AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032208

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032208.t1 MTR_3g084040 93.496 123 7 1 1 123 1 122 4.78e-75 219
MS.gene032208.t1 MTR_3g084040 92.000 100 7 1 1 100 1 99 3.89e-63 188
MS.gene032208.t1 MTR_4g109540 53.719 121 50 3 1 115 1 121 1.68e-37 128
MS.gene032208.t1 MTR_4g109540 50.388 129 50 4 1 115 1 129 9.72e-35 121
MS.gene032208.t1 MTR_7g013730 48.031 127 58 3 1 123 1 123 1.10e-34 120
MS.gene032208.t1 MTR_7g013740 47.107 121 56 3 1 115 1 119 8.17e-34 115
MS.gene032208.t1 MTR_3g025880 44.275 131 61 3 1 123 1 127 6.11e-31 114
MS.gene032208.t1 MTR_3g014000 41.727 139 60 5 1 131 1 126 3.97e-27 98.2
MS.gene032208.t1 MTR_3g080130 50.588 85 41 1 37 120 36 120 3.05e-26 95.9
MS.gene032208.t1 MTR_7g105260 46.535 101 50 2 24 120 19 119 1.33e-24 91.7
MS.gene032208.t1 MTR_4g070080 51.316 76 36 1 38 112 7 82 6.34e-24 89.7
MS.gene032208.t1 MTR_4g070080 51.316 76 36 1 38 112 7 82 1.60e-23 89.7
MS.gene032208.t1 MTR_4g063560 43.820 89 49 1 27 114 23 111 1.90e-22 85.5
MS.gene032208.t1 MTR_4g070190 48.684 76 38 1 38 112 9 84 2.59e-22 86.7
MS.gene032208.t1 MTR_4g070140 50.000 76 37 1 38 112 9 84 1.01e-21 85.9
MS.gene032208.t1 MTR_7g099940 41.667 120 61 3 1 116 1 115 6.35e-21 82.4
MS.gene032208.t1 MTR_3g075500 44.318 88 44 2 38 124 207 290 2.27e-19 81.6
MS.gene032208.t1 MTR_3g075500 39.362 94 53 2 30 122 102 192 1.46e-11 60.5
MS.gene032208.t1 MTR_1g064230 49.367 79 39 1 38 115 197 275 9.27e-19 79.7
MS.gene032208.t1 MTR_4g081520 45.055 91 47 2 32 119 44 134 1.78e-18 76.3
MS.gene032208.t1 MTR_1g092860 36.792 106 63 2 23 127 178 280 1.81e-17 76.3
MS.gene032208.t1 MTR_4g104470 44.304 79 43 1 38 115 217 295 6.17e-17 75.1
MS.gene032208.t1 MTR_4g104470 43.529 85 45 2 38 121 123 205 2.20e-12 62.8
MS.gene032208.t1 MTR_1g045510 45.679 81 43 1 38 117 205 285 1.71e-16 73.9
MS.gene032208.t1 MTR_1g045510 35.294 85 54 1 37 120 113 197 3.33e-12 62.0
MS.gene032208.t1 MTR_3g055990 45.570 79 42 1 38 116 7 84 3.57e-16 73.9
MS.gene032208.t1 MTR_3g055990 45.570 79 42 1 38 116 7 84 3.60e-16 73.9
MS.gene032208.t1 MTR_6g004810 33.945 109 63 2 32 131 128 236 1.43e-15 72.0
MS.gene032208.t1 MTR_3g065190 42.697 89 49 2 37 123 112 200 7.24e-15 70.1
MS.gene032208.t1 MTR_1g097280 34.043 94 61 1 39 131 31 124 1.07e-14 69.7
MS.gene032208.t1 MTR_3g116130 35.714 84 54 0 37 120 29 112 1.45e-14 68.6
MS.gene032208.t1 MTR_3g116130 35.714 84 54 0 37 120 29 112 1.88e-14 68.9
MS.gene032208.t1 MTR_3g029580 34.043 94 58 3 19 109 13 105 1.95e-14 65.5
MS.gene032208.t1 MTR_1g073690 36.471 85 54 0 33 117 108 192 2.05e-14 68.9
MS.gene032208.t1 MTR_1g073690 36.709 79 49 1 38 116 7 84 1.20e-11 60.8
MS.gene032208.t1 MTR_7g117495 40.580 69 41 0 37 105 18 86 3.34e-14 67.0
MS.gene032208.t1 MTR_7g117495 40.580 69 41 0 37 105 18 86 3.38e-14 67.0
MS.gene032208.t1 MTR_6g477870 35.000 80 51 1 37 115 95 174 3.78e-14 65.9
MS.gene032208.t1 MTR_4g124940 45.333 75 40 1 39 112 133 207 4.27e-14 67.8
MS.gene032208.t1 MTR_5g097580 41.250 80 46 1 36 115 5 83 4.65e-14 67.8
MS.gene032208.t1 MTR_5g097580 41.250 80 46 1 36 115 5 83 4.78e-14 67.8
MS.gene032208.t1 MTR_4g035310 35.484 93 56 1 37 125 16 108 5.01e-14 67.0
MS.gene032208.t1 MTR_4g074930 38.462 104 59 2 31 130 358 460 5.15e-14 67.8
MS.gene032208.t1 MTR_4g035310 35.484 93 56 1 37 125 16 108 5.24e-14 67.0
MS.gene032208.t1 MTR_7g106440 40.230 87 51 1 35 120 210 296 5.56e-14 67.0
MS.gene032208.t1 MTR_8g022050 45.122 82 43 2 39 119 149 229 5.72e-14 67.4
MS.gene032208.t1 MTR_4g074930 38.542 96 58 1 31 126 370 464 5.91e-14 67.4
MS.gene032208.t1 MTR_4g074930 38.542 96 58 1 31 126 323 417 6.03e-14 67.4
MS.gene032208.t1 MTR_4g074930 38.542 96 58 1 31 126 335 429 6.22e-14 67.4
MS.gene032208.t1 MTR_8g024520 42.029 69 40 0 37 105 25 93 7.22e-14 66.6
MS.gene032208.t1 MTR_8g024520 42.029 69 40 0 37 105 25 93 7.34e-14 66.6
MS.gene032208.t1 MTR_4g081510 33.621 116 66 4 3 115 16 123 2.15e-13 63.9
MS.gene032208.t1 MTR_2g026180 40.244 82 48 1 34 115 1 81 2.67e-13 65.5
MS.gene032208.t1 MTR_2g026180 31.250 96 65 1 34 129 103 197 3.15e-11 59.7
MS.gene032208.t1 MTR_3g092490 40.260 77 44 1 37 111 26 102 2.85e-13 63.5
MS.gene032208.t1 MTR_5g071540 33.673 98 56 2 22 110 16 113 2.97e-13 62.8
MS.gene032208.t1 MTR_1g036430 41.176 85 49 1 36 120 161 244 3.43e-13 65.5
MS.gene032208.t1 MTR_3g103420 34.118 85 56 0 32 116 112 196 4.64e-13 64.7
MS.gene032208.t1 MTR_3g103420 38.636 88 53 1 28 115 1 87 9.57e-12 61.2
MS.gene032208.t1 MTR_2g096560 36.250 80 50 1 37 115 7 86 5.01e-13 60.8
MS.gene032208.t1 MTR_3g092490 40.260 77 44 1 37 111 26 102 5.46e-13 63.9
MS.gene032208.t1 MTR_3g092490 40.260 77 44 1 37 111 26 102 5.68e-13 63.9
MS.gene032208.t1 MTR_7g107580 38.824 85 51 1 37 120 349 433 5.92e-13 64.7
MS.gene032208.t1 MTR_7g107580 38.824 85 51 1 37 120 348 432 6.03e-13 64.7
MS.gene032208.t1 MTR_5g064120 35.065 77 50 0 37 113 16 92 7.83e-13 63.9
MS.gene032208.t1 MTR_4g117350 37.500 80 49 1 35 113 69 148 1.56e-12 61.2
MS.gene032208.t1 MTR_5g044970 36.250 80 50 1 34 112 7 86 1.74e-12 61.2
MS.gene032208.t1 MTR_3g029580 32.941 85 53 3 19 100 13 96 2.13e-12 60.5
MS.gene032208.t1 MTR_3g109090 42.683 82 45 2 39 119 131 211 2.22e-12 62.8
MS.gene032208.t1 MTR_3g109090 42.683 82 45 2 39 119 147 227 2.24e-12 62.8
MS.gene032208.t1 MTR_3g075500 40.625 64 37 1 38 100 207 270 2.36e-12 62.4
MS.gene032208.t1 MTR_3g075500 39.362 94 53 2 30 122 102 192 1.05e-11 60.5
MS.gene032208.t1 MTR_8g463890 43.056 72 41 0 34 105 70 141 2.43e-12 62.8
MS.gene032208.t1 MTR_1g019150 36.170 94 59 1 21 113 16 109 3.36e-12 62.4
MS.gene032208.t1 MTR_1g020080 35.870 92 57 2 39 128 192 283 6.76e-12 61.2
MS.gene032208.t1 MTR_1g056520 38.272 81 49 1 35 114 205 285 1.05e-11 60.8
MS.gene032208.t1 MTR_1g020080 36.364 88 54 2 39 124 192 279 1.20e-11 60.8
MS.gene032208.t1 MTR_4g036415 39.024 82 49 1 32 112 446 527 2.11e-11 60.5
MS.gene032208.t1 MTR_4g088010 30.769 91 61 1 34 124 160 248 3.52e-11 59.3
MS.gene032208.t1 MTR_4g088010 39.189 74 45 0 32 105 71 144 7.60e-11 58.5
