AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033062


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033062.t1 MTR_4g109510 99.371 159 1 0 1 159 1 159 2.55e-113 342
MS.gene033062.t1 MTR_4g109510 98.225 169 3 0 159 327 437 605 1.86e-111 337
MS.gene033062.t1 MTR_3g070480 80.682 88 15 2 206 291 6 93 1.36e-27 104
MS.gene033062.t1 MTR_7g112360 45.588 68 37 0 8 75 16 83 7.76e-16 73.2
MS.gene033062.t1 MTR_7g112360 45.588 68 37 0 8 75 16 83 9.16e-16 74.3
MS.gene033062.t1 MTR_8g022310 53.731 67 29 1 10 74 12 78 2.41e-15 73.9
MS.gene033062.t1 MTR_8g022310 53.731 67 29 1 10 74 12 78 2.75e-15 73.9
MS.gene033062.t1 MTR_8g022310 52.941 68 30 1 9 74 11 78 3.17e-15 73.9
MS.gene033062.t1 MTR_8g022310 53.731 67 29 1 10 74 12 78 4.16e-15 73.9
MS.gene033062.t1 MTR_4g085070 50.000 62 31 0 14 75 18 79 2.56e-13 67.0
MS.gene033062.t1 MTR_1g110310 34.899 149 79 5 2 149 10 141 2.40e-12 67.8
MS.gene033062.t1 MTR_6g026940 50.000 64 31 1 9 71 3 66 1.14e-11 63.2
MS.gene033062.t1 MTR_6g027110 46.269 67 35 1 9 74 3 69 1.23e-11 62.0
MS.gene033062.t1 MTR_2g104030 38.462 104 56 2 9 109 71 169 1.87e-11 65.1
MS.gene033062.t1 MTR_2g014470 44.118 68 35 1 9 76 5 69 1.97e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033062.t1 AT1G74250 71.257 167 40 3 1 159 1 167 7.10e-78 250
MS.gene033062.t1 AT3G14200 53.846 65 29 1 10 74 14 77 2.36e-14 71.6
MS.gene033062.t1 AT1G56300 38.889 72 44 0 3 74 8 79 5.72e-13 65.1
MS.gene033062.t1 AT1G56300 38.889 72 44 0 3 74 8 79 5.92e-13 66.2
MS.gene033062.t1 AT5G25530 35.345 116 59 5 9 112 5 116 2.31e-12 67.4
MS.gene033062.t1 AT1G71000 41.892 74 43 0 1 74 1 74 2.66e-12 64.7
MS.gene033062.t1 AT1G71000 41.892 74 43 0 1 74 1 74 4.88e-12 63.9
MS.gene033062.t1 AT2G33735 43.243 74 38 1 9 82 23 92 3.75e-11 60.1
MS.gene033062.t1 AT2G33735 43.243 74 38 1 9 82 23 92 3.75e-11 60.1
MS.gene033062.t1 AT1G59980 44.595 74 37 1 6 79 21 90 3.80e-11 63.9
MS.gene033062.t1 AT1G59980 44.595 74 37 1 6 79 21 90 4.37e-11 63.9
MS.gene033062.t1 AT3G62600 42.105 76 40 1 1 76 19 90 7.47e-11 62.8
MS.gene033062.t1 AT3G12170 41.758 91 45 2 10 100 13 95 7.87e-11 62.0
MS.gene033062.t1 AT2G20560 44.118 68 35 1 9 76 5 69 9.11e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCCTCTTATGGGGAATT+TGG 0.141158 8.3:+15209195 MS.gene033062:CDS
ACGGAATTAGACTTTGAATT+TGG 0.172659 8.3:-15209010 None:intergenic
CGAAGCCACCGCTCAGTTTC+AGG 0.199966 8.3:+15208901 MS.gene033062:CDS
TTGCTAAGAAATTAGGTTTA+GGG 0.251194 8.3:+15209155 MS.gene033062:CDS
TGTTAGACAGGCTCCTCTTA+TGG 0.265835 8.3:+15209186 MS.gene033062:CDS
GGCGTTGGAGAGCGAGTTTC+CGG 0.265860 8.3:-15208841 None:intergenic
TTTGCTAAGAAATTAGGTTT+AGG 0.269838 8.3:+15209154 MS.gene033062:CDS
TGATGTGTTTGATAAAATTC+AGG 0.297358 8.3:+15209117 MS.gene033062:CDS
GAGAAGAATGTAATCAATAT+TGG 0.312751 8.3:+15210348 MS.gene033062:CDS
TTCCGGTAAGGGTTTCTATA+AGG 0.322734 8.3:+15209087 MS.gene033062:CDS
GATGTTGATGATGATGAAAT+TGG 0.336996 8.3:+15210096 MS.gene033062:CDS
CCTGATTTGACGAGCTTGTC+AGG 0.337742 8.3:-15208866 None:intergenic
GTTAGACAGGCTCCTCTTAT+GGG 0.353059 8.3:+15209187 MS.gene033062:CDS
AAGAACTCCGATCAGCTTAC+CGG 0.367180 8.3:+15208822 MS.gene033062:CDS
GGGCTTGTGTGTTGAAGCAC+TGG 0.368221 8.3:-15210160 None:intergenic
ATGTTGATGATGATGAAATT+GGG 0.378497 8.3:+15210097 MS.gene033062:CDS
CCTGACAAGCTCGTCAAATC+AGG 0.380161 8.3:+15208866 MS.gene033062:CDS
TAAGCTGATCGGAGTTCTTC+CGG 0.384438 8.3:-15208818 None:intergenic
CTGAAACTGAGCGGTGGCTT+CGG 0.388334 8.3:-15208900 None:intergenic
TCGTACCAAGCTCGTTCCTT+TGG 0.399711 8.3:-15208956 None:intergenic
GAAGAAGATTTCAAATCAAC+CGG 0.408421 8.3:+15210467 MS.gene033062:CDS
GAAACTAATGTGCCTACTAA+TGG 0.414627 8.3:+15210318 MS.gene033062:CDS
TTCTCACTCTCAATTTGAGT+TGG 0.428513 8.3:-15210198 None:intergenic
ATCCGAAAACCCCGAAAATA+CGG 0.430044 8.3:-15209065 None:intergenic
AGGGATTGATTCTGTTAGAC+AGG 0.434136 8.3:+15209174 MS.gene033062:CDS
TTCGAGGAAAATGAGGATAA+TGG 0.435391 8.3:+15210411 MS.gene033062:CDS
AAAGCCGTAACCTGCGCATA+AGG 0.439715 8.3:-15209223 None:intergenic
AACCTTATAGAAACCCTTAC+CGG 0.442360 8.3:-15209089 None:intergenic
CGATGCCACTACGAAGTTCT+CGG 0.443193 8.3:+15208776 MS.gene033062:CDS
TTCTCATATTTGCCATTAGT+AGG 0.462771 8.3:-15210330 None:intergenic
CGAGCTTGTCAGGGTGGCGT+TGG 0.466381 8.3:-15208856 None:intergenic
CTATCCAAATTCCCCATAAG+AGG 0.477965 8.3:-15209199 None:intergenic
GAATGATGGGGTTGGTGCTA+TGG 0.478029 8.3:+15210224 MS.gene033062:CDS
GTCTAGTTCCCAATATTTCG+AGG 0.480169 8.3:+15210395 MS.gene033062:CDS
CCAATATTTCGAGGAAAATG+AGG 0.482316 8.3:+15210404 MS.gene033062:CDS
GTTCTTGAAGCAATGCTGGC+TGG 0.482368 8.3:+15210120 MS.gene033062:CDS
TGGGGTTCTTGAAGCAATGC+TGG 0.483544 8.3:+15210116 MS.gene033062:CDS
AGTTGGAGTTTCAGAAGCCT+CGG 0.497718 8.3:-15210181 None:intergenic
GGCTTGTGTGTTGAAGCACT+GGG 0.501875 8.3:-15210159 None:intergenic
GAGAGTGAGAATGAGAATGA+TGG 0.521962 8.3:+15210210 MS.gene033062:CDS
TGGATCGGAGAGTACCTCAT+AGG 0.522444 8.3:-15208936 None:intergenic
CGAAGCAACAATGGCATCGA+CGG 0.524518 8.3:+15208748 None:intergenic
CATTCTCATCAAAATCAAAC+CGG 0.526287 8.3:-15210059 None:intergenic
CGAGTTTCCGGTAAGCTGAT+CGG 0.532549 8.3:-15208829 None:intergenic
ATTAGACTTTGAATTTGGAT+CGG 0.533157 8.3:-15209005 None:intergenic
AGAGTGAGAATGAGAATGAT+GGG 0.534818 8.3:+15210211 MS.gene033062:CDS
TTGAATTTGGATCGGAGAAG+AGG 0.548637 8.3:-15208997 None:intergenic
AATGTAATCAATATTGGAGA+TGG 0.550622 8.3:+15210354 MS.gene033062:CDS
GAAGAGGATTTGAGAACGAT+GGG 0.554440 8.3:-15208981 None:intergenic
CCAAGCTCGTTCCTTTGGAT+CGG 0.555573 8.3:-15208951 None:intergenic
GTTGGAGTTTCAGAAGCCTC+GGG 0.557564 8.3:-15210180 None:intergenic
AGAAGAGGATTTGAGAACGA+TGG 0.558151 8.3:-15208982 None:intergenic
CCGATCCAAAGGAACGAGCT+TGG 0.558363 8.3:+15208951 MS.gene033062:CDS
CGAAAACAGGTCAGGGACAA+CGG 0.566006 8.3:-15209029 None:intergenic
TTTGGATAGTCCTTATGCGC+AGG 0.567782 8.3:+15209213 MS.gene033062:CDS
GAGCAAAGAAAGAGAAGGGT+GGG 0.568242 8.3:+15210283 MS.gene033062:CDS
TCTACCTCGCGAATGCTCAC+CGG 0.571563 8.3:+15208799 MS.gene033062:CDS
CTGATTTGACGAGCTTGTCA+GGG 0.572375 8.3:-15208865 None:intergenic
GGAGCTACAACACGCCTATG+AGG 0.575033 8.3:+15208922 MS.gene033062:CDS
CGGTGGCTTCGGATTGAGAG+AGG 0.580013 8.3:-15208889 None:intergenic
ACGTAGAGCAAAGAAAGAGA+AGG 0.595059 8.3:+15210278 MS.gene033062:CDS
TGAGGTACTCTCCGATCCAA+AGG 0.600261 8.3:+15208940 MS.gene033062:CDS
CGGTAAAGAGAATGAGCAGG+TGG 0.606870 8.3:+15210434 MS.gene033062:CDS
TTAGACAGGCTCCTCTTATG+GGG 0.611836 8.3:+15209188 MS.gene033062:CDS
TGGCGGTAAAGAGAATGAGC+AGG 0.613961 8.3:+15210431 MS.gene033062:CDS
CGTAGAGCAAAGAAAGAGAA+GGG 0.619612 8.3:+15210279 MS.gene033062:CDS
TGTTGATGATGATGAAATTG+GGG 0.621284 8.3:+15210098 MS.gene033062:CDS
GAGAATGAGAATGATGGGGT+TGG 0.635119 8.3:+15210216 MS.gene033062:CDS
ATTTGACGAGCTTGTCAGGG+TGG 0.643119 8.3:-15208862 None:intergenic
AGAGCAAAGAAAGAGAAGGG+TGG 0.655964 8.3:+15210282 MS.gene033062:CDS
TGCTTCAACACACAAGCCCG+AGG 0.660773 8.3:+15210164 MS.gene033062:CDS
TAGCTCCTGAAACTGAGCGG+TGG 0.662261 8.3:-15208906 None:intergenic
AGATCAAAACTTTCAACCAG+AGG 0.672866 8.3:+15210525 MS.gene033062:CDS
TCTTCCGGTGAGCATTCGCG+AGG 0.687306 8.3:-15208803 None:intergenic
GGTAAAGAGAATGAGCAGGT+GGG 0.690040 8.3:+15210435 MS.gene033062:CDS
GAGGAAAATGAGGATAATGG+CGG 0.690575 8.3:+15210414 MS.gene033062:CDS
GAGTGAGAATGAGAATGATG+GGG 0.711594 8.3:+15210212 MS.gene033062:CDS
GTAGACCGAGAACTTCGTAG+TGG 0.735555 8.3:-15208781 None:intergenic
TTGTAGCTCCTGAAACTGAG+CGG 0.736164 8.3:-15208909 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATAAAAACATACATT+TGG - chr8.3:15210558-15210577 None:intergenic 15.0%
!!! ATTAATTTTGCTAAGAAATT+AGG + chr8.3:15209148-15209167 MS.gene033062:CDS 15.0%
!!! TTAATTTTGATGAAATTAAG+AGG + chr8.3:15210727-15210746 MS.gene033062:intron 15.0%
!! AAAAAATTGGAAGTAAAACA+AGG - chr8.3:15210690-15210709 None:intergenic 20.0%
!! ACTTAGTAAAGCAAAAAAAT+TGG - chr8.3:15210703-15210722 None:intergenic 20.0%
!! CAGAATAATAAACAAGAAAA+TGG - chr8.3:15210779-15210798 None:intergenic 20.0%
!!! CTTTGTTTTATTTTATTCTC+AGG + chr8.3:15211063-15211082 MS.gene033062:intron 20.0%
!!! TTTTCTTGTTTATTATTCTG+TGG + chr8.3:15210779-15210798 MS.gene033062:intron 20.0%
! AATGTAATCAATATTGGAGA+TGG + chr8.3:15210354-15210373 MS.gene033062:CDS 25.0%
! ATTAGACTTTGAATTTGGAT+CGG - chr8.3:15209008-15209027 None:intergenic 25.0%
! GAGAAGAATGTAATCAATAT+TGG + chr8.3:15210348-15210367 MS.gene033062:CDS 25.0%
! TGATGTGTTTGATAAAATTC+AGG + chr8.3:15209117-15209136 MS.gene033062:CDS 25.0%
! TTCTTGAATTAGAGAAATCT+TGG + chr8.3:15210921-15210940 MS.gene033062:intron 25.0%
! TTGAAATTTGATGAGTAAGA+GGG - chr8.3:15210997-15211016 None:intergenic 25.0%
! TTGCTAAGAAATTAGGTTTA+GGG + chr8.3:15209155-15209174 MS.gene033062:CDS 25.0%
! TTTGCTAAGAAATTAGGTTT+AGG + chr8.3:15209154-15209173 MS.gene033062:CDS 25.0%
!! TTACGGCTTTTTATAGTTAT+TGG + chr8.3:15209236-15209255 MS.gene033062:intron 25.0%
!! TTTTTAAATTCACACATGTG+AGG + chr8.3:15210804-15210823 MS.gene033062:intron 25.0%
!!! ATGTTGATGATGATGAAATT+GGG + chr8.3:15210097-15210116 MS.gene033062:CDS 25.0%
!!! GCTTTTTATAGTTATTGGTT+GGG + chr8.3:15209241-15209260 MS.gene033062:intron 25.0%
!!! TTTGATTTTGATGAGAATGA+TGG + chr8.3:15210063-15210082 MS.gene033062:CDS 25.0%
!!! TTTTTTTGCTTTACTAAGTG+TGG + chr8.3:15210704-15210723 MS.gene033062:intron 25.0%
ACGGAATTAGACTTTGAATT+TGG - chr8.3:15209013-15209032 None:intergenic 30.0%
CAACAACAGTATATTAGAAC+AGG - chr8.3:15210640-15210659 None:intergenic 30.0%
CATTCTCATCAAAATCAAAC+CGG - chr8.3:15210062-15210081 None:intergenic 30.0%
CTGTTCTAATATACTGTTGT+TGG + chr8.3:15210638-15210657 MS.gene033062:intron 30.0%
CTTGAAATTTGATGAGTAAG+AGG - chr8.3:15210998-15211017 None:intergenic 30.0%
GAAGAAGATTTCAAATCAAC+CGG + chr8.3:15210467-15210486 MS.gene033062:CDS 30.0%
TAAGAGAGTGATTGATATGA+AGG + chr8.3:15209435-15209454 MS.gene033062:intron 30.0%
TAATGATACTGTGAGAAAGT+TGG + chr8.3:15209390-15209409 MS.gene033062:intron 30.0%
TATGAAGGTGAAGAAGAATT+TGG + chr8.3:15209450-15209469 MS.gene033062:intron 30.0%
TATTCGAGAAAAACGAAAAC+AGG - chr8.3:15209045-15209064 None:intergenic 30.0%
TCATCATTGTTTATGTTGTG+AGG + chr8.3:15211024-15211043 MS.gene033062:intron 30.0%
TTCTCATATTTGCCATTAGT+AGG - chr8.3:15210333-15210352 None:intergenic 30.0%
TTCTTGAAACAATGGTATCT+GGG + chr8.3:15210028-15210047 MS.gene033062:intron 30.0%
