Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033062.t1 | XP_013457987.1 | 50.7 | 605 | 20 | 4 | 1 | 327 | 1 | 605 | 1.70E-122 | 449.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033062.t1 | Q9C911 | 71.3 | 167 | 40 | 3 | 1 | 159 | 1 | 167 | 7.2e-61 | 235.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033062.t1 | A0A072USH1 | 50.7 | 605 | 20 | 4 | 1 | 327 | 1 | 605 | 1.2e-122 | 449.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033062 | MS.gene28721 | PPI |
MS.gene033062 | MS.gene028350 | PPI |
MS.gene033062 | MS.gene36441 | PPI |
MS.gene033062 | MS.gene064542 | PPI |
MS.gene033062 | MS.gene35110 | PPI |
MS.gene033062 | MS.gene73119 | PPI |
MS.gene035805 | MS.gene033062 | PPI |
MS.gene033062 | MS.gene35108 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033062.t1 | MTR_4g109510 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 2.55e-113 | 342 |
MS.gene033062.t1 | MTR_4g109510 | 98.225 | 169 | 3 | 0 | 159 | 327 | 437 | 605 | 1.86e-111 | 337 |
MS.gene033062.t1 | MTR_3g070480 | 80.682 | 88 | 15 | 2 | 206 | 291 | 6 | 93 | 1.36e-27 | 104 |
MS.gene033062.t1 | MTR_7g112360 | 45.588 | 68 | 37 | 0 | 8 | 75 | 16 | 83 | 7.76e-16 | 73.2 |
MS.gene033062.t1 | MTR_7g112360 | 45.588 | 68 | 37 | 0 | 8 | 75 | 16 | 83 | 9.16e-16 | 74.3 |
MS.gene033062.t1 | MTR_8g022310 | 53.731 | 67 | 29 | 1 | 10 | 74 | 12 | 78 | 2.41e-15 | 73.9 |
MS.gene033062.t1 | MTR_8g022310 | 53.731 | 67 | 29 | 1 | 10 | 74 | 12 | 78 | 2.75e-15 | 73.9 |
MS.gene033062.t1 | MTR_8g022310 | 52.941 | 68 | 30 | 1 | 9 | 74 | 11 | 78 | 3.17e-15 | 73.9 |
MS.gene033062.t1 | MTR_8g022310 | 53.731 | 67 | 29 | 1 | 10 | 74 | 12 | 78 | 4.16e-15 | 73.9 |
MS.gene033062.t1 | MTR_4g085070 | 50.000 | 62 | 31 | 0 | 14 | 75 | 18 | 79 | 2.56e-13 | 67.0 |
MS.gene033062.t1 | MTR_1g110310 | 34.899 | 149 | 79 | 5 | 2 | 149 | 10 | 141 | 2.40e-12 | 67.8 |
MS.gene033062.t1 | MTR_6g026940 | 50.000 | 64 | 31 | 1 | 9 | 71 | 3 | 66 | 1.14e-11 | 63.2 |
MS.gene033062.t1 | MTR_6g027110 | 46.269 | 67 | 35 | 1 | 9 | 74 | 3 | 69 | 1.23e-11 | 62.0 |
MS.gene033062.t1 | MTR_2g104030 | 38.462 | 104 | 56 | 2 | 9 | 109 | 71 | 169 | 1.87e-11 | 65.1 |
MS.gene033062.t1 | MTR_2g014470 | 44.118 | 68 | 35 | 1 | 9 | 76 | 5 | 69 | 1.97e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033062.t1 | AT1G74250 | 71.257 | 167 | 40 | 3 | 1 | 159 | 1 | 167 | 7.10e-78 | 250 |
MS.gene033062.t1 | AT3G14200 | 53.846 | 65 | 29 | 1 | 10 | 74 | 14 | 77 | 2.36e-14 | 71.6 |
MS.gene033062.t1 | AT1G56300 | 38.889 | 72 | 44 | 0 | 3 | 74 | 8 | 79 | 5.72e-13 | 65.1 |
MS.gene033062.t1 | AT1G56300 | 38.889 | 72 | 44 | 0 | 3 | 74 | 8 | 79 | 5.92e-13 | 66.2 |
MS.gene033062.t1 | AT5G25530 | 35.345 | 116 | 59 | 5 | 9 | 112 | 5 | 116 | 2.31e-12 | 67.4 |
MS.gene033062.t1 | AT1G71000 | 41.892 | 74 | 43 | 0 | 1 | 74 | 1 | 74 | 2.66e-12 | 64.7 |
MS.gene033062.t1 | AT1G71000 | 41.892 | 74 | 43 | 0 | 1 | 74 | 1 | 74 | 4.88e-12 | 63.9 |
MS.gene033062.t1 | AT2G33735 | 43.243 | 74 | 38 | 1 | 9 | 82 | 23 | 92 | 3.75e-11 | 60.1 |
MS.gene033062.t1 | AT2G33735 | 43.243 | 74 | 38 | 1 | 9 | 82 | 23 | 92 | 3.75e-11 | 60.1 |
MS.gene033062.t1 | AT1G59980 | 44.595 | 74 | 37 | 1 | 6 | 79 | 21 | 90 | 3.80e-11 | 63.9 |
MS.gene033062.t1 | AT1G59980 | 44.595 | 74 | 37 | 1 | 6 | 79 | 21 | 90 | 4.37e-11 | 63.9 |
MS.gene033062.t1 | AT3G62600 | 42.105 | 76 | 40 | 1 | 1 | 76 | 19 | 90 | 7.47e-11 | 62.8 |
MS.gene033062.t1 | AT3G12170 | 41.758 | 91 | 45 | 2 | 10 | 100 | 13 | 95 | 7.87e-11 | 62.0 |
MS.gene033062.t1 | AT2G20560 | 44.118 | 68 | 35 | 1 | 9 | 76 | 5 | 69 | 9.11e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTCCTCTTATGGGGAATT+TGG | 0.141158 | 8.3:+15209195 | MS.gene033062:CDS |
ACGGAATTAGACTTTGAATT+TGG | 0.172659 | 8.3:-15209010 | None:intergenic |
CGAAGCCACCGCTCAGTTTC+AGG | 0.199966 | 8.3:+15208901 | MS.gene033062:CDS |
TTGCTAAGAAATTAGGTTTA+GGG | 0.251194 | 8.3:+15209155 | MS.gene033062:CDS |
TGTTAGACAGGCTCCTCTTA+TGG | 0.265835 | 8.3:+15209186 | MS.gene033062:CDS |
GGCGTTGGAGAGCGAGTTTC+CGG | 0.265860 | 8.3:-15208841 | None:intergenic |
TTTGCTAAGAAATTAGGTTT+AGG | 0.269838 | 8.3:+15209154 | MS.gene033062:CDS |
TGATGTGTTTGATAAAATTC+AGG | 0.297358 | 8.3:+15209117 | MS.gene033062:CDS |
GAGAAGAATGTAATCAATAT+TGG | 0.312751 | 8.3:+15210348 | MS.gene033062:CDS |
TTCCGGTAAGGGTTTCTATA+AGG | 0.322734 | 8.3:+15209087 | MS.gene033062:CDS |
GATGTTGATGATGATGAAAT+TGG | 0.336996 | 8.3:+15210096 | MS.gene033062:CDS |
CCTGATTTGACGAGCTTGTC+AGG | 0.337742 | 8.3:-15208866 | None:intergenic |
GTTAGACAGGCTCCTCTTAT+GGG | 0.353059 | 8.3:+15209187 | MS.gene033062:CDS |
AAGAACTCCGATCAGCTTAC+CGG | 0.367180 | 8.3:+15208822 | MS.gene033062:CDS |
GGGCTTGTGTGTTGAAGCAC+TGG | 0.368221 | 8.3:-15210160 | None:intergenic |
ATGTTGATGATGATGAAATT+GGG | 0.378497 | 8.3:+15210097 | MS.gene033062:CDS |
CCTGACAAGCTCGTCAAATC+AGG | 0.380161 | 8.3:+15208866 | MS.gene033062:CDS |
TAAGCTGATCGGAGTTCTTC+CGG | 0.384438 | 8.3:-15208818 | None:intergenic |
CTGAAACTGAGCGGTGGCTT+CGG | 0.388334 | 8.3:-15208900 | None:intergenic |
TCGTACCAAGCTCGTTCCTT+TGG | 0.399711 | 8.3:-15208956 | None:intergenic |
GAAGAAGATTTCAAATCAAC+CGG | 0.408421 | 8.3:+15210467 | MS.gene033062:CDS |
GAAACTAATGTGCCTACTAA+TGG | 0.414627 | 8.3:+15210318 | MS.gene033062:CDS |
TTCTCACTCTCAATTTGAGT+TGG | 0.428513 | 8.3:-15210198 | None:intergenic |
ATCCGAAAACCCCGAAAATA+CGG | 0.430044 | 8.3:-15209065 | None:intergenic |
AGGGATTGATTCTGTTAGAC+AGG | 0.434136 | 8.3:+15209174 | MS.gene033062:CDS |
TTCGAGGAAAATGAGGATAA+TGG | 0.435391 | 8.3:+15210411 | MS.gene033062:CDS |
AAAGCCGTAACCTGCGCATA+AGG | 0.439715 | 8.3:-15209223 | None:intergenic |
AACCTTATAGAAACCCTTAC+CGG | 0.442360 | 8.3:-15209089 | None:intergenic |
CGATGCCACTACGAAGTTCT+CGG | 0.443193 | 8.3:+15208776 | MS.gene033062:CDS |
TTCTCATATTTGCCATTAGT+AGG | 0.462771 | 8.3:-15210330 | None:intergenic |
CGAGCTTGTCAGGGTGGCGT+TGG | 0.466381 | 8.3:-15208856 | None:intergenic |
CTATCCAAATTCCCCATAAG+AGG | 0.477965 | 8.3:-15209199 | None:intergenic |
GAATGATGGGGTTGGTGCTA+TGG | 0.478029 | 8.3:+15210224 | MS.gene033062:CDS |
GTCTAGTTCCCAATATTTCG+AGG | 0.480169 | 8.3:+15210395 | MS.gene033062:CDS |
CCAATATTTCGAGGAAAATG+AGG | 0.482316 | 8.3:+15210404 | MS.gene033062:CDS |
GTTCTTGAAGCAATGCTGGC+TGG | 0.482368 | 8.3:+15210120 | MS.gene033062:CDS |
TGGGGTTCTTGAAGCAATGC+TGG | 0.483544 | 8.3:+15210116 | MS.gene033062:CDS |
AGTTGGAGTTTCAGAAGCCT+CGG | 0.497718 | 8.3:-15210181 | None:intergenic |
GGCTTGTGTGTTGAAGCACT+GGG | 0.501875 | 8.3:-15210159 | None:intergenic |
GAGAGTGAGAATGAGAATGA+TGG | 0.521962 | 8.3:+15210210 | MS.gene033062:CDS |
TGGATCGGAGAGTACCTCAT+AGG | 0.522444 | 8.3:-15208936 | None:intergenic |
CGAAGCAACAATGGCATCGA+CGG | 0.524518 | 8.3:+15208748 | None:intergenic |
CATTCTCATCAAAATCAAAC+CGG | 0.526287 | 8.3:-15210059 | None:intergenic |
CGAGTTTCCGGTAAGCTGAT+CGG | 0.532549 | 8.3:-15208829 | None:intergenic |
ATTAGACTTTGAATTTGGAT+CGG | 0.533157 | 8.3:-15209005 | None:intergenic |
AGAGTGAGAATGAGAATGAT+GGG | 0.534818 | 8.3:+15210211 | MS.gene033062:CDS |
TTGAATTTGGATCGGAGAAG+AGG | 0.548637 | 8.3:-15208997 | None:intergenic |
AATGTAATCAATATTGGAGA+TGG | 0.550622 | 8.3:+15210354 | MS.gene033062:CDS |
GAAGAGGATTTGAGAACGAT+GGG | 0.554440 | 8.3:-15208981 | None:intergenic |
CCAAGCTCGTTCCTTTGGAT+CGG | 0.555573 | 8.3:-15208951 | None:intergenic |
GTTGGAGTTTCAGAAGCCTC+GGG | 0.557564 | 8.3:-15210180 | None:intergenic |
AGAAGAGGATTTGAGAACGA+TGG | 0.558151 | 8.3:-15208982 | None:intergenic |
CCGATCCAAAGGAACGAGCT+TGG | 0.558363 | 8.3:+15208951 | MS.gene033062:CDS |
CGAAAACAGGTCAGGGACAA+CGG | 0.566006 | 8.3:-15209029 | None:intergenic |
TTTGGATAGTCCTTATGCGC+AGG | 0.567782 | 8.3:+15209213 | MS.gene033062:CDS |
GAGCAAAGAAAGAGAAGGGT+GGG | 0.568242 | 8.3:+15210283 | MS.gene033062:CDS |
TCTACCTCGCGAATGCTCAC+CGG | 0.571563 | 8.3:+15208799 | MS.gene033062:CDS |
CTGATTTGACGAGCTTGTCA+GGG | 0.572375 | 8.3:-15208865 | None:intergenic |
GGAGCTACAACACGCCTATG+AGG | 0.575033 | 8.3:+15208922 | MS.gene033062:CDS |
CGGTGGCTTCGGATTGAGAG+AGG | 0.580013 | 8.3:-15208889 | None:intergenic |
ACGTAGAGCAAAGAAAGAGA+AGG | 0.595059 | 8.3:+15210278 | MS.gene033062:CDS |
TGAGGTACTCTCCGATCCAA+AGG | 0.600261 | 8.3:+15208940 | MS.gene033062:CDS |
CGGTAAAGAGAATGAGCAGG+TGG | 0.606870 | 8.3:+15210434 | MS.gene033062:CDS |
TTAGACAGGCTCCTCTTATG+GGG | 0.611836 | 8.3:+15209188 | MS.gene033062:CDS |
TGGCGGTAAAGAGAATGAGC+AGG | 0.613961 | 8.3:+15210431 | MS.gene033062:CDS |
CGTAGAGCAAAGAAAGAGAA+GGG | 0.619612 | 8.3:+15210279 | MS.gene033062:CDS |
TGTTGATGATGATGAAATTG+GGG | 0.621284 | 8.3:+15210098 | MS.gene033062:CDS |
GAGAATGAGAATGATGGGGT+TGG | 0.635119 | 8.3:+15210216 | MS.gene033062:CDS |
ATTTGACGAGCTTGTCAGGG+TGG | 0.643119 | 8.3:-15208862 | None:intergenic |
AGAGCAAAGAAAGAGAAGGG+TGG | 0.655964 | 8.3:+15210282 | MS.gene033062:CDS |
TGCTTCAACACACAAGCCCG+AGG | 0.660773 | 8.3:+15210164 | MS.gene033062:CDS |
TAGCTCCTGAAACTGAGCGG+TGG | 0.662261 | 8.3:-15208906 | None:intergenic |
AGATCAAAACTTTCAACCAG+AGG | 0.672866 | 8.3:+15210525 | MS.gene033062:CDS |
TCTTCCGGTGAGCATTCGCG+AGG | 0.687306 | 8.3:-15208803 | None:intergenic |
GGTAAAGAGAATGAGCAGGT+GGG | 0.690040 | 8.3:+15210435 | MS.gene033062:CDS |
GAGGAAAATGAGGATAATGG+CGG | 0.690575 | 8.3:+15210414 | MS.gene033062:CDS |
GAGTGAGAATGAGAATGATG+GGG | 0.711594 | 8.3:+15210212 | MS.gene033062:CDS |
GTAGACCGAGAACTTCGTAG+TGG | 0.735555 | 8.3:-15208781 | None:intergenic |
TTGTAGCTCCTGAAACTGAG+CGG | 0.736164 | 8.3:-15208909 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTCATAAAAACATACATT+TGG | - | chr8.3:15210558-15210577 | None:intergenic | 15.0% |
!!! | ATTAATTTTGCTAAGAAATT+AGG | + | chr8.3:15209148-15209167 | MS.gene033062:CDS | 15.0% |
!!! | TTAATTTTGATGAAATTAAG+AGG | + | chr8.3:15210727-15210746 | MS.gene033062:intron | 15.0% |
!! | AAAAAATTGGAAGTAAAACA+AGG | - | chr8.3:15210690-15210709 | None:intergenic | 20.0% |
!! | ACTTAGTAAAGCAAAAAAAT+TGG | - | chr8.3:15210703-15210722 | None:intergenic | 20.0% |
!! | CAGAATAATAAACAAGAAAA+TGG | - | chr8.3:15210779-15210798 | None:intergenic | 20.0% |
!!! | CTTTGTTTTATTTTATTCTC+AGG | + | chr8.3:15211063-15211082 | MS.gene033062:intron | 20.0% |
!!! | TTTTCTTGTTTATTATTCTG+TGG | + | chr8.3:15210779-15210798 | MS.gene033062:intron | 20.0% |
! | AATGTAATCAATATTGGAGA+TGG | + | chr8.3:15210354-15210373 | MS.gene033062:CDS | 25.0% |
! | ATTAGACTTTGAATTTGGAT+CGG | - | chr8.3:15209008-15209027 | None:intergenic | 25.0% |
! | GAGAAGAATGTAATCAATAT+TGG | + | chr8.3:15210348-15210367 | MS.gene033062:CDS | 25.0% |
! | TGATGTGTTTGATAAAATTC+AGG | + | chr8.3:15209117-15209136 | MS.gene033062:CDS | 25.0% |
! | TTCTTGAATTAGAGAAATCT+TGG | + | chr8.3:15210921-15210940 | MS.gene033062:intron | 25.0% |
! | TTGAAATTTGATGAGTAAGA+GGG | - | chr8.3:15210997-15211016 | None:intergenic | 25.0% |
! | TTGCTAAGAAATTAGGTTTA+GGG | + | chr8.3:15209155-15209174 | MS.gene033062:CDS | 25.0% |
! | TTTGCTAAGAAATTAGGTTT+AGG | + | chr8.3:15209154-15209173 | MS.gene033062:CDS | 25.0% |
!! | TTACGGCTTTTTATAGTTAT+TGG | + | chr8.3:15209236-15209255 | MS.gene033062:intron | 25.0% |
!! | TTTTTAAATTCACACATGTG+AGG | + | chr8.3:15210804-15210823 | MS.gene033062:intron | 25.0% |
!!! | ATGTTGATGATGATGAAATT+GGG | + | chr8.3:15210097-15210116 | MS.gene033062:CDS | 25.0% |
!!! | GCTTTTTATAGTTATTGGTT+GGG | + | chr8.3:15209241-15209260 | MS.gene033062:intron | 25.0% |
!!! | TTTGATTTTGATGAGAATGA+TGG | + | chr8.3:15210063-15210082 | MS.gene033062:CDS | 25.0% |
!!! | TTTTTTTGCTTTACTAAGTG+TGG | + | chr8.3:15210704-15210723 | MS.gene033062:intron | 25.0% |
ACGGAATTAGACTTTGAATT+TGG | - | chr8.3:15209013-15209032 | None:intergenic | 30.0% | |
CAACAACAGTATATTAGAAC+AGG | - | chr8.3:15210640-15210659 | None:intergenic | 30.0% | |
CATTCTCATCAAAATCAAAC+CGG | - | chr8.3:15210062-15210081 | None:intergenic | 30.0% | |
CTGTTCTAATATACTGTTGT+TGG | + | chr8.3:15210638-15210657 | MS.gene033062:intron | 30.0% | |
CTTGAAATTTGATGAGTAAG+AGG | - | chr8.3:15210998-15211017 | None:intergenic | 30.0% | |
GAAGAAGATTTCAAATCAAC+CGG | + | chr8.3:15210467-15210486 | MS.gene033062:CDS | 30.0% | |
TAAGAGAGTGATTGATATGA+AGG | + | chr8.3:15209435-15209454 | MS.gene033062:intron | 30.0% | |
TAATGATACTGTGAGAAAGT+TGG | + | chr8.3:15209390-15209409 | MS.gene033062:intron | 30.0% | |
TATGAAGGTGAAGAAGAATT+TGG | + | chr8.3:15209450-15209469 | MS.gene033062:intron | 30.0% | |
TATTCGAGAAAAACGAAAAC+AGG | - | chr8.3:15209045-15209064 | None:intergenic | 30.0% | |
TCATCATTGTTTATGTTGTG+AGG | + | chr8.3:15211024-15211043 | MS.gene033062:intron | 30.0% | |
TTCTCATATTTGCCATTAGT+AGG | - | chr8.3:15210333-15210352 | None:intergenic | 30.0% | |
TTCTTGAAACAATGGTATCT+GGG | + | chr8.3:15210028-15210047 | MS.gene033062:intron | 30.0% | |
! | CTCATTTTCCTCGAAATATT+GGG | - | chr8.3:15210406-15210425 | None:intergenic | 30.0% |
! | GACTGTTATGGATTTTTGTT+GGG | + | chr8.3:15209270-15209289 | MS.gene033062:intron | 30.0% |
! | GGCTTTTTATAGTTATTGGT+TGG | + | chr8.3:15209240-15209259 | MS.gene033062:intron | 30.0% |
! | TTTCTCGAATACCGTATTTT+CGG | + | chr8.3:15209054-15209073 | MS.gene033062:CDS | 30.0% |
!! | AATCAACCGGTTGATAAAAA+AGG | + | chr8.3:15210480-15210499 | MS.gene033062:CDS | 30.0% |
!! | GATGTTGATGATGATGAAAT+TGG | + | chr8.3:15210096-15210115 | MS.gene033062:CDS | 30.0% |
!! | TGTTGATGATGATGAAATTG+GGG | + | chr8.3:15210098-15210117 | MS.gene033062:CDS | 30.0% |
!!! | AGTTTTATTGTGTGTTGTGT+GGG | + | chr8.3:15209638-15209657 | MS.gene033062:intron | 30.0% |
!!! | GAAGTTCCTTTTTTATCAAC+CGG | - | chr8.3:15210489-15210508 | None:intergenic | 30.0% |
!!! | GTTTCTTTTTTGCAGGTTTT+CGG | - | chr8.3:15210260-15210279 | None:intergenic | 30.0% |
AAATTTGATGAGTAAGAGGG+AGG | - | chr8.3:15210994-15211013 | None:intergenic | 35.0% | |
AACCTTATAGAAACCCTTAC+CGG | - | chr8.3:15209092-15209111 | None:intergenic | 35.0% | |
AAGAGAATAATAAGGTGAGG+AGG | + | chr8.3:15209350-15209369 | MS.gene033062:intron | 35.0% | |
AGAAAAACGAAAACAGGTCA+GGG | - | chr8.3:15209039-15209058 | None:intergenic | 35.0% | |
AGAAGTTGAGGATTTGTATG+AGG | + | chr8.3:15209585-15209604 | MS.gene033062:intron | 35.0% | |
AGAGGAAAGATTAGAAAGTG+AGG | + | chr8.3:15209807-15209826 | MS.gene033062:intron | 35.0% | |
AGAGTGAGAATGAGAATGAT+GGG | + | chr8.3:15210211-15210230 | MS.gene033062:CDS | 35.0% | |
AGATCAAAACTTTCAACCAG+AGG | + | chr8.3:15210525-15210544 | MS.gene033062:CDS | 35.0% | |
AGGAAGAGAATAATAAGGTG+AGG | + | chr8.3:15209347-15209366 | MS.gene033062:intron | 35.0% | |
AGTTTAAGAGTGAGAAGCAA+TGG | + | chr8.3:15209665-15209684 | MS.gene033062:intron | 35.0% | |
CATACATATCTCAGTAGTCA+TGG | - | chr8.3:15210609-15210628 | None:intergenic | 35.0% | |
CCAATATTTCGAGGAAAATG+AGG | + | chr8.3:15210404-15210423 | MS.gene033062:CDS | 35.0% | |
CGATGATGTTCTTGAAACAA+TGG | + | chr8.3:15210020-15210039 | MS.gene033062:intron | 35.0% | |
CTTCTGTTTAATGGAAGACA+TGG | - | chr8.3:15210863-15210882 | None:intergenic | 35.0% | |
GAAACTAATGTGCCTACTAA+TGG | + | chr8.3:15210318-15210337 | MS.gene033062:CDS | 35.0% | |
GAAATCAGAATAGAGCAGAA+AGG | - | chr8.3:15210886-15210905 | None:intergenic | 35.0% | |
GATGGAGGAAGAGAATAATA+AGG | + | chr8.3:15209342-15209361 | MS.gene033062:intron | 35.0% | |
GTTCTTGAAACAATGGTATC+TGG | + | chr8.3:15210027-15210046 | MS.gene033062:intron | 35.0% | |
GTTTGAGAAGAAAGATGAGA+AGG | + | chr8.3:15209615-15209634 | MS.gene033062:intron | 35.0% | |
TCATTGTCACCATCATCATT+CGG | - | chr8.3:15209919-15209938 | None:intergenic | 35.0% | |
TTCGAGGAAAATGAGGATAA+TGG | + | chr8.3:15210411-15210430 | MS.gene033062:CDS | 35.0% | |
TTCTCACTCTCAATTTGAGT+TGG | - | chr8.3:15210201-15210220 | None:intergenic | 35.0% | |
! | CCTCATTTTCCTCGAAATAT+TGG | - | chr8.3:15210407-15210426 | None:intergenic | 35.0% |
! | CGACTGTTATGGATTTTTGT+TGG | + | chr8.3:15209269-15209288 | MS.gene033062:intron | 35.0% |
! | TGTTATGGATTTTTGTTGGG+CGG | + | chr8.3:15209273-15209292 | MS.gene033062:intron | 35.0% |
! | TTCTCGAATACCGTATTTTC+GGG | + | chr8.3:15209055-15209074 | MS.gene033062:CDS | 35.0% |
!! | CTGGTTGAAAGTTTTGATCT+GGG | - | chr8.3:15210525-15210544 | None:intergenic | 35.0% |
!! | TCTGGTTGAAAGTTTTGATC+TGG | - | chr8.3:15210526-15210545 | None:intergenic | 35.0% |
!!! | GAGTTTTATTGTGTGTTGTG+TGG | + | chr8.3:15209637-15209656 | MS.gene033062:intron | 35.0% |
!!! | TACATTTGGTTTTCTTCCTC+TGG | - | chr8.3:15210544-15210563 | None:intergenic | 35.0% |
AAAGAGAAGGGTGGGAAAAA+TGG | + | chr8.3:15210291-15210310 | MS.gene033062:CDS | 40.0% | |
AAGAGAAGGGTGGGAAAAAT+GGG | + | chr8.3:15210292-15210311 | MS.gene033062:CDS | 40.0% | |
ACAACATAGCAACGTTATCC+TGG | - | chr8.3:15210837-15210856 | None:intergenic | 40.0% | |
ACGTAGAGCAAAGAAAGAGA+AGG | + | chr8.3:15210278-15210297 | MS.gene033062:CDS | 40.0% | |
AGAAGAGGATTTGAGAACGA+TGG | - | chr8.3:15208985-15209004 | None:intergenic | 40.0% | |
AGATTAGAAAGTGAGGAGGA+TGG | + | chr8.3:15209814-15209833 | MS.gene033062:intron | 40.0% | |
ATCCGAAAACCCCGAAAATA+CGG | - | chr8.3:15209068-15209087 | None:intergenic | 40.0% | |
CGTAGAGCAAAGAAAGAGAA+GGG | + | chr8.3:15210279-15210298 | MS.gene033062:CDS | 40.0% | |
CTATCCAAATTCCCCATAAG+AGG | - | chr8.3:15209202-15209221 | None:intergenic | 40.0% | |
GAAGAGGATTTGAGAACGAT+GGG | - | chr8.3:15208984-15209003 | None:intergenic | 40.0% | |
GAATAATAAGGTGAGGAGGA+AGG | + | chr8.3:15209354-15209373 | MS.gene033062:intron | 40.0% | |
GAGAAAAACGAAAACAGGTC+AGG | - | chr8.3:15209040-15209059 | None:intergenic | 40.0% | |
GAGAGTGAGAATGAGAATGA+TGG | + | chr8.3:15210210-15210229 | MS.gene033062:CDS | 40.0% | |
GAGTGAGAATGAGAATGATG+GGG | + | chr8.3:15210212-15210231 | MS.gene033062:CDS | 40.0% | |
GCAGAAAGGCTTCTGTTTAA+TGG | - | chr8.3:15210872-15210891 | None:intergenic | 40.0% | |
GGAAAGATTAGAAAGTGAGG+AGG | + | chr8.3:15209810-15209829 | MS.gene033062:intron | 40.0% | |
GGTGAAGAAGAATTTGGAGA+TGG | + | chr8.3:15209456-15209475 | MS.gene033062:intron | 40.0% | |
TTCCGGTAAGGGTTTCTATA+AGG | + | chr8.3:15209087-15209106 | MS.gene033062:CDS | 40.0% | |
TTGAATTTGGATCGGAGAAG+AGG | - | chr8.3:15209000-15209019 | None:intergenic | 40.0% | |
! | AGGGATTGATTCTGTTAGAC+AGG | + | chr8.3:15209174-15209193 | MS.gene033062:CDS | 40.0% |
! | GAGGAAAATGAGGATAATGG+CGG | + | chr8.3:15210414-15210433 | MS.gene033062:CDS | 40.0% |
! | GTCTAGTTCCCAATATTTCG+AGG | + | chr8.3:15210395-15210414 | MS.gene033062:CDS | 40.0% |
! | GTTGGGATTTTCGACTGTTA+TGG | + | chr8.3:15209258-15209277 | MS.gene033062:intron | 40.0% |
! | TCTCGAATACCGTATTTTCG+GGG | + | chr8.3:15209056-15209075 | MS.gene033062:CDS | 40.0% |
! | TGAGCAGAGTAAGAAGCATA+AGG | + | chr8.3:15209696-15209715 | MS.gene033062:intron | 40.0% |
!! | GGATTCACTTGATGATGAAG+AGG | + | chr8.3:15209738-15209757 | MS.gene033062:intron | 40.0% |
!! | GGCTGATTTTGTGAAGAAGA+GGG | + | chr8.3:15209411-15209430 | MS.gene033062:intron | 40.0% |
!! | GGTTGATGAAGAAGAAGTTG+AGG | + | chr8.3:15209573-15209592 | MS.gene033062:intron | 40.0% |
!! | TACCGTATTTTCGGGGTTTT+CGG | + | chr8.3:15209063-15209082 | MS.gene033062:CDS | 40.0% |
!! | TGGCTGATTTTGTGAAGAAG+AGG | + | chr8.3:15209410-15209429 | MS.gene033062:intron | 40.0% |
!!! | GCTCTACGTTTCTTTTTTGC+AGG | - | chr8.3:15210267-15210286 | None:intergenic | 40.0% |
AACAATGGTATCTGGGCACA+AGG | + | chr8.3:15210035-15210054 | MS.gene033062:intron | 45.0% | |
AAGAACTCCGATCAGCTTAC+CGG | + | chr8.3:15208822-15208841 | MS.gene033062:CDS | 45.0% | |
ACAATGGTATCTGGGCACAA+GGG | + | chr8.3:15210036-15210055 | MS.gene033062:intron | 45.0% | |
ACGAGGAAGGTGAAAGTGAA+GGG | + | chr8.3:15209779-15209798 | MS.gene033062:intron | 45.0% | |
AGAGAAGGGTGGGAAAAATG+GGG | + | chr8.3:15210293-15210312 | MS.gene033062:CDS | 45.0% | |
AGAGCAAAGAAAGAGAAGGG+TGG | + | chr8.3:15210282-15210301 | MS.gene033062:CDS | 45.0% | |
AGAGGAGTTAGAAGCTGAAG+TGG | + | chr8.3:15209756-15209775 | MS.gene033062:intron | 45.0% | |
AGTTGGAGTTTCAGAAGCCT+CGG | - | chr8.3:15210184-15210203 | None:intergenic | 45.0% | |
CAGTAGTCATGGCACAATAC+AGG | - | chr8.3:15210598-15210617 | None:intergenic | 45.0% | |
GAAGAAGAAAGAGGAGGAGA+AGG | + | chr8.3:15209480-15209499 | MS.gene033062:intron | 45.0% | |
GAGCAAAGAAAGAGAAGGGT+GGG | + | chr8.3:15210283-15210302 | MS.gene033062:CDS | 45.0% | |
GATGGAGAAGAAGAAAGAGG+AGG | + | chr8.3:15209474-15209493 | MS.gene033062:intron | 45.0% | |
GCACAATACAGGAACAGAAC+AGG | - | chr8.3:15210587-15210606 | None:intergenic | 45.0% | |
GGAGAAAGTTGCTGAGTTCA+AGG | + | chr8.3:15209717-15209736 | MS.gene033062:intron | 45.0% | |
GGAGATGGAGAAGAAGAAAG+AGG | + | chr8.3:15209471-15209490 | MS.gene033062:intron | 45.0% | |
GGTAAAGAGAATGAGCAGGT+GGG | + | chr8.3:15210435-15210454 | MS.gene033062:CDS | 45.0% | |
GTTAGACAGGCTCCTCTTAT+GGG | + | chr8.3:15209187-15209206 | MS.gene033062:CDS | 45.0% | |
TAAGCTGATCGGAGTTCTTC+CGG | - | chr8.3:15208821-15208840 | None:intergenic | 45.0% | |
TAGTCCTTATGCGCAGGTTA+CGG | + | chr8.3:15209219-15209238 | MS.gene033062:intron | 45.0% | |
TCATCAACCTTAGCCCAATC+AGG | - | chr8.3:15209562-15209581 | None:intergenic | 45.0% | |
TGTTAGACAGGCTCCTCTTA+TGG | + | chr8.3:15209186-15209205 | MS.gene033062:CDS | 45.0% | |
TTAGACAGGCTCCTCTTATG+GGG | + | chr8.3:15209188-15209207 | MS.gene033062:CDS | 45.0% | |
TTGTAGCTCCTGAAACTGAG+CGG | - | chr8.3:15208912-15208931 | None:intergenic | 45.0% | |
TTTGGATAGTCCTTATGCGC+AGG | + | chr8.3:15209213-15209232 | MS.gene033062:CDS | 45.0% | |
! | AGAAGACGAGAGTGCAAATG+GGG | + | chr8.3:15209888-15209907 | MS.gene033062:intron | 45.0% |
! | CAGAAGACGAGAGTGCAAAT+GGG | + | chr8.3:15209887-15209906 | MS.gene033062:intron | 45.0% |
! | CTGATTTGACGAGCTTGTCA+GGG | - | chr8.3:15208868-15208887 | None:intergenic | 45.0% |
! | GAGAATGAGAATGATGGGGT+TGG | + | chr8.3:15210216-15210235 | MS.gene033062:CDS | 45.0% |
! | TTTTTGCGAGACATGTGAGC+AGG | + | chr8.3:15210947-15210966 | MS.gene033062:intron | 45.0% |
!! | TTTTCGGGGTTTTCGGATTC+CGG | + | chr8.3:15209070-15209089 | MS.gene033062:CDS | 45.0% |
AAAGCCGTAACCTGCGCATA+AGG | - | chr8.3:15209226-15209245 | None:intergenic | 50.0% | |
AAAGTGAGGAGGATGGCGTT+GGG | + | chr8.3:15209821-15209840 | MS.gene033062:intron | 50.0% | |
AACCTCCGCGACTTCCTATT+CGG | - | chr8.3:15209322-15209341 | None:intergenic | 50.0% | |
AGAAAGAGGAGGAGAAGGAG+AGG | + | chr8.3:15209485-15209504 | MS.gene033062:intron | 50.0% | |
AGAGGAAGTTGGAGATGGAG+AGG | + | chr8.3:15209509-15209528 | MS.gene033062:intron | 50.0% | |
ATTTGACGAGCTTGTCAGGG+TGG | - | chr8.3:15208865-15208884 | None:intergenic | 50.0% | |
CCAAGCTCGTTCCTTTGGAT+CGG | - | chr8.3:15208954-15208973 | None:intergenic | 50.0% | |
CCTGACAAGCTCGTCAAATC+AGG | + | chr8.3:15208866-15208885 | MS.gene033062:CDS | 50.0% | |
CGAAAACAGGTCAGGGACAA+CGG | - | chr8.3:15209032-15209051 | None:intergenic | 50.0% | |
CGAGGAAGGTGAAAGTGAAG+GGG | + | chr8.3:15209780-15209799 | MS.gene033062:intron | 50.0% | |
CGAGTTTCCGGTAAGCTGAT+CGG | - | chr8.3:15208832-15208851 | None:intergenic | 50.0% | |
CGATGCCACTACGAAGTTCT+CGG | + | chr8.3:15208776-15208795 | MS.gene033062:CDS | 50.0% | |
CGGTAAAGAGAATGAGCAGG+TGG | + | chr8.3:15210434-15210453 | MS.gene033062:CDS | 50.0% | |
GAAGGAGAGGAAGAGGAAGT+TGG | + | chr8.3:15209498-15209517 | MS.gene033062:intron | 50.0% | |
GAAGGTGAAAGTGAAGGGGT+TGG | + | chr8.3:15209784-15209803 | MS.gene033062:intron | 50.0% | |
GAAGTTGGAGATGGAGAGGA+AGG | + | chr8.3:15209513-15209532 | MS.gene033062:intron | 50.0% | |
GACGAGGAAGGTGAAAGTGA+AGG | + | chr8.3:15209778-15209797 | MS.gene033062:intron | 50.0% | |
GAGGAAGAGGAAGTTGGAGA+TGG | + | chr8.3:15209504-15209523 | MS.gene033062:intron | 50.0% | |
GATGAGTATGATGCGATGGC+AGG | + | chr8.3:15209295-15209314 | MS.gene033062:intron | 50.0% | |
GGCTCCTCTTATGGGGAATT+TGG | + | chr8.3:15209195-15209214 | MS.gene033062:CDS | 50.0% | |
GGCTTATGAGGAGCCTGATT+GGG | + | chr8.3:15209546-15209565 | MS.gene033062:intron | 50.0% | |
GTAGACCGAGAACTTCGTAG+TGG | - | chr8.3:15208784-15208803 | None:intergenic | 50.0% | |
GTGAGCAGGAGTTTGAGTCA+AGG | + | chr8.3:15210961-15210980 | MS.gene033062:intron | 50.0% | |
GTTAGAAGCTGAAGTGGACG+AGG | + | chr8.3:15209762-15209781 | MS.gene033062:intron | 50.0% | |
GTTCTTGAAGCAATGCTGGC+TGG | + | chr8.3:15210120-15210139 | MS.gene033062:CDS | 50.0% | |
GTTGGAGTTTCAGAAGCCTC+GGG | - | chr8.3:15210183-15210202 | None:intergenic | 50.0% | |
TCGTACCAAGCTCGTTCCTT+TGG | - | chr8.3:15208959-15208978 | None:intergenic | 50.0% | |
TGAAAGTGAAGGGGTTGGAG+AGG | + | chr8.3:15209789-15209808 | MS.gene033062:intron | 50.0% | |
TGCTGAGCATGCAGAAGATG+AGG | + | chr8.3:15209951-15209970 | MS.gene033062:intron | 50.0% | |
TGGCGGTAAAGAGAATGAGC+AGG | + | chr8.3:15210431-15210450 | MS.gene033062:CDS | 50.0% | |
TGGCTTATGAGGAGCCTGAT+TGG | + | chr8.3:15209545-15209564 | MS.gene033062:intron | 50.0% | |
TGGGGTTCTTGAAGCAATGC+TGG | + | chr8.3:15210116-15210135 | MS.gene033062:CDS | 50.0% | |
! | CCTGATTTGACGAGCTTGTC+AGG | - | chr8.3:15208869-15208888 | None:intergenic | 50.0% |
! | GCAGAAGACGAGAGTGCAAA+TGG | + | chr8.3:15209886-15209905 | MS.gene033062:intron | 50.0% |
! | GGCTTGTGTGTTGAAGCACT+GGG | - | chr8.3:15210162-15210181 | None:intergenic | 50.0% |
! | GGGTTTTCGGATTCCGGTAA+GGG | + | chr8.3:15209076-15209095 | MS.gene033062:CDS | 50.0% |
! | TGAGGTACTCTCCGATCCAA+AGG | + | chr8.3:15208940-15208959 | MS.gene033062:CDS | 50.0% |
!! | GAATGATGGGGTTGGTGCTA+TGG | + | chr8.3:15210224-15210243 | MS.gene033062:CDS | 50.0% |
!! | TGGATCGGAGAGTACCTCAT+AGG | - | chr8.3:15208939-15208958 | None:intergenic | 50.0% |
!! | TGGCGTTGGGGTTGATGATT+TGG | + | chr8.3:15209834-15209853 | MS.gene033062:intron | 50.0% |
AAGTGAGGAGGATGGCGTTG+GGG | + | chr8.3:15209822-15209841 | MS.gene033062:intron | 55.0% | |
AGGAGGAGAAGGAGAGGAAG+AGG | + | chr8.3:15209491-15209510 | MS.gene033062:intron | 55.0% | |
ATGCGATGGCAGGTCCGAAT+AGG | + | chr8.3:15209305-15209324 | MS.gene033062:intron | 55.0% | |
CACATGTGAGGCATGTAGCC+AGG | + | chr8.3:15210816-15210835 | MS.gene033062:intron | 55.0% | |
CAGGTCCGAATAGGAAGTCG+CGG | + | chr8.3:15209314-15209333 | MS.gene033062:intron | 55.0% | |
CCGATCCAAAGGAACGAGCT+TGG | + | chr8.3:15208951-15208970 | MS.gene033062:CDS | 55.0% | |
CTGAAACTGAGCGGTGGCTT+CGG | - | chr8.3:15208903-15208922 | None:intergenic | 55.0% | |
GAAAGTGAGGAGGATGGCGT+TGG | + | chr8.3:15209820-15209839 | MS.gene033062:intron | 55.0% | |
GAAGCTGAAGTGGACGAGGA+AGG | + | chr8.3:15209766-15209785 | MS.gene033062:intron | 55.0% | |
GGAGAGGGCTATGGCTTATG+AGG | + | chr8.3:15209534-15209553 | MS.gene033062:intron | 55.0% | |
GGAGATGGAGAGGAAGGAGA+GGG | + | chr8.3:15209519-15209538 | MS.gene033062:intron | 55.0% | |
GGAGCTACAACACGCCTATG+AGG | + | chr8.3:15208922-15208941 | MS.gene033062:CDS | 55.0% | |
GGCGGATGAGTATGATGCGA+TGG | + | chr8.3:15209291-15209310 | MS.gene033062:intron | 55.0% | |
GGGCTTGTGTGTTGAAGCAC+TGG | - | chr8.3:15210163-15210182 | None:intergenic | 55.0% | |
GGGGTTGAGCCGAATGATGA+TGG | + | chr8.3:15209907-15209926 | MS.gene033062:intron | 55.0% | |
TAGCTCCTGAAACTGAGCGG+TGG | - | chr8.3:15208909-15208928 | None:intergenic | 55.0% | |
TAGGAAGTCGCGGAGGTTGA+TGG | + | chr8.3:15209324-15209343 | MS.gene033062:intron | 55.0% | |
TCTACCTCGCGAATGCTCAC+CGG | + | chr8.3:15208799-15208818 | MS.gene033062:CDS | 55.0% | |
TGAGGAGCCTGATTGGGCTA+AGG | + | chr8.3:15209552-15209571 | MS.gene033062:intron | 55.0% | |
TGCTTCAACACACAAGCCCG+AGG | + | chr8.3:15210164-15210183 | MS.gene033062:CDS | 55.0% | |
TGGAGATGGAGAGGAAGGAG+AGG | + | chr8.3:15209518-15209537 | MS.gene033062:intron | 55.0% | |
! | GGGGTTTTCGGATTCCGGTA+AGG | + | chr8.3:15209075-15209094 | MS.gene033062:CDS | 55.0% |
AGGTGAGGAGGAAGGCGAAG+AGG | + | chr8.3:15209362-15209381 | MS.gene033062:intron | 60.0% | |
CGAAGCCACCGCTCAGTTTC+AGG | + | chr8.3:15208901-15208920 | MS.gene033062:CDS | 60.0% | |
CGGTGGCTTCGGATTGAGAG+AGG | - | chr8.3:15208892-15208911 | None:intergenic | 60.0% | |
GGAGAGGAAGGAGAGGGCTA+TGG | + | chr8.3:15209525-15209544 | MS.gene033062:intron | 60.0% | |
GGTGAGGAGGAAGGCGAAGA+GGG | + | chr8.3:15209363-15209382 | MS.gene033062:intron | 60.0% | |
GTCCGAATAGGAAGTCGCGG+AGG | + | chr8.3:15209317-15209336 | MS.gene033062:intron | 60.0% | |
TCTTCCGGTGAGCATTCGCG+AGG | - | chr8.3:15208806-15208825 | None:intergenic | 60.0% | |
TGGTATCTGGGCACAAGGGC+CGG | + | chr8.3:15210040-15210059 | MS.gene033062:intron | 60.0% | |
! | GGCGTTGGAGAGCGAGTTTC+CGG | - | chr8.3:15208844-15208863 | None:intergenic | 60.0% |
!! | GAAGTCGCGGAGGTTGATGG+AGG | + | chr8.3:15209327-15209346 | MS.gene033062:intron | 60.0% |
CGAGCTTGTCAGGGTGGCGT+TGG | - | chr8.3:15208859-15208878 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 15208758 | 15211090 | 15208758 | ID=MS.gene033062 |
chr8.3 | mRNA | 15208758 | 15211090 | 15208758 | ID=MS.gene033062.t1;Parent=MS.gene033062 |
chr8.3 | exon | 15208758 | 15209234 | 15208758 | ID=MS.gene033062.t1.exon1;Parent=MS.gene033062.t1 |
chr8.3 | CDS | 15208758 | 15209234 | 15208758 | ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1 |
chr8.3 | exon | 15210057 | 15210560 | 15210057 | ID=MS.gene033062.t1.exon2;Parent=MS.gene033062.t1 |
chr8.3 | CDS | 15210057 | 15210560 | 15210057 | ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1 |
chr8.3 | exon | 15211085 | 15211090 | 15211085 | ID=MS.gene033062.t1.exon3;Parent=MS.gene033062.t1 |
chr8.3 | CDS | 15211085 | 15211090 | 15211085 | ID=cds.MS.gene033062.t1;Parent=MS.gene033062.t1 |
Gene Sequence |
Protein sequence |