AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032373

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032373.t1 MTR_8g461160 91.646 395 30 2 1 393 1 394 0.0 706
MS.gene032373.t1 MTR_3g101180 70.000 400 113 3 1 393 1 400 0.0 554
MS.gene032373.t1 MTR_3g101010 68.394 386 119 2 6 391 5 387 0.0 522
MS.gene032373.t1 MTR_7g451890 66.582 392 130 1 2 392 10 401 0.0 511
MS.gene032373.t1 MTR_7g047780 65.816 392 133 1 2 392 10 401 0.0 511
MS.gene032373.t1 MTR_3g018740 66.581 389 124 3 6 393 5 388 3.31e-180 506
MS.gene032373.t1 MTR_7g050750 65.816 392 133 1 2 392 4 395 4.96e-180 506
MS.gene032373.t1 MTR_4g045707 64.141 396 127 3 1 391 1 386 3.59e-179 504
MS.gene032373.t1 MTR_7g050810 63.959 394 137 2 2 392 12 403 4.13e-174 491
MS.gene032373.t1 MTR_8g027395 63.212 386 135 2 6 391 17 395 7.33e-171 483
MS.gene032373.t1 MTR_3g101130 60.870 391 149 1 1 391 1 387 2.86e-170 481
MS.gene032373.t1 MTR_3g101030 61.713 397 131 5 12 391 35 427 2.99e-170 483
MS.gene032373.t1 MTR_3g048000 60.668 389 129 4 4 391 25 390 2.50e-161 459
MS.gene032373.t1 MTR_8g027420 60.363 386 135 3 6 391 6 373 3.05e-159 452
MS.gene032373.t1 MTR_4g088525 59.621 369 144 1 23 391 4 367 3.95e-158 449
MS.gene032373.t1 MTR_3g015620 59.645 394 122 6 6 392 16 379 1.71e-153 438
MS.gene032373.t1 MTR_3g101050 59.591 391 138 5 4 393 27 398 4.11e-152 435
MS.gene032373.t1 MTR_2g046030 58.418 392 151 5 6 393 5 388 9.98e-152 434
MS.gene032373.t1 MTR_2g045980 58.418 392 151 5 6 393 5 388 1.43e-150 431
MS.gene032373.t1 MTR_4g088535 57.922 385 139 4 4 388 5 366 4.27e-148 424
MS.gene032373.t1 MTR_3g101200 55.076 394 149 4 1 393 26 392 9.30e-137 396
MS.gene032373.t1 MTR_3g102920 53.616 401 132 7 4 391 49 408 4.14e-130 380
MS.gene032373.t1 MTR_3g101190 55.769 364 93 3 30 391 13 310 4.10e-129 374
MS.gene032373.t1 MTR_7g050830 56.918 318 106 2 2 299 12 318 2.88e-121 354
MS.gene032373.t1 MTR_3g100995 64.202 257 88 2 136 392 11 263 1.50e-114 335
MS.gene032373.t1 MTR_3g015760 67.170 265 76 5 132 392 23 280 7.22e-110 323
MS.gene032373.t1 MTR_3g018747 62.264 265 79 5 132 393 9 255 1.44e-106 314
MS.gene032373.t1 MTR_3g100010 52.581 310 99 3 33 309 42 336 7.86e-103 308
MS.gene032373.t1 MTR_3g100520 59.729 221 73 4 173 391 1 207 1.44e-83 254
MS.gene032373.t1 MTR_3g111160 59.729 221 84 3 173 391 1 218 4.49e-83 253
MS.gene032373.t1 MTR_3g114310 41.371 394 205 11 12 390 25 407 6.33e-83 259
MS.gene032373.t1 MTR_3g101110 57.261 241 70 5 132 367 68 280 4.25e-79 245
MS.gene032373.t1 MTR_3g099970 62.245 196 57 2 132 327 20 198 1.51e-78 241
MS.gene032373.t1 MTR_2g046410 58.373 209 80 3 189 393 144 349 1.54e-75 238
MS.gene032373.t1 MTR_3g101150 68.790 157 46 2 238 391 1 157 9.61e-68 211
MS.gene032373.t1 MTR_3g101020 55.615 187 55 2 206 392 1 159 7.37e-61 194
MS.gene032373.t1 MTR_3g111150 53.631 179 57 2 8 186 1 153 4.15e-56 182
MS.gene032373.t1 MTR_3g102870 58.710 155 64 0 197 351 3 157 2.09e-55 180
MS.gene032373.t1 MTR_3g100990 61.832 131 48 1 6 136 5 133 3.05e-44 160
MS.gene032373.t1 MTR_4g093550 61.290 93 32 2 5 97 5 93 2.05e-25 99.4
MS.gene032373.t1 MTR_6g046890 59.155 71 26 1 29 99 20 87 2.25e-18 81.3
MS.gene032373.t1 MTR_3g101140 59.701 67 27 0 325 391 48 114 2.23e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032373.t1 AT1G47710 50.382 393 181 5 6 391 5 390 3.14e-134 390
MS.gene032373.t1 AT1G47710 50.382 393 181 5 6 391 32 417 7.49e-134 390
MS.gene032373.t1 AT3G45220 44.162 394 203 5 6 390 5 390 4.61e-115 341
MS.gene032373.t1 AT2G25240 46.272 389 194 8 6 390 5 382 1.23e-112 335
MS.gene032373.t1 AT2G26390 44.949 396 193 8 6 390 5 386 1.90e-107 322
MS.gene032373.t1 AT1G64030 43.445 389 194 5 6 390 5 371 4.55e-99 300
MS.gene032373.t1 AT1G62170 42.359 373 175 5 29 390 88 431 1.84e-96 295
MS.gene032373.t1 AT2G14540 42.526 388 197 5 6 390 33 397 1.52e-95 291
MS.gene032373.t1 AT2G35580 43.094 362 176 8 36 390 33 371 7.05e-93 283
MS.gene032373.t1 AT1G62170 38.916 406 175 6 29 390 88 464 3.09e-89 277
MS.gene032373.t1 AT1G64010 44.091 220 96 5 173 390 1 195 2.05e-56 184
MS.gene032373.t1 AT1G64010 43.415 205 89 5 188 390 2 181 2.00e-49 165
MS.gene032373.t1 AT1G62160 41.530 183 81 5 210 390 60 218 3.10e-36 132
MS.gene032373.t1 AT1G63280 55.932 118 48 2 129 244 5 120 4.23e-35 125
MS.gene032373.t1 AT1G51330 49.107 112 54 1 130 238 29 140 1.24e-24 100
MS.gene032373.t1 AT1G64020 33.036 112 72 3 13 123 12 121 5.05e-13 65.9

Find 82 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTATACTTTAA+AGG 0.146562 8.2:+48871351 MS.gene032373:CDS
CCGAAATTCAAGATTTCTTT+TGG 0.171353 8.2:+48871681 MS.gene032373:CDS
TCTGGAACCATACTCTTTAT+TGG 0.177113 8.2:+48871975 MS.gene032373:CDS
CCTTCGTTGGCTTTCCTTAA+TGG 0.196609 8.2:+48870880 MS.gene032373:CDS
TGACAAAAGAAGCAAATTTA+TGG 0.225380 8.2:+48871250 MS.gene032373:CDS
AGCTTCCGAATCTAAGTTCT+TGG 0.253184 8.2:+48871611 MS.gene032373:CDS
TTGTCTTCACCTTGCGTATA+AGG 0.282322 8.2:-48871519 None:intergenic
AGCCTATGGGGATAGCTATA+TGG 0.293869 8.2:+48871860 MS.gene032373:CDS
CTGGAACCATACTCTTTATT+GGG 0.301041 8.2:+48871976 MS.gene032373:CDS
GGTTTCTTTGTATTCTTGTT+TGG 0.323549 8.2:-48870677 None:intergenic
TAGTGGAAGTTGGTGCCTTC+AGG 0.326051 8.2:+48871655 MS.gene032373:CDS
GAAATATGTCGGACACATAA+AGG 0.333781 8.2:-48871800 None:intergenic
CCAAAAGAAATCTTGAATTT+CGG 0.337465 8.2:-48871681 None:intergenic
CAGTATATCAGTGTTCTTGA+TGG 0.364509 8.2:+48871477 MS.gene032373:CDS
GTTCAACCCACATACCATTA+AGG 0.368568 8.2:-48870894 None:intergenic
CACTTGCCCAATAAAGAGTA+TGG 0.383332 8.2:-48871982 None:intergenic
AACACGATGTGGAGTGATAA+TGG 0.393232 8.2:-48870715 None:intergenic
GCCTATGGGGATAGCTATAT+GGG 0.397587 8.2:+48871861 MS.gene032373:CDS
TGGCTTTCCTTAATGGTATG+TGG 0.399840 8.2:+48870887 MS.gene032373:CDS
CTCTCCAATGCTGCTCCTGC+CGG 0.400280 8.2:+48870853 MS.gene032373:CDS
GTCAAAGCTCCTTCGGAGAA+AGG 0.403461 8.2:-48871747 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.410392 8.2:+48871564 MS.gene032373:CDS
TTGTTTGGAGAACAAATGTT+TGG 0.415802 8.2:-48870662 None:intergenic
CAAGCTTCCTCACGAATTAG+TGG 0.418068 8.2:+48871638 MS.gene032373:CDS
AGCAATATTAGCTTTGAAAT+CGG 0.420013 8.2:-48870959 None:intergenic
GACAAAAGAAGCAAATTTAT+GGG 0.422156 8.2:+48871251 MS.gene032373:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 8.2:+48871957 MS.gene032373:CDS
TCCTCCGGCAGGAGCAGCAT+TGG 0.439334 8.2:-48870857 None:intergenic
TTTATTGAAGTAAATGAAGA+AGG 0.453378 8.2:+48871831 MS.gene032373:CDS
GTCATGAAGGGAACCTTGAC+CGG 0.453881 8.2:-48871441 None:intergenic
CATCTCATCGGTGGTCATGA+AGG 0.474802 8.2:-48871454 None:intergenic
GAAGAAGGTACCGAAGCCTA+TGG 0.478272 8.2:+48871846 MS.gene032373:CDS
GTGTTCCAAGAACTTAGATT+CGG 0.487041 8.2:-48871616 None:intergenic
ATAGCTATCCCCATAGGCTT+CGG 0.489239 8.2:-48871856 None:intergenic
CAAAGAAACCTTGGTTAGGT+TGG 0.494142 8.2:-48870632 None:intergenic
ATCATCGCTGCTGGCTCTGA+AGG 0.496680 8.2:+48870742 MS.gene032373:CDS
GTGTTGAGCATCATCGCTGC+TGG 0.496733 8.2:+48870733 MS.gene032373:CDS
TTTCCGTGGATTTGGATTGA+AGG 0.501160 8.2:-48870792 None:intergenic
TGGTCAAAGAAACCTTGGTT+AGG 0.502434 8.2:-48870636 None:intergenic
AGGAGCAGCATTGGAGAGCA+CGG 0.507039 8.2:-48870848 None:intergenic
GGCTTTCCTTAATGGTATGT+GGG 0.508630 8.2:+48870888 MS.gene032373:CDS
TCCTGCCGGAGGACCTTCGT+TGG 0.508638 8.2:+48870867 MS.gene032373:CDS
GAAAGCCAACGAAGGTCCTC+CGG 0.516566 8.2:-48870872 None:intergenic
AAGAAGGTACCGAAGCCTAT+GGG 0.518386 8.2:+48871847 MS.gene032373:CDS
GCCAACGAAGGTCCTCCGGC+AGG 0.525135 8.2:-48870868 None:intergenic
GGCGATGGTCAAAGAAACCT+TGG 0.531986 8.2:-48870641 None:intergenic
TGCATTTGCAAAGATGAGGT+TGG 0.533879 8.2:-48871337 None:intergenic
AAAAGACTTGTGAAATATGT+CGG 0.536698 8.2:-48871811 None:intergenic
CTTGAATTTCGGAATCCTGA+AGG 0.538497 8.2:-48871670 None:intergenic
CTTTAAAGGAGTGTGGAAAG+AGG 0.539924 8.2:+48871365 MS.gene032373:CDS
GTTAAACTATTAAATGACTC+AGG 0.540790 8.2:-48871315 None:intergenic
TCCAATGCTGCTCCTGCCGG+AGG 0.541408 8.2:+48870856 MS.gene032373:CDS
ATTCCTTCAATCCAAATCCA+CGG 0.547231 8.2:+48870789 MS.gene032373:CDS
CTACAAGATCATTTGTCAAG+AGG 0.553832 8.2:-48872011 None:intergenic
TCTCAATGGTAGCCCGGTCA+AGG 0.556970 8.2:+48871428 MS.gene032373:CDS
TCACATTCTCAATGGTAGCC+CGG 0.557863 8.2:+48871422 MS.gene032373:CDS
CTTCGTCTTCCTTATACGCA+AGG 0.561814 8.2:+48871510 MS.gene032373:CDS
CCTCACGAATTAGTGGAAGT+TGG 0.563985 8.2:+48871645 MS.gene032373:CDS
TTCAGTTGATTTCGTTAACA+AGG 0.566863 8.2:+48870981 MS.gene032373:CDS
CACTATACTTTAAAGGAGTG+TGG 0.566946 8.2:+48871358 MS.gene032373:CDS
ACTGATATGCTAAAAGAGCT+AGG 0.568471 8.2:+48871714 MS.gene032373:CDS
ATCTCATCGGTGGTCATGAA+GGG 0.572965 8.2:-48871453 None:intergenic
GGAGAACAAATGTTTGGCGA+TGG 0.575181 8.2:-48870656 None:intergenic
TCATGAAGGGAACCTTGACC+GGG 0.575904 8.2:-48871440 None:intergenic
TAATGGCGAAAACACAACAT+TGG 0.592596 8.2:-48870698 None:intergenic
TTTATCAGTGGCGGAGTACG+AGG 0.593449 8.2:-48871906 None:intergenic
CGATGATGCTCAACACGATG+TGG 0.616053 8.2:-48870726 None:intergenic
ACTGATATACTGCATCTCAT+CGG 0.622666 8.2:-48871466 None:intergenic
CCCCATATAGCTATCCCCAT+AGG 0.626236 8.2:-48871862 None:intergenic
ATAGTGCATTTGCAAAGATG+AGG 0.626715 8.2:-48871341 None:intergenic
GCTACGAAGTTTATCAGTGG+CGG 0.644094 8.2:-48871915 None:intergenic
GATATACTGCATCTCATCGG+TGG 0.647892 8.2:-48871463 None:intergenic
CACGGAGGAAACAAGCTGAG+AGG 0.674325 8.2:-48870830 None:intergenic
AGAAGGTACCGAAGCCTATG+GGG 0.675963 8.2:+48871848 MS.gene032373:CDS
ATCAATCACCAACCTAACCA+AGG 0.679210 8.2:+48870624 MS.gene032373:CDS
CCATTAAGGAAAGCCAACGA+AGG 0.699382 8.2:-48870880 None:intergenic
CCAACTTCCACTAATTCGTG+AGG 0.701450 8.2:-48871645 None:intergenic
TCAGCTACGAAGTTTATCAG+TGG 0.706881 8.2:-48871918 None:intergenic
CCTATGGGGATAGCTATATG+GGG 0.715773 8.2:+48871862 MS.gene032373:CDS
AGCAGCATTGGAGAGCACGG+AGG 0.716416 8.2:-48870845 None:intergenic
CTTGCGTATAAGGAAGACGA+AGG 0.726910 8.2:-48871509 None:intergenic
TATGCTAAAAGAGCTAGGCG+TGG 0.728186 8.2:+48871719 MS.gene032373:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAACATAAAATTAA+TGG - chr8.2:48871211-48871230 None:intergenic 10.0%
!!! TTTTATTTGGTATTTTATTT+TGG + chr8.2:48871062-48871081 MS.gene032373:intron 10.0%
!! ATTATTTGATAAAAGACTTA+GGG + chr8.2:48871101-48871120 MS.gene032373:intron 15.0%
!! TATTATTTGATAAAAGACTT+AGG + chr8.2:48871100-48871119 MS.gene032373:intron 15.0%
!!! TATGTTTGATATTGTTTTAA+AGG + chr8.2:48871218-48871237 MS.gene032373:intron 15.0%
!! CTTCAAGATAAATAAAAAGA+AGG - chr8.2:48871023-48871042 None:intergenic 20.0%
!! TTTATTGAAGTAAATGAAGA+AGG + chr8.2:48871831-48871850 MS.gene032373:CDS 20.0%
!!! AAAATAATAAAAGCACGATA+TGG - chr8.2:48871046-48871065 None:intergenic 20.0%
!!! CGTGCTTTTATTATTTTATT+TGG + chr8.2:48871049-48871068 MS.gene032373:intron 20.0%
! AAAAGACTTGTGAAATATGT+CGG - chr8.2:48871814-48871833 None:intergenic 25.0%
! AAGAACAAAGATCGATATTT+AGG - chr8.2:48871137-48871156 None:intergenic 25.0%
! CCAAAAGAAATCTTGAATTT+CGG - chr8.2:48871684-48871703 None:intergenic 25.0%
! GACAAAAGAAGCAAATTTAT+GGG + chr8.2:48871251-48871270 MS.gene032373:CDS 25.0%
! GTTAAACTATTAAATGACTC+AGG - chr8.2:48871318-48871337 None:intergenic 25.0%
! TGACAAAAGAAGCAAATTTA+TGG + chr8.2:48871250-48871269 MS.gene032373:CDS 25.0%
!! CGAAATTCAAGATTTCTTTT+GGG + chr8.2:48871682-48871701 MS.gene032373:CDS 25.0%
!! TATGATTTTCACATTCTCAA+TGG + chr8.2:48871414-48871433 MS.gene032373:CDS 25.0%
!!! AGCAATATTAGCTTTGAAAT+CGG - chr8.2:48870962-48870981 None:intergenic 25.0%
CTCTGATCAAAAACAAGAAA+GGG - chr8.2:48871947-48871966 None:intergenic 30.0%
GCAAATGCACTATACTTTAA+AGG + chr8.2:48871351-48871370 MS.gene032373:CDS 30.0%
GGTTTCTTTGTATTCTTGTT+TGG - chr8.2:48870680-48870699 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG - chr8.2:48871948-48871967 None:intergenic 30.0%
TTGTTTGGAGAACAAATGTT+TGG - chr8.2:48870665-48870684 None:intergenic 30.0%
! CCGAAATTCAAGATTTCTTT+TGG + chr8.2:48871681-48871700 MS.gene032373:CDS 30.0%
! TTCAGTTGATTTCGTTAACA+AGG + chr8.2:48870981-48871000 MS.gene032373:CDS 30.0%
!!! GAAAGAACTTGTTTTTGTGT+AGG - chr8.2:48870769-48870788 None:intergenic 30.0%
ACTGATATACTGCATCTCAT+CGG - chr8.2:48871469-48871488 None:intergenic 35.0%
ACTGATATGCTAAAAGAGCT+AGG + chr8.2:48871714-48871733 MS.gene032373:CDS 35.0%
ATAGTGCATTTGCAAAGATG+AGG - chr8.2:48871344-48871363 None:intergenic 35.0%
ATTCCTTCAATCCAAATCCA+CGG + chr8.2:48870789-48870808 MS.gene032373:CDS 35.0%
CAGTATATCAGTGTTCTTGA+TGG + chr8.2:48871477-48871496 MS.gene032373:CDS 35.0%
CTGGAACCATACTCTTTATT+GGG + chr8.2:48871976-48871995 MS.gene032373:CDS 35.0%
GAAATATGTCGGACACATAA+AGG - chr8.2:48871803-48871822 None:intergenic 35.0%
GTGTTCCAAGAACTTAGATT+CGG - chr8.2:48871619-48871638 None:intergenic 35.0%
TAATGGCGAAAACACAACAT+TGG - chr8.2:48870701-48870720 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG + chr8.2:48871957-48871976 MS.gene032373:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG + chr8.2:48871564-48871583 MS.gene032373:CDS 35.0%
! AAAGTCGTTTAGATTTTCCG+TGG - chr8.2:48870809-48870828 None:intergenic 35.0%
! AACAATCCATCTTTTGCATC+AGG - chr8.2:48871573-48871592 None:intergenic 35.0%
