTTGACAAAGAAATCTTGCGGCCATGAGATTGATGAATCTATTACATTTTACATGTGCAGGGATTTGTAGTTGGTTCTCTTACAGGCACATGCCGTTTTTATGTTGCTTCAGGTATGTACATGTGGATCACCAATTGGTGCTACATTCATGAGTTTTCTTTACCGAAGATAAAATAGTTTCTAAATCAGATTTCTAATGATTTTAGGAAAATATTTCCAGCTTGAGGCGCAGATAAATATCCATGGAAAGAAGAAAGTATTAGGCAACAAGATTACTGGCATTCAGGTTAGAATCTAGAAATTCTTTACTATCAAAGCATTTTAATTTGTATTCCGGAAAGAAAGAAAAAAACCTTATTTTGTACTTCAATTGTTGTATTTATCACATCCATGTTGTTTGCAGTTCTTCCAAAACAACTGTCAGAGAATTATGATCACATCTGAAGATTCCAAAATCTGCATATTGGATCGAACTGAGATTGTTCAGAAATACAAAGGTACAACACTTAATGGTTGTCACAATCTGGACCACAAATTTAAACCTTGTTTAGAACTTTGTTTAGGTATTTTATATGCATTGTATGATAAATTATCAAATCTTAAACATAATGTGTATTCACTGACACATTGATAAATTTTAGTATGTTTCTATTGATAGTGTTTGGTTTGCAAGAAAAACTTAAGTCTGTCAGTTTTCTCGTTCTATCAGGCCTTCCATGGTCAGGAAGTCAGATGTCCGGTTCATTTACATCAAGTGGGAAACATATCATTTCAGTTGGAGAGGACTCGCGCGTGTATATTTGGAACTTCAATGACTTCAAAAGTGGTTCTTCGAAAAAAATGAAATCGGACTATTCTTGTGAGTACTTTTCCTTCAAGGGCGTAACTGTTGCAATACCTTGGTGTGGCATGAAAACAGATAGACGTTGCTGTAGAATTAACTTTTCTCACTATTCTCTGGAAGCAAAAACCAAGCTAGAGGTTACTTCTGAGGTTAGAGATACAGAACGATTTTCTCTTGGTAATTGGTTCTTCATTGATGGTACATGTCGAGGTTCTACTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAGAAGATGAATGTGATCATCAAAATTTATGTCACGAAGATAGTAGCCATGGAAGGAATATATCAGAAACATGGGGTCTAACGATAGTAGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAATTTTGGCTTGCCTGTTAGGCTTTAG

Protein sequence

>MS.gene030640.t1

MDLAYTSSRVCSQEKTTSFDDWSVTLGSERIVASSGAVSNASISPSGKVSGKLVLSGWNAASEAEVLLEDLKRRREYEVDASFQEHRQREGEAKEEFWDFDNGKANRKNWLKRFVNIRKGDKGNFRSKLNAATNKTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVLSRDKSRPPFVSLPNDIFQIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCIQFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTCRFYVASGKYFQLEAQINIHGKKKVLGNKITGIQFFQNNCQRIMITSEDSKICILDRTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDFKSGSSKKMKSDYSCEYFSFKGVTVAIPWCGMKTDRRCCRINFSHYSLEAKTKLEVTSEVRDTERFSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQNLCHEDSSHGRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL