AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033240.t1 MTR_4g106900 95.982 672 27 0 1 672 1 672 0.0 1314
MS.gene033240.t1 MTR_3g077950 61.609 758 197 9 1 668 1 754 0.0 874
MS.gene033240.t1 MTR_3g077950 61.162 757 202 9 1 668 29 782 0.0 863
MS.gene033240.t1 MTR_6g007110 56.628 694 271 8 1 670 1 688 0.0 733
MS.gene033240.t1 MTR_8g099745 62.772 505 187 1 167 670 65 569 0.0 669
MS.gene033240.t1 MTR_6g007110 55.433 635 254 7 1 612 1 629 0.0 658
MS.gene033240.t1 MTR_8g027385 61.310 504 193 1 167 670 52 553 0.0 645
MS.gene033240.t1 MTR_1g070145 26.069 491 351 5 167 652 91 574 1.25e-42 163
MS.gene033240.t1 MTR_2g023050 68.132 91 28 1 581 670 3 93 2.12e-33 125
MS.gene033240.t1 MTR_6g006830 57.143 49 21 0 404 452 19 67 1.52e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033240.t1 AT1G27500 57.210 638 245 6 42 668 20 640 0.0 718
MS.gene033240.t1 AT1G27500 57.210 638 245 6 42 668 31 651 0.0 718
MS.gene033240.t1 AT3G27960 54.893 654 262 10 30 670 19 652 0.0 689
MS.gene033240.t1 AT3G27960 54.893 654 262 10 30 670 19 652 0.0 689
MS.gene033240.t1 AT4G10840 55.726 585 234 5 104 670 12 589 0.0 651
MS.gene033240.t1 AT3G27960 54.530 596 238 10 30 612 19 594 0.0 624
MS.gene033240.t1 AT4G10840 55.408 527 210 5 104 612 12 531 0.0 586
MS.gene033240.t1 AT2G31240 26.877 506 357 6 161 659 103 602 3.46e-42 162

Find 134 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATACCCCAAGAGTTTC+AGG 0.177813 8.4:-20688334 None:intergenic
TCAATTATGTGTTACAATAA+TGG 0.193081 8.4:+20687398 MS.gene033240:CDS
CCCTTAGCTCTTGATATTGA+TGG 0.198930 8.4:-20686879 None:intergenic
TCATTTGTTCTCCACTAATA+TGG 0.215795 8.4:-20686791 None:intergenic
TCGATCGATCGCTCTAAAAT+TGG 0.218648 8.4:-20687275 None:intergenic
CAGACGCCACTTCCACTTCT+TGG 0.232398 8.4:-20687697 None:intergenic
CTTGATATTCATAGAGAAAA+TGG 0.235706 8.4:+20687548 MS.gene033240:CDS
GGACGATGCAATTGATATTA+TGG 0.270150 8.4:+20688753 MS.gene033240:CDS
CAATTATGTGTTACAATAAT+GGG 0.276825 8.4:+20687399 MS.gene033240:CDS
CTTCCAATAGAAGCATTCTT+AGG 0.278099 8.4:-20686996 None:intergenic
TGAAGAAGCAAAGATTGTTT+TGG 0.282341 8.4:+20688288 MS.gene033240:CDS
GGAAGTACAAAGAAAGGTTT+TGG 0.283596 8.4:+20687424 MS.gene033240:CDS
ATTTCGCAATTGCCTGTTGC+TGG 0.305472 8.4:-20687319 None:intergenic
TGTGGGCTCAATGGTATTCT+TGG 0.312525 8.4:-20686645 None:intergenic
TGCAGCAATATATTGCAGTT+TGG 0.316706 8.4:+20687232 MS.gene033240:CDS
AAGTCGAGTCGACGATTCTA+AGG 0.334895 8.4:+20687031 MS.gene033240:CDS
TGCAAATGGGAAACCGAGTT+TGG 0.341154 8.4:+20687184 MS.gene033240:CDS
TTTATTATATATGTTCTTAG+AGG 0.341743 8.4:-20686613 None:intergenic
GCAAGGGATTTGATTTCATT+AGG 0.353869 8.4:+20687101 MS.gene033240:CDS
AAACCTAAGAATGCTTCTAT+TGG 0.361701 8.4:+20686993 MS.gene033240:CDS
GCAGCAATATATTGCAGTTT+GGG 0.364615 8.4:+20687233 MