Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031647.t1 | XP_003607540.2 | 99.5 | 666 | 2 | 1 | 1 | 666 | 1 | 665 | 0.00E+00 | 1255 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031647.t1 | O25225 | 46.3 | 609 | 310 | 6 | 58 | 662 | 4 | 599 | 2.6e-150 | 533.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031647.t1 | G7JUZ7 | 99.5 | 666 | 2 | 1 | 1 | 666 | 1 | 665 | 0.0e+00 | 1255.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene031647 | MS.gene89744 | PPI |
MS.gene031647 | MS.gene018869 | PPI |
MS.gene031647 | MS.gene040952 | PPI |
MS.gene031647 | MS.gene061606 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031647.t1 | MTR_4g079360 | 99.550 | 666 | 2 | 1 | 1 | 666 | 1 | 665 | 0.0 | 1353 |
MS.gene031647.t1 | MTR_1g052535 | 42.379 | 597 | 326 | 7 | 58 | 649 | 82 | 665 | 6.64e-152 | 455 |
MS.gene031647.t1 | MTR_1g052535 | 43.627 | 408 | 214 | 5 | 58 | 460 | 82 | 478 | 4.70e-104 | 325 |
MS.gene031647.t1 | MTR_3g097250 | 28.351 | 582 | 320 | 23 | 8 | 535 | 18 | 556 | 2.07e-35 | 142 |
MS.gene031647.t1 | MTR_7g009740 | 29.836 | 305 | 162 | 6 | 7 | 293 | 26 | 296 | 5.76e-28 | 120 |
MS.gene031647.t1 | MTR_4g119340 | 41.045 | 134 | 73 | 1 | 54 | 181 | 10 | 143 | 5.78e-24 | 108 |
MS.gene031647.t1 | MTR_7g044770 | 36.559 | 186 | 104 | 4 | 8 | 181 | 11 | 194 | 7.68e-24 | 107 |
MS.gene031647.t1 | MTR_7g094460 | 29.180 | 305 | 182 | 10 | 4 | 296 | 17 | 299 | 2.25e-21 | 97.8 |
MS.gene031647.t1 | MTR_2g069050 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.10e-20 | 97.4 |
MS.gene031647.t1 | MTR_1g048000 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.13e-20 | 97.4 |
MS.gene031647.t1 | MTR_2g069310 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.22e-20 | 97.4 |
MS.gene031647.t1 | MTR_2g021300 | 29.323 | 266 | 169 | 8 | 37 | 293 | 28 | 283 | 5.27e-20 | 93.6 |
MS.gene031647.t1 | MTR_2g069320 | 40.136 | 147 | 66 | 4 | 56 | 181 | 17 | 162 | 5.91e-20 | 95.1 |
MS.gene031647.t1 | MTR_4g101750 | 40.310 | 129 | 71 | 2 | 59 | 181 | 93 | 221 | 7.79e-19 | 91.7 |
MS.gene031647.t1 | MTR_4g101750 | 40.310 | 129 | 71 | 2 | 59 | 181 | 93 | 221 | 8.19e-19 | 91.3 |
MS.gene031647.t1 | MTR_2g020660 | 35.185 | 162 | 92 | 3 | 34 | 182 | 27 | 188 | 2.46e-18 | 89.7 |
MS.gene031647.t1 | MTR_3g076660 | 28.906 | 256 | 162 | 7 | 60 | 301 | 94 | 343 | 1.85e-17 | 86.3 |
MS.gene031647.t1 | MTR_4g116430 | 35.714 | 140 | 78 | 2 | 54 | 181 | 135 | 274 | 3.09e-17 | 86.7 |
MS.gene031647.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 49 | 293 | 266 | 537 | 5.75e-13 | 72.8 |
MS.gene031647.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 49 | 293 | 339 | 610 | 8.88e-13 | 72.0 |
MS.gene031647.t1 | MTR_1g085410 | 26.515 | 264 | 152 | 8 | 60 | 290 | 9 | 263 | 3.34e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031647.t1 | AT2G31060 | 81.287 | 668 | 122 | 2 | 1 | 666 | 1 | 667 | 0.0 | 1097 |
MS.gene031647.t1 | AT2G31060 | 80.804 | 672 | 122 | 3 | 1 | 666 | 1 | 671 | 0.0 | 1092 |
MS.gene031647.t1 | AT2G31060 | 82.543 | 527 | 92 | 0 | 140 | 666 | 1 | 527 | 0.0 | 911 |
MS.gene031647.t1 | AT5G13650 | 42.550 | 651 | 340 | 11 | 28 | 666 | 47 | 675 | 2.25e-158 | 472 |
MS.gene031647.t1 | AT5G13650 | 42.638 | 652 | 339 | 12 | 28 | 666 | 47 | 676 | 1.70e-157 | 470 |
MS.gene031647.t1 | AT5G08650 | 29.074 | 540 | 297 | 22 | 37 | 535 | 65 | 559 | 3.80e-39 | 153 |
MS.gene031647.t1 | AT5G08650 | 29.367 | 521 | 282 | 22 | 56 | 535 | 84 | 559 | 1.50e-38 | 152 |
MS.gene031647.t1 | AT5G39900 | 32.103 | 271 | 147 | 7 | 36 | 293 | 43 | 289 | 2.75e-29 | 124 |
MS.gene031647.t1 | AT2G45030 | 37.037 | 189 | 107 | 4 | 4 | 181 | 10 | 197 | 3.08e-26 | 115 |
MS.gene031647.t1 | AT1G45332 | 37.037 | 189 | 107 | 4 | 4 | 181 | 10 | 197 | 1.15e-25 | 113 |
MS.gene031647.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 57 | 181 | 8 | 138 | 2.24e-25 | 112 |
MS.gene031647.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 57 | 181 | 8 | 138 | 2.24e-25 | 112 |
MS.gene031647.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 57 | 181 | 8 | 138 | 2.24e-25 | 112 |
MS.gene031647.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.71e-20 | 97.1 |
MS.gene031647.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.71e-20 | 97.1 |
MS.gene031647.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 56 | 181 | 17 | 162 | 1.71e-20 | 97.1 |
MS.gene031647.t1 | AT3G12915 | 40.136 | 147 | 66 | 4 | 56 | 181 | 17 | 162 | 4.34e-20 | 95.5 |
MS.gene031647.t1 | AT4G20360 | 30.620 | 258 | 155 | 9 | 60 | 301 | 81 | 330 | 5.50e-20 | 94.0 |
MS.gene031647.t1 | AT4G20360 | 30.620 | 258 | 155 | 9 | 60 | 301 | 81 | 330 | 5.50e-20 | 94.0 |
MS.gene031647.t1 | AT1G62750 | 41.085 | 129 | 70 | 2 | 59 | 181 | 97 | 225 | 7.08e-19 | 91.7 |
MS.gene031647.t1 | AT4G02930 | 27.368 | 285 | 183 | 7 | 60 | 336 | 69 | 337 | 3.40e-17 | 85.1 |
MS.gene031647.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 54 | 181 | 134 | 273 | 3.91e-17 | 86.3 |
MS.gene031647.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 54 | 181 | 134 | 273 | 3.91e-17 | 86.3 |
MS.gene031647.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 54 | 181 | 134 | 273 | 3.91e-17 | 86.3 |
MS.gene031647.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 54 | 181 | 120 | 259 | 7.27e-16 | 82.4 |
MS.gene031647.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 54 | 181 | 120 | 259 | 7.27e-16 | 82.4 |
MS.gene031647.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 60 | 302 | 317 | 586 | 5.68e-13 | 72.8 |
MS.gene031647.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 60 | 302 | 312 | 581 | 6.17e-13 | 72.8 |
MS.gene031647.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 60 | 302 | 241 | 510 | 6.71e-13 | 72.4 |
MS.gene031647.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 60 | 302 | 242 | 511 | 6.72e-13 | 72.4 |
MS.gene031647.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 60 | 302 | 242 | 511 | 6.72e-13 | 72.4 |
Find 187 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACTGGACGCGTGCATTC+TGG | 0.099819 | 4.3:+29787179 | MS.gene031647:CDS |
ATGGAGAAGGACAATTATTT+TGG | 0.138242 | 4.3:+29787149 | MS.gene031647:CDS |
CTTGCAAAAGCCTTAAAGTA+TGG | 0.191909 | 4.3:+29784229 | MS.gene031647:CDS |
CATGCCTGGAAGCACATTTA+TGG | 0.229177 | 4.3:-29788848 | None:intergenic |
TTGCAAGAACAAACTTAGTT+TGG | 0.248466 | 4.3:-29784213 | None:intergenic |
AGGTCGCAACCCATACTTTA+AGG | 0.256662 | 4.3:-29784239 | None:intergenic |
TGACTGGACGCGTGCATTCT+GGG | 0.284327 | 4.3:+29787180 | MS.gene031647:CDS |
GAGCAGGTGTCAGTGGGTTT+TGG | 0.285168 | 4.3:+29792833 | MS.gene031647:intron |
TTTAAATACTAACCAGCATT+TGG | 0.301910 | 4.3:-29786750 | None:intergenic |
GGTGATATAATTTCAATTGC+TGG | 0.318576 | 4.3:+29787733 | MS.gene031647:CDS |
TATGGTTGAGGGAGCAGTTT+TGG | 0.325847 | 4.3:+29784162 | MS.gene031647:CDS |
CCAACAATATCTATGACTTT+TGG | 0.334446 | 4.3:+29788521 | MS.gene031647:CDS |
CAAGGTATTTCTTCCGTAAC+CGG | 0.334914 | 4.3:-29796015 | None:intergenic |
TTCCGTAACCGGATTGCCTT+TGG | 0.337094 | 4.3:-29796004 | None:intergenic |
TCGATTGTAACTTCTTCTAT+TGG | 0.338758 | 4.3:-29789919 | None:intergenic |
TGCATTACCGACAGTTGAAT+TGG | 0.343501 | 4.3:+29788493 | MS.gene031647:CDS |
ATTTACCTCACCACCGAAAT+CGG | 0.345616 | 4.3:-29783357 | None:intergenic |
CATCAATGTTTGCATTTGGT+GGG | 0.355337 | 4.3:-29786720 | None:intergenic |
ACTCCTGGTCACGCCGATTT+CGG | 0.357025 | 4.3:+29783344 | MS.gene031647:CDS |
TCAGAAACTCACATGACTTT+AGG | 0.365612 | 4.3:-29789058 | None:intergenic |
GGGTTGTTCGTGTTGGTGAC+AGG | 0.367855 | 4.3:+29787201 | MS.gene031647:CDS |
TGGTATCACTATCTCTTCTA+AGG | 0.367912 | 4.3:+29783193 | MS.gene031647:CDS |
TCAGAAACATTTGAAGTTCA+AGG | 0.369709 | 4.3:+29788871 | MS.gene031647:CDS |
AGCAGTGAGACACGTGGAAC+TGG | 0.379332 | 4.3:+29792252 | MS.gene031647:CDS |
TACCATCACGACCAGCTAAT+GGG | 0.380573 | 4.3:-29788556 | None:intergenic |
ACCGGCTGCTTCGTCAGTGC+GGG | 0.383562 | 4.3:+29783117 | MS.gene031647:CDS |
CAAAAGTCATAGATATTGTT+GGG | 0.383621 | 4.3:-29788520 | None:intergenic |
TGCAAGAACAAACTTAGTTT+GGG | 0.386224 | 4.3:-29784212 | None:intergenic |
GTTTGATCTATTTGCGAACC+TGG | 0.390041 | 4.3:+29786463 | MS.gene031647:CDS |
GCATCAATGTTTGCATTTGG+TGG | 0.397817 | 4.3:-29786721 | None:intergenic |
CTTGCCATAAATGTGCTTCC+AGG | 0.401944 | 4.3:+29788844 | MS.gene031647:CDS |
TTAGCAGAAGCATAAAGAAC+AGG | 0.405768 | 4.3:-29786604 | None:intergenic |
GGACTACGTAACAAAGATTC+TGG | 0.405995 | 4.3:+29787230 | MS.gene031647:CDS |
GAAAGATAATGAGTTGAATA+TGG | 0.413770 | 4.3:+29783316 | MS.gene031647:CDS |
TTAGCTCTTACCTCCATTCC+AGG | 0.415972 | 4.3:-29792914 | None:intergenic |
CTTAATTGAGCAGGTGTCAG+TGG | 0.420773 | 4.3:+29792826 | MS.gene031647:intron |
ATGACACTTGAAGAAGCTAT+AGG | 0.422606 | 4.3:+29794778 | MS.gene031647:CDS |
TCAATGTTTGCATTTGGTGG+GGG | 0.425685 | 4.3:-29786718 | None:intergenic |
ACGCTCACGTTCAAGCGAAA+TGG | 0.428414 | 4.3:-29783171 | None:intergenic |
GTAAGTTGTTTGGCCCTCAC+TGG | 0.431349 | 4.3:-29793552 | None:intergenic |
CTTTATGCTTCTGCTAAAGA+AGG | 0.432930 | 4.3:+29786610 | MS.gene031647:CDS |
GCGTACATTTGTAAGTTGTT+TGG | 0.436322 | 4.3:-29793562 | None:intergenic |
TTCAGGTTACTTCAATTTCG+TGG | 0.436713 | 4.3:+29783294 | MS.gene031647:intron |
ACTTTGTTTAAAAGAAGAAT+AGG | 0.443752 | 4.3:-29784259 | None:intergenic |
GGTGCATCAATGTTTGCATT+TGG | 0.447087 | 4.3:-29786724 | None:intergenic |
TGACACTTGAAGAAGCTATA+GGG | 0.447678 | 4.3:+29794779 | MS.gene031647:CDS |
TGATGCCGGGGAAGGTCCAC+TGG | 0.448072 | 4.3:+29784189 | MS.gene031647:CDS |
ATCAATGTTTGCATTTGGTG+GGG | 0.448811 | 4.3:-29786719 | None:intergenic |
CTCCAAAGGCAATCCGGTTA+CGG | 0.450717 | 4.3:+29796002 | MS.gene031647:CDS |
TTGGGCCAGTGGACCTTCCC+CGG | 0.450937 | 4.3:-29784194 | None:intergenic |
CCAAAAGTCATAGATATTGT+TGG | 0.455246 | 4.3:-29788521 | None:intergenic |
GAGCGATGACGGCGACGTTA+CGG | 0.458253 | 4.3:-29783064 | None:intergenic |
GTACCATCACGACCAGCTAA+TGG | 0.460981 | 4.3:-29788557 | None:intergenic |
GGCATCGGCAGGAGGATCCT+TGG | 0.465760 | 4.3:-29786653 | None:intergenic |
ATCGAGTGATGCGGCGGGAG+AGG | 0.467137 | 4.3:-29783030 | None:intergenic |
TGATGCACCTTTCCAAATGC+TGG | 0.469645 | 4.3:+29786738 | MS.gene031647:CDS |
ACATTTGAAGTTCAAGGAAG+AGG | 0.470958 | 4.3:+29788877 | MS.gene031647:CDS |
CGAGAGGGAGATTGAGTGAG+AGG | 0.471057 | 4.3:-29782957 | None:intergenic |
TCAAATGTTTCTGACATGCC+TGG | 0.471398 | 4.3:-29788862 | None:intergenic |
TAGAGTGAACGGAGAAGAAA+AGG | 0.472682 | 4.3:-29782900 | None:intergenic |
AGAGGAGGTGGCAGCAGCGG+CGG | 0.477881 | 4.3:-29783012 | None:intergenic |
CGTGTTGGTGACAGGGTTCA+CGG | 0.478811 | 4.3:+29787209 | MS.gene031647:CDS |
TTTGCGAACCTGGGTGCTAC+AGG | 0.479237 | 4.3:+29786473 | MS.gene031647:CDS |
TGATGCGGCGGGAGAGGAGG+TGG | 0.479495 | 4.3:-29783024 | None:intergenic |
GCATATGATGGAATGATTGT+TGG | 0.485181 | 4.3:+29793418 | MS.gene031647:CDS |
TTGAGTGAGAGGTGAAGAAG+AGG | 0.485805 | 4.3:-29782946 | None:intergenic |
TGTTTGTTCAGGGGCCTGGT+TGG | 0.487257 | 4.3:+29792213 | MS.gene031647:intron |
TTGCAAAAGCCTTAAAGTAT+GGG | 0.487539 | 4.3:+29784230 | MS.gene031647:CDS |
GTAACTGATTGTGCTGGAGC+TGG | 0.492213 | 4.3:+29787712 | MS.gene031647:CDS |
GGTCCTGTCGCGGGAACTGT+CGG | 0.492601 | 4.3:+29790089 | MS.gene031647:CDS |
TTTACTTCATGTAGTTACTC+AGG | 0.497053 | 4.3:+29786412 | MS.gene031647:intron |
AAGCACATTTATGGCAAGGT+TGG | 0.498295 | 4.3:-29788839 | None:intergenic |
GCGACGTTACGGAGGCGGTT+AGG | 0.499199 | 4.3:-29783053 | None:intergenic |
CATTCTGGGGTTGTTCGTGT+TGG | 0.502367 | 4.3:+29787194 | MS.gene031647:CDS |
ATTGAGAATATGAGGCGTGA+GGG | 0.504218 | 4.3:+29789013 | MS.gene031647:CDS |
GTGACCGTATGGCCGATTGA+TGG | 0.508062 | 4.3:-29787766 | None:intergenic |
GGTTGTTCGTGTTGGTGACA+GGG | 0.508285 | 4.3:+29787202 | MS.gene031647:CDS |
TGCTTCTGCTAAAGAAGGAT+GGG | 0.508296 | 4.3:+29786615 | MS.gene031647:CDS |
ACTGACATGGGTCCTGTCGC+GGG | 0.511743 | 4.3:+29790080 | MS.gene031647:CDS |
CAATGTGAGGAAAGGAGTAC+TGG | 0.511931 | 4.3:+29792666 | MS.gene031647:CDS |
ATGCTTCTGCTAAAGAAGGA+TGG | 0.513290 | 4.3:+29786614 | MS.gene031647:CDS |
GGGAGAGGAGGTGGCAGCAG+CGG | 0.513476 | 4.3:-29783015 | None:intergenic |
CTTTCCTCACATTGCCAAGA+GGG | 0.513807 | 4.3:-29792657 | None:intergenic |
TTGGTTGTTGATGCCGGGGA+AGG | 0.513931 | 4.3:+29784181 | MS.gene031647:CDS |
ACGTGTAGTTGGTATGGTTG+AGG | 0.514995 | 4.3:+29784150 | MS.gene031647:CDS |
CCACCGAAATCGGCGTGACC+AGG | 0.515605 | 4.3:-29783347 | None:intergenic |
CAATGTTTGCATTTGGTGGG+GGG | 0.520181 | 4.3:-29786717 | None:intergenic |
TTCAAGCGAAATGGAATCCA+TGG | 0.520760 | 4.3:-29783162 | None:intergenic |
AAGTCAAACACAATCTAGTT+CGG | 0.524205 | 4.3:-29790112 | None:intergenic |
CGTGTAGTTGGTATGGTTGA+GGG | 0.526024 | 4.3:+29784151 | MS.gene031647:CDS |
CGATGAAGATGAGAAGAAGC+GGG | 0.532985 | 4.3:-29782988 | None:intergenic |
AGGAAGAGGAGAACTACAGC+TGG | 0.533238 | 4.3:+29788891 | MS.gene031647:CDS |
TCAGGTTTCAATGATGGAGA+AGG | 0.533910 | 4.3:+29787136 | MS.gene031647:intron |
AGGTTACTCCAAAGGCAATC+CGG | 0.536677 | 4.3:+29795996 | MS.gene031647:intron |
TGAGCATGTTGGCTTTGTAA+TGG | 0.537501 | 4.3:+29790028 | MS.gene031647:CDS |
CCACGGCAAAACTACTCTCA+TGG | 0.537911 | 4.3:+29783094 | MS.gene031647:CDS |
TATTCCTCACGAACGCGCCA+TGG | 0.538660 | 4.3:+29783145 | MS.gene031647:CDS |
TGAAAAGATTGAAGATGGAA+AGG | 0.539695 | 4.3:+29787256 | MS.gene031647:CDS |
GGTGCTGAAAAGATTGAAGA+TGG | 0.543566 | 4.3:+29787251 | MS.gene031647:CDS |
TACTGACATGGGTCCTGTCG+CGG | 0.543655 | 4.3:+29790079 | MS.gene031647:CDS |
CGGCCGACAGTTCCCGCGAC+AGG | 0.547284 | 4.3:-29790092 | None:intergenic |
AACAAAGTAGACCGGCCTGC+AGG | 0.547544 | 4.3:+29784274 | MS.gene031647:CDS |
GGTTTGTCAAGTCCATCAAT+CGG | 0.551309 | 4.3:+29787754 | MS.gene031647:CDS |
ACAAACTTAGTTTGGGCCAG+TGG | 0.552063 | 4.3:-29784205 | None:intergenic |
TTAATTGAGCAGGTGTCAGT+GGG | 0.552375 | 4.3:+29792827 | MS.gene031647:intron |
GTAAACGACTCCCCATTAGC+TGG | 0.554835 | 4.3:+29788545 | MS.gene031647:CDS |
AAGTCCATCAATCGGCCATA+CGG | 0.555066 | 4.3:+29787762 | MS.gene031647:CDS |
TACTAGGTGGAACGTGTAGT+TGG | 0.555583 | 4.3:+29784139 | MS.gene031647:intron |
CCGCTTCTTCTCATCTTCAT+CGG | 0.564573 | 4.3:+29782989 | MS.gene031647:CDS |
ATTTCGCTTGAACGTGAGCG+TGG | 0.565078 | 4.3:+29783173 | MS.gene031647:CDS |
GAAACTCACATGACTTTAGG+TGG | 0.568218 | 4.3:-29789055 | None:intergenic |
TCCCCATTAGCTGGTCGTGA+TGG | 0.569037 | 4.3:+29788554 | MS.gene031647:CDS |
TGACGGCGACGTTACGGAGG+CGG | 0.571202 | 4.3:-29783058 | None:intergenic |
AGGAGGATCCTTGGTATATG+TGG | 0.573836 | 4.3:-29786644 | None:intergenic |
AAATGTACGCTCTGTGAACA+AGG | 0.574425 | 4.3:+29793575 | MS.gene031647:CDS |
CTGGAAGCACATTTATGGCA+AGG | 0.574469 | 4.3:-29788843 | None:intergenic |
GCGTGAGGGATTTGAGCTAT+CGG | 0.574667 | 4.3:+29789027 | MS.gene031647:CDS |
TGGCATGAAGGTTACTCCAA+AGG | 0.578195 | 4.3:+29795988 | MS.gene031647:intron |
CCCCGCACTGACGAAGCAGC+CGG | 0.580002 | 4.3:-29783118 | None:intergenic |
AGATAATGAGTTGAATATGG+TGG | 0.580003 | 4.3:+29783319 | MS.gene031647:CDS |
TAGGGAACTAACCTGCAGGC+CGG | 0.580937 | 4.3:-29784285 | None:intergenic |
GTGGTCGACATGAGCGATGA+CGG | 0.581711 | 4.3:-29783075 | None:intergenic |
TTTGATCTATTTGCGAACCT+GGG | 0.582164 | 4.3:+29786464 | MS.gene031647:CDS |
GAGTGATGCGGCGGGAGAGG+AGG | 0.582439 | 4.3:-29783027 | None:intergenic |
GACAACAAAACCAACCTCGA+TGG | 0.586420 | 4.3:-29790137 | None:intergenic |
CTCAGCTCTTCTGTGAGACA+AGG | 0.586943 | 4.3:-29790054 | None:intergenic |
AATTGAGAATATGAGGCGTG+AGG | 0.587826 | 4.3:+29789012 | MS.gene031647:CDS |
TTGAATATGGTGGATACTCC+TGG | 0.588408 | 4.3:+29783329 | MS.gene031647:CDS |
AAGAGCTGAGATTACTGACA+TGG | 0.588803 | 4.3:+29790067 | MS.gene031647:CDS |
GAATCCATGGCGCGTTCGTG+AGG | 0.589544 | 4.3:-29783149 | None:intergenic |
GCAGTGAGACACGTGGAACT+GGG | 0.594388 | 4.3:+29792253 | MS.gene031647:CDS |
ATGTGATGAGGTTGAAAGTG+TGG | 0.594488 | 4.3:+29786439 | MS.gene031647:CDS |
CCGATGAAGATGAGAAGAAG+CGG | 0.594558 | 4.3:-29782989 | None:intergenic |
CCGGCTGCTTCGTCAGTGCG+GGG | 0.595074 | 4.3:+29783118 | MS.gene031647:CDS |
CAGGTAAATGATGAGCATGT+TGG | 0.595674 | 4.3:+29790017 | MS.gene031647:intron |
CCTCTTGGCAATGTGAGGAA+AGG | 0.605227 | 4.3:+29792658 | MS.gene031647:CDS |
GACCGGCTGCTTCGTCAGTG+CGG | 0.606562 | 4.3:+29783116 | MS.gene031647:CDS |
GGTGGAACGTGTAGTTGGTA+TGG | 0.606573 | 4.3:+29784144 | MS.gene031647:intron |
GACTGGACGCGTGCATTCTG+GGG | 0.607427 | 4.3:+29787181 | MS.gene031647:CDS |
ATGGTTGTAACTGATTGTGC+TGG | 0.608774 | 4.3:+29787706 | MS.gene031647:CDS |
GAGGCCCTCTTGGCAATGTG+AGG | 0.609090 | 4.3:+29792653 | MS.gene031647:CDS |
GTTAGGATCGAGTGATGCGG+CGG | 0.610002 | 4.3:-29783036 | None:intergenic |
TGATTGTTGGAGAACACTCA+CGG | 0.611308 | 4.3:+29793431 | MS.gene031647:CDS |
ATTAGGTATAAAACTGACAA+GGG | 0.611778 | 4.3:+29789883 | MS.gene031647:intron |
ATACTAACCAGCATTTGGAA+AGG | 0.616170 | 4.3:-29786745 | None:intergenic |
TAATGAGCTTAGAAGCTCGC+GGG | 0.618206 | 4.3:+29792876 | MS.gene031647:CDS |
AAAAGTCATAGATATTGTTG+GGG | 0.618639 | 4.3:-29788519 | None:intergenic |
TATTAGGTATAAAACTGACA+AGG | 0.620782 | 4.3:+29789882 | MS.gene031647:intron |
GTGTGGAGGAGTAGAGTGAA+CGG | 0.625565 | 4.3:-29782911 | None:intergenic |
CCTGGTCACGCCGATTTCGG+TGG | 0.628602 | 4.3:+29783347 | MS.gene031647:CDS |
CGGCCATACGGTCACTACTG+TGG | 0.628978 | 4.3:+29787774 | MS.gene031647:CDS |
GGTGAATGAATTTCGTGTGG+AGG | 0.631356 | 4.3:-29782925 | None:intergenic |
GATTGTTGGAGAACACTCAC+GGG | 0.633744 | 4.3:+29793432 | MS.gene031647:CDS |
GGAAGAGGAGAACTACAGCT+GGG | 0.635038 | 4.3:+29788892 | MS.gene031647:CDS |
CCTCCACAGTAGTGACCGTA+TGG | 0.638729 | 4.3:-29787777 | None:intergenic |
TTTGTGTACCTGTAGCACCC+AGG | 0.639752 | 4.3:-29786481 | None:intergenic |
TTAGGATCGAGTGATGCGGC+GGG | 0.641269 | 4.3:-29783035 | None:intergenic |
GCAAAACTACTCTCATGGAC+CGG | 0.641480 | 4.3:+29783099 | MS.gene031647:CDS |
AGAGGTGAATGAATTTCGTG+TGG | 0.641996 | 4.3:-29782928 | None:intergenic |
ACCATCACGACCAGCTAATG+GGG | 0.642706 | 4.3:-29788555 | None:intergenic |
AATAGAAGAAGTTACAATCG+AGG | 0.643650 | 4.3:+29789921 | MS.gene031647:CDS |
TACTCAGGAGATATGTGATG+AGG | 0.645244 | 4.3:+29786427 | MS.gene031647:CDS |
GTCATCGCTCATGTCGACCA+CGG | 0.646054 | 4.3:+29783077 | MS.gene031647:CDS |
GCATGTTGGCTTTGTAATGG+AGG | 0.648522 | 4.3:+29790031 | MS.gene031647:CDS |
TAGCAGAAGCATAAAGAACA+GGG | 0.649622 | 4.3:-29786603 | None:intergenic |
TCACGCCGATTTCGGTGGTG+AGG | 0.652597 | 4.3:+29783352 | MS.gene031647:CDS |
CCTTTCCTCACATTGCCAAG+AGG | 0.654681 | 4.3:-29792658 | None:intergenic |
CCATAAATACATACAAGGCG+AGG | 0.657019 | 4.3:-29793621 | None:intergenic |
ATGAAGATGAGAAGAAGCGG+GGG | 0.659645 | 4.3:-29782986 | None:intergenic |
GATGAAGATGAGAAGAAGCG+GGG | 0.660582 | 4.3:-29782987 | None:intergenic |
ACACACTTCTGTAACCAACC+AGG | 0.662632 | 4.3:-29792227 | None:intergenic |
AGGATCCTTGGTATATGTGG+TGG | 0.662655 | 4.3:-29786641 | None:intergenic |
CGATGACGGCGACGTTACGG+AGG | 0.663112 | 4.3:-29783061 | None:intergenic |
GATGCATACTGAGGAAAGCA+CGG | 0.663890 | 4.3:-29792284 | None:intergenic |
ATTGCAGGTTAATCCAGTGA+GGG | 0.664090 | 4.3:+29793539 | MS.gene031647:intron |
GCGGTTAGGATCGAGTGATG+CGG | 0.667937 | 4.3:-29783039 | None:intergenic |
GGCATCCACCACATATACCA+AGG | 0.670305 | 4.3:+29786636 | MS.gene031647:CDS |
TAAATACATACAAGGCGAGG+AGG | 0.674179 | 4.3:-29793618 | None:intergenic |
AGAGCTGAGATTACTGACAT+GGG | 0.682869 | 4.3:+29790068 | MS.gene031647:CDS |
AGCTTCAGATGAGCTTATCG+AGG | 0.690801 | 4.3:+29794807 | MS.gene031647:CDS |
AGCACAATCAGTTACAACCA+TGG | 0.697858 | 4.3:-29787704 | None:intergenic |
AATTGCAGGTTAATCCAGTG+AGG | 0.697946 | 4.3:+29793538 | MS.gene031647:intron |
CCATACGGTCACTACTGTGG+AGG | 0.698786 | 4.3:+29787777 | MS.gene031647:CDS |
GTGTTCAGCAGTGAGACACG+TGG | 0.702692 | 4.3:+29792246 | MS.gene031647:CDS |
TTAATGAGCTTAGAAGCTCG+CGG | 0.708697 | 4.3:+29792875 | MS.gene031647:CDS |
TGTGTTTGACTTGTCCATCG+AGG | 0.721796 | 4.3:+29790123 | MS.gene031647:CDS |
AAAGTCATAGATATTGTTGG+GGG | 0.749193 | 4.3:-29788518 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 29782891 | 29796081 | 29782891 | ID=MS.gene031647 |
chr4.3 | mRNA | 29782891 | 29796081 | 29782891 | ID=MS.gene031647.t1;Parent=MS.gene031647 |
chr4.3 | exon | 29782891 | 29783214 | 29782891 | ID=MS.gene031647.t1.exon1;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29782891 | 29783214 | 29782891 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29783299 | 29783373 | 29783299 | ID=MS.gene031647.t1.exon2;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29783299 | 29783373 | 29783299 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29784145 | 29784295 | 29784145 | ID=MS.gene031647.t1.exon3;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29784145 | 29784295 | 29784145 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29786426 | 29786494 | 29786426 | ID=MS.gene031647.t1.exon4;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29786426 | 29786494 | 29786426 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29786587 | 29786759 | 29786587 | ID=MS.gene031647.t1.exon5;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29786587 | 29786759 | 29786587 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29787140 | 29787277 | 29787140 | ID=MS.gene031647.t1.exon6;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29787140 | 29787277 | 29787140 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29787673 | 29787798 | 29787673 | ID=MS.gene031647.t1.exon7;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29787673 | 29787798 | 29787673 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29788485 | 29788583 | 29788485 | ID=MS.gene031647.t1.exon8;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29788485 | 29788583 | 29788485 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29788793 | 29788913 | 29788793 | ID=MS.gene031647.t1.exon9;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29788793 | 29788913 | 29788793 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29789005 | 29789068 | 29789005 | ID=MS.gene031647.t1.exon10;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29789005 | 29789068 | 29789005 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29789888 | 29789942 | 29789888 | ID=MS.gene031647.t1.exon11;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29789888 | 29789942 | 29789888 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29790020 | 29790144 | 29790020 | ID=MS.gene031647.t1.exon12;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29790020 | 29790144 | 29790020 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29792224 | 29792297 | 29792224 | ID=MS.gene031647.t1.exon13;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29792224 | 29792297 | 29792224 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29792638 | 29792687 | 29792638 | ID=MS.gene031647.t1.exon14;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29792638 | 29792687 | 29792638 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29792839 | 29792925 | 29792839 | ID=MS.gene031647.t1.exon15;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29792839 | 29792925 | 29792839 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29793418 | 29793468 | 29793418 | ID=MS.gene031647.t1.exon16;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29793418 | 29793468 | 29793418 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29793546 | 29793629 | 29793546 | ID=MS.gene031647.t1.exon17;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29793546 | 29793629 | 29793546 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29794778 | 29794828 | 29794778 | ID=MS.gene031647.t1.exon18;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29794778 | 29794828 | 29794778 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
chr4.3 | exon | 29795998 | 29796081 | 29795998 | ID=MS.gene031647.t1.exon19;Parent=MS.gene031647.t1 |
chr4.3 | CDS | 29795998 | 29796081 | 29795998 | ID=cds.MS.gene031647.t1;Parent=MS.gene031647.t1 |
Gene Sequence |
Protein sequence |