MS.gene032208.t1 MTR_2g026180 32.609 92 61 1 38 129 37 127 3.52e-11 59.7
MS.gene032208.t1 MTR_2g097960 39.759 83 48 2 39 119 110 192 4.24e-11 59.3
MS.gene032208.t1 MTR_4g085540 37.975 79 48 1 36 113 33 111 4.96e-11 59.3
MS.gene032208.t1 MTR_5g017280 36.145 83 52 1 34 116 1 82 7.92e-11 58.5
MS.gene032208.t1 MTR_5g017280 36.145 83 52 1 34 116 1 82 8.50e-11 58.5
MS.gene032208.t1 MTR_8g092550 34.615 78 50 1 38 114 304 381 9.21e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032208.t1 AT3G23830 60.656 122 44 4 1 121 1 119 4.62e-45 143
MS.gene032208.t1 AT3G23830 60.656 122 44 4 1 121 1 119 4.62e-45 143
MS.gene032208.t1 AT4G13850 62.295 122 42 4 1 121 1 119 1.13e-43 140
MS.gene032208.t1 AT4G13850 63.793 116 39 3 1 115 1 114 1.32e-43 139
MS.gene032208.t1 AT4G13850 62.295 122 42 4 1 121 1 119 1.48e-43 140
MS.gene032208.t1 AT4G13850 62.295 122 42 4 1 121 1 119 1.72e-43 140
MS.gene032208.t1 AT5G61030 55.462 119 49 2 1 115 1 119 2.96e-39 134
MS.gene032208.t1 AT5G61030 55.462 119 49 2 1 115 1 119 2.96e-39 134
MS.gene032208.t1 AT1G74230 54.386 114 49 1 1 114 1 111 7.55e-38 130
MS.gene032208.t1 AT5G47320 56.522 115 43 3 1 114 1 109 2.41e-34 119
MS.gene032208.t1 AT3G08000 58.333 84 34 1 38 120 42 125 9.87e-28 100
MS.gene032208.t1 AT5G06210 50.000 96 45 2 32 126 29 122 1.54e-23 89.4
MS.gene032208.t1 AT2G21660 48.684 76 38 1 38 112 9 84 2.26e-21 84.0
MS.gene032208.t1 AT5G59865 47.191 89 46 1 35 122 24 112 2.54e-21 82.8
MS.gene032208.t1 AT2G21660 48.684 76 38 1 38 112 9 84 3.36e-21 84.0
MS.gene032208.t1 AT2G37220 53.165 79 36 1 38 115 205 283 4.84e-21 85.9
MS.gene032208.t1 AT2G37220 41.860 86 43 2 38 122 92 171 2.37e-12 62.4
MS.gene032208.t1 AT3G53460 50.602 83 40 1 38 119 258 340 1.46e-20 85.5
MS.gene032208.t1 AT3G53460 43.023 86 42 2 38 122 100 179 4.20e-11 59.3
MS.gene032208.t1 AT3G53460 50.602 83 40 1 38 119 258 340 1.46e-20 85.5
MS.gene032208.t1 AT3G53460 43.023 86 42 2 38 122 100 179 4.20e-11 59.3
MS.gene032208.t1 AT3G53460 50.602 83 40 1 38 119 258 340 1.46e-20 85.5
MS.gene032208.t1 AT3G53460 43.023 86 42 2 38 122 100 179 4.20e-11 59.3
MS.gene032208.t1 AT3G53460 50.602 83 40 1 38 119 279 361 1.59e-20 85.5
MS.gene032208.t1 AT4G39260 40.000 95 47 2 38 131 7 92 1.84e-20 79.7
MS.gene032208.t1 AT1G18630 39.474 114 64 3 1 113 4 113 6.77e-19 77.8
MS.gene032208.t1 AT4G24770 47.126 87 42 2 38 123 245 328 6.98e-19 80.9
MS.gene032208.t1 AT4G24770 39.000 100 57 2 24 122 137 233 2.87e-12 62.4
MS.gene032208.t1 AT4G24770 47.126 87 42 2 38 123 245 328 6.98e-19 80.9
MS.gene032208.t1 AT4G24770 39.000 100 57 2 24 122 137 233 2.87e-12 62.4
MS.gene032208.t1 AT3G26420 45.882 85 45 1 38 121 8 92 1.17e-18 79.0
MS.gene032208.t1 AT5G50250 44.304 79 43 1 38 115 208 286 5.58e-18 77.8
MS.gene032208.t1 AT5G50250 43.678 87 45 2 37 122 113 196 9.15e-13 63.5
MS.gene032208.t1 AT2G37510 48.052 77 39 1 34 109 31 107 6.89e-18 74.7
MS.gene032208.t1 AT4G39260 40.789 76 44 1 38 112 7 82 1.99e-17 73.2
MS.gene032208.t1 AT4G39260 40.789 76 44 1 38 112 7 82 5.27e-17 73.2
MS.gene032208.t1 AT1G60000 48.193 83 42 1 35 116 175 257 5.82e-17 74.7
MS.gene032208.t1 AT4G13860 46.667 75 39 1 36 109 2 76 7.32e-17 70.5
MS.gene032208.t1 AT3G46020 42.500 80 45 1 36 114 6 85 1.61e-16 70.1
MS.gene032208.t1 AT3G20930 34.545 110 61 2 19 127 274 373 3.98e-16 73.6
MS.gene032208.t1 AT5G54580 42.683 82 46 1 36 116 55 136 4.43e-16 70.5
MS.gene032208.t1 AT1G76460 38.462 91 53 1 37 127 24 111 1.50e-15 71.2
MS.gene032208.t1 AT3G52380 41.573 89 51 1 35 122 217 305 2.26e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.00e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.00e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.00e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.00e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.00e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.12e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.12e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.12e-15 71.2
MS.gene032208.t1 AT5G55550 43.038 79 44 1 38 116 7 84 3.12e-15 71.2
MS.gene032208.t1 AT5G55550 45.714 70 37 1 38 107 7 75 7.42e-15 70.1
MS.gene032208.t1 AT5G55550 45.714 70 37 1 38 107 7 75 7.75e-15 70.1
MS.gene032208.t1 AT1G60650 38.000 100 57 2 36 130 11 110 8.44e-15 69.3
MS.gene032208.t1 AT1G60650 38.000 100 57 2 36 130 11 110 8.44e-15 69.3
MS.gene032208.t1 AT2G22100 37.778 90 56 0 32 121 158 247 1.04e-14 69.7
MS.gene032208.t1 AT1G54080 43.038 79 44 1 35 112 146 224 1.79e-14 68.9
MS.gene032208.t1 AT2G46780 37.234 94 54 1 37 125 22 115 1.80e-14 68.6
MS.gene032208.t1 AT2G46780 37.234 94 54 1 37 125 22 115 1.80e-14 68.6
MS.gene032208.t1 AT1G33470 42.029 69 40 0 37 105 7 75 1.99e-14 67.8
MS.gene032208.t1 AT1G33470 42.029 69 40 0 37 105 7 75 2.00e-14 67.8
MS.gene032208.t1 AT1G33470 42.029 69 40 0 37 105 7 75 2.03e-14 67.8
MS.gene032208.t1 AT3G07810 41.026 78 45 1 38 115 7 83 2.22e-14 68.9
MS.gene032208.t1 AT3G07810 41.026 78 45 1 38 115 7 83 2.22e-14 68.9
MS.gene032208.t1 AT1G22910 38.961 77 47 0 37 113 13 89 2.25e-14 67.4
MS.gene032208.t1 AT1G22910 38.961 77 47 0 37 113 13 89 2.29e-14 67.8
MS.gene032208.t1 AT3G14100 44.000 75 41 1 39 112 146 220 2.47e-14 68.6
MS.gene032208.t1 AT1G48920 39.000 100 56 1 36 130 296 395 2.75e-14 68.6
MS.gene032208.t1 AT2G18510 41.573 89 50 2 37 123 112 200 2.76e-14 68.2
MS.gene032208.t1 AT5G04280 39.744 78 46 1 37 113 7 84 2.93e-14 67.8
MS.gene032208.t1 AT4G26650 42.308 78 44 1 38 115 13 89 3.52e-14 68.2
MS.gene032208.t1 AT4G26650 31.034 87 60 0 36 122 118 204 2.82e-11 59.7
MS.gene032208.t1 AT4G26650 42.308 78 44 1 38 115 16 92 3.53e-14 68.2
MS.gene032208.t1 AT4G26650 31.034 87 60 0 36 122 121 207 3.02e-11 59.7
MS.gene032208.t1 AT1G20880 38.961 77 47 0 37 113 24 100 4.29e-14 67.0
MS.gene032208.t1 AT1G20880 38.961 77 47 0 37 113 24 100 4.29e-14 67.0
MS.gene032208.t1 AT1G20880 38.961 77 47 0 37 113 24 100 4.29e-14 67.0
MS.gene032208.t1 AT1G22330 36.559 93 56 1 37 129 17 106 5.07e-14 67.0
MS.gene032208.t1 AT1G22910 38.961 77 47 0 37 113 13 89 5.49e-14 67.4
MS.gene032208.t1 AT4G13860 53.448 58 26 1 53 109 2 59 6.02e-14 62.8
MS.gene032208.t1 AT5G47620 39.759 83 49 1 33 115 2 83 7.10e-14 67.4
MS.gene032208.t1 AT5G47620 33.333 78 52 0 35 112 104 181 2.99e-11 59.7
MS.gene032208.t1 AT5G47620 39.759 83 49 1 33 115 2 83 7.10e-14 67.4
MS.gene032208.t1 AT5G47620 33.333 78 52 0 35 112 104 181 2.99e-11 59.7
MS.gene032208.t1 AT5G47620 39.759 83 49 1 33 115 2 83 7.10e-14 67.4
MS.gene032208.t1 AT5G47620 33.333 78 52 0 35 112 104 181 2.99e-11 59.7
MS.gene032208.t1 AT1G78260 36.364 77 49 0 37 113 17 93 9.48e-14 66.2
MS.gene032208.t1 AT5G47620 50.847 59 29 0 33 91 2 60 1.26e-13 66.6
MS.gene032208.t1 AT5G47620 33.333 78 52 0 35 112 126 203 3.53e-11 59.7
MS.gene032208.t1 AT1G78260 36.364 77 49 0 37 113 17 93 1.30e-13 65.9
MS.gene032208.t1 AT4G39260 38.983 59 36 0 38 96 7 65 1.34e-13 62.8
MS.gene032208.t1 AT3G13224 36.667 90 56 1 29 117 92 181 2.50e-13 65.5
MS.gene032208.t1 AT2G27330 31.579 95 64 1 36 129 20 114 2.84e-13 62.0
MS.gene032208.t1 AT3G13224 36.667 90 56 1 29 117 101 190 2.92e-13 65.5
MS.gene032208.t1 AT3G13224 45.588 68 37 0 29 96 101 168 3.32e-13 64.3
MS.gene032208.t1 AT1G17640 34.694 98 61 2 35 130 155 251 3.79e-13 65.1
MS.gene032208.t1 AT1G17640 34.694 98 61 2 35 130 155 251 3.79e-13 65.1
MS.gene032208.t1 AT1G17640 34.694 98 61 2 35 130 155 251 3.79e-13 65.1
MS.gene032208.t1 AT3G54770 36.364 77 49 0 37 113 17 93 3.81e-13 64.3
MS.gene032208.t1 AT3G54770 36.364 77 49 0 37 113 17 93 4.00e-13 64.3
MS.gene032208.t1 AT2G21690 39.437 71 42 1 40 109 10 80 4.76e-13 61.6
MS.gene032208.t1 AT1G17370 44.000 75 41 1 39 112 141 215 8.93e-13 64.3
MS.gene032208.t1 AT1G17370 44.000 75 41 1 39 112 141 215 9.22e-13 63.9
MS.gene032208.t1 AT1G71800 35.443 79 49 2 39 115 11 89 9.38e-13 63.9
MS.gene032208.t1 AT4G14300 40.506 79 46 1 38 116 7 84 1.10e-12 63.9
MS.gene032208.t1 AT4G14300 34.146 82 54 0 36 117 109 190 3.56e-12 62.4
MS.gene032208.t1 AT4G14300 40.506 79 46 1 38 116 7 84 1.10e-12 63.9
MS.gene032208.t1 AT4G14300 34.146 82 54 0 36 117 109 190 3.56e-12 62.4
MS.gene032208.t1 AT1G01080 37.975 79 49 0 31 109 206 284 1.25e-12 63.2
MS.gene032208.t1 AT1G01080 37.975 79 49 0 31 109 207 285 1.29e-12 63.2
MS.gene032208.t1 AT1G49760 43.590 78 43 1 36 112 44 121 1.45e-12 63.5
MS.gene032208.t1 AT1G49760 43.590 78 43 1 36 112 44 121 1.45e-12 63.5
MS.gene032208.t1 AT1G54080 40.964 83 44 2 35 112 146 228 1.76e-12 63.2
MS.gene032208.t1 AT4G00830 34.783 92 57 2 25 115 106 195 1.89e-12 63.2
MS.gene032208.t1 AT4G00830 34.783 92 57 2 25 115 106 195 1.89e-12 63.2
MS.gene032208.t1 AT4G00830 34.783 92 57 2 25 115 106 195 1.89e-12 63.2
MS.gene032208.t1 AT2G33410 37.349 83 51 1 38 120 7 88 2.06e-12 63.2
MS.gene032208.t1 AT2G33410 35.294 85 55 0 33 117 106 190 4.22e-12 62.4
MS.gene032208.t1 AT4G00830 36.782 87 52 2 25 110 106 190 2.14e-12 63.2
MS.gene032208.t1 AT4G00830 36.782 87 52 2 25 110 106 190 2.14e-12 63.2
MS.gene032208.t1 AT5G11412 34.211 76 50 0 37 112 52 127 2.37e-12 61.2
MS.gene032208.t1 AT2G37510 36.275 102 39 2 34 109 31 132 2.45e-12 60.8