! CACTATACTTTAAAGGAGTG+TGG + chr8.2:48871358-48871377 MS.gene032373:CDS 35.0%
! CATTTTTGTCAAAGCTCCTT+CGG - chr8.2:48871757-48871776 None:intergenic 35.0%
! GTTTAGATTTTCCGTGGATT+TGG - chr8.2:48870803-48870822 None:intergenic 35.0%
! TCTGGAACCATACTCTTTAT+TGG + chr8.2:48871975-48871994 MS.gene032373:CDS 35.0%
AACACGATGTGGAGTGATAA+TGG - chr8.2:48870718-48870737 None:intergenic 40.0%
AGATCGATATTTAGGCCACT+TGG - chr8.2:48871129-48871148 None:intergenic 40.0%
AGCTTCCGAATCTAAGTTCT+TGG + chr8.2:48871611-48871630 MS.gene032373:CDS 40.0%
ATCAATCACCAACCTAACCA+AGG + chr8.2:48870624-48870643 MS.gene032373:CDS 40.0%
CAAAGAAACCTTGGTTAGGT+TGG - chr8.2:48870635-48870654 None:intergenic 40.0%
CACTTGCCCAATAAAGAGTA+TGG - chr8.2:48871985-48872004 None:intergenic 40.0%
CTTGAATTTCGGAATCCTGA+AGG - chr8.2:48871673-48871692 None:intergenic 40.0%
GGCTTTCCTTAATGGTATGT+GGG + chr8.2:48870888-48870907 MS.gene032373:CDS 40.0%
GTTCAACCCACATACCATTA+AGG - chr8.2:48870897-48870916 None:intergenic 40.0%
TCAGCTACGAAGTTTATCAG+TGG - chr8.2:48871921-48871940 None:intergenic 40.0%
TGCATTTGCAAAGATGAGGT+TGG - chr8.2:48871340-48871359 None:intergenic 40.0%
TGGCTTTCCTTAATGGTATG+TGG + chr8.2:48870887-48870906 MS.gene032373:CDS 40.0%
TGGGCTGAAAAAGTGACAAA+TGG + chr8.2:48871270-48871289 MS.gene032373:CDS 40.0%
TGGTCAAAGAAACCTTGGTT+AGG - chr8.2:48870639-48870658 None:intergenic 40.0%
TTGTCTTCACCTTGCGTATA+AGG - chr8.2:48871522-48871541 None:intergenic 40.0%
TTTCCGTGGATTTGGATTGA+AGG - chr8.2:48870795-48870814 None:intergenic 40.0%
! AAAAGACTTAGGGTACCAAG+TGG + chr8.2:48871111-48871130 MS.gene032373:intron 40.0%
! AATCGGTAGCCACGATTTTT+CGG - chr8.2:48870945-48870964 None:intergenic 40.0%
! AGGAGCTTTGACAAAAATGG+TGG + chr8.2:48871758-48871777 MS.gene032373:CDS 40.0%
! CGAAGGAGCTTTGACAAAAA+TGG + chr8.2:48871755-48871774 MS.gene032373:CDS 40.0%
! CTTTAAAGGAGTGTGGAAAG+AGG + chr8.2:48871365-48871384 MS.gene032373:CDS 40.0%
ACCTTCCTTCCGAAAAATCG+TGG + chr8.2:48870933-48870952 MS.gene032373:CDS 45.0%
AGCCTATGGGGATAGCTATA+TGG + chr8.2:48871860-48871879 MS.gene032373:CDS 45.0%
ATAGCTATCCCCATAGGCTT+CGG - chr8.2:48871859-48871878 None:intergenic 45.0%
ATCTCATCGGTGGTCATGAA+GGG - chr8.2:48871456-48871475 None:intergenic 45.0%
CAAGCTTCCTCACGAATTAG+TGG + chr8.2:48871638-48871657 MS.gene032373:CDS 45.0%
CCAACTTCCACTAATTCGTG+AGG - chr8.2:48871648-48871667 None:intergenic 45.0%
CCATTAAGGAAAGCCAACGA+AGG - chr8.2:48870883-48870902 None:intergenic 45.0%
CCTATGGGGATAGCTATATG+GGG + chr8.2:48871862-48871881 MS.gene032373:CDS 45.0%
CCTCACGAATTAGTGGAAGT+TGG + chr8.2:48871645-48871664 MS.gene032373:CDS 45.0%
CTTCGTCTTCCTTATACGCA+AGG + chr8.2:48871510-48871529 MS.gene032373:CDS 45.0%
CTTGCGTATAAGGAAGACGA+AGG - chr8.2:48871512-48871531 None:intergenic 45.0%
GATATACTGCATCTCATCGG+TGG - chr8.2:48871466-48871485 None:intergenic 45.0%
GCCTATGGGGATAGCTATAT+GGG + chr8.2:48871861-48871880 MS.gene032373:CDS 45.0%
GCTACGAAGTTTATCAGTGG+CGG - chr8.2:48871918-48871937 None:intergenic 45.0%
GGAGAACAAATGTTTGGCGA+TGG - chr8.2:48870659-48870678 None:intergenic 45.0%
TATGCTAAAAGAGCTAGGCG+TGG + chr8.2:48871719-48871738 MS.gene032373:CDS 45.0%
TCACATTCTCAATGGTAGCC+CGG + chr8.2:48871422-48871441 MS.gene032373:CDS 45.0%
!! AAGAAGGTACCGAAGCCTAT+GGG + chr8.2:48871847-48871866 MS.gene032373:CDS 45.0%
!! CCTTCGTTGGCTTTCCTTAA+TGG + chr8.2:48870880-48870899 MS.gene032373:CDS 45.0%
!! GTGGTTTTACCTTTCTCCGA+AGG + chr8.2:48871738-48871757 MS.gene032373:CDS 45.0%
CATCTCATCGGTGGTCATGA+AGG - chr8.2:48871457-48871476 None:intergenic 50.0%
CCCCATATAGCTATCCCCAT+AGG - chr8.2:48871865-48871884 None:intergenic 50.0%
CGATGATGCTCAACACGATG+TGG - chr8.2:48870729-48870748 None:intergenic 50.0%
GGCGATGGTCAAAGAAACCT+TGG - chr8.2:48870644-48870663 None:intergenic 50.0%
GTCAAAGCTCCTTCGGAGAA+AGG - chr8.2:48871750-48871769 None:intergenic 50.0%
GTCATGAAGGGAACCTTGAC+CGG - chr8.2:48871444-48871463 None:intergenic 50.0%
TCATGAAGGGAACCTTGACC+GGG - chr8.2:48871443-48871462 None:intergenic 50.0%
! TTTATCAGTGGCGGAGTACG+AGG - chr8.2:48871909-48871928 None:intergenic 50.0%
!! AGAAGGTACCGAAGCCTATG+GGG + chr8.2:48871848-48871867 MS.gene032373:CDS 50.0%
!! GAAGAAGGTACCGAAGCCTA+TGG + chr8.2:48871846-48871865 MS.gene032373:CDS 50.0%
!! GCCACGATTTTTCGGAAGGA+AGG - chr8.2:48870937-48870956 None:intergenic 50.0%
!! GGTAGCCACGATTTTTCGGA+AGG - chr8.2:48870941-48870960 None:intergenic 50.0%
!! TAGTGGAAGTTGGTGCCTTC+AGG + chr8.2:48871655-48871674 MS.gene032373:CDS 50.0%
CACGGAGGAAACAAGCTGAG+AGG - chr8.2:48870833-48870852 None:intergenic 55.0%
GAAAGCCAACGAAGGTCCTC+CGG - chr8.2:48870875-48870894 None:intergenic 55.0%
GTGTTGAGCATCATCGCTGC+TGG + chr8.2:48870733-48870752 MS.gene032373:CDS 55.0%
TCTCAATGGTAGCCCGGTCA+AGG + chr8.2:48871428-48871447 MS.gene032373:CDS 55.0%
! AGGAGCAGCATTGGAGAGCA+CGG - chr8.2:48870851-48870870 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+AGG + chr8.2:48870742-48870761 MS.gene032373:CDS 55.0%
CTCTCCAATGCTGCTCCTGC+CGG + chr8.2:48870853-48870872 MS.gene032373:CDS 60.0%
! AGCAGCATTGGAGAGCACGG+AGG - chr8.2:48870848-48870867 None:intergenic 60.0%
TCCAATGCTGCTCCTGCCGG+AGG + chr8.2:48870856-48870875 MS.gene032373:CDS 65.0%
TCCTCCGGCAGGAGCAGCAT+TGG - chr8.2:48870860-48870879 None:intergenic 65.0%
TCCTGCCGGAGGACCTTCGT+TGG + chr8.2:48870867-48870886 MS.gene032373:CDS 65.0%
GCCAACGAAGGTCCTCCGGC+AGG - chr8.2:48870871-48870890 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 48870607 48872025 48870607 ID=MS.gene032373
chr8.2 mRNA 48870607 48872025 48870607 ID=MS.gene032373.t1;Parent=MS.gene032373
chr8.2 exon 48870607 48871002 48870607 ID=MS.gene032373.t1.exon1;Parent=MS.gene032373.t1
chr8.2 CDS 48870607 48871002 48870607 ID=cds.MS.gene032373.t1;Parent=MS.gene032373.t1
chr8.2 exon 48871240 48872025 48871240 ID=MS.gene032373.t1.exon2;Parent=MS.gene032373.t1
chr8.2 CDS 48871240 48872025 48871240 ID=cds.MS.gene032373.t1;Parent=MS.gene032373.t1
Gene Sequence

>MS.gene032373

ATGAATTTTCAGAGCGAATCAATCACCAACCTAACCAAGGTTTCTTTGACCATCGCCAAACATTTGTTCTCCAAACAAGAATACAAAGAAACCAATGTTGTGTTTTCGCCATTATCACTCCACATCGTGTTGAGCATCATCGCTGCTGGCTCTGAAGGTCCTACACAAAAACAAGTTCTTTCATTCCTTCAATCCAAATCCACGGAAAATCTAAACGACTTTGCCTCTCAGCTTGTTTCCTCCGTGCTCTCCAATGCTGCTCCTGCCGGAGGACCTTCGTTGGCTTTCCTTAATGGTATGTGGGTTGAACAGACACTTTCTCTTGAACCTTCCTTCCGAAAAATCGTGGCTACCGATTTCAAAGCTAATATTGCTTCAGTTGATTTCGTTAACAAGGTAAAATAATCTACAATCCTTCTTTTTATTTATCTTGAAGCCATATCGTGCTTTTATTATTTTATTTGGTATTTTATTTTGGTTGCTAACACTTCAATATTATTTGATAAAAGACTTAGGGTACCAAGTGGCCTAAATATCGATCTTTGTTCTTGTTTCATTCTATTAAAATAAGTTGTTACTAATTTCAATTGATCATTTTGCACCATTAATTTTATGTTTGATATTGTTTTAAAGGCTCTCGAAGTGACAAAAGAAGCAAATTTATGGGCTGAAAAAGTGACAAATGGTCTTATAAAAAATCTACTTTCACCTGAGTCATTTAATAGTTTAACCAACCTCATCTTTGCAAATGCACTATACTTTAAAGGAGTGTGGAAAGAGGAGTTTGATACTTCAGATACAAGAGACTATGATTTTCACATTCTCAATGGTAGCCCGGTCAAGGTTCCCTTCATGACCACCGATGAGATGCAGTATATCAGTGTTCTTGATGGTTTTAAAGTCCTTCGTCTTCCTTATACGCAAGGTGAAGACAAACGTCGATTCTCTATTTACTTTTTTCTTCCTGATGCAAAAGATGGATTGTTAGCTTTGATTAAGAAGCTAGCTTCCGAATCTAAGTTCTTGGAACACAAGCTTCCTCACGAATTAGTGGAAGTTGGTGCCTTCAGGATTCCGAAATTCAAGATTTCTTTTGGGCTTGAATGTACTGATATGCTAAAAGAGCTAGGCGTGGTTTTACCTTTCTCCGAAGGAGCTTTGACAAAAATGGTGGACTCTCGTATTGCTCAAAACCTTTATGTGTCCGACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGTACCGAAGCCTATGGGGATAGCTATATGGGGACAAGTTTGTGTGATGATTCTCCTCGTACTCCGCCACTGATAAACTTCGTAGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACCATACTCTTTATTGGGCAAGTGCTCAATCCTCTTGACAAATGA
Protein sequence

>MS.gene032373.t1

MNFQSESITNLTKVSLTIAKHLFSKQEYKETNVVFSPLSLHIVLSIIAAGSEGPTQKQVLSFLQSKSTENLNDFASQLVSSVLSNAAPAGGPSLAFLNGMWVEQTLSLEPSFRKIVATDFKANIASVDFVNKALEVTKEANLWAEKVTNGLIKNLLSPESFNSLTNLIFANALYFKGVWKEEFDTSDTRDYDFHILNGSPVKVPFMTTDEMQYISVLDGFKVLRLPYTQGEDKRRFSIYFFLPDAKDGLLALIKKLASESKFLEHKLPHELVEVGAFRIPKFKISFGLECTDMLKELGVVLPFSEGALTKMVDSRIAQNLYVSDIFHKSFIEVNEEGTEAYGDSYMGTSLCDDSPRTPPLINFVADHPFLFLIREDLSGTILFIGQVLNPLDK