AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032376

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032376.t1 MTR_8g461160 92.386 394 30 0 1 394 1 394 0.0 722
MS.gene032376.t1 MTR_3g101180 70.750 400 111 2 1 394 1 400 0.0 565
MS.gene032376.t1 MTR_3g101010 68.475 387 118 2 6 392 5 387 0.0 521
MS.gene032376.t1 MTR_7g451890 66.327 392 132 0 2 393 10 401 0.0 516
MS.gene032376.t1 MTR_7g047780 65.816 392 134 0 2 393 10 401 0.0 514
MS.gene032376.t1 MTR_7g050750 65.561 392 135 0 2 393 4 395 0.0 510
MS.gene032376.t1 MTR_3g018740 66.923 390 122 3 6 394 5 388 0.0 508
MS.gene032376.t1 MTR_4g045707 64.706 391 132 2 1 391 1 385 3.40e-180 506
MS.gene032376.t1 MTR_7g050810 64.286 392 140 0 2 393 12 403 4.28e-175 494
MS.gene032376.t1 MTR_3g101130 61.480 392 146 2 1 392 1 387 2.72e-173 489
MS.gene032376.t1 MTR_3g101030 61.461 397 133 4 12 392 35 427 2.44e-170 483
MS.gene032376.t1 MTR_8g027395 62.791 387 136 2 6 392 17 395 8.16e-170 480
MS.gene032376.t1 MTR_3g048000 60.714 392 125 5 4 392 25 390 4.84e-162 460
MS.gene032376.t1 MTR_8g027420 60.465 387 134 3 6 392 6 373 3.53e-159 452
MS.gene032376.t1 MTR_4g088525 61.433 363 134 1 30 392 11 367 1.35e-158 451
MS.gene032376.t1 MTR_2g046030 58.524 393 150 4 6 394 5 388 2.76e-153 438
MS.gene032376.t1 MTR_3g015620 60.660 394 119 6 6 393 16 379 3.35e-153 437
MS.gene032376.t1 MTR_2g045980 58.524 393 150 4 6 394 5 388 5.44e-152 435
MS.gene032376.t1 MTR_3g101050 59.949 392 136 7 4 394 27 398 7.36e-151 432
MS.gene032376.t1 MTR_4g088535 57.772 386 139 4 4 389 5 366 7.49e-148 424
MS.gene032376.t1 MTR_3g101200 55.443 395 147 5 1 394 26 392 3.00e-137 397
MS.gene032376.t1 MTR_3g101190 55.890 365 92 3 30 392 13 310 1.06e-130 378
MS.gene032376.t1 MTR_3g102920 53.102 403 132 7 4 392 49 408 1.34e-130 381
MS.gene032376.t1 MTR_7g050830 57.233 318 105 2 2 299 12 318 4.84e-122 356
MS.gene032376.t1 MTR_3g100995 64.729 258 86 2 136 393 11 263 1.68e-115 337
MS.gene032376.t1 MTR_3g015760 66.792 265 78 4 132 393 23 280 7.64e-110 323
MS.gene032376.t1 MTR_3g018747 62.406 266 78 6 132 394 9 255 3.26e-104 308
MS.gene032376.t1 MTR_3g100010 52.903 310 98 3 33 309 42 336 6.13e-103 308
MS.gene032376.t1 MTR_3g100520 60.811 222 70 4 173 392 1 207 2.86e-86 261
MS.gene032376.t1 MTR_3g111160 60.811 222 81 3 173 392 1 218 7.00e-83 253
MS.gene032376.t1 MTR_3g114310 40.759 395 207 11 12 391 25 407 4.52e-81 254
MS.gene032376.t1 MTR_3g101110 57.322 239 74 3 132 368 68 280 2.55e-79 246
MS.gene032376.t1 MTR_3g099970 62.755 196 56 2 132 327 20 198 1.56e-78 241
MS.gene032376.t1 MTR_2g046410 58.571 210 79 2 189 394 144 349 3.27e-76 240
MS.gene032376.t1 MTR_3g101150 68.323 161 41 2 238 392 1 157 4.40e-69 215
MS.gene032376.t1 MTR_3g101020 55.851 188 54 2 206 393 1 159 1.89e-60 193
MS.gene032376.t1 MTR_3g111150 53.631 179 57 2 8 186 1 153 2.05e-56 183
MS.gene032376.t1 MTR_3g102870 58.710 155 64 0 197 351 3 157 7.50e-56 181
MS.gene032376.t1 MTR_3g100990 56.849 146 61 1 6 151 5 148 1.02e-43 159
MS.gene032376.t1 MTR_4g093550 61.290 93 32 2 5 97 5 93 2.01e-25 99.4
MS.gene032376.t1 MTR_6g046890 59.155 71 26 1 29 99 20 87 1.50e-18 82.0
MS.gene032376.t1 MTR_3g101140 63.235 68 24 1 325 392 48 114 1.65e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032376.t1 AT1G47710 51.157 389 185 4 6 392 5 390 4.49e-136 394
MS.gene032376.t1 AT1G47710 51.157 389 185 4 6 392 32 417 2.33e-135 394
MS.gene032376.t1 AT3G45220 44.810 395 200 5 6 391 5 390 6.17e-118 348
MS.gene032376.t1 AT2G25240 45.897 390 195 8 6 391 5 382 5.65e-113 335
MS.gene032376.t1 AT2G26390 45.000 400 188 8 6 391 5 386 2.47e-110 329
MS.gene032376.t1 AT1G64030 43.445 389 195 4 6 391 5 371 7.17e-101 305
MS.gene032376.t1 AT1G62170 42.513 374 174 5 29 391 88 431 1.80e-98 300
MS.gene032376.t1 AT2G14540 42.416 389 197 5 6 391 33 397 5.15e-97 295
MS.gene032376.t1 AT2G35580 42.700 363 177 8 36 391 33 371 1.12e-93 286
MS.gene032376.t1 AT1G62170 39.066 407 174 6 29 391 88 464 2.83e-91 283
MS.gene032376.t1 AT1G64010 44.344 221 95 5 173 391 1 195 1.86e-57 186
MS.gene032376.t1 AT1G64010 43.689 206 88 5 188 391 2 181 1.28e-50 168
MS.gene032376.t1 AT1G62160 40.299 201 90 6 196 391 43 218 1.78e-37 135
MS.gene032376.t1 AT1G63280 57.627 118 46 2 129 244 5 120 4.62e-37 131
MS.gene032376.t1 AT1G51330 50.000 112 53 1 130 238 29 140 6.81e-26 103
MS.gene032376.t1 AT1G64020 32.143 112 73 3 13 123 12 121 1.41e-12 64.7

Find 83 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTATACTTTAA+AGG 0.146562 8.2:+48951411 MS.gene032376:CDS
CCGAAATTCAAGATTTCTTT+TGG 0.171353 8.2:+48951741 MS.gene032376:CDS
TCTGGAACCATACTCTTTAT+TGG 0.177113 8.2:+48952038 MS.gene032376:CDS
CCTTCGTTGGCTTTCCTTAA+TGG 0.196609 8.2:+48950940 MS.gene032376:CDS
TGACAAAAGAAGCAAATTTA+TGG 0.225380 8.2:+48951310 MS.gene032376:CDS
AGCTTCCGAATCTAAGTTCT+TGG 0.253184 8.2:+48951671 MS.gene032376:CDS
TTGTCTTCACCTTGCGTATA+AGG 0.282322 8.2:-48951579 None:intergenic
AGCCTATGGGGAAAGCTATA+TGG 0.293869 8.2:+48951920 MS.gene032376:CDS
CTGGAACCATACTCTTTATT+GGG 0.301041 8.2:+48952039 MS.gene032376:CDS
GGTTTCTTTGTATTCTTGTT+TGG 0.323549 8.2:-48950737 None:intergenic
TAGTGGAAGTTGGTGCCTTC+AGG 0.326051 8.2:+48951715 MS.gene032376:CDS
GAAATATGTCGGACACATAA+AGG 0.333781 8.2:-48951860 None:intergenic
CCAAAAGAAATCTTGAATTT+CGG 0.337465 8.2:-48951741 None:intergenic
CAGTATATCAGTGTTCTTGA+TGG 0.364509 8.2:+48951537 MS.gene032376:CDS
GTTCAACCCACATACCATTA+AGG 0.368568 8.2:-48950954 None:intergenic
CAAGCTTCCTCGCGAATTAG+TGG 0.375298 8.2:+48951698 MS.gene032376:CDS
CACTTGCCCAATAAAGAGTA+TGG 0.383332 8.2:-48952045 None:intergenic
AGCACGATGTGGAGCGATAA+TGG 0.391927 8.2:-48950775 None:intergenic
GCCTATGGGGAAAGCTATAT+GGG 0.398940 8.2:+48951921 MS.gene032376:CDS
TGGCTTTCCTTAATGGTATG+TGG 0.399840 8.2:+48950947 MS.gene032376:CDS
CTCTCCAATGCTGCTCCTGC+CGG 0.400280 8.2:+48950913 MS.gene032376:CDS
GTCAAAGCTCCTTCGGAGAA+AGG 0.403461 8.2:-48951807 None:intergenic
TTGTTTGGAGAACAAATGTT+TGG 0.415802 8.2:-48950722 None:intergenic
TTTCTTCCTGATGCTAAAGA+TGG 0.419334 8.2:+48951624 MS.gene032376:CDS
GACAAAAGAAGCAAATTTAT+GGG 0.422156 8.2:+48951311 MS.gene032376:CDS
GTCATGAAGGGAACCTTGAC+CGG 0.427666 8.2:-48951501 None:intergenic
TTGATCAGAGAAGATTTGTC+TGG 0.431879 8.2:+48952020 MS.gene032376:CDS
TCCTCCGGCAGGAGCAGCAT+TGG 0.439334 8.2:-48950917 None:intergenic
AACAATCCATCTTTAGCATC+AGG 0.451290 8.2:-48951630 None:intergenic
TTTATTGAAGTAAATGAAGA+AGG 0.453378 8.2:+48951891 MS.gene032376:CDS
ATAGCTTTCCCCATAGGCTT+CGG 0.456657 8.2:-48951916 None:intergenic
GTGCTGAGCATCATCGCTGC+TGG 0.468288 8.2:+48950793 MS.gene032376:CDS
TGATCAGCTACGAAGTTTAT+CGG 0.470382 8.2:-48951984 None:intergenic
GAAGAAGGTACCGAAGCCTA+TGG 0.478272 8.2:+48951906 MS.gene032376:CDS
GTGTTCCAAGAACTTAGATT+CGG 0.487041 8.2:-48951676 None:intergenic
CAAAGAAACCTTGGTTAGGT+TGG 0.494142 8.2:-48950692 None:intergenic
ATCATCGCTGCTGGCTCTGA+AGG 0.496680 8.2:+48950802 MS.gene032376:CDS
TTTCCGTGGATTTGGATTGA+AGG 0.501160 8.2:-48950852 None:intergenic
TGGTCAAAGAAACCTTGGTT+AGG 0.502434 8.2:-48950696 None:intergenic
AGGAGCAGCATTGGAGAGCA+CGG 0.507039 8.2:-48950908 None:intergenic
GGCTTTCCTTAATGGTATGT+GGG 0.508630 8.2:+48950948 MS.gene032376:CDS
TCCTGCCGGAGGACCTTCGT+TGG 0.508638 8.2:+48950927 MS.gene032376:CDS
AAGAAGGTACCGAAGCCTAT+GGG 0.511565 8.2:+48951907 MS.gene032376:CDS
GATATACTGCATCTCATAGC+TGG 0.512249 8.2:-48951523 None:intergenic
GAAAGCCAACGAAGGTCCTC+CGG 0.516566 8.2:-48950932 None:intergenic
GCCAACGAAGGTCCTCCGGC+AGG 0.525135 8.2:-48950928 None:intergenic
CATCTCATAGCTGGTCATGA+AGG 0.531770 8.2:-48951514 None:intergenic
GGCGATGGTCAAAGAAACCT+TGG 0.531986 8.2:-48950701 None:intergenic
TGCATTTGCAAAGATGAGGT+TGG 0.533879 8.2:-48951397 None:intergenic
CCCCATATAGCTTTCCCCAT+AGG 0.536633 8.2:-48951922 None:intergenic
AAAAGACTTGTGAAATATGT+CGG 0.536698 8.2:-48951871 None:intergenic
CTTGAATTTCGGAATCCTGA+AGG 0.538497 8.2:-48951730 None:intergenic
CTTTAAAGGAGTGTGGAAAG+AGG 0.539924 8.2:+48951425 MS.gene032376:CDS
GTTAAACTATTAAATGACTC+AGG 0.540790 8.2:-48951375 None:intergenic
TCCAATGCTGCTCCTGCCGG+AGG 0.541408 8.2:+48950916 MS.gene032376:CDS
ATTCCTTCAATCCAAATCCA+CGG 0.547231 8.2:+48950849 MS.gene032376:CDS
TCTCAATGGTAGCCCGGTCA+AGG 0.556970 8.2:+48951488 MS.gene032376:CDS
TCACATTCTCAATGGTAGCC+CGG 0.557863 8.2:+48951482 MS.gene032376:CDS
TAATGGTGAAAACACAACAT+TGG 0.559392 8.2:-48950758 None:intergenic
TCATGAAGGGAACCTTGACC+GGG 0.561329 8.2:-48951500 None:intergenic
CTTCGTCTTCCTTATACGCA+AGG 0.561814 8.2:+48951570 MS.gene032376:CDS
CTACAATATCACTTGTCAAG+AGG 0.566506 8.2:-48952074 None:intergenic
TTCAGTTGATTTCGTTAACA+AGG 0.566863 8.2:+48951041 MS.gene032376:CDS
CACTATACTTTAAAGGAGTG+TGG 0.566946 8.2:+48951418 MS.gene032376:CDS
ACTGATATGCTAAAAGAGCT+AGG 0.568471 8.2:+48951774 MS.gene032376:CDS
CCTCGCGAATTAGTGGAAGT+TGG 0.573383 8.2:+48951705 MS.gene032376:CDS
GGAGAACAAATGTTTGGCGA+TGG 0.575181 8.2:-48950716 None:intergenic
GCTACGAAGTTTATCGGTGG+CGG 0.590090 8.2:-48951978 None:intergenic
ATCTCATAGCTGGTCATGAA+GGG 0.593119 8.2:-48951513 None:intergenic
CGATGATGCTCAGCACGATG+TGG 0.607651 8.2:-48950786 None:intergenic
ATAGTGCATTTGCAAAGATG+AGG 0.626715 8.2:-48951401 None:intergenic
ATCGGTGGCGGAGTATCGTG+AGG 0.658590 8.2:-48951966 None:intergenic
AGAAGGTACCGAAGCCTATG+GGG 0.663955 8.2:+48951908 MS.gene032376:CDS
CACGGAGGAAACAAGCTGAG+AGG 0.674325 8.2:-48950890 None:intergenic
ATCAATCACCAACCTAACCA+AGG 0.679210 8.2:+48950684 MS.gene032376:CDS
CCATTAAGGAAAGCCAACGA+AGG 0.699382 8.2:-48950940 None:intergenic
CCAACTTCCACTAATTCGCG+AGG 0.703336 8.2:-48951705 None:intergenic
CCTATGGGGAAAGCTATATG+GGG 0.708108 8.2:+48951922 MS.gene032376:CDS
AGCAGCATTGGAGAGCACGG+AGG 0.716416 8.2:-48950905 None:intergenic
TCAGCTACGAAGTTTATCGG+TGG 0.717176 8.2:-48951981 None:intergenic
GGTGGCGGAGTATCGTGAGG+AGG 0.718563 8.2:-48951963 None:intergenic
CTTGCGTATAAGGAAGACGA+AGG 0.726910 8.2:-48951569 None:intergenic
TATGCTAAAAGAGCTAGGCG+TGG 0.728186 8.2:+48951779 MS.gene032376:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAACATAAAATTAA+CGG - chr8.2:48951271-48951290 None:intergenic 10.0%
!! ATTATTTGATAAAAGACTTA+GGG + chr8.2:48951161-48951180 MS.gene032376:intron 15.0%
!! CTTCAAGATAAATAAAAAAA+AGG - chr8.2:48951083-48951102 None:intergenic 15.0%
!! TATTATTTGATAAAAGACTT+AGG + chr8.2:48951160-48951179 MS.gene032376:intron 15.0%
!!! TATGTTTGATATTGTTTTAA+AGG + chr8.2:48951278-48951297 MS.gene032376:intron 15.0%
!!! TTTTATGTGGTATTTTATTT+TGG + chr8.2:48951122-48951141 MS.gene032376:intron 15.0%
!! TTTATTGAAGTAAATGAAGA+AGG + chr8.2:48951891-48951910 MS.gene032376:CDS 20.0%
!!! AAAATAATAAAAGCACGATA+TGG - chr8.2:48951106-48951125 None:intergenic 20.0%
!!! AGCAATATTAGTTTTGAAAT+CGG - chr8.2:48951022-48951041 None:intergenic 20.0%
! AAAAGACTTGTGAAATATGT+CGG - chr8.2:48951874-48951893 None:intergenic 25.0%
! AAGAACAAAGATCGATATTT+AGG - chr8.2:48951197-48951216 None:intergenic 25.0%
! CCAAAAGAAATCTTGAATTT+CGG - chr8.2:48951744-48951763 None:intergenic 25.0%
! GACAAAAGAAGCAAATTTAT+GGG + chr8.2:48951311-48951330 MS.gene032376:CDS 25.0%
! GTTAAACTATTAAATGACTC+AGG - chr8.2:48951378-48951397 None:intergenic 25.0%
! TGACAAAAGAAGCAAATTTA+TGG + chr8.2:48951310-48951329 MS.gene032376:CDS 25.0%
!! CGAAATTCAAGATTTCTTTT+GGG + chr8.2:48951742-48951761 MS.gene032376:CDS 25.0%
!! TATGATTTTCACATTCTCAA+TGG + chr8.2:48951474-48951493 MS.gene032376:CDS 25.0%
!!! CGTGCTTTTATTATTTTATG+TGG + chr8.2:48951109-48951128 MS.gene032376:intron 25.0%
CTCTGATCAAAAACAAGAAA+GGG - chr8.2:48952010-48952029 None:intergenic 30.0%
GCAAATGCACTATACTTTAA+AGG + chr8.2:48951411-48951430 MS.gene032376:CDS 30.0%
GGTTTCTTTGTATTCTTGTT+TGG - chr8.2:48950740-48950759 None:intergenic 30.0%
TAATGGTGAAAACACAACAT+TGG - chr8.2:48950761-48950780 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG - chr8.2:48952011-48952030 None:intergenic 30.0%
TTGTTTGGAGAACAAATGTT+TGG - chr8.2:48950725-48950744 None:intergenic 30.0%
! AAAGTTGTTTAGATTTTCCG+TGG - chr8.2:48950869-48950888 None:intergenic 30.0%
! CCGAAATTCAAGATTTCTTT+TGG + chr8.2:48951741-48951760 MS.gene032376:CDS 30.0%
! TTCAGTTGATTTCGTTAACA+AGG + chr8.2:48951041-48951060 MS.gene032376:CDS 30.0%
!!! GAAAGAACTTGTTTTTGTGT+AGG - chr8.2:48950829-48950848 None:intergenic 30.0%
AACAATCCATCTTTAGCATC+AGG - chr8.2:48951633-48951652 None:intergenic 35.0%
ACTGATATGCTAAAAGAGCT+AGG + chr8.2:48951774-48951793 MS.gene032376:CDS 35.0%
ATAGTGCATTTGCAAAGATG+AGG - chr8.2:48951404-48951423 None:intergenic 35.0%
ATTCCTTCAATCCAAATCCA+CGG + chr8.2:48950849-48950868 MS.gene032376:CDS 35.0%
CAGTATATCAGTGTTCTTGA+TGG + chr8.2:48951537-48951556 MS.gene032376:CDS 35.0%
CTGGAACCATACTCTTTATT+GGG + chr8.2:48952039-48952058 MS.gene032376:CDS 35.0%
GAAATATGTCGGACACATAA+AGG - chr8.2:48951863-48951882 None:intergenic 35.0%
GTGTTCCAAGAACTTAGATT+CGG - chr8.2:48951679-48951698 None:intergenic 35.0%
TGATCAGCTACGAAGTTTAT+CGG - chr8.2:48951987-48952006 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG + chr8.2:48952020-48952039 MS.gene032376:CDS 35.0%
TTTCTTCCTGATGCTAAAGA+TGG + chr8.2:48951624-48951643 MS.gene032376:CDS 35.0%
! AATCGGTAGCCACAATTTTT+CGG - chr8.2:48951005-48951024 None:intergenic 35.0%
! CACTATACTTTAAAGGAGTG+TGG + chr8.2:48951418-48951437 MS.gene032376:CDS 35.0%
! CATTTTTGTCAAAGCTCCTT+CGG - chr8.2:48951817-48951836 None:intergenic 35.0%
! GTTTAGATTTTCCGTGGATT+TGG - chr8.2:48950863-48950882 None:intergenic 35.0%
! TCTGGAACCATACTCTTTAT+TGG + chr8.2:48952038-48952057 MS.gene032376:CDS 35.0%
ACCTTCCTTCCGAAAAATTG+TGG + chr8.2:48950993-48951012 MS.gene032376:CDS 40.0%
AGATCGATATTTAGGCCACT+TGG - chr8.2:48951189-48951208 None:intergenic 40.0%
AGCTTCCGAATCTAAGTTCT+TGG + chr8.2:48951671-48951690 MS.gene032376:CDS 40.0%
ATCAATCACCAACCTAACCA+AGG + chr8.2:48950684-48950703 MS.gene032376:CDS 40.0%
ATCTCATAGCTGGTCATGAA+GGG - chr8.2:48951516-48951535 None:intergenic 40.0%
CAAAGAAACCTTGGTTAGGT+TGG - chr8.2:48950695-48950714 None:intergenic 40.0%
CACTTGCCCAATAAAGAGTA+TGG - chr8.2:48952048-48952067 None:intergenic 40.0%
CTTGAATTTCGGAATCCTGA+AGG - chr8.2:48951733-48951752 None:intergenic 40.0%
GATATACTGCATCTCATAGC+TGG - chr8.2:48951526-48951545 None:intergenic 40.0%
GGCTTTCCTTAATGGTATGT+GGG + chr8.2:48950948-48950967 MS.gene032376:CDS 40.0%
GTTCAACCCACATACCATTA+AGG - chr8.2:48950957-48950976 None:intergenic 40.0%
TGCATTTGCAAAGATGAGGT+TGG - chr8.2:48951400-48951419 None:intergenic 40.0%
TGGCTTTCCTTAATGGTATG+TGG + chr8.2:48950947-48950966 MS.gene032376:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + chr8.2:48951330-48951349 MS.gene032376:CDS 40.0%
TGGTCAAAGAAACCTTGGTT+AGG - chr8.2:48950699-48950718 None:intergenic 40.0%
TTGTCTTCACCTTGCGTATA+AGG - chr8.2:48951582-48951601 None:intergenic 40.0%
TTTCCGTGGATTTGGATTGA+AGG - chr8.2:48950855-48950874 None:intergenic 40.0%
! AAAAGACTTAGGGTACCAAG+TGG + chr8.2:48951171-48951190 MS.gene032376:intron 40.0%
! AGGAGCTTTGACAAAAATGG+TGG + chr8.2:48951818-48951837 MS.gene032376:CDS 40.0%
! CGAAGGAGCTTTGACAAAAA+TGG + chr8.2:48951815-48951834 MS.gene032376:CDS 40.0%
! CTTTAAAGGAGTGTGGAAAG+AGG + chr8.2:48951425-48951444 MS.gene032376:CDS 40.0%
AGCCTATGGGGAAAGCTATA+TGG + chr8.2:48951920-48951939 MS.gene032376:CDS 45.0%
ATAGCTTTCCCCATAGGCTT+CGG - chr8.2:48951919-48951938 None:intergenic 45.0%
CATCTCATAGCTGGTCATGA+AGG - chr8.2:48951517-48951536 None:intergenic 45.0%
CCATTAAGGAAAGCCAACGA+AGG - chr8.2:48950943-48950962 None:intergenic 45.0%
CCTATGGGGAAAGCTATATG+GGG + chr8.2:48951922-48951941 MS.gene032376:CDS 45.0%
CTTCGTCTTCCTTATACGCA+AGG + chr8.2:48951570-48951589 MS.gene032376:CDS 45.0%
CTTGCGTATAAGGAAGACGA+AGG - chr8.2:48951572-48951591 None:intergenic 45.0%
GCCTATGGGGAAAGCTATAT+GGG + chr8.2:48951921-48951940 MS.gene032376:CDS 45.0%
GGAGAACAAATGTTTGGCGA+TGG - chr8.2:48950719-48950738 None:intergenic 45.0%
TATGCTAAAAGAGCTAGGCG+TGG + chr8.2:48951779-48951798 MS.gene032376:CDS 45.0%
TCACATTCTCAATGGTAGCC+CGG + chr8.2:48951482-48951501 MS.gene032376:CDS 45.0%
TCAGCTACGAAGTTTATCGG+TGG - chr8.2:48951984-48952003 None:intergenic 45.0%
!! AAGAAGGTACCGAAGCCTAT+GGG + chr8.2:48951907-48951926 MS.gene032376:CDS 45.0%
!! CCTTCGTTGGCTTTCCTTAA+TGG + chr8.2:48950940-48950959 MS.gene032376:CDS 45.0%
!! GCCACAATTTTTCGGAAGGA+AGG - chr8.2:48950997-48951016 None:intergenic 45.0%
!! GGTAGCCACAATTTTTCGGA+AGG - chr8.2:48951001-48951020 None:intergenic 45.0%
!! GTGGTTTTACCTTTCTCCGA+AGG + chr8.2:48951798-48951817 MS.gene032376:CDS 45.0%
AGCACGATGTGGAGCGATAA+TGG - chr8.2:48950778-48950797 None:intergenic 50.0%
CAAGCTTCCTCGCGAATTAG+TGG + chr8.2:48951698-48951717 MS.gene032376:CDS 50.0%
CCAACTTCCACTAATTCGCG+AGG - chr8.2:48951708-48951727 None:intergenic 50.0%
CCCCATATAGCTTTCCCCAT+AGG - chr8.2:48951925-48951944 None:intergenic 50.0%
CCTCGCGAATTAGTGGAAGT+TGG + chr8.2:48951705-48951724 MS.gene032376:CDS 50.0%
GCTACGAAGTTTATCGGTGG+CGG - chr8.2:48951981-48952000 None:intergenic 50.0%
GGCGATGGTCAAAGAAACCT+TGG - chr8.2:48950704-48950723 None:intergenic 50.0%
GTCAAAGCTCCTTCGGAGAA+AGG - chr8.2:48951810-48951829 None:intergenic 50.0%
GTCATGAAGGGAACCTTGAC+CGG - chr8.2:48951504-48951523 None:intergenic 50.0%
TCATGAAGGGAACCTTGACC+GGG - chr8.2:48951503-48951522 None:intergenic 50.0%
!! AGAAGGTACCGAAGCCTATG+GGG + chr8.2:48951908-48951927 MS.gene032376:CDS 50.0%
!! GAAGAAGGTACCGAAGCCTA+TGG + chr8.2:48951906-48951925 MS.gene032376:CDS 50.0%
!! TAGTGGAAGTTGGTGCCTTC+AGG + chr8.2:48951715-48951734 MS.gene032376:CDS 50.0%
CACGGAGGAAACAAGCTGAG+AGG - chr8.2:48950893-48950912 None:intergenic 55.0%
CGATGATGCTCAGCACGATG+TGG - chr8.2:48950789-48950808 None:intergenic 55.0%
GAAAGCCAACGAAGGTCCTC+CGG - chr8.2:48950935-48950954 None:intergenic 55.0%
TCTCAATGGTAGCCCGGTCA+AGG + chr8.2:48951488-48951507 MS.gene032376:CDS 55.0%
! AGGAGCAGCATTGGAGAGCA+CGG - chr8.2:48950911-48950930 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+AGG + chr8.2:48950802-48950821 MS.gene032376:CDS 55.0%
CTCTCCAATGCTGCTCCTGC+CGG + chr8.2:48950913-48950932 MS.gene032376:CDS 60.0%
GTGCTGAGCATCATCGCTGC+TGG + chr8.2:48950793-48950812 MS.gene032376:CDS 60.0%
! AGCAGCATTGGAGAGCACGG+AGG - chr8.2:48950908-48950927 None:intergenic 60.0%
!! ATCGGTGGCGGAGTATCGTG+AGG - chr8.2:48951969-48951988 None:intergenic 60.0%
TCCAATGCTGCTCCTGCCGG+AGG + chr8.2:48950916-48950935 MS.gene032376:CDS 65.0%
TCCTCCGGCAGGAGCAGCAT+TGG - chr8.2:48950920-48950939 None:intergenic 65.0%
TCCTGCCGGAGGACCTTCGT+TGG + chr8.2:48950927-48950946 MS.gene032376:CDS 65.0%
!! GGTGGCGGAGTATCGTGAGG+AGG - chr8.2:48951966-48951985 None:intergenic 65.0%
GCCAACGAAGGTCCTCCGGC+AGG - chr8.2:48950931-48950950 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 48950667 48952088 48950667 ID=MS.gene032376
chr8.2 mRNA 48950667 48952088 48950667 ID=MS.gene032376.t1;Parent=MS.gene032376
chr8.2 exon 48950667 48951062 48950667 ID=MS.gene032376.t1.exon1;Parent=MS.gene032376.t1
chr8.2 CDS 48950667 48951062 48950667 ID=cds.MS.gene032376.t1;Parent=MS.gene032376.t1
chr8.2 exon 48951300 48952088 48951300 ID=MS.gene032376.t1.exon2;Parent=MS.gene032376.t1
chr8.2 CDS 48951300 48952088 48951300 ID=cds.MS.gene032376.t1;Parent=MS.gene032376.t1
Gene Sequence

>MS.gene032376

ATGAATTTTCAGAGCGAATCAATCACCAACCTAACCAAGGTTTCTTTGACCATCGCCAAACATTTGTTCTCCAAACAAGAATACAAAGAAACCAATGTTGTGTTTTCACCATTATCGCTCCACATCGTGCTGAGCATCATCGCTGCTGGCTCTGAAGGTCCTACACAAAAACAAGTTCTTTCATTCCTTCAATCCAAATCCACGGAAAATCTAAACAACTTTGCCTCTCAGCTTGTTTCCTCCGTGCTCTCCAATGCTGCTCCTGCCGGAGGACCTTCGTTGGCTTTCCTTAATGGTATGTGGGTTGAACAGACACTTTCTCTTGAACCTTCCTTCCGAAAAATTGTGGCTACCGATTTCAAAACTAATATTGCTTCAGTTGATTTCGTTAACAAGGTAAAATAATCTACAATCCTTTTTTTTATTTATCTTGAAGCCATATCGTGCTTTTATTATTTTATGTGGTATTTTATTTTGGTTGCTAACACTTCAATATTATTTGATAAAAGACTTAGGGTACCAAGTGGCCTAAATATCGATCTTTGTTCTTGTTTCATTCTATTAAAATAAGTTGTTACTAATTTCAATTGATCATTTTGCACCGTTAATTTTATGTTTGATATTGTTTTAAAGGCTCTCGAAGTGACAAAAGAAGCAAATTTATGGGCTGAAAAAGAGACAAATGGTCTTATAAAAAGTCTACTTTCACCTGAGTCATTTAATAGTTTAACCAACCTCATCTTTGCAAATGCACTATACTTTAAAGGAGTGTGGAAAGAGGAGTTTGATACTTCAGATACAAGAGACTATGATTTTCACATTCTCAATGGTAGCCCGGTCAAGGTTCCCTTCATGACCAGCTATGAGATGCAGTATATCAGTGTTCTTGATGGTTTTAAAGTCCTTCGTCTTCCTTATACGCAAGGTGAAGACAAACGTCGATTCTCTATTTACTTTTTTCTTCCTGATGCTAAAGATGGATTGTTAGCTTTGATTAAGAAGCTAGCTTCCGAATCTAAGTTCTTGGAACACAAGCTTCCTCGCGAATTAGTGGAAGTTGGTGCCTTCAGGATTCCGAAATTCAAGATTTCTTTTGGGCTTGAATGTACTGATATGCTAAAAGAGCTAGGCGTGGTTTTACCTTTCTCCGAAGGAGCTTTGACAAAAATGGTGGACTCTCGTTTTGCTCAAAACCTTTATGTGTCCGACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGTACCGAAGCCTATGGGGAAAGCTATATGGGGATGAGTTTGTGTGATTCTCCTCCTCACGATACTCCGCCACCGATAAACTTCGTAGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACCATACTCTTTATTGGGCAAGTGCTCAATCCTCTTGACAAGTGA
Protein sequence

>MS.gene032376.t1

MNFQSESITNLTKVSLTIAKHLFSKQEYKETNVVFSPLSLHIVLSIIAAGSEGPTQKQVLSFLQSKSTENLNNFASQLVSSVLSNAAPAGGPSLAFLNGMWVEQTLSLEPSFRKIVATDFKTNIASVDFVNKALEVTKEANLWAEKETNGLIKSLLSPESFNSLTNLIFANALYFKGVWKEEFDTSDTRDYDFHILNGSPVKVPFMTSYEMQYISVLDGFKVLRLPYTQGEDKRRFSIYFFLPDAKDGLLALIKKLASESKFLEHKLPRELVEVGAFRIPKFKISFGLECTDMLKELGVVLPFSEGALTKMVDSRFAQNLYVSDIFHKSFIEVNEEGTEAYGESYMGMSLCDSPPHDTPPPINFVADHPFLFLIREDLSGTILFIGQVLNPLDK