AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030817

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030817.t1 MTR_8g090190 99.729 369 1 0 1 369 1 369 0.0 768
MS.gene030817.t1 MTR_3g087140 87.052 363 47 0 1 363 1 363 0.0 665
MS.gene030817.t1 MTR_6g022310 30.704 355 191 10 17 364 121 427 2.39e-37 142
MS.gene030817.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 7.01e-36 139
MS.gene030817.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 7.49e-36 139
MS.gene030817.t1 MTR_3g100480 29.462 353 198 10 21 365 582 891 2.34e-35 137
MS.gene030817.t1 MTR_5g030360 30.259 347 186 9 24 364 155 451 5.78e-35 136
MS.gene030817.t1 MTR_6g022290 29.775 356 193 11 17 364 23 329 3.15e-33 130
MS.gene030817.t1 MTR_3g100480 27.441 379 202 10 21 365 582 921 5.49e-33 130
MS.gene030817.t1 MTR_5g066000 28.857 350 199 10 23 365 542 848 2.49e-32 129
MS.gene030817.t1 MTR_1g014680 29.321 324 181 9 24 334 182 470 1.93e-31 126
MS.gene030817.t1 MTR_4g115880 26.744 430 187 14 16 360 192 578 2.24e-31 125
MS.gene030817.t1 MTR_2g071620 29.714 350 196 10 24 365 465 772 2.35e-31 125
MS.gene030817.t1 MTR_6g022300 29.023 348 192 11 24 364 68 367 6.27e-31 124
MS.gene030817.t1 MTR_1g014260 29.223 373 182 15 16 340 176 514 2.30e-30 122
MS.gene030817.t1 MTR_5g032380 28.483 323 192 8 23 338 424 714 9.10e-30 121
MS.gene030817.t1 MTR_8g067060 27.011 348 195 9 24 364 204 499 3.00e-28 116
MS.gene030817.t1 MTR_8g471100 27.011 348 195 9 24 364 213 508 3.48e-28 115
MS.gene030817.t1 MTR_5g430360 30.272 294 151 9 78 364 37 283 5.84e-28 115
MS.gene030817.t1 MTR_2g070390 27.083 336 198 6 23 342 22 326 1.15e-27 114
MS.gene030817.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 1.62e-27 114
MS.gene030817.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 1.95e-27 114
MS.gene030817.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 1.99e-27 114
MS.gene030817.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 2.01e-27 114
MS.gene030817.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.66e-20 92.8
MS.gene030817.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.84e-20 92.8
MS.gene030817.t1 MTR_8g064910 26.781 351 198 14 24 364 55 356 4.32e-20 91.3
MS.gene030817.t1 MTR_1g041240 26.706 337 192 11 24 347 201 495 7.42e-20 92.0
MS.gene030817.t1 MTR_1g041240 26.706 337 192 11 24 347 202 496 7.92e-20 91.7
MS.gene030817.t1 MTR_1g041240 26.706 337 192 11 24 347 200 494 8.06e-20 91.7
MS.gene030817.t1 MTR_7g088760 33.129 163 87 6 208 363 754 901 3.14e-17 84.0
MS.gene030817.t1 MTR_7g088760 33.129 163 87 6 208 363 771 918 3.34e-17 84.0
MS.gene030817.t1 MTR_2g087710 32.143 168 90 7 208 366 717 869 5.79e-15 77.0
MS.gene030817.t1 MTR_7g106570 33.333 168 87 7 204 363 738 888 1.30e-14 75.9
MS.gene030817.t1 MTR_1g077980 31.638 177 100 6 194 364 751 912 2.50e-14 75.1
MS.gene030817.t1 MTR_1g077980 28.019 207 135 6 19 218 314 513 4.59e-11 64.7
MS.gene030817.t1 MTR_0279s0020 24.642 349 187 14 24 360 6 290 7.72e-14 72.4
MS.gene030817.t1 MTR_0279s0020 24.496 347 186 14 30 364 3 285 2.83e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030817.t1 AT4G39910 88.889 369 37 3 1 365 1 369 0.0 674
MS.gene030817.t1 AT2G22310 88.493 365 39 2 1 364 1 363 0.0 669
MS.gene030817.t1 AT2G22310 87.273 330 39 2 36 364 4 331 0.0 595
MS.gene030817.t1 AT2G22310 87.423 326 38 2 40 364 3 326 0.0 589
MS.gene030817.t1 AT4G24560 27.011 348 207 9 24 365 543 849 8.50e-34 133
MS.gene030817.t1 AT5G57990 28.280 343 197 12 24 360 108 407 2.12e-33 132
MS.gene030817.t1 AT5G65450 30.380 316 180 9 23 330 348 631 9.68e-32 127
MS.gene030817.t1 AT5G65450 30.380 316 180 9 23 330 329 612 1.01e-31 127
MS.gene030817.t1 AT3G14400 29.607 331 200 5 23 342 24 332 1.43e-31 126
MS.gene030817.t1 AT2G24640 27.966 354 205 12 24 369 5 316 1.69e-30 122
MS.gene030817.t1 AT2G24640 27.966 354 205 12 24 369 175 486 3.13e-30 122
MS.gene030817.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.56e-30 121
MS.gene030817.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.56e-30 121
MS.gene030817.t1 AT1G17110 28.116 345 198 10 24 360 443 745 8.07e-30 121
MS.gene030817.t1 AT4G31670 27.044 318 196 9 24 334 169 457 1.54e-29 120
MS.gene030817.t1 AT4G17895 29.261 352 187 11 24 364 177 477 1.66e-26 111
MS.gene030817.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.50e-26 109
MS.gene030817.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.50e-26 109
MS.gene030817.t1 AT3G49600 27.515 338 195 8 24 352 107 403 8.25e-26 109
MS.gene030817.t1 AT5G46740 29.513 349 196 11 24 364 164 470 1.14e-23 103
MS.gene030817.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene030817.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene030817.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene030817.t1 AT3G11910 27.114 343 195 12 22 351 197 497 4.01e-20 92.8
MS.gene030817.t1 AT3G11910 27.114 343 195 12 22 351 197 497 4.01e-20 92.8
MS.gene030817.t1 AT3G11910 27.114 343 195 12 22 351 196 496 4.16e-20 92.8
MS.gene030817.t1 AT3G11910 27.114 343 195 12 22 351 196 496 4.16e-20 92.8
MS.gene030817.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.37e-19 91.3
MS.gene030817.t1 AT5G06600 27.139 339 192 12 22 347 197 493 1.41e-19 91.3
MS.gene030817.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.58e-19 90.9
MS.gene030817.t1 AT5G10790 24.403 377 203 9 16 339 43 390 2.64e-19 89.4
MS.gene030817.t1 AT5G10790 24.403 377 203 9 16 339 172 519 7.58e-19 88.6
MS.gene030817.t1 AT5G46740 32.323 198 112 6 173 364 80 261 1.79e-16 81.3
MS.gene030817.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene030817.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene030817.t1 AT5G22030 31.325 166 93 6 204 363 719 869 1.61e-14 75.5
MS.gene030817.t1 AT5G22030 31.325 166 93 6 204 363 761 911 1.73e-14 75.5
MS.gene030817.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene030817.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene030817.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene030817.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene030817.t1 AT4G10570 33.133 166 90 6 204 363 745 895 3.41e-14 74.7
MS.gene030817.t1 AT1G32850 31.953 169 90 7 203 363 729 880 4.10e-13 71.2

Find 75 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTACCCAAGTAATTAA+AGG 0.260330 4.2:+11248041 None:intergenic
GTAATTAAAGGCTCTTTCTT+AGG 0.269652 4.2:+11248053 None:intergenic
TCTGAAGGTGTTGGTGTCTC+TGG 0.275197 4.2:+11248116 None:intergenic
TCCGCCGTGCAAACGTTCTT+TGG 0.310357 4.2:-11246839 MS.gene030817:CDS
CCAAAGTAACGTTCTCCTTC+AGG 0.310974 4.2:+11251698 None:intergenic
GAATGAACTTGTCGACATTC+TGG 0.315995 4.2:-11248168 MS.gene030817:CDS
GAACAACTGCTGGAGTATTA+TGG 0.316104 4.2:-11250869 MS.gene030817:CDS
AACGTTCTCCTTCAGGGAAT+TGG 0.317047 4.2:+11251705 None:intergenic
CTCCATCTAGTTACTGTTAC+CGG 0.321318 4.2:+11246751 None:intergenic
CAACCTCTGTACAAATCGTT+TGG 0.322213 4.2:+11250053 None:intergenic
TACTTTGGTCTTGAGAATTT+CGG 0.342794 4.2:-11251683 MS.gene030817:CDS
AAAGAAACCTCCTCACATTC+TGG 0.344711 4.2:-11247110 MS.gene030817:CDS
AGAAAGAGCCTTTAATTACT+TGG 0.355430 4.2:-11248049 MS.gene030817:CDS
TATGGAAATAACAAAACCTT+AGG 0.373430 4.2:-11250851 MS.gene030817:CDS
TTGCAAGCACCTTGTCTCAT+TGG 0.375899 4.2:+11247834 None:intergenic
TTCAAGAATGGTCATGCTAA+TGG 0.388068 4.2:-11248077 MS.gene030817:CDS
TCCATTTCGGGAACAACTGC+TGG 0.393629 4.2:-11250879 MS.gene030817:CDS
AACCTCTGTACAAATCGTTT+GGG 0.398526 4.2:+11250054 None:intergenic
CCTTCAGAAAAGGTTGCAAA+TGG 0.403517 4.2:-11248101 MS.gene030817:CDS
TCCAGCAGTTGTTCCCGAAA+TGG 0.416148 4.2:+11250878 None:intergenic
CACGTGCTGATGGGTGCTGC+TGG 0.422192 4.2:-11251755 None:intergenic
ATGGAAATAACAAAACCTTA+GGG 0.426140 4.2:-11250850 MS.gene030817:CDS
TCTCAAGCGGTTTAAATACA+TGG 0.443043 4.2:-11247080 MS.gene030817:CDS
CCTGAAGGAGAACGTTACTT+TGG 0.445835 4.2:-11251698 MS.gene030817:CDS
GAAAGAGCCTTTAATTACTT+GGG 0.460212 4.2:-11248048 MS.gene030817:CDS
CTTTCGTAGCTATATGCATC+AGG 0.467030 4.2:-11250013 MS.gene030817:intron
GTTTAAATACATGGAACAGC+TGG 0.470114 4.2:-11247071 MS.gene030817:CDS
ACCGAGTGCCTTCTCAAGCT+TGG 0.472929 4.2:+11251730 None:intergenic
TATTGAGTATTCTCTATTTG+CGG 0.483092 4.2:-11246972 MS.gene030817:CDS
CAAAGTAACGTTCTCCTTCA+GGG 0.493408 4.2:+11251699 None:intergenic
GACACCAACACCTTCAGAAA+AGG 0.494615 4.2:-11248111 MS.gene030817:CDS
CTGACATAATGCCCATGGTT+GGG 0.500962 4.2:+11246926 None:intergenic
CATTCTGGAGAAAGAGGCTC+AGG 0.502874 4.2:-11248153 MS.gene030817:CDS
TTCTATGAGAGCATTGGGCC+CGG 0.506913 4.2:-11246770 MS.gene030817:CDS
GTTGCAAATGGGTTCAAGAA+TGG 0.518444 4.2:-11248089 MS.gene030817:CDS
TATTACTCAGCTTCAGCTCA+AGG 0.525905 4.2:+11247011 None:intergenic
GTTGGCAGTGGTCCCAACCA+TGG 0.526315 4.2:-11246938 MS.gene030817:CDS
CTTCAGAAAAGGTTGCAAAT+GGG 0.537604 4.2:-11248100 MS.gene030817:CDS
AGTTCGCAGAAGAAGAAAAC+CGG 0.539192 4.2:-11250087 MS.gene030817:CDS
TAACAAAACCTTAGGGGATG+CGG 0.540455 4.2:-11250843 MS.gene030817:CDS
TATTCAACTAACACCGACCA+TGG 0.551966 4.2:-11246803 MS.gene030817:CDS
TTCTGGTCATTCATCTCAAG+CGG 0.553690 4.2:-11247093 MS.gene030817:CDS
TGTCGACATTCTGGAGAAAG+AGG 0.558202 4.2:-11248159 MS.gene030817:CDS
AACGTTCTTTGGATCACCAC+AGG 0.559651 4.2:-11246828 MS.gene030817:CDS
TTGGCAGTGGTCCCAACCAT+GGG 0.561554 4.2:-11246937 MS.gene030817:CDS
ATTACTCAGCTTCAGCTCAA+GGG 0.562003 4.2:+11247012 None:intergenic
TCCATCTAGTTACTGTTACC+GGG 0.563825 4.2:+11246752 None:intergenic
TGCTGGTTCCAAGCTTGAGA+AGG 0.565161 4.2:-11251738 MS.gene030817:CDS
GTAGTTGTTCATGTTGGCAG+TGG 0.568127 4.2:-11246950 MS.gene030817:CDS
TTTGCGGTAGTTGTTCATGT+TGG 0.570867 4.2:-11246956 MS.gene030817:CDS
CTCCCAAACGATTTGTACAG+AGG 0.577523 4.2:-11250056 MS.gene030817:CDS
TCCAAGCTTGAGAAGGCACT+CGG 0.581992 4.2:-11251731 MS.gene030817:CDS
TTACTCAGCTTCAGCTCAAG+GGG 0.593719 4.2:+11247013 None:intergenic
TTGTGAAAAGCCATAACCAC+TGG 0.595274 4.2:-11246901 MS.gene030817:CDS
TTTAAATACATGGAACAGCT+GGG 0.600093 4.2:-11247070 MS.gene030817:CDS
AATGTGAAACTGTGACAGCT+AGG 0.603275 4.2:-11247813 MS.gene030817:CDS
CATAGAACAAAATGTACCCA+TGG 0.607092 4.2:+11246786 None:intergenic
CTCGGTGACCAATTCCCTGA+AGG 0.615354 4.2:-11251713 MS.gene030817:CDS
GCTGACATAATGCCCATGGT+TGG 0.618993 4.2:+11246925 None:intergenic
CAAGGCTGACATAATGCCCA+TGG 0.620655 4.2:+11246921 None:intergenic
CTCCGCATTCAACGTCTCAG+TGG 0.635411 4.2:+11247714 None:intergenic
CACTGAGACGTTGAATGCGG+AGG 0.643034 4.2:-11247713 MS.gene030817:CDS
TGGAAATAACAAAACCTTAG+GGG 0.647882 4.2:-11250849 MS.gene030817:CDS
ATTCAACTAACACCGACCAT+GGG 0.648378 4.2:-11246802 MS.gene030817:CDS
GTGTTAGTTGAATATTCCTG+TGG 0.649469 4.2:+11246812 None:intergenic
TCGTTTGGGAGCAATGACAC+CGG 0.652677 4.2:+11250068 None:intergenic
TTCCACTGAGACGTTGAATG+CGG 0.653862 4.2:-11247716 MS.gene030817:CDS
ATGTGAAACTGTGACAGCTA+GGG 0.662477 4.2:-11247812 MS.gene030817:CDS
TGATCCAAAGAACGTTTGCA+CGG 0.665690 4.2:+11246835 None:intergenic
GAACAAAATGTACCCATGGT+CGG 0.668984 4.2:+11246790 None:intergenic
TGAATGACCAGAATGTGAGG+AGG 0.681890 4.2:+11247103 None:intergenic
GGTAAGACAACTTCTTGTAG+CGG 0.683615 4.2:+11247047 None:intergenic
AGATGAATGACCAGAATGTG+AGG 0.695994 4.2:+11247100 None:intergenic
GAATACTCACCAATGAGACA+AGG 0.708354 4.2:-11247843 MS.gene030817:CDS
TCCAAAGAACGTTTGCACGG+CGG 0.730946 4.2:+11246838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGACAAAAAAAAAT+TGG + chr4.2:11250511-11250530 None:intergenic 10.0%
!! AAATAAAAAATAAGAAAATC+TGG + chr4.2:11248034-11248053 None:intergenic 10.0%
!! ATATGTTATTAAAGAAAATA+TGG + chr4.2:11248007-11248026 None:intergenic 10.0%
!! ATTAACTATTATTATATATC+CGG - chr4.2:11249832-11249851 MS.gene030817:intron 10.0%
!! AAATTCAGAAAAGAAAAAAA+TGG + chr4.2:11246990-11247009 None:intergenic 15.0%
!! ATATAAATAAGACATTAGTT+TGG - chr4.2:11248618-11248637 MS.gene030817:intron 15.0%
!! CTGAAAAATTATTTATAAGT+GGG - chr4.2:11249032-11249051 MS.gene030817:intron 15.0%
!! GAAAAGAAAAAAAAACTAAT+TGG + chr4.2:11249968-11249987 None:intergenic 15.0%
!! TAATACTTAGAATCATAATT+AGG + chr4.2:11247500-11247519 None:intergenic 15.0%
!! TAATTGTTGAATAATCTATA+AGG - chr4.2:11247044-11247063 MS.gene030817:CDS 15.0%
!! TTAATAATGTAAAGTGATAA+GGG + chr4.2:11249897-11249916 None:intergenic 15.0%
!! TTAATTCACAAAAACATTTA+AGG - chr4.2:11248949-11248968 MS.gene030817:intron 15.0%
!! TTAGATTTATATCTATATTG+TGG - chr4.2:11250606-11250625 MS.gene030817:intron 15.0%
!!! ACTTATAAATAATTTTTCAG+GGG + chr4.2:11249032-11249051 None:intergenic 15.0%
!!! CACTTATAAATAATTTTTCA+GGG + chr4.2:11249033-11249052 None:intergenic 15.0%
!!! TGTTAATTTTAATGTATCAT+TGG - chr4.2:11250208-11250227 MS.gene030817:intron 15.0%
!!! TTGAATATCATGTATATTTT+TGG - chr4.2:11251138-11251157 MS.gene030817:intron 15.0%
!!! TTTTTAACTTAAGCATTTAA+AGG + chr4.2:11249231-11249250 None:intergenic 15.0%
!! AAAAAATAAGAAAATCTGGT+AGG + chr4.2:11248030-11248049 None:intergenic 20.0%
!! AAAAATTATTTATAAGTGGG+AGG - chr4.2:11249035-11249054 MS.gene030817:intron 20.0%
!! ATAAACATTTGCAATATCAT+TGG - chr4.2:11249502-11249521 MS.gene030817:intron 20.0%
!! ATAAATTGTGAACTTTGTAA+TGG - chr4.2:11250560-11250579 MS.gene030817:intron 20.0%
!! ATGAAAAAGTAGTTATAAGT+GGG - chr4.2:11249731-11249750 MS.gene030817:intron 20.0%
!! CCTGAAAAATTATTTATAAG+TGG - chr4.2:11249031-11249050 MS.gene030817:intron 20.0%
!! CTTAATAATGTAAAGTGATA+AGG + chr4.2:11249898-11249917 None:intergenic 20.0%
!! GAAATAAATATGTTGAATTC+AGG + chr4.2:11248382-11248401 None:intergenic 20.0%
!! TAAAAACTAGACAAAATATG+AGG + chr4.2:11250244-11250263 None:intergenic 20.0%
!! TAAGTATTAAGTTTGAAGAT+GGG - chr4.2:11247511-11247530 MS.gene030817:intron 20.0%
!! TATTTCATCATAGAATGAAA+AGG + chr4.2:11249995-11250014 None:intergenic 20.0%
!!! AAACTCTTCAAAAATTTGTT+TGG + chr4.2:11247025-11247044 None:intergenic 20.0%
!!! ATTTTTGTTATTTACCTGTT+TGG - chr4.2:11247067-11247086 MS.gene030817:CDS 20.0%
!!! CCACTTATAAATAATTTTTC+AGG + chr4.2:11249034-11249053 None:intergenic 20.0%
!!! GTTTGTTTGTTATATTTTTG+TGG - chr4.2:11247533-11247552 MS.gene030817:intron 20.0%
!!! TCATATCTAAAGTCTTAATT+TGG + chr4.2:11249807-11249826 None:intergenic 20.0%
!!! TTATACAAATGATTTGTTTC+AGG + chr4.2:11248297-11248316 None:intergenic 20.0%
!!! TTCAACATATTTATTTCTGT+TGG - chr4.2:11248385-11248404 MS.gene030817:intron 20.0%
! AAATGTTTATAATGACACAG+TGG + chr4.2:11249492-11249511 None:intergenic 25.0%
! AACACAAATTTATAACCTGA+AGG - chr4.2:11249664-11249683 MS.gene030817:intron 25.0%
! AACTATTATTATATATCCGG+TGG - chr4.2:11249835-11249854 MS.gene030817:intron 25.0%
! AATAATTCTGTAACTGATGT+TGG - chr4.2:11250011-11250030 MS.gene030817:intron 25.0%
! ACACAAACAATAACAGAAAA+AGG + chr4.2:11248057-11248076 None:intergenic 25.0%
! ACACAAATTTATAACCTGAA+GGG - chr4.2:11249665-11249684 MS.gene030817:intron 25.0%
! ACAGAATAAAAAAGTAACAC+TGG + chr4.2:11248870-11248889 None:intergenic 25.0%
! AGAGATGCTATTATCTATAT+TGG - chr4.2:11248778-11248797 MS.gene030817:intron 25.0%
! AGAGGGAAATAAAATAAATG+TGG - chr4.2:11251093-11251112 MS.gene030817:intron 25.0%
! ATAATTCTGTAACTGATGTT+GGG - chr4.2:11250012-11250031 MS.gene030817:intron 25.0%
! ATGGAAAAACAAACATGTTA+CGG + chr4.2:11251198-11251217 None:intergenic 25.0%
! ATGGAAATAACAAAACCTTA+GGG - chr4.2:11247653-11247672 MS.gene030817:intron 25.0%
! CAAGGAAATGTAAATAAACA+TGG + chr4.2:11248720-11248739 None:intergenic 25.0%
! CAGTTAAAAGTAGAAAACAA+TGG + chr4.2:11251072-11251091 None:intergenic 25.0%
! CATGAAAAAGTAGTTATAAG+TGG - chr4.2:11249730-11249749 MS.gene030817:intron 25.0%
! CTAAGTATTAAGTTTGAAGA+TGG - chr4.2:11247510-11247529 MS.gene030817:intron 25.0%
! GAACTTATTCTTAACACTTA+TGG + chr4.2:11248527-11248546 None:intergenic 25.0%
! TAAAAAGTTCAAGAATTCGT+GGG + chr4.2:11250313-11250332 None:intergenic 25.0%
! TAATACAACAATGTTACTGT+CGG - chr4.2:11250266-11250285 MS.gene030817:intron 25.0%
! TAGAACTTACATTCAATTCT+TGG + chr4.2:11249450-11249469 None:intergenic 25.0%
! TATGGAAATAACAAAACCTT+AGG - chr4.2:11247652-11247671 MS.gene030817:intron 25.0%
! TATTGAGTATTCTCTATTTG+CGG - chr4.2:11251531-11251550 MS.gene030817:intron 25.0%
! TCAAATAATCAAATCCAAAC+AGG + chr4.2:11247084-11247103 None:intergenic 25.0%
! TGAACAGATATCTGAAAATT+TGG + chr4.2:11251007-11251026 None:intergenic 25.0%
! TTGCAAATCACAAAAAACAA+CGG + chr4.2:11247413-11247432 None:intergenic 25.0%
!! ACAAGTTGAGAATAAAAGAT+AGG - chr4.2:11248108-11248127 MS.gene030817:CDS 25.0%
!! AGATATAGTTGATACTTGAT+AGG + chr4.2:11248322-11248341 None:intergenic 25.0%
!! AGGTATATGCTTTTATATTG+TGG - chr4.2:11250839-11250858 MS.gene030817:CDS 25.0%
!! ATAAGACATTAGTTTGGATA+TGG - chr4.2:11248624-11248643 MS.gene030817:intron 25.0%
!! ATCTAAAGTCTTAATTTGGT+CGG + chr4.2:11249803-11249822 None:intergenic 25.0%
!! CAAGTTGAGAATAAAAGATA+GGG - chr4.2:11248109-11248128 MS.gene030817:CDS 25.0%
!! TAAGACATTAGTTTGGATAT+GGG - chr4.2:11248625-11248644 MS.gene030817:intron 25.0%
!! TATACTTTTGTGTTCCATTT+CGG - chr4.2:11247611-11247630 MS.gene030817:intron 25.0%
!! TCAAATATGAAAAAGCATAG+AGG + chr4.2:11247773-11247792 None:intergenic 25.0%
!! TTTGCTTGTTGAAAATGAAA+AGG + chr4.2:11251175-11251194 None:intergenic 25.0%
!!! ATATTTTTGTGGAGATTTCT+GGG - chr4.2:11247544-11247563 MS.gene030817:intron 25.0%
!!! ATGTTTGTTTTTCCATTGAT+TGG - chr4.2:11251202-11251221 MS.gene030817:intron 25.0%
!!! ATTTTAGTAGTTTCCTGTAA+AGG - chr4.2:11251037-11251056 MS.gene030817:intron 25.0%
!!! CATTGTTTTCTACTTTTAAC+TGG - chr4.2:11251070-11251089 MS.gene030817:intron 25.0%
!!! TATAGCGATTAGTCTAAATT+CGG + chr4.2:11247346-11247365 None:intergenic 25.0%
!!! TATATTTTTGTGGAGATTTC+TGG - chr4.2:11247543-11247562 MS.gene030817:intron 25.0%
!!! TGGTTTTAAAACCAAAACTA+AGG + chr4.2:11247987-11248006 None:intergenic 25.0%
!!! TGTTACTTTTTTATTCTGTC+AGG - chr4.2:11248871-11248890 MS.gene030817:intron 25.0%
!!! TTATAAATTTGTGTTGACTC+TGG + chr4.2:11249659-11249678 None:intergenic 25.0%
!!! TTGTTTTTCTCAATTGCAAA+GGG - chr4.2:11249351-11249370 MS.gene030817:intron 25.0%
!!! TTTTGTTGTTGCAACAAATT+TGG - chr4.2:11250530-11250549 MS.gene030817:intron 25.0%
ACAATAGAGTTTACTTTGTG+AGG - chr4.2:11248263-11248282 MS.gene030817:intron 30.0%
AGAAAGAGCCTTTAATTACT+TGG - chr4.2:11250454-11250473 MS.gene030817:intron 30.0%
AGATAATAGCATCTCTAACT+AGG + chr4.2:11248774-11248793 None:intergenic 30.0%
ATTAAGCCTGCTAATAGATT+TGG - chr4.2:11249912-11249931 MS.gene030817:intron 30.0%
ATTTAGACTAATCGCTATAG+TGG - chr4.2:11247347-11247366 MS.gene030817:intron 30.0%
CAAAAAAAAATTGGCAAAGC+AGG + chr4.2:11250502-11250521 None:intergenic 30.0%
CAAAAAATAACCAGTGGTTA+TGG + chr4.2:11251615-11251634 None:intergenic 30.0%
CACAAAGTAAACTCTATTGT+TGG + chr4.2:11248263-11248282 None:intergenic 30.0%
CAGGTAATCAATTTGTAGTT+TGG - chr4.2:11247721-11247740 MS.gene030817:CDS 30.0%
GAAAGAGCCTTTAATTACTT+GGG - chr4.2:11250455-11250474 MS.gene030817:intron 30.0%
GAAATACGATAATGCAGAAA+AGG - chr4.2:11249419-11249438 MS.gene030817:intron 30.0%
GATATTTATTTGTGATGCAG+TGG - chr4.2:11249318-11249337 MS.gene030817:intron 30.0%
GTAAAAAGTTCAAGAATTCG+TGG + chr4.2:11250314-11250333 None:intergenic 30.0%
GTAATTAAAGGCTCTTTCTT+AGG + chr4.2:11250453-11250472 None:intergenic 30.0%
TAATGTAAAGTGATAAGGGA+TGG + chr4.2:11249893-11249912 None:intergenic 30.0%
TATGCTACAGTGAAAATTCA+TGG + chr4.2:11250094-11250113 None:intergenic 30.0%
TGAATAACAATTCGATGTAC+AGG + chr4.2:11248549-11248568 None:intergenic 30.0%
TGCATTGTCTTCACTAATTT+CGG - chr4.2:11247825-11247844 MS.gene030817:CDS 30.0%
TGGAAATAACAAAACCTTAG+GGG - chr4.2:11247654-11247673 MS.gene030817:intron 30.0%
TGTTATTGTTTGTGTGTTGA+AGG - chr4.2:11248062-11248081 MS.gene030817:CDS 30.0%
TTGTGTACCCAAGTAATTAA+AGG + chr4.2:11250465-11250484 None:intergenic 30.0%
TTTAAATACATGGAACAGCT+GGG - chr4.2:11251433-11251452 MS.gene030817:intron 30.0%
! ATACTTTTGTGTTCCATTTC+GGG - chr4.2:11247612-11247631 MS.gene030817:intron 30.0%
! ATTAAGTTGTTCTTCCAAAC+AGG - chr4.2:11247474-11247493 MS.gene030817:intron 30.0%
! CACTACGATTTAGAATGAAT+CGG + chr4.2:11246914-11246933 None:intergenic 30.0%
! TGGAAATTTTGTGCATTACA+TGG - chr4.2:11247741-11247760 MS.gene030817:CDS 30.0%
! TTATTGTAACAGCGTTTTAC+AGG - chr4.2:11246852-11246871 MS.gene030817:CDS 30.0%
!! AAATTTGTGTTGACTCTTGT+GGG + chr4.2:11249655-11249674 None:intergenic 30.0%
!! ACTTCATTTGTTTTCTGAAC+GGG - chr4.2:11251226-11251245 MS.gene030817:intron 30.0%
!! ATTTTGTTCTATGAGAGCAT+TGG - chr4.2:11251727-11251746 MS.gene030817:CDS 30.0%
!! CACTTCATTTGTTTTCTGAA+CGG - chr4.2:11251225-11251244 MS.gene030817:intron 30.0%
!! CTTGTTTTTCTCAATTGCAA+AGG - chr4.2:11249350-11249369 MS.gene030817:intron 30.0%
!! GTTTTTGCTATCCTTAGTTT+TGG - chr4.2:11247973-11247992 MS.gene030817:intron 30.0%
!! TAAATTTGTGTTGACTCTTG+TGG + chr4.2:11249656-11249675 None:intergenic 30.0%
!! TACTTTGGTCTTGAGAATTT+CGG - chr4.2:11246820-11246839 MS.gene030817:CDS 30.0%
!! TGAAAGCAAATTCTAAGATG+AGG - chr4.2:11249205-11249224 MS.gene030817:intron 30.0%
!! TTTCTACTTTTAACTGGAGA+GGG - chr4.2:11251076-11251095 MS.gene030817:intron 30.0%
!! TTTTCTACTTTTAACTGGAG+AGG - chr4.2:11251075-11251094 MS.gene030817:intron 30.0%
!!! ACTTTTTTATTCTGTCAGGT+TGG - chr4.2:11248875-11248894 MS.gene030817:intron 30.0%
!!! CTTACAAGCTTAGTTTTGTA+GGG - chr4.2:11249068-11249087 MS.gene030817:intron 30.0%
!!! TTTTGTTCTATGAGAGCATT+GGG - chr4.2:11251728-11251747 MS.gene030817:CDS 30.0%
AAAAGCTTGTAACAATTCCG+AGG + chr4.2:11248928-11248947 None:intergenic 35.0%
AAAGCTTGTAACAATTCCGA+GGG + chr4.2:11248927-11248946 None:intergenic 35.0%
AACCTCTGTACAAATCGTTT+GGG + chr4.2:11248452-11248471 None:intergenic 35.0%
AAGTTCTACCTGCAAAACAA+AGG - chr4.2:11249462-11249481 MS.gene030817:intron 35.0%
ACATTCTTCACCTTACAAGT+TGG - chr4.2:11249756-11249775 MS.gene030817:intron 35.0%
ATAATAGGGTTGCCATATAG+TGG - chr4.2:11247290-11247309 MS.gene030817:intron 35.0%
ATATATGGAAATCCACCACT+TGG - chr4.2:11249533-11249552 MS.gene030817:intron 35.0%
ATGCTACTGCTTGTTTAACA+TGG - chr4.2:11250949-11250968 MS.gene030817:intron 35.0%
ATGGCGTAAAAAACCTTTAC+AGG + chr4.2:11251053-11251072 None:intergenic 35.0%
ATTGTCTTCACTAATTTCGG+CGG - chr4.2:11247828-11247847 MS.gene030817:CDS 35.0%
ATTTACCAATCTAGTGACCA+AGG - chr4.2:11251317-11251336 MS.gene030817:intron 35.0%
CACCAATCCAAAATTTGAGA+TGG - chr4.2:11249099-11249118 MS.gene030817:intron 35.0%
CACTATGATTATCTAGCATC+TGG - chr4.2:11248182-11248201 MS.gene030817:CDS 35.0%
CATAGAACAAAATGTACCCA+TGG + chr4.2:11251720-11251739 None:intergenic 35.0%
CCATACAAAACCAACTTGTA+AGG + chr4.2:11249769-11249788 None:intergenic 35.0%
CCTACAAAACTAAGCTTGTA+AGG + chr4.2:11249070-11249089 None:intergenic 35.0%
CGTCATCAAAAAATAACCAG+TGG + chr4.2:11251621-11251640 None:intergenic 35.0%
CTATATTGGATGTTTCCAGA+TGG - chr4.2:11248792-11248811 MS.gene030817:intron 35.0%
CTTCAGAAAAGGTTGCAAAT+GGG - chr4.2:11250403-11250422 MS.gene030817:intron 35.0%
CTTCTTCCTCTTCTTTCATT+TGG - chr4.2:11247909-11247928 MS.gene030817:intron 35.0%
CTTGCATCTTTGCATAATCA+TGG + chr4.2:11248686-11248705 None:intergenic 35.0%
GAATCATAATTAGGCCTGTT+TGG + chr4.2:11247491-11247510 None:intergenic 35.0%
GATTATGCAAAGATGCAAGT+AGG - chr4.2:11248687-11248706 MS.gene030817:intron 35.0%
GCATATCACTGTTATACTGA+TGG - chr4.2:11249937-11249956 MS.gene030817:intron 35.0%
GGAAAAGATTATGATTCCAC+CGG + chr4.2:11249854-11249873 None:intergenic 35.0%
GTCTCACATTTGATGTGATA+TGG - chr4.2:11249006-11249025 MS.gene030817:intron 35.0%
GTGTTAGTTGAATATTCCTG+TGG + chr4.2:11251694-11251713 None:intergenic 35.0%
GTTTAAATACATGGAACAGC+TGG - chr4.2:11251432-11251451 MS.gene030817:intron 35.0%
TAAATGGGCATGAAAAACAG+AGG + chr4.2:11251302-11251321 None:intergenic 35.0%
TCATTGGACAGCACAATATA+TGG - chr4.2:11249518-11249537 MS.gene030817:intron 35.0%
TCTCAAGCGGTTTAAATACA+TGG - chr4.2:11251423-11251442 MS.gene030817:intron 35.0%
TGAAGACCAAATGAAAGAAG+AGG + chr4.2:11247918-11247937 None:intergenic 35.0%
TGGTCACTAGATTGGTAAAT+GGG + chr4.2:11251317-11251336 None:intergenic 35.0%
TGTTGTTGCAACAAATTTGG+AGG - chr4.2:11250533-11250552 MS.gene030817:intron 35.0%
TTCAAGAATGGTCATGCTAA+TGG - chr4.2:11250426-11250445 MS.gene030817:intron 35.0%
TTGGGTACACAAAAACTTTC+AGG - chr4.2:11250473-11250492 MS.gene030817:intron 35.0%
TTGGTCACTAGATTGGTAAA+TGG + chr4.2:11251318-11251337 None:intergenic 35.0%
TTTCAGCTTCAACATGTGTT+GGG + chr4.2:11249190-11249209 None:intergenic 35.0%
! ACAAATGAAGTGCCAATCAA+TGG + chr4.2:11251217-11251236 None:intergenic 35.0%
! CACCATCTCAAATTTTGGAT+TGG + chr4.2:11249104-11249123 None:intergenic 35.0%
! CGATTTAGAATGAATCGGAT+TGG + chr4.2:11246909-11246928 None:intergenic 35.0%
! TCTGACACCATCTCAAATTT+TGG + chr4.2:11249109-11249128 None:intergenic 35.0%
!! AAATTTGTGTTGACTCTGGT+GGG + chr4.2:11249706-11249725 None:intergenic 35.0%
!! ACCTGAAGGGTATTTATAAG+TGG - chr4.2:11249678-11249697 MS.gene030817:intron 35.0%
!! ATTTCGGTTGGTAGATCATT+AGG - chr4.2:11248840-11248859 MS.gene030817:intron 35.0%
!! CCTGAAGGGTATTTATAAGT+GGG - chr4.2:11249679-11249698 MS.gene030817:intron 35.0%
!! TAAATTTGTGTTGACTCTGG+TGG + chr4.2:11249707-11249726 None:intergenic 35.0%
!!! CCTTACAAGCTTAGTTTTGT+AGG - chr4.2:11249067-11249086 MS.gene030817:intron 35.0%
!!! CCTTACAAGTTGGTTTTGTA+TGG - chr4.2:11249766-11249785 MS.gene030817:intron 35.0%
!!! TGGTTTTGTATGGTTGAGTT+AGG - chr4.2:11249776-11249795 MS.gene030817:intron 35.0%
AAAACCGCATGCCTTGAATT+TGG + chr4.2:11248902-11248921 None:intergenic 40.0%
AAAATTACTACCCGCAGGAT+TGG + chr4.2:11249379-11249398 None:intergenic 40.0%
AAAGAAACCTCCTCACATTC+TGG - chr4.2:11251393-11251412 MS.gene030817:intron 40.0%
AAAGCTGAAAGTTCGAAGCA+AGG + chr4.2:11248738-11248757 None:intergenic 40.0%
AAGTCCTTGTGAGACTGTTT+GGG - chr4.2:11247120-11247139 MS.gene030817:CDS 40.0%
AATGTGAAACTGTGACAGCT+AGG - chr4.2:11250690-11250709 MS.gene030817:intron 40.0%
ACGGTCTAGATGTTCATTCA+TGG - chr4.2:11249596-11249615 MS.gene030817:intron 40.0%
AGAAGAGGAAGAAGAATGCA+AGG + chr4.2:11247903-11247922 None:intergenic 40.0%
AGATGAATGACCAGAATGTG+AGG + chr4.2:11251406-11251425 None:intergenic 40.0%
AGTTCGCAGAAGAAGAAAAC+CGG - chr4.2:11248416-11248435 MS.gene030817:intron 40.0%
ATGCAGCCAAATCTATTAGC+AGG + chr4.2:11249921-11249940 None:intergenic 40.0%
ATGTGAAACTGTGACAGCTA+GGG - chr4.2:11250691-11250710 MS.gene030817:intron 40.0%
ATTACTCAGCTTCAGCTCAA+GGG + chr4.2:11251494-11251513 None:intergenic 40.0%
ATTCAACTAACACCGACCAT+GGG - chr4.2:11251701-11251720 MS.gene030817:CDS 40.0%
CAAAGTAACGTTCTCCTTCA+GGG + chr4.2:11246807-11246826 None:intergenic 40.0%
CAACCTCTGTACAAATCGTT+TGG + chr4.2:11248453-11248472 None:intergenic 40.0%
CCAAAAGAAAGTTTGCACCT+TGG + chr4.2:11251337-11251356 None:intergenic 40.0%
CCCACTTATAAATACCCTTC+AGG + chr4.2:11249682-11249701 None:intergenic 40.0%
CCTTCAGAAAAGGTTGCAAA+TGG - chr4.2:11250402-11250421 MS.gene030817:intron 40.0%
CGGTCTAGATGTTCATTCAT+GGG - chr4.2:11249597-11249616 MS.gene030817:intron 40.0%
CTGACAACAAGTATTTCGGT+TGG - chr4.2:11248828-11248847 MS.gene030817:intron 40.0%
CTTTCAGCTTCAACATGTGT+TGG + chr4.2:11249191-11249210 None:intergenic 40.0%
CTTTCGTAGCTATATGCATC+AGG - chr4.2:11248490-11248509 MS.gene030817:intron 40.0%
GAACAAAATGTACCCATGGT+CGG + chr4.2:11251716-11251735 None:intergenic 40.0%
GAATACTCACCAATGAGACA+AGG - chr4.2:11250660-11250679 MS.gene030817:intron 40.0%
GAATGAACTTGTCGACATTC+TGG - chr4.2:11250335-11250354 MS.gene030817:intron 40.0%
GAGCCTGACAACAAGTATTT+CGG - chr4.2:11248824-11248843 MS.gene030817:intron 40.0%
GGTAAGACAACTTCTTGTAG+CGG + chr4.2:11251459-11251478 None:intergenic 40.0%
GTGTTGAAGGAGAATTTGTC+AGG - chr4.2:11248075-11248094 MS.gene030817:CDS 40.0%
TAACAAAACCTTAGGGGATG+CGG - chr4.2:11247660-11247679 MS.gene030817:intron 40.0%
TACTTGGTTTCTCGATTGGT+TGG - chr4.2:11250872-11250891 MS.gene030817:CDS 40.0%
TATTACTCAGCTTCAGCTCA+AGG + chr4.2:11251495-11251514 None:intergenic 40.0%
TATTCAACTAACACCGACCA+TGG - chr4.2:11251700-11251719 MS.gene030817:CDS 40.0%
TGATCCAAAGAACGTTTGCA+CGG + chr4.2:11251671-11251690 None:intergenic 40.0%
TTCTGGTCATTCATCTCAAG+CGG - chr4.2:11251410-11251429 MS.gene030817:intron 40.0%
TTGAATCCACTCAGGTCAAT+TGG - chr4.2:11249159-11249178 MS.gene030817:intron 40.0%
TTGTGAAAAGCCATAACCAC+TGG - chr4.2:11251602-11251621 MS.gene030817:intron 40.0%
TTTATCTGAATGCCTCACAG+TGG - chr4.2:11247951-11247970 MS.gene030817:intron 40.0%
TTTGCGGTAGTTGTTCATGT+TGG - chr4.2:11251547-11251566 MS.gene030817:intron 40.0%
! AAAAGTATAGTGCCTGCAGA+AGG + chr4.2:11247600-11247619 None:intergenic 40.0%
! ACTTGGTTTCTCGATTGGTT+GGG - chr4.2:11250873-11250892 MS.gene030817:CDS 40.0%
! AGTGGTTATGGCTTTTCACA+AGG + chr4.2:11251603-11251622 None:intergenic 40.0%
! ATCCTGCGGGTAGTAATTTT+TGG - chr4.2:11249379-11249398 MS.gene030817:intron 40.0%
! CCAAGGTGCAAACTTTCTTT+TGG - chr4.2:11251334-11251353 MS.gene030817:intron 40.0%
! CCATTTGCAACCTTTTCTGA+AGG + chr4.2:11250405-11250424 None:intergenic 40.0%
! CTGTTACTTGGTTTCTCGAT+TGG - chr4.2:11250868-11250887 MS.gene030817:CDS 40.0%
! GAACAACTGCTGGAGTATTA+TGG - chr4.2:11247634-11247653 MS.gene030817:intron 40.0%
! GTTGCAAATGGGTTCAAGAA+TGG - chr4.2:11250414-11250433 MS.gene030817:intron 40.0%
! GTTTTCTGAACGGGATTTCT+TGG - chr4.2:11251235-11251254 MS.gene030817:intron 40.0%
! TACTGTCGGTCTTCTCTTTT+CGG - chr4.2:11250280-11250299 MS.gene030817:intron 40.0%
! TCCTGCGGGTAGTAATTTTT+GGG - chr4.2:11249380-11249399 MS.gene030817:intron 40.0%
! TTTTCCCAAACAGTCTCACA+AGG + chr4.2:11247127-11247146 None:intergenic 40.0%
!! ACCATTTTGAGTCATGTGCT+TGG - chr4.2:11250919-11250938 MS.gene030817:intron 40.0%
!! CAACCGAAATACTTGTTGTC+AGG + chr4.2:11248830-11248849 None:intergenic 40.0%
!! CTCATTTTTCTACCTTCTGC+AGG - chr4.2:11247585-11247604 MS.gene030817:intron 40.0%
!!! CTTAGCTGACTTGTTTTCAC+AGG - chr4.2:11247702-11247721 MS.gene030817:CDS 40.0%
AACGTTCTCCTTCAGGGAAT+TGG + chr4.2:11246801-11246820 None:intergenic 45.0%
AACGTTCTTTGGATCACCAC+AGG - chr4.2:11251675-11251694 MS.gene030817:CDS 45.0%
AGGAAGAAGAATGCAAGGCT+GGG + chr4.2:11247898-11247917 None:intergenic 45.0%
AGGCTCACAACATTACCATC+TGG + chr4.2:11248810-11248829 None:intergenic 45.0%
ATGGGTTTGTATGCAGCGTT+TGG - chr4.2:11248643-11248662 MS.gene030817:intron 45.0%
ATTCAAAACAGGTGGCTCGA+CGG + chr4.2:11249145-11249164 None:intergenic 45.0%
CAAGTCCTTGTGAGACTGTT+TGG - chr4.2:11247119-11247138 MS.gene030817:CDS 45.0%
CACTTGGACTAAGTATGCCT+CGG - chr4.2:11249549-11249568 MS.gene030817:intron 45.0%
CCAAAGTAACGTTCTCCTTC+AGG + chr4.2:11246808-11246827 None:intergenic 45.0%
CCTGAAGGAGAACGTTACTT+TGG - chr4.2:11246805-11246824 MS.gene030817:CDS 45.0%
CTCCCAAACGATTTGTACAG+AGG - chr4.2:11248447-11248466 MS.gene030817:intron 45.0%
CTGACATAATGCCCATGGTT+GGG + chr4.2:11251580-11251599 None:intergenic 45.0%
GACACCAACACCTTCAGAAA+AGG - chr4.2:11250392-11250411 MS.gene030817:intron 45.0%
GATGGTTGTGAGTTGTGACA+TGG + chr4.2:11249875-11249894 None:intergenic 45.0%
GCCAAGCACATGACTCAAAA+TGG + chr4.2:11250923-11250942 None:intergenic 45.0%
GCTCAAGGGGAAAAACAACT+CGG + chr4.2:11251480-11251499 None:intergenic 45.0%
GGATAGCAAAAACCACTGTG+AGG + chr4.2:11247966-11247985 None:intergenic 45.0%
GTAGTTGTTCATGTTGGCAG+TGG - chr4.2:11251553-11251572 MS.gene030817:intron 45.0%
GTTGCAAGTTGTTGTGACCA+GGG - chr4.2:11250638-11250657 MS.gene030817:intron 45.0%
TCTCATTGGTGAGTATTCCC+TGG + chr4.2:11250658-11250677 None:intergenic 45.0%
TGAATGACCAGAATGTGAGG+AGG + chr4.2:11251403-11251422 None:intergenic 45.0%
TGGACCAAATTCAAGGCATG+CGG - chr4.2:11248895-11248914 MS.gene030817:intron 45.0%
TGTTGCAAGTTGTTGTGACC+AGG - chr4.2:11250637-11250656 MS.gene030817:intron 45.0%
TTACTCAGCTTCAGCTCAAG+GGG + chr4.2:11251493-11251512 None:intergenic 45.0%
TTCCACTGAGACGTTGAATG+CGG - chr4.2:11250787-11250806 MS.gene030817:intron 45.0%
TTGCAAGCACCTTGTCTCAT+TGG + chr4.2:11250672-11250691 None:intergenic 45.0%
TTGCACCTTGGTCACTAGAT+TGG + chr4.2:11251325-11251344 None:intergenic 45.0%
TTGCCATATAGTGGCCATAG+CGG - chr4.2:11247299-11247318 MS.gene030817:intron 45.0%
TTGTGGCATCAGCTGTTACT+TGG - chr4.2:11250856-11250875 MS.gene030817:CDS 45.0%
! ACATCTAGACCGTAACTTGC+AGG + chr4.2:11249589-11249608 None:intergenic 45.0%
! ATAGTGTTACAGTGCCGCTA+TGG + chr4.2:11247316-11247335 None:intergenic 45.0%
! ATTTTCTTCCGCATCCCCTA+AGG + chr4.2:11247671-11247690 None:intergenic 45.0%
! CTGAGTGGATTCAAAACAGG+TGG + chr4.2:11249153-11249172 None:intergenic 45.0%
! GACCTGAGTGGATTCAAAAC+AGG + chr4.2:11249156-11249175 None:intergenic 45.0%
! TGTCGACATTCTGGAGAAAG+AGG - chr4.2:11250344-11250363 MS.gene030817:intron 45.0%
!! CACCTGTTTTGAATCCACTC+AGG - chr4.2:11249151-11249170 MS.gene030817:intron 45.0%
!! GCAACCTTTTCTGAAGGTGT+TGG + chr4.2:11250399-11250418 None:intergenic 45.0%
!! GTCAGGTTGGACCAAATTCA+AGG - chr4.2:11248888-11248907 MS.gene030817:intron 45.0%
!! TTTTCTGTGACAAGTGCTGC+AGG - chr4.2:11250819-11250838 MS.gene030817:CDS 45.0%
!!! GTGGTTTGCCTTTGTTTTGC+AGG + chr4.2:11249473-11249492 None:intergenic 45.0%
!!! ATAATTATTTTTAGATAATA+GGG - chr4.2:11247276-11247295 MS.gene030817:intron 5.0%
!!! TATAATTATTTTTAGATAAT+AGG - chr4.2:11247275-11247294 MS.gene030817:intron 5.0%
AGAATGCAAGGCTGGGAAGT+CGG + chr4.2:11247891-11247910 None:intergenic 50.0%
CAAGGCTGACATAATGCCCA+TGG + chr4.2:11251585-11251604 None:intergenic 50.0%
CGAGGCATACTTAGTCCAAG+TGG + chr4.2:11249551-11249570 None:intergenic 50.0%
GAGGAAGAAGAATGCAAGGC+TGG + chr4.2:11247899-11247918 None:intergenic 50.0%
GATGTTCATTCATGGGCGTG+AGG - chr4.2:11249604-11249623 MS.gene030817:intron 50.0%
GCCCAAAAATTACTACCCGC+AGG + chr4.2:11249384-11249403 None:intergenic 50.0%
GCTGACATAATGCCCATGGT+TGG + chr4.2:11251581-11251600 None:intergenic 50.0%
GCTGATCCAATTGACCTGAG+TGG + chr4.2:11249168-11249187 None:intergenic 50.0%
GGCATACTTAGTCCAAGTGG+TGG + chr4.2:11249548-11249567 None:intergenic 50.0%
GGCGGCTATGATTCATGCTT+TGG - chr4.2:11247846-11247865 MS.gene030817:CDS 50.0%
TAAGTATGCCTCGGTGGCTT+GGG - chr4.2:11249558-11249577 MS.gene030817:intron 50.0%
TCCAAAGAACGTTTGCACGG+CGG + chr4.2:11251668-11251687 None:intergenic 50.0%
TCCAGCAGTTGTTCCCGAAA+TGG + chr4.2:11247628-11247647 None:intergenic 50.0%
TCCATTTCGGGAACAACTGC+TGG - chr4.2:11247624-11247643 MS.gene030817:intron 50.0%
TCGTTTGGGAGCAATGACAC+CGG + chr4.2:11248438-11248457 None:intergenic 50.0%
TGGGCTGATCCTGCAAGTTA+CGG - chr4.2:11249577-11249596 MS.gene030817:intron 50.0%
TTGGACTAAGTATGCCTCGG+TGG - chr4.2:11249552-11249571 MS.gene030817:intron 50.0%
! CATTCTGGAGAAAGAGGCTC+AGG - chr4.2:11250350-11250369 MS.gene030817:intron 50.0%
! GTCGGTCTTCTCTTTTCGGT+AGG - chr4.2:11250284-11250303 MS.gene030817:intron 50.0%
!! TCCAAGCTTGAGAAGGCACT+CGG - chr4.2:11246772-11246791 MS.gene030817:CDS 50.0%
!! TCTGAAGGTGTTGGTGTCTC+TGG + chr4.2:11250390-11250409 None:intergenic 50.0%
!! TGCAAAGGGTACCAATCCTG+CGG - chr4.2:11249365-11249384 MS.gene030817:intron 50.0%
!! TGCTGGTTCCAAGCTTGAGA+AGG - chr4.2:11246765-11246784 MS.gene030817:CDS 50.0%
!! TTCTATGAGAGCATTGGGCC+CGG - chr4.2:11251733-11251752 MS.gene030817:CDS 50.0%
ACCGAGTGCCTTCTCAAGCT+TGG + chr4.2:11246776-11246795 None:intergenic 55.0%
CACTGAGACGTTGAATGCGG+AGG - chr4.2:11250790-11250809 MS.gene030817:intron 55.0%
CTAAGTATGCCTCGGTGGCT+TGG - chr4.2:11249557-11249576 MS.gene030817:intron 55.0%
CTCCGCATTCAACGTCTCAG+TGG + chr4.2:11250792-11250811 None:intergenic 55.0%
CTCGGTGACCAATTCCCTGA+AGG - chr4.2:11246790-11246809 MS.gene030817:CDS 55.0%
TCCGCCGTGCAAACGTTCTT+TGG - chr4.2:11251664-11251683 MS.gene030817:CDS 55.0%
TGGCTCGACGGATCTTAGAC+AGG + chr4.2:11249133-11249152 None:intergenic 55.0%
TTGGCAGTGGTCCCAACCAT+GGG - chr4.2:11251566-11251585 MS.gene030817:intron 55.0%
! AGGCATGCGGTTTTCACCCT+CGG - chr4.2:11248908-11248927 MS.gene030817:intron 55.0%
! GTGCCGCTATGGCCACTATA+TGG + chr4.2:11247305-11247324 None:intergenic 55.0%
!! GCAAAGGGTACCAATCCTGC+GGG - chr4.2:11249366-11249385 MS.gene030817:intron 55.0%
!! TGAGGAGTGTGTGTTGGCTC+TGG - chr4.2:11249622-11249641 MS.gene030817:intron 55.0%
GTTGGCAGTGGTCCCAACCA+TGG - chr4.2:11251565-11251584 MS.gene030817:intron 60.0%
! TGGGCGTGAGGAGTGTGTGT+TGG - chr4.2:11249616-11249635 MS.gene030817:intron 60.0%
AGGATCAGCCCAAGCCACCG+AGG + chr4.2:11249569-11249588 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 11246757 11251768 11246757 ID=MS.gene030817
chr4.2 mRNA 11246757 11251768 11246757 ID=MS.gene030817.t1;Parent=MS.gene030817
chr4.2 exon 11251652 11251768 11251652 ID=MS.gene030817.t1.exon1;Parent=MS.gene030817.t1
chr4.2 CDS 11251652 11251768 11251652 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
chr4.2 exon 11250802 11250918 11250802 ID=MS.gene030817.t1.exon2;Parent=MS.gene030817.t1
chr4.2 CDS 11250802 11250918 11250802 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
chr4.2 exon 11250014 11250112 11250014 ID=MS.gene030817.t1.exon3;Parent=MS.gene030817.t1
chr4.2 CDS 11250014 11250112 11250014 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
chr4.2 exon 11248031 11248219 11248031 ID=MS.gene030817.t1.exon4;Parent=MS.gene030817.t1
chr4.2 CDS 11248031 11248219 11248031 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
chr4.2 exon 11247685 11247866 11247685 ID=MS.gene030817.t1.exon5;Parent=MS.gene030817.t1
chr4.2 CDS 11247685 11247866 11247685 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
chr4.2 exon 11246757 11247162 11246757 ID=MS.gene030817.t1.exon6;Parent=MS.gene030817.t1
chr4.2 CDS 11246757 11247162 11246757 ID=cds.MS.gene030817.t1;Parent=MS.gene030817.t1
Gene Sequence

>MS.gene030817

ATGGGTGCTGCTGGTTCCAAGCTTGAGAAGGCACTCGGTGACCAATTCCCTGAAGGAGAACGTTACTTTGGTCTTGAGAATTTCGGCAATACTTGTTATTGTAACAGCGTTTTACAGGTTTTAATCGATTCTTTTTAATCTTCTATTTTCCAATCCGATTCATTCTAAATCGTAGTGAATTTGCTTTCTTTGATTGTTTATTCATGATTCATACACATCGTTAATTGTAACCATTTTTTTCTTTTCTGAATTTATGTTGACTTGTCCAAACAAATTTTTGAAGAGTTTAATTGTTGAATAATCTATAAGGATTTTTGTTATTTACCTGTTTGGATTTGATTATTTGAGTTTATCTAATGACACAAGTCCTTGTGAGACTGTTTGGGAAAACTTATTAAAGCAATTTATGATATGTTTATAAGTTGTTTTCACTTATTTTCATAAGCTCTTCAAGATAACTTCTATAAACAGCTTATATGTTATATGTAAACAGTTTTAATTTAATCTATTTTTTGTTATATAATTATTTTTAGATAATAGGGTTGCCATATAGTGGCCATAGCGGCACTGTAACACTATAGAGTAGCCGAATTTAGACTAATCGCTATAGTGGCTATTGCAGTTGTGTTGTAGCATAGTAGAATTTGAACAAACCGTTGTTTTTTGTGATTTGCAATCGACAACACTGCACAGAATCGCTTATATGACAATCACTTAATTAAGTTGTTCTTCCAAACAGGCCTAATTATGATTCTAAGTATTAAGTTTGAAGATGGGTTTGTTTGTTATATTTTTGTGGAGATTTCTGGGCTGTTCAGCATCATGTTACTCATTTTTCTACCTTCTGCAGGCACTATACTTTTGTGTTCCATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAACCTTAGGGGATGCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTGTTTTCACAGGTAATCAATTTGTAGTTTGGAAATTTTGTGCATTACATGGATGACGCCTCTATGCTTTTTCATATTTGATTGACTGAAGCATGATTCACAGTTTGATAGTTTGCATTGTCTTCACTAATTTCGGCGGCTATGATTCATGCTTTGGACTCTTGTCAAAGATGCTGCCGACTTCCCAGCCTTGCATTCTTCTTCCTCTTCTTTCATTTGGTCTTCAAACAAGTGTTTTTTTTATCTGAATGCCTCACAGTGGTTTTTGCTATCCTTAGTTTTGGTTTTAAAACCATATTTTCTTTAATAACATATCCTACCAGATTTTCTTATTTTTTATTTCCTTTTTCTGTTATTGTTTGTGTGTTGAAGGAGAATTTGTCAGGCATGAGACAAACAAGTTGAGAATAAAAGATAGGGTTACTGAATAAAAATGTAAATAAGTCTTTTGTAACTGATCATAGAAGCTGCACTATGATTATCTAGCATCTGGAAAGTATGAAAATTAGTCGTTGCAAATTTTAAAATCAGCGTGATACATAAGACATCCAACAATAGAGTTTACTTTGTGAGGTTTGTGAACCTGAAACAAATCATTTGTATAAATCCTATCAAGTATCAACTATATCTTGATGTCATTTACATGCTTAGTTATGTCTTTCTTGATCCTGAATTCAACATATTTATTTCTGTTGGTATAGATAAGTTCGCAGAAGAAGAAAACCGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTTCGTAGCTATATGCATCAGGTATGTACTCTACCATAAGTGTTAAGAATAAGTTCCTGTACATCGAATTGTTATTCATGAGTTCTGTAAAAACTGTTGACAGTGACATTTAGATTATAAAGTATAAATATAAATAAGACATTAGTTTGGATATGGGTTTGTATGCAGCGTTTGGCTATGTTACTTGTCACTCCATGATTATGCAAAGATGCAAGTAGGTGTTGCTCCATGTTTATTTACATTTCCTTGCTTCGAACTTTCAGCTTTTCTGCACATGAATCCTAGTTAGAGATGCTATTATCTATATTGGATGTTTCCAGATGGTAATGTTGTGAGCCTGACAACAAGTATTTCGGTTGGTAGATCATTAGGCAGACCAGTGTTACTTTTTTATTCTGTCAGGTTGGACCAAATTCAAGGCATGCGGTTTTCACCCTCGGAATTGTTACAAGCTTTTTTTAATTCACAAAAACATTTAAGGTTGTTAGCATGTTAACATTTACTTTATGTTGACAGTCTCACATTTGATGTGATATGGCCCCTGAAAAATTATTTATAAGTGGGAGGCATCTCTCACCTTACAAGCTTAGTTTTGTAGGGTGAATTAACACCAATCCAAAATTTGAGATGGTGTCAGAGCCTGTCTAAGATCCGTCGAGCCACCTGTTTTGAATCCACTCAGGTCAATTGGATCAGCCCAACACATGTTGAAGCTGAAAGCAAATTCTAAGATGAGGCCTTTAAATGCTTAAGTTAAAAATATAATAATTTGCAACAAAAAAAATATAAAATATACATCACTATGTATAAAATAAAAAAGTCAATCAGATATTTATTTGTGATGCAGTGGTTTAGCTTGCTTGTTTTTCTCAATTGCAAAGGGTACCAATCCTGCGGGTAGTAATTTTTGGGCATTATTTTTTGTAAAGAAATACGATAATGCAGAAAAGGCTTATCCAAGAATTGAATGTAAGTTCTACCTGCAAAACAAAGGCAAACCACTGTGTCATTATAAACATTTGCAATATCATTGGACAGCACAATATATGGAAATCCACCACTTGGACTAAGTATGCCTCGGTGGCTTGGGCTGATCCTGCAAGTTACGGTCTAGATGTTCATTCATGGGCGTGAGGAGTGTGTGTTGGCTCTGGTGAGAGTCCCACAAGAGTCAACACAAATTTATAACCTGAAGGGTATTTATAAGTGGGTCCCACCAGAGTCAACACAAATTTATAACATGAAAAAGTAGTTATAAGTGGGAGACATTCTTCACCTTACAAGTTGGTTTTGTATGGTTGAGTTAGGTCCGACCAAATTAAGACTTTAGATATGATCTTTATTAACTATTATTATATATCCGGTGGAATCATAATCTTTTCCATGTCACAACTCACAACCATCCCTTATCACTTTACATTATTAAGCCTGCTAATAGATTTGGCTGCATATCACTGTTATACTGATGGTGATACCAATTAGTTTTTTTTTCTTTTCTTTTCCTTTTCATTCTATGATGAAATAATTCTGTAACTGATGTTGGGTGTCTGTTTAGCAGAAATTACAACAATTTGTTACTTGCAGATGAGATTGTAGTTTACCATGAATTTTCACTGTAGCATACAAGTTTATTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTGATTGTTTATAGTCTGTTAATTTTAATGTATCATTGGTTGCACAGTACCTCATATTTTGTCTAGTTTTTAACTAATACAACAATGTTACTGTCGGTCTTCTCTTTTCGGTAGGATGCCCACGAATTCTTGAACTTTTTACTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAGACTGATCCAGAGACACCAACACCTTCAGAAAAGGTTGCAAATGGGTTCAAGAATGGTCATGCTAATGGACCTAAGAAAGAGCCTTTAATTACTTGGGTACACAAAAACTTTCAGGTGACCTGCTTTGCCAATTTTTTTTTGTCATTTTTTTTTGTTGTTGCAACAAATTTGGAGGAAGTATAAATTGTGAACTTTGTAATGGATACAGTTTGTTGATCACAAAATTTAGATTTATATCTATATTGTGGAATTTCATTGTTGCAAGTTGTTGTGACCAGGGAATACTCACCAATGAGACAAGGTGCTTGCAATGTGAAACTGTGACAGCTAGGGACGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGTTTGAAAAATTTCAGTTCCACTGAGACGTTGAATGCGGAGGACAAATTTTTCTGTGACAAGTGCTGCAGGTATATGCTTTTATATTGTGGCATCAGCTGTTACTTGGTTTCTCGATTGGTTGGGAAAATGTAAACTGTCTGTTGTCAACCATTTTGAGTCATGTGCTTGGCTAAACGATGCTACTGCTTGTTTAACATGGATTTCAATTGATGCATTAGACTTTATCAAAAACCAAATTTTCAGATATCTGTTCAGATCTAGATCATTTTAGTAGTTTCCTGTAAAGGTTTTTTACGCCATTGTTTTCTACTTTTAACTGGAGAGGGAAATAAAATAAATGTGGTGACTCATATATGTCAAATTGTTTGAATATCATGTATATTTTTGGACATTTTATCTCCTTTTCATTTTCAACAAGCAAACCGTAACATGTTTGTTTTTCCATTGATTGGCACTTCATTTGTTTTCTGAACGGGATTTCTTGGTCATGTTAGTTCAGTGTGTACAAATATATATGCACTCTTTTCCTCTGTTTTTCATGCCCATTTACCAATCTAGTGACCAAGGTGCAAACTTTCTTTTGGTATTAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCTCCTCACATTCTGGTCATTCATCTCAAGCGGTTTAAATACATGGAACAGCTGGGCCGCTACAAGAAGTTGTCTTACCGAGTTGTTTTTCCCCTTGAGCTGAAGCTGAGTAATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCGGTAGTTGTTCATGTTGGCAGTGGTCCCAACCATGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCCGCCGTGCAAACGTTCTTTGGATCACCACAGGAATATTCAACTAACACCGACCATGGGTACATTTTGTTCTATGAGAGCATTGGGCCCGGTAACAGTAACTAG
Protein sequence

>MS.gene030817.t1

MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTLGDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPETPTPSEKVANGFKNGHANGPKKEPLITWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSPQEYSTNTDHGYILFYESIGPGNSN