AlfalfaGEDB | MS.gene033098

M. sativa cultivar XinJiangDaYe / MS.gene033098

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033098.t1	XP_013457938.1	97	677	20	0	1	677	1	677	0.00E+00	1314.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033098.t1	F4ICB6	63.6	709	224	8	1	676	1	708	5.0e-250	865.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033098.t1	A0A072UQ75	97.0	677	20	0	1	677	1	677	0.0e+00	1314.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene014350	MS.gene033098	PPI
MS.gene033098	MS.gene69330	PPI
MS.gene064832	MS.gene033098	PPI
MS.gene52774	MS.gene033098	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene033098.t1	MTR_4g109090	97.046	677	20	0	1	677	1	677	1363
MS.gene033098.t1	MTR_4g109090	96.408	529	19	0	149	677	1	529	1062
MS.gene033098.t1	MTR_7g011800	53.537	622	249	13	60	661	76	677	609
MS.gene033098.t1	MTR_2g085200	50.080	627	265	13	66	673	95	692	594
MS.gene033098.t1	MTR_6g013030	60.714	476	175	4	65	531	70	542	590
MS.gene033098.t1	MTR_2g020210	54.478	536	211	10	1	519	1	520	563
MS.gene033098.t1	MTR_7g114300	56.364	495	200	8	65	549	67	555	563
MS.gene033098.t1	MTR_7g114300	64.109	404	137	4	65	465	67	465	562
MS.gene033098.t1	MTR_4g118780	61.827	427	161	2	1	426	1	426	553
MS.gene033098.t1	MTR_3g098760	71.221	344	99	0	81	424	73	416	548

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene033098.t1	AT1G18670	63.380	710	224	7	1	676	1	708	887
MS.gene033098.t1	AT1G18670	63.366	707	223	7	1	673	1	705	883
MS.gene033098.t1	AT1G74330	63.143	700	223	11	1	676	1	689	853
MS.gene033098.t1	AT1G74330	63.165	695	221	11	1	671	1	684	849
MS.gene033098.t1	AT1G18670	63.775	657	202	7	1	623	1	655	818
MS.gene033098.t1	AT1G74330	63.538	650	204	9	1	626	1	641	796
MS.gene033098.t1	AT5G39420	48.571	665	272	12	16	671	36	639	597
MS.gene033098.t1	AT1G53050	48.784	617	261	11	68	673	97	669	581
MS.gene033098.t1	AT1G53050	48.784	617	261	11	68	673	97	669	581
MS.gene033098.t1	AT3G01085	54.251	494	186	6	62	541	72	539	555

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Find 157 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCAAGAAAGCCAGT+AGG	0.671872	8.2:-17003887	MS.gene033098:CDS
AAAGAAGAGAACACTAACAT+TGG	0.591511	8.2:-17003645	MS.gene033098:CDS
AAAGATAGTGGCATTAAAGA+AGG	0.560908	8.2:-17005662	MS.gene033098:CDS
AAAGTCAAGTGGATTTGCAT+GGG	0.535391	8.2:-17003520	MS.gene033098:CDS
AACAAGTTTACACTGGTTGC+AGG	0.382743	8.2:+17004533	None:intergenic
AACACGAGGAGGAGACAAAA+AGG	0.399572	8.2:-17004111	MS.gene033098:intron
AACAGATTATGGTCCGTCTG+TGG	0.613408	8.2:-17005085	MS.gene033098:CDS
AACCCAACCGTGAATAGCTT+CGG	0.486730	8.2:+17006021	None:intergenic
AACTTGTAATGGTCCATGAA+AGG	0.547965	8.2:+17003545	None:intergenic
AAGAAGAATACTGAGTCATT+TGG	0.391509	8.2:-17006193	MS.gene033098:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACAAGTAACAATGTC+TGG	+	chr8.2:17004687-17004706	None:intergenic	30.0%
AAAGAAGAGAACACTAACAT+TGG	-	chr8.2:17005020-17005039	MS.gene033098:CDS	30.0%
AACATGGTCAATCAATTTCT+TGG	-	chr8.2:17005663-17005682	MS.gene033098:CDS	30.0%
AAGAAGAATACTGAGTCATT+TGG	-	chr8.2:17002472-17002491	MS.gene033098:intron	30.0%
AAGTTGAAATCAAAACACGA+GGG	-	chr8.2:17005716-17005735	MS.gene033098:CDS	30.0%
AATAAACTTTACCGAATCAC+AGG	-	chr8.2:17003213-17003232	MS.gene033098:CDS	30.0%
AATCTTCTGGTGAATAATGA+AGG	-	chr8.2:17003440-17003459	MS.gene033098:CDS	30.0%
AGCACAAACAGAATAAAATG+TGG	+	chr8.2:17005587-17005606	None:intergenic	30.0%
AGCTAAAAATACCTGTGATT+CGG	+	chr8.2:17003227-17003246	None:intergenic	30.0%
AGTTCAAACTTCACAAAACA+TGG	-	chr8.2:17004974-17004993	MS.gene033098:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	17002373	17006314	17002373	ID=MS.gene033098
chr8.2	mRNA	17002373	17006314	17002373	ID=MS.gene033098.t1;Parent=MS.gene033098
chr8.2	exon	17005985	17006314	17005985	ID=MS.gene033098.t1.exon1;Parent=MS.gene033098.t1
chr8.2	CDS	17005985	17006314	17005985	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17005453	17005737	17005453	ID=MS.gene033098.t1.exon2;Parent=MS.gene033098.t1
chr8.2	CDS	17005453	17005737	17005453	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17005014	17005331	17005014	ID=MS.gene033098.t1.exon3;Parent=MS.gene033098.t1
chr8.2	CDS	17005014	17005331	17005014	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17004469	17004696	17004469	ID=MS.gene033098.t1.exon4;Parent=MS.gene033098.t1
chr8.2	CDS	17004469	17004696	17004469	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17004112	17004209	17004112	ID=MS.gene033098.t1.exon5;Parent=MS.gene033098.t1
chr8.2	CDS	17004112	17004209	17004112	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17003862	17003949	17003862	ID=MS.gene033098.t1.exon6;Parent=MS.gene033098.t1
chr8.2	CDS	17003862	17003949	17003862	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17003194	17003727	17003194	ID=MS.gene033098.t1.exon7;Parent=MS.gene033098.t1
chr8.2	CDS	17003194	17003727	17003194	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17002591	17002723	17002591	ID=MS.gene033098.t1.exon8;Parent=MS.gene033098.t1
chr8.2	CDS	17002591	17002723	17002591	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1
chr8.2	exon	17002373	17002392	17002373	ID=MS.gene033098.t1.exon9;Parent=MS.gene033098.t1
chr8.2	CDS	17002373	17002392	17002373	ID=cds.MS.gene033098.t1;Parent=MS.gene033098.t1

Gene Sequence

>MS.gene033098

ATGGGTTGTGTGTTTGTGAAGCAAGGTGTGTCTGTGACACCTGCCGTTGACCATTCAGTTGACTTAGAGAGGAATAATAGTGTAAAGAAGAAGAATAAGAAGAAGAATACTGAGTCATTTGGAGTGAGTTGGAGTGAGGTAGGTGACTCAGGAAGAACAAGTTTGAATGGTGAAGGTGGGTCATTGAGTTTCAGGTTAGGGAATCTCAGTAAGTATGTGGAGGGAGAACAGGCCGCGGCTGGTTGGCCGGTTTGGCTTAGCGCGGTTGCTTCCGAAGCTATTCACGGTTGGGTTCCTCTCCGTTCTGATGCATTTGAAAAACTTGACAAGGTTTGTTTCTTGTAAATCTCATGTTAGAACATTCTCAATCTTGTTGAAGTGATGTAAATGTATGTGTTTAATTTGTTTATATGGATTATGGTATGTTTGCTTTTCTGAGTGTTATCTATAATAAACTGCACAACTGAACACAGCAAATTGTAAATTAACGTAGTAGATTCTTTCGATGAATTCTCAATACTAGGATTTTGACAATTGATGTTTATTAATTTTTTGAATTTGGGAACTGCATGAATAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCGAAGGAGATTGAGACGGGAAAGATAGTGGCATTAAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCAAGAGAAATTATGATTCTTAGAAGGCTTGATCATCCAAATATCATTAAACTGGAAGGATTGATCACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTCACAGGGCTCTTGTCTAAACCAGAAATAAACTTTACCGAATCACAGGTATTTTTAGCTTAGGTTAGCTTAATTTTCCCTTAAGAATGTTAGCAACAATAATTTAAAATATTGGTGGTGAATTGTGACGAAAGGTTGATTAAAAGGACAAAGTAATTTTGTTGTGCAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCATTCAAGGGGTGTAATGCACCGCGACATCAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCAAATTTCTGTAATTCTGGGAAGAAGCAACCACTCACTAGTCGTGTTGTCACCTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCGTCTGTGGATCTTTGGAGTGTTGGTTGTGTATTTGCAGAGCTACTAGTTGGGAAGCCTATACTTAAGGGAAGAACTGAGGTAGTAATACCAATCTTTTCAAAATGTATGAACTTTTCTCCTTCCCCGTTTGATTTCTTGTGTTGCAGATTCCCCTCTAATGATAGTATTAGTTAGTGTAATTTTGTTAAAAATTTCATTGTATTTTTCTGTTGTAGAGTAGAAATGTTGGTCCAAACCTATTGCTTGAGGCTTTGTGGCAATCCTGTTAGTCTATTTGACATTGATGCAATCATTACAAGTTCAGTTGTTTATGATATTGATATATCGACAATTCCAATATTTAGTTTTAACTGTTCTTTTGAATTTCTTCTAAATCATCTTTGTTATGCATACAGGTTGAACAATTGCATAAAATCTTCAAGCTTTGCGGCTCTCCACCCGATGAATACTGGAAAAAGACCAGACTGCCTCACGCAACTTTGTTCAAGCCGCAGCAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTCCTGCAACCAGTGTAAACTTGTTACAAAATCTTCTTTCTATTGAACCAAACAAACGTGGAACCGCTTCATCTGCTCTCTCATTGGAGGTAGCTTTACTTAGCAGAGTTGTATTTGTGTTTGTTAGCATTCTATCTTCGGTGAATAATCTCTATTGTTGAACATAGTCTATTTTCATCGGCTTTGTCCATTTTAATTTGATTATTCTTCTTGGAACTTTGTTTCTCAATCAATATAAGTTTTTTCCCCTGTTATTAATCATAAACTCTATTTGAAGATGGATGCATACATGGTTTTGGACTCTTCTACTTTTCTAATACTACAATTTTGTATTCTCACCGCTTTCAGTATTTCAAAACAAAACCTTATGCATGTGAGCCATCAAGCTTACCAGTATACCCACCTAGCAAAGAGATCGATGCGAAACACGAGGAGGAGACAAAAAGGTAAACATCAATTTCACTGTCTATTTTATTGGCTAATAGTATAGTTTTTTATTGTCACATACCAACTGTTCTCTAGCATTGGATGATCTCTTTTATGGTATGGTCAAACCAGACATTGTTACTTGTCTTTTCTTTAAATCCTATATGGTGATGAACTTTCAGGAAAAAGATTGCCGGACGAGTTTGTGGACCCGAAAAAAGAAAAACATCAAGAAAGCCAGTAGGACTGAGTAAATTACCTCTAGCAGAGGTCTCTTTTGCTTTCTTTCATCTTGCATCATAGTGTTTTTGACCTTGCGTGGCACGCACATTGTTTTGCAGCAATGGTCTAATTGCCAAAGTTTAACTGTCACCTAAAATCTTACTCTTACTCTTCTATTCCAGGATTTGACAAGTCAAGTTCAAACTTCACAAAACATGGATGATAGATCTGTCCACATCCTTAAAGAAGAGAACACTAACATTGGTGAAATGGCACCAAAGCCACCTACTGGTAAACCAGAAGATGCTTCCCATATAAAGGATGCATCTCAAGTAGATATTCCCTTTCATGGACCATTACAAGTTTCAAAGTCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACGCTACTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAGTTCATTAGAACCTTCTACACTAAATTCAAATAACATTTCTGATAATAGAAACAATGAAAATAAGGAAGTTTTGGGGGGACGCACCAGTTCCAGAGGTCATGATCTATTTGAAATTTCTAAGCTAGTGATGCAAAATCAATGGAGTAAATTTGATCGTCCAGATTCCTTTGATACTTCTGAAGAGTACCACTCACAAGAACTGTCTATGATGCTTTATCATAGAGAAGATTCAATGTCCAAGAGAAGTAACCGGGTAAGTTTGTGAATTTGCCAGATTCAATGATGTGTATCTAATACTGTATTTGATATTTTCTGATGAGGGATGCAATTTATATCCCTCCAGCCACATTTTATTCTGTTTGTGCTTCAATATATATAAAGATTGATATGAGGTGCTATTTAGTTACTGCACCTGACTTGTAAACATGGTCAATCAATTTCTTGGATCATAAGCCAAACGGAATCGGATCCTCTCAAGTTGAAATCAAAACACGAGGGGGTTATGTCGGATTGTCGGTGATCTCACAATTAAAATTTATTGAATTCTATAACTCAAAAATATTAGTAGGATCTAATGAATTTTAATGGTGAGATCACCAGCATAACTACCTAATTTTGGAAAGGATTCCAACTTGATAGAATCAAAATCCAAGCCAAAACTAGGTAACTCAATAATATGCATCCTTGTCAAGACATGATTCTTATTTGTTTCCCTCCTTACAGAGTTATCAGGATCAAGGAGAGAAGGTTGATTTTTCAGGGCCAATAATATCACAAATGCATACAGTTGACGAGCTCTTAGAAAGACATGAGCGCCACATTCGACATACAGTCCGAAGATCATGGTTTCAGAGAGGTATGTGACAGTAATACCAAGAAGATTGTTGCCCTAAGAACAAAAACATGTTTCTATTTTTTGTGTGTCTTTGAACTAGATTTCTTGAAATAATCTTATAAATAGATTAATAATAGAAAGTTACCATGCTACTCCAAAGCTAATCATTTGTGAAATGAGAATGCTTATAATTAACATTGCATTTTTAATGGATTGCAGGTAAGAAGCATGGGAATTAA

Protein sequence

>MS.gene033098.t1

MGCVFVKQGVSVTPAVDHSVDLERNNSVKKKNKKKNTESFGVSWSEVGDSGRTSLNGEGGSLSFRLGNLSKYVEGEQAAAGWPVWLSAVASEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGKKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFPATSVNLLQNLLSIEPNKRGTASSALSLEYFKTKPYACEPSSLPVYPPSKEIDAKHEEETKRKKIAGRVCGPEKRKTSRKPVGLSKLPLAEDLTSQVQTSQNMDDRSVHILKEENTNIGEMAPKPPTGKPEDASHIKDASQVDIPFHGPLQVSKSSGFAWAKRRKDDATSIRSHTRSISKGHIFSSLEPSTLNSNNISDNRNNENKEVLGGRTSSRGHDLFEISKLVMQNQWSKFDRPDSFDTSEEYHSQELSMMLYHREDSMSKRSNRSYQDQGEKVDFSGPIISQMHTVDELLERHERHIRHTVRRSWFQRGKKHGN