! CTCATTTTCCTCGAAATATT+GGG - chr8.3:15210406-15210425 None:intergenic 30.0%
! GACTGTTATGGATTTTTGTT+GGG + chr8.3:15209270-15209289 MS.gene033062:intron 30.0%
! GGCTTTTTATAGTTATTGGT+TGG + chr8.3:15209240-15209259 MS.gene033062:intron 30.0%
! TTTCTCGAATACCGTATTTT+CGG + chr8.3:15209054-15209073 MS.gene033062:CDS 30.0%
!! AATCAACCGGTTGATAAAAA+AGG + chr8.3:15210480-15210499 MS.gene033062:CDS 30.0%
!! GATGTTGATGATGATGAAAT+TGG + chr8.3:15210096-15210115 MS.gene033062:CDS 30.0%
!! TGTTGATGATGATGAAATTG+GGG + chr8.3:15210098-15210117 MS.gene033062:CDS 30.0%
!!! AGTTTTATTGTGTGTTGTGT+GGG + chr8.3:15209638-15209657 MS.gene033062:intron 30.0%
!!! GAAGTTCCTTTTTTATCAAC+CGG - chr8.3:15210489-15210508 None:intergenic 30.0%
!!! GTTTCTTTTTTGCAGGTTTT+CGG - chr8.3:15210260-15210279 None:intergenic 30.0%
AAATTTGATGAGTAAGAGGG+AGG - chr8.3:15210994-15211013 None:intergenic 35.0%
AACCTTATAGAAACCCTTAC+CGG - chr8.3:15209092-15209111 None:intergenic 35.0%
AAGAGAATAATAAGGTGAGG+AGG + chr8.3:15209350-15209369 MS.gene033062:intron 35.0%
AGAAAAACGAAAACAGGTCA+GGG - chr8.3:15209039-15209058 None:intergenic 35.0%
AGAAGTTGAGGATTTGTATG+AGG + chr8.3:15209585-15209604 MS.gene033062:intron 35.0%
AGAGGAAAGATTAGAAAGTG+AGG + chr8.3:15209807-15209826 MS.gene033062:intron 35.0%
AGAGTGAGAATGAGAATGAT+GGG + chr8.3:15210211-15210230 MS.gene033062:CDS 35.0%
AGATCAAAACTTTCAACCAG+AGG + chr8.3:15210525-15210544 MS.gene033062:CDS 35.0%
AGGAAGAGAATAATAAGGTG+AGG + chr8.3:15209347-15209366 MS.gene033062:intron 35.0%
AGTTTAAGAGTGAGAAGCAA+TGG + chr8.3:15209665-15209684 MS.gene033062:intron 35.0%
CATACATATCTCAGTAGTCA+TGG - chr8.3:15210609-15210628 None:intergenic 35.0%
CCAATATTTCGAGGAAAATG+AGG + chr8.3:15210404-15210423 MS.gene033062:CDS 35.0%
CGATGATGTTCTTGAAACAA+TGG + chr8.3:15210020-15210039 MS.gene033062:intron 35.0%
CTTCTGTTTAATGGAAGACA+TGG - chr8.3:15210863-15210882 None:intergenic 35.0%
GAAACTAATGTGCCTACTAA+TGG + chr8.3:15210318-15210337 MS.gene033062:CDS 35.0%
GAAATCAGAATAGAGCAGAA+AGG - chr8.3:15210886-15210905 None:intergenic 35.0%
GATGGAGGAAGAGAATAATA+AGG + chr8.3:15209342-15209361 MS.gene033062:intron 35.0%
GTTCTTGAAACAATGGTATC+TGG + chr8.3:15210027-15210046 MS.gene033062:intron 35.0%
GTTTGAGAAGAAAGATGAGA+AGG + chr8.3:15209615-15209634 MS.gene033062:intron 35.0%
TCATTGTCACCATCATCATT+CGG - chr8.3:15209919-15209938 None:intergenic 35.0%
TTCGAGGAAAATGAGGATAA+TGG + chr8.3:15210411-15210430 MS.gene033062:CDS 35.0%
TTCTCACTCTCAATTTGAGT+TGG - chr8.3:15210201-15210220 None:intergenic 35.0%
! CCTCATTTTCCTCGAAATAT+TGG - chr8.3:15210407-15210426 None:intergenic 35.0%
! CGACTGTTATGGATTTTTGT+TGG + chr8.3:15209269-15209288 MS.gene033062:intron 35.0%
! TGTTATGGATTTTTGTTGGG+CGG + chr8.3:15209273-15209292 MS.gene033062:intron 35.0%
! TTCTCGAATACCGTATTTTC+GGG + chr8.3:15209055-15209074 MS.gene033062:CDS 35.0%
!! CTGGTTGAAAGTTTTGATCT+GGG - chr8.3:15210525-15210544 None:intergenic 35.0%
!! TCTGGTTGAAAGTTTTGATC+TGG - chr8.3:15210526-15210545 None:intergenic 35.0%
!!! GAGTTTTATTGTGTGTTGTG+TGG + chr8.3:15209637-15209656 MS.gene033062:intron 35.0%
!!! TACATTTGGTTTTCTTCCTC+TGG - chr8.3:15210544-15210563 None:intergenic 35.0%
AAAGAGAAGGGTGGGAAAAA+TGG + chr8.3:15210291-15210310 MS.gene033062:CDS 40.0%
AAGAGAAGGGTGGGAAAAAT+GGG + chr8.3:15210292-15210311 MS.gene033062:CDS 40.0%
ACAACATAGCAACGTTATCC+TGG - chr8.3:15210837-15210856 None:intergenic 40.0%
ACGTAGAGCAAAGAAAGAGA+AGG + chr8.3:15210278-15210297 MS.gene033062:CDS 40.0%
AGAAGAGGATTTGAGAACGA+TGG - chr8.3:15208985-15209004 None:intergenic 40.0%
AGATTAGAAAGTGAGGAGGA+TGG + chr8.3:15209814-15209833 MS.gene033062:intron 40.0%
ATCCGAAAACCCCGAAAATA+CGG - chr8.3:15209068-15209087 None:intergenic 40.0%
CGTAGAGCAAAGAAAGAGAA+GGG + chr8.3:15210279-15210298 MS.gene033062:CDS 40.0%
CTATCCAAATTCCCCATAAG+AGG - chr8.3:15209202-15209221 None:intergenic 40.0%
GAAGAGGATTTGAGAACGAT+GGG - chr8.3:15208984-15209003 None:intergenic 40.0%
GAATAATAAGGTGAGGAGGA+AGG + chr8.3:15209354-15209373 MS.gene033062:intron 40.0%
GAGAAAAACGAAAACAGGTC+AGG - chr8.3:15209040-15209059 None:intergenic 40.0%
GAGAGTGAGAATGAGAATGA+TGG + chr8.3:15210210-15210229 MS.gene033062:CDS 40.0%
GAGTGAGAATGAGAATGATG+GGG + chr8.3:15210212-15210231 MS.gene033062:CDS 40.0%
GCAGAAAGGCTTCTGTTTAA+TGG - chr8.3:15210872-15210891 None:intergenic 40.0%
GGAAAGATTAGAAAGTGAGG+AGG + chr8.3:15209810-15209829 MS.gene033062:intron 40.0%
GGTGAAGAAGAATTTGGAGA+TGG + chr8.3:15209456-15209475 MS.gene033062:intron 40.0%
TTCCGGTAAGGGTTTCTATA+AGG + chr8.3:15209087-15209106 MS.gene033062:CDS 40.0%
TTGAATTTGGATCGGAGAAG+AGG - chr8.3:15209000-15209019 None:intergenic 40.0%
! AGGGATTGATTCTGTTAGAC+AGG + chr8.3:15209174-15209193 MS.gene033062:CDS 40.0%
! GAGGAAAATGAGGATAATGG+CGG + chr8.3:15210414-15210433 MS.gene033062:CDS 40.0%
! GTCTAGTTCCCAATATTTCG+AGG + chr8.3:15210395-15210414 MS.gene033062:CDS 40.0%
! GTTGGGATTTTCGACTGTTA+TGG + chr8.3:15209258-15209277 MS.gene033062:intron 40.0%
! TCTCGAATACCGTATTTTCG+GGG + chr8.3:15209056-15209075 MS.gene033062:CDS 40.0%
! TGAGCAGAGTAAGAAGCATA+AGG + chr8.3:15209696-15209715 MS.gene033062:intron 40.0%
!! GGATTCACTTGATGATGAAG+AGG + chr8.3:15209738-15209757 MS.gene033062:intron 40.0%
!! GGCTGATTTTGTGAAGAAGA+GGG + chr8.3:15209411-15209430 MS.gene033062:intron 40.0%
!! GGTTGATGAAGAAGAAGTTG+AGG + chr8.3:15209573-15209592 MS.gene033062:intron 40.0%
!! TACCGTATTTTCGGGGTTTT+CGG + chr8.3:15209063-15209082 MS.gene033062:CDS 40.0%
!! TGGCTGATTTTGTGAAGAAG+AGG + chr8.3:15209410-15209429 MS.gene033062:intron 40.0%
!!! GCTCTACGTTTCTTTTTTGC+AGG - chr8.3:15210267-15210286 None:intergenic 40.0%
AACAATGGTATCTGGGCACA+AGG + chr8.3:15210035-15210054 MS.gene033062:intron 45.0%
AAGAACTCCGATCAGCTTAC+CGG + chr8.3:15208822-15208841 MS.gene033062:CDS 45.0%
ACAATGGTATCTGGGCACAA+GGG + chr8.3:15210036-15210055 MS.gene033062:intron 45.0%
ACGAGGAAGGTGAAAGTGAA+GGG + chr8.3:15209779-15209798 MS.gene033062:intron 45.0%
AGAGAAGGGTGGGAAAAATG+GGG + chr8.3:15210293-15210312 MS.gene033062:CDS 45.0%
AGAGCAAAGAAAGAGAAGGG+TGG + chr8.3:15210282-15210301 MS.gene033062:CDS 45.0%
AGAGGAGTTAGAAGCTGAAG+TGG + chr8.3:15209756-15209775 MS.gene033062:intron 45.0%
AGTTGGAGTTTCAGAAGCCT+CGG - chr8.3:15210184-15210203 None:intergenic 45.0%
CAGTAGTCATGGCACAATAC+AGG - chr8.3:15210598-15210617 None:intergenic 45.0%
GAAGAAGAAAGAGGAGGAGA+AGG + chr8.3:15209480-15209499 MS.gene033062:intron 45.0%
GAGCAAAGAAAGAGAAGGGT+GGG + chr8.3:15210283-15210302 MS.gene033062:CDS 45.0%
GATGGAGAAGAAGAAAGAGG+AGG + chr8.3:15209474-15209493 MS.gene033062:intron 45.0%
GCACAATACAGGAACAGAAC+AGG - chr8.3:15210587-15210606 None:intergenic 45.0%
GGAGAAAGTTGCTGAGTTCA+AGG + chr8.3:15209717-15209736 MS.gene033062:intron 45.0%
GGAGATGGAGAAGAAGAAAG+AGG + chr8.3:15209471-15209490 MS.gene033062:intron 45.0%
GGTAAAGAGAATGAGCAGGT+GGG + chr8.3:15210435-15210454 MS.gene033062:CDS 45.0%
GTTAGACAGGCTCCTCTTAT+GGG + chr8.3:15209187-15209206 MS.gene033062:CDS 45.0%
TAAGCTGATCGGAGTTCTTC+CGG - chr8.3:15208821-15208840 None:intergenic 45.0%
TAGTCCTTATGCGCAGGTTA+CGG + chr8.3:15209219-15209238 MS.gene033062:intron 45.0%
TCATCAACCTTAGCCCAATC+AGG - chr8.3:15209562-15209581 None:intergenic 45.0%
TGTTAGACAGGCTCCTCTTA+TGG + chr8.3:15209186-15209205 MS.gene033062:CDS 45.0%
TTAGACAGGCTCCTCTTATG+GGG + chr8.3:15209188-15209207 MS.gene033062:CDS 45.0%
TTGTAGCTCCTGAAACTGAG+CGG - chr8.3:15208912-15208931 None:intergenic 45.0%
TTTGGATAGTCCTTATGCGC+AGG + chr8.3:15209213-15209232 MS.gene033062:CDS 45.0%
! AGAAGACGAGAGTGCAAATG+GGG + chr8.3:15209888-15209907 MS.gene033062:intron 45.0%
! CAGAAGACGAGAGTGCAAAT+GGG + chr8.3:15209887-15209906 MS.gene033062:intron 45.0%
! CTGATTTGACGAGCTTGTCA+GGG - chr8.3:15208868-15208887 None:intergenic 45.0%
! GAGAATGAGAATGATGGGGT+TGG + chr8.3:15210216-15210235 MS.gene033062:CDS 45.0%
! TTTTTGCGAGACATGTGAGC+AGG + chr8.3:15210947-15210966 MS.gene033062:intron 45.0%
!! TTTTCGGGGTTTTCGGATTC+CGG + chr8.3:15209070-15209089 MS.gene033062:CDS 45.0%
AAAGCCGTAACCTGCGCATA+AGG - chr8.3:15209226-15209245 None:intergenic 50.0%
AAAGTGAGGAGGATGGCGTT+GGG + chr8.3:15209821-15209840 MS.gene033062:intron 50.0%
AACCTCCGCGACTTCCTATT+CGG - chr8.3:15209322-15209341 None:intergenic 50.0%
AGAAAGAGGAGGAGAAGGAG+AGG + chr8.3:15209485-15209504 MS.gene033062:intron 50.0%
AGAGGAAGTTGGAGATGGAG+AGG + chr8.3:15209509-15209528 MS.gene033062:intron 50.0%
ATTTGACGAGCTTGTCAGGG+TGG - chr8.3:15208865-15208884 None:intergenic 50.0%
CCAAGCTCGTTCCTTTGGAT+CGG - chr8.3:15208954-15208973 None:intergenic 50.0%
CCTGACAAGCTCGTCAAATC+AGG + chr8.3:15208866-15208885 MS.gene033062:CDS 50.0%
CGAAAACAGGTCAGGGACAA+CGG - chr8.3:15209032-15209051 None:intergenic 50.0%
CGAGGAAGGTGAAAGTGAAG+GGG + chr8.3:15209780-15209799 MS.gene033062:intron 50.0%
CGAGTTTCCGGTAAGCTGAT+CGG - chr8.3:15208832-15208851 None:intergenic 50.0%
CGATGCCACTACGAAGTTCT+CGG + chr8.3:15208776-15208795 MS.gene033062:CDS 50.0%
CGGTAAAGAGAATGAGCAGG+TGG + chr8.3:15210434-15210453 MS.gene033062:CDS 50.0%
GAAGGAGAGGAAGAGGAAGT+TGG + chr8.3:15209498-15209517 MS.gene033062:intron 50.0%
GAAGGTGAAAGTGAAGGGGT+TGG + chr8.3:15209784-15209803 MS.gene033062:intron 50.0%
GAAGTTGGAGATGGAGAGGA+AGG + chr8.3:15209513-15209532 MS.gene033062:intron 50.0%
GACGAGGAAGGTGAAAGTGA+AGG + chr8.3:15209778-15209797 MS.gene033062:intron 50.0%
GAGGAAGAGGAAGTTGGAGA+TGG + chr8.3:15209504-15209523 MS.gene033062:intron 50.0%
GATGAGTATGATGCGATGGC+AGG + chr8.3:15209295-15209314 MS.gene033062:intron 50.0%
GGCTCCTCTTATGGGGAATT+TGG + chr8.3:15209195-15209214 MS.gene033062:CDS 50.0%
GGCTTATGAGGAGCCTGATT+GGG + chr8.3:15209546-15209565 MS.gene033062:intron 50.0%
GTAGACCGAGAACTTCGTAG+TGG - chr8.3:15208784-15208803 None:intergenic 50.0%
GTGAGCAGGAGTTTGAGTCA+AGG + chr8.3:15210961-15210980 MS.gene033062:intron 50.0%
GTTAGAAGCTGAAGTGGACG+AGG + chr8.3:15209762-15209781 MS.gene033062:intron 50.0%
GTTCTTGAAGCAATGCTGGC+TGG + chr8.3:15210120-15210139 MS.gene033062:CDS 50.0%
GTTGGAGTTTCAGAAGCCTC+GGG - chr8.3:15210183-15210202 None:intergenic 50.0%
TCGTACCAAGCTCGTTCCTT+TGG - chr8.3:15208959-15208978 None:intergenic 50.0%
TGAAAGTGAAGGGGTTGGAG+AGG + chr8.3:15209789-15209808 MS.gene033062:intron 50.0%
TGCTGAGCATGCAGAAGATG+AGG + chr8.3:15209951-15209970 MS.gene033062:intron 50.0%
TGGCGGTAAAGAGAATGAGC+AGG + chr8.3:15210431-15210450 MS.gene033062:CDS 50.0%
TGGCTTATGAGGAGCCTGAT+TGG + chr8.3:15209545-15209564 MS.gene033062:intron 50.0%
TGGGGTTCTTGAAGCAATGC+TGG + chr8.3:15210116-15210135 MS.gene033062:CDS 50.0%
! CCTGATTTGACGAGCTTGTC+AGG - chr8.3:15208869-15208888 None:intergenic 50.0%
! GCAGAAGACGAGAGTGCAAA+TGG + chr8.3:15209886-15209905 MS.gene033062:intron 50.0%
! GGCTTGTGTGTTGAAGCACT+GGG - chr8.3:15210162-15210181 None:intergenic 50.0%
! GGGTTTTCGGATTCCGGTAA+GGG + chr8.3:15209076-15209095 MS.gene033062:CDS 50.0%
! TGAGGTACTCTCCGATCCAA+AGG + chr8.3:15208940-15208959 MS.gene033062:CDS 50.0%
!! GAATGATGGGGTTGGTGCTA+TGG + chr8.3:15210224-15210243 MS.gene033062:CDS 50.0%
!! TGGATCGGAGAGTACCTCAT+AGG - chr8.3:15208939-15208958 None:intergenic 50.0%
!! TGGCGTTGGGGTTGATGATT+TGG + chr8.3:15209834-15209853 MS.gene033062:intron 50.0%
AAGTGAGGAGGATGGCGTTG+GGG + chr8.3:15209822-15209841 MS.gene033062:intron 55.0%
AGGAGGAGAAGGAGAGGAAG+AGG + chr8.3:15209491-15209510 MS.gene033062:intron 55.0%
ATGCGATGGCAGGTCCGAAT+AGG + chr8.3:15209305-15209324 MS.gene033062:intron 55.0%
CACATGTGAGGCATGTAGCC+AGG + chr8.3:15210816-15210835 MS.gene033062:intron 55.0%
CAGGTCCGAATAGGAAGTCG+CGG + chr8.3:15209314-15209333 MS.gene033062:intron 55.0%
CCGATCCAAAGGAACGAGCT+TGG + chr8.3:15208951-15208970 MS.gene033062:CDS 55.0%
CTGAAACTGAGCGGTGGCTT+CGG - chr8.3:15208903-15208922 None:intergenic 55.0%
GAAAGTGAGGAGGATGGCGT+TGG + chr8.3:15209820-15209839 MS.gene033062:intron 55.0%
GAAGCTGAAGTGGACGAGGA+AGG + chr8.3:15209766-15209785 MS.gene033062:intron 55.0%
GGAGAGGGCTATGGCTTATG+AGG + chr8.3:15209534-15209553 MS.gene033062:intron 55.0%
GGAGATGGAGAGGAAGGAGA+GGG + chr8.3:15209519-15209538 MS.gene033062:intron 55.0%
GGAGCTACAACACGCCTATG+AGG + chr8.3:15208922-15208941 MS.gene033062:CDS 55.0%
GGCGGATGAGTATGATGCGA+TGG + chr8.3:15209291-15209310 MS.gene033062:intron 55.0%
GGGCTTGTGTGTTGAAGCAC+TGG - chr8.3:15210163-15210182 None:intergenic 55.0%
GGGGTTGAGCCGAATGATGA+TGG + chr8.3:15209907-15209926 MS.gene033062:intron 55.0%
TAGCTCCTGAAACTGAGCGG+TGG - chr8.3:15208909-15208928 None:intergenic 55.0%
TAGGAAGTCGCGGAGGTTGA+TGG + chr8.3:15209324-15209343 MS.gene033062:intron 55.0%
TCTACCTCGCGAATGCTCAC+CGG + chr8.3:15208799-15208818 MS.gene033062:CDS 55.0%
TGAGGAGCCTGATTGGGCTA+AGG + chr8.3:15209552-15209571 MS.gene033062:intron 55.0%
TGCTTCAACACACAAGCCCG+AGG + chr8.3:15210164-15210183 MS.gene033062:CDS 55.0%
TGGAGATGGAGAGGAAGGAG+AGG + chr8.3:15209518-15209537 MS.gene033062:intron 55.0%
! GGGGTTTTCGGATTCCGGTA+AGG + chr8.3:15209075-15209094 MS.gene033062:CDS 55.0%
AGGTGAGGAGGAAGGCGAAG+AGG + chr8.3:15209362-15209381 MS.gene033062:intron 60.0%
CGAAGCCACCGCTCAGTTTC+AGG + chr8.3:15208901-15208920 MS.gene033062:CDS 60.0%
CGGTGGCTTCGGATTGAGAG+AGG - chr8.3:15208892-15208911 None:intergenic 60.0%
GGAGAGGAAGGAGAGGGCTA+TGG + chr8.3:15209525-15209544 MS.gene033062:intron 60.0%
GGTGAGGAGGAAGGCGAAGA+GGG + chr8.3:15209363-15209382 MS.gene033062:intron 60.0%
GTCCGAATAGGAAGTCGCGG+AGG + chr8.3:15209317-15209336 MS.gene033062:intron 60.0%
TCTTCCGGTGAGCATTCGCG+AGG - chr8.3:15208806-15208825 None:intergenic 60.0%
TGGTATCTGGGCACAAGGGC+CGG + chr8.3:15210040-15210059 MS.gene033062:intron 60.0%
! GGCGTTGGAGAGCGAGTTTC+CGG - chr8.3:15208844-15208863 None:intergenic 60.0%
!! GAAGTCGCGGAGGTTGATGG+AGG + chr8.3:15209327-15209346 MS.gene033062:intron 60.0%
CGAGCTTGTCAGGGTGGCGT+TGG - chr8.3:15208859-15208878 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 15208758 15211090 15208758 ID=MS.gene033062
chr8.3 mRNA 15208758 15211090 15208758 ID=MS.gene033062.t1;Parent=MS.gene033062
chr8.3 exon 15208758 15209234 15208758 ID=MS.gene033062.t1.exon1;Parent=MS.gene033062.t1
chr8.3 CDS 15208758 15209234 15208758 ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1
chr8.3 exon 15210057 15210560 15210057 ID=MS.gene033062.t1.exon2;Parent=MS.gene033062.t1
chr8.3 CDS 15210057 15210560 15210057 ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1
chr8.3 exon 15211085 15211090 15211085 ID=MS.gene033062.t1.exon3;Parent=MS.gene033062.t1
chr8.3 CDS 15211085 15211090 15211085 ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1
Gene Sequence

>MS.gene033062

ATGGCATCGACGGCGAAGCGATGCCACTACGAAGTTCTCGGTCTACCTCGCGAATGCTCACCGGAAGAACTCCGATCAGCTTACCGGAAACTCGCTCTCCAACGCCACCCTGACAAGCTCGTCAAATCAGGCCTCTCTCAATCCGAAGCCACCGCTCAGTTTCAGGAGCTACAACACGCCTATGAGGTACTCTCCGATCCAAAGGAACGAGCTTGGTACGATTCCCATCGTTCTCAAATCCTCTTCTCCGATCCAAATTCAAAGTCTAATTCCGTTGTCCCTGACCTGTTTTCGTTTTTCTCGAATACCGTATTTTCGGGGTTTTCGGATTCCGGTAAGGGTTTCTATAAGGTTTATTCTGATGTGTTTGATAAAATTCAGGCGAATGAGATTAATTTTGCTAAGAAATTAGGTTTAGGGATTGATTCTGTTAGACAGGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCGCAGGTTACGGCTTTTTATAGTTATTGGTTGGGATTTTCGACTGTTATGGATTTTTGTTGGGCGGATGAGTATGATGCGATGGCAGGTCCGAATAGGAAGTCGCGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCGAAGAGGGAGTATAATGATACTGTGAGAAAGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAAAGAGGAGGAGAAGGAGAGGAAGAGGAAGTTGGAGATGGAGAGGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAAGAAGAAGTTGAGGATTTGTATGAGGATGATGAGTTTGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGAGTAAGAAGCATAAGGAGAAAGTTGCTGAGTTCAAGGATTCACTTGATGATGAAGAGGAGTTAGAAGCTGAAGTGGACGAGGAAGGTGAAAGTGAAGGGGTTGGAGAGGAAAGATTAGAAAGTGAGGAGGATGGCGTTGGGGTTGATGATTTGGAAGAGAGAATTCGAGACAGTCTTAATGTTGCAGAAGACGAGAGTGCAAATGGGGTTGAGCCGAATGATGATGGTGACAATGATGAATTTTTTGATGCTGAGCATGCAGAAGATGAGGAGTTTGATGCGTCAGTTGATTTTGTTGTTAATGACGACGACGACGACGATGATGTTCTTGAAACAATGGTATCTGGGCACAAGGGCCGGTTTGATTTTGATGAGAATGATGGCAACGATGATGATGTTGATGATGATGAAATTGGGGTTCTTGAAGCAATGCTGGCTGGACGTAAGAGCAGAAAACCCAGTGCTTCAACACACAAGCCCGAGGCTTCTGAAACTCCAACTCAAATTGAGAGTGAGAATGAGAATGATGGGGTTGGTGCTATGGAATATAACAACCGAAAACCTGCAAAAAAGAAACGTAGAGCAAAGAAAGAGAAGGGTGGGAAAAATGGGGATGAAACTAATGTGCCTACTAATGGCAAATATGAGAAGAATGTAATCAATATTGGAGATGGCGATTCTTATGCACAAGAGTCTAGTTCCCAATATTTCGAGGAAAATGAGGATAATGGCGGTAAAGAGAATGAGCAGGTGGGTAGAGATAAGAAGAAGATTTCAAATCAACCGGTTGATAAAAAAGGAACTTCAAAGAACACAAAACCCAGATCAAAACTTTCAACCAGAGGAAGAAAACCAAATGTATGTTTTTATGAATATAATAACCTGTTCTGTTCCTGTATTGTGCCATGACTACTGAGATATGTATGTAGCTGTACCTGTTCTAATATACTGTTGTTGGTTTAGCAGTTTCGTTAACTTGAAAATCCTTGTTTTACTTCCAATTTTTTTGCTTTACTAAGTGTGGTTAATTTTGATGAAATTAAGAGGTCTGCTATCTTGACATGTTCAGATTTCCATTTTCTTGTTTATTATTCTGTGGTTTTTTTAAATTCACACATGTGAGGCATGTAGCCAGGATAACGTTGCTATGTTGTGTTCCATGTCTTCCATTAAACAGAAGCCTTTCTGCTCTATTCTGATTTCTTATTTTTTCTTTCTTTCTTGAATTAGAGAAATCTTGGTCATTTTTGCGAGACATGTGAGCAGGAGTTTGAGTCAAGGTAGATTTCCTCCCTCTTACTCATCAAATTTCAAGTTGTTCTCATCATTGTTTATGTTGTGAGGATAAATTGTTATATAACTTTGTTTTATTTTATTCTCAGGAATAA

Protein sequence

>MS.gene033062.t1

MASTAKRCHYEVLGLPRECSPEELRSAYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSKSNSVVPDLFSFFSNTVFSGFSDSGKGFYKVYSDVFDKIQANEINFAKKLGLGIDSVRQAPLMGNLDSPYAQGRFDFDENDGNDDDVDDDEIGVLEAMLAGRKSRKPSASTHKPEASETPTQIESENENDGVGAMEYNNRKPAKKKRRAKKEKGGKNGDETNVPTNGKYEKNVINIGDGDSYAQESSSQYFEENEDNGGKENEQVGRDKKKISNQPVDKKGTSKNTKPRSKLSTRGRKPNE