MS.gene032208.t1 AT2G19380 33.333 84 56 0 32 115 403 486 3.08e-12 62.8
MS.gene032208.t1 AT5G53720 36.364 77 49 0 36 112 8 84 3.50e-12 58.9
MS.gene032208.t1 AT3G18610 39.535 86 49 2 36 121 383 465 3.76e-12 62.4
MS.gene032208.t1 AT4G03110 36.471 85 53 1 37 120 349 433 4.42e-12 62.0
MS.gene032208.t1 AT1G73530 33.333 81 53 1 36 115 76 156 4.84e-12 60.5
MS.gene032208.t1 AT4G20030 34.286 105 60 4 25 124 31 131 5.95e-12 59.7
MS.gene032208.t1 AT3G18610 39.535 86 49 2 36 121 353 435 6.18e-12 62.0
MS.gene032208.t1 AT5G53680 34.615 78 49 1 37 112 13 90 7.09e-12 59.7
MS.gene032208.t1 AT3G18610 39.535 86 49 2 36 121 323 405 8.86e-12 61.2
MS.gene032208.t1 AT1G03457 34.177 79 51 1 37 114 225 303 1.09e-11 60.8
MS.gene032208.t1 AT1G47490 37.234 94 57 2 39 130 199 292 1.17e-11 60.8
MS.gene032208.t1 AT5G51300 36.585 82 51 1 32 112 475 556 1.85e-11 60.5
MS.gene032208.t1 AT5G51300 36.585 82 51 1 32 112 475 556 1.85e-11 60.5
MS.gene032208.t1 AT5G51300 36.585 82 51 1 32 112 475 556 1.85e-11 60.5
MS.gene032208.t1 AT1G47490 37.234 94 57 2 39 130 199 292 2.09e-11 60.1
MS.gene032208.t1 AT5G47620 33.766 77 51 0 36 112 45 121 2.58e-11 60.1
MS.gene032208.t1 AT5G54900 39.506 81 47 2 39 117 156 236 2.73e-11 59.7
MS.gene032208.t1 AT1G13690 37.333 75 46 1 39 112 15 89 3.02e-11 58.2
MS.gene032208.t1 AT5G40490 32.927 82 54 1 36 116 112 193 3.09e-11 59.7
MS.gene032208.t1 AT3G15010 40.278 72 43 0 34 105 72 143 3.30e-11 59.7
MS.gene032208.t1 AT3G15010 40.278 72 43 0 34 105 72 143 3.30e-11 59.7
MS.gene032208.t1 AT3G10400 37.975 79 48 1 37 114 57 135 5.89e-11 58.5
MS.gene032208.t1 AT1G47500 36.170 94 58 2 39 130 201 294 6.64e-11 58.5
MS.gene032208.t1 AT1G47500 36.170 94 58 2 39 130 201 294 7.88e-11 58.5
MS.gene032208.t1 AT4G34110 35.644 101 64 1 14 113 13 113 9.05e-11 58.5
MS.gene032208.t1 AT1G01080 37.681 69 43 0 31 99 206 274 9.40e-11 58.2

Find 44 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATGGACAGGATTTAAA+TGG 0.332884 2.3:+4212138 MS.gene032208:CDS
ACTGGAAGATCAAGGGGATT+TGG 0.334462 2.3:+4212069 MS.gene032208:CDS
ATGGCTTTCTGTAACAAGAT+TGG 0.370753 2.3:+4211850 MS.gene032208:CDS
CAGGAGGAGCTTGAGTGCTC+TGG 0.380860 2.3:-4211897 None:intergenic
TGCAACTTCAGCACTCTCTA+TGG 0.384662 2.3:+4212119 MS.gene032208:CDS
GTGGCTATGGCGGTGGTGGT+TGG 0.397607 2.3:+4212220 MS.gene032208:CDS
CATAGGACACACGAATGTTT+CGG 0.398236 2.3:-4212161 None:intergenic
TGTTGATGATCAGTCTCTTA+AGG 0.437494 2.3:+4211990 MS.gene032208:CDS
ACCACCGCCATAGCCACCTC+CGG 0.442288 2.3:-4212214 None:intergenic
CCTCGTCCCGGAGGTGGCTA+TGG 0.454161 2.3:+4212207 MS.gene032208:CDS
TAGTTAAGCATGGATGAAAC+AGG 0.461015 2.3:-4211916 None:intergenic
GGAGGTGGCTATGGCGGTGG+TGG 0.469031 2.3:+4212216 MS.gene032208:CDS
AGCACTCTCTATGGATGGAC+AGG 0.475981 2.3:+4212128 MS.gene032208:CDS
GGTGGACCTCGTCCCGGAGG+TGG 0.479282 2.3:+4212201 MS.gene032208:CDS
CCCGGAGGTGGCTATGGCGG+TGG 0.480523 2.3:+4212213 MS.gene032208:CDS
GATCATCAACATGGTAAGAA+AGG 0.505312 2.3:-4211978 None:intergenic
ATAGAGACACTGGAAGATCA+AGG 0.517492 2.3:+4212061 MS.gene032208:CDS
CAGGCTGGTGGACCTCGTCC+CGG 0.532193 2.3:+4212195 MS.gene032208:CDS
AAGGATGCATTTACAACCTA+CGG 0.532917 2.3:+4212009 MS.gene032208:CDS
AGGAGGAGCTTGAGTGCTCT+GGG 0.537306 2.3:-4211896 None:intergenic
CCATAGCCACCTCCGGGACG+AGG 0.541011 2.3:-4212207 None:intergenic
GGGTACCACCTTGCCTCAAG+AGG 0.543148 2.3:-4211876 None:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 2.3:+4212176 MS.gene032208:CDS
CCACCGCCATAGCCACCTCC+GGG 0.578140 2.3:-4212213 None:intergenic
GTTATCACTGATAGAGACAC+TGG 0.581409 2.3:+4212051 MS.gene032208:CDS
ACTTCAGCACTCTCTATGGA+TGG 0.581897 2.3:+4212123 MS.gene032208:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 2.3:+4212180 MS.gene032208:CDS
TGCCTCAACCACTTCTCCGT+AGG 0.589946 2.3:-4212025 None:intergenic
TAGAGACACTGGAAGATCAA+GGG 0.594765 2.3:+4212062 MS.gene032208:CDS
CGTCCCGGAGGTGGCTATGG+CGG 0.598189 2.3:+4212210 MS.gene032208:CDS
AGAGACACTGGAAGATCAAG+GGG 0.604078 2.3:+4212063 MS.gene032208:CDS
ATTTACAACCTACGGAGAAG+TGG 0.607456 2.3:+4212017 MS.gene032208:CDS
AACCTACGGAGAAGTGGTTG+AGG 0.621999 2.3:+4212023 MS.gene032208:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 2.3:-4211926 None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 2.3:+4211868 MS.gene032208:CDS
TGAAGTTGCAGACTCTTGAG+TGG 0.654691 2.3:-4212106 None:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 2.3:-4212178 None:intergenic
ACAAGATTGGAAACCTCTTG+AGG 0.658250 2.3:+4211863 MS.gene032208:CDS
GCAAATGATAGACAGGCTGG+TGG 0.673979 2.3:+4212183 MS.gene032208:CDS
GCTGGTGGACCTCGTCCCGG+AGG 0.683775 2.3:+4212198 MS.gene032208:CDS
GGAAACCTCTTGAGGCAAGG+TGG 0.688707 2.3:+4211871 MS.gene032208:CDS
TAAGAGACTGATCATCAACA+TGG 0.702631 2.3:-4211987 None:intergenic
TTAAGCATGGATGAAACAGG+AGG 0.710474 2.3:-4211913 None:intergenic
AAAGCTTGCTTGAAGACATG+TGG 0.718559 2.3:-4211945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGATGCATTTACAACCTA+CGG + chr2.3:4212009-4212028 MS.gene032208:CDS 35.0%
ATGGATGGACAGGATTTAAA+TGG + chr2.3:4212138-4212157 MS.gene032208:CDS 35.0%
ATGGCTTTCTGTAACAAGAT+TGG + chr2.3:4211850-4211869 MS.gene032208:CDS 35.0%
GATCATCAACATGGTAAGAA+AGG - chr2.3:4211981-4212000 None:intergenic 35.0%
TAAGAGACTGATCATCAACA+TGG - chr2.3:4211990-4212009 None:intergenic 35.0%
TAGTTAAGCATGGATGAAAC+AGG - chr2.3:4211919-4211938 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + chr2.3:4211952-4211971 MS.gene032208:CDS 35.0%
!! TGTTGATGATCAGTCTCTTA+AGG + chr2.3:4211990-4212009 MS.gene032208:CDS 35.0%
ACAAGATTGGAAACCTCTTG+AGG + chr2.3:4211863-4211882 MS.gene032208:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - chr2.3:4212181-4212200 None:intergenic 40.0%
ATAGAGACACTGGAAGATCA+AGG + chr2.3:4212061-4212080 MS.gene032208:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + chr2.3:4212017-4212036 MS.gene032208:CDS 40.0%
CATAGGACACACGAATGTTT+CGG - chr2.3:4212164-4212183 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + chr2.3:4212176-4212195 MS.gene032208:CDS 40.0%
GTTATCACTGATAGAGACAC+TGG + chr2.3:4212051-4212070 MS.gene032208:CDS 40.0%
TAGAGACACTGGAAGATCAA+GGG + chr2.3:4212062-4212081 MS.gene032208:CDS 40.0%
TATGCAAATGATAGACAGGC+TGG + chr2.3:4212180-4212199 MS.gene032208:CDS 40.0%
TTAAGCATGGATGAAACAGG+AGG - chr2.3:4211916-4211935 None:intergenic 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - chr2.3:4211948-4211967 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + chr2.3:4211955-4211974 MS.gene032208:CDS 40.0%
ACTGGAAGATCAAGGGGATT+TGG + chr2.3:4212069-4212088 MS.gene032208:CDS 45.0%
ACTTCAGCACTCTCTATGGA+TGG + chr2.3:4212123-4212142 MS.gene032208:CDS 45.0%
AGAGACACTGGAAGATCAAG+GGG + chr2.3:4212063-4212082 MS.gene032208:CDS 45.0%
ATTGGAAACCTCTTGAGGCA+AGG + chr2.3:4211868-4211887 MS.gene032208:CDS 45.0%
TGAAGTTGCAGACTCTTGAG+TGG - chr2.3:4212109-4212128 None:intergenic 45.0%
TGCAACTTCAGCACTCTCTA+TGG + chr2.3:4212119-4212138 MS.gene032208:CDS 45.0%
AACCTACGGAGAAGTGGTTG+AGG + chr2.3:4212023-4212042 MS.gene032208:CDS 50.0%
AGCACTCTCTATGGATGGAC+AGG + chr2.3:4212128-4212147 MS.gene032208:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG + chr2.3:4212183-4212202 MS.gene032208:CDS 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - chr2.3:4211929-4211948 None:intergenic 50.0%
AGGAGGAGCTTGAGTGCTCT+GGG - chr2.3:4211899-4211918 None:intergenic 55.0%
GGAAACCTCTTGAGGCAAGG+TGG + chr2.3:4211871-4211890 MS.gene032208:CDS 55.0%
TGCCTCAACCACTTCTCCGT+AGG - chr2.3:4212028-4212047 None:intergenic 55.0%
CAGGAGGAGCTTGAGTGCTC+TGG - chr2.3:4211900-4211919 None:intergenic 60.0%
GGGTACCACCTTGCCTCAAG+AGG - chr2.3:4211879-4211898 None:intergenic 60.0%
ACCACCGCCATAGCCACCTC+CGG - chr2.3:4212217-4212236 None:intergenic 65.0%
! GTGGCTATGGCGGTGGTGGT+TGG + chr2.3:4212220-4212239 MS.gene032208:CDS 65.0%
CCACCGCCATAGCCACCTCC+GGG - chr2.3:4212216-4212235 None:intergenic 70.0%
CCATAGCCACCTCCGGGACG+AGG - chr2.3:4212210-4212229 None:intergenic 70.0%
CCTCGTCCCGGAGGTGGCTA+TGG + chr2.3:4212207-4212226 MS.gene032208:CDS 70.0%
CGTCCCGGAGGTGGCTATGG+CGG + chr2.3:4212210-4212229 MS.gene032208:CDS 70.0%
GGAGGTGGCTATGGCGGTGG+TGG + chr2.3:4212216-4212235 MS.gene032208:CDS 70.0%
! CAGGCTGGTGGACCTCGTCC+CGG + chr2.3:4212195-4212214 MS.gene032208:CDS 70.0%
CCCGGAGGTGGCTATGGCGG+TGG + chr2.3:4212213-4212232 MS.gene032208:CDS 75.0%
GGTGGACCTCGTCCCGGAGG+TGG + chr2.3:4212201-4212220 MS.gene032208:CDS 75.0%
! GCTGGTGGACCTCGTCCCGG+AGG + chr2.3:4212198-4212217 MS.gene032208:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 4211850 4212245 4211850 ID=MS.gene032208
chr2.3 mRNA 4211850 4212245 4211850 ID=MS.gene032208.t1;Parent=MS.gene032208
chr2.3 exon 4211850 4212245 4211850 ID=MS.gene032208.t1.exon1;Parent=MS.gene032208.t1
chr2.3 CDS 4211850 4212245 4211850 ID=cds.MS.gene032208.t1;Parent=MS.gene032208.t1
Gene Sequence

>MS.gene032208

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTCAAGCTCCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGCCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTATGGCGGTGGTGGTTGGTGA
Protein sequence

>MS.gene032208.t1

MAFCNKIGNLLRQGGTQSTQAPPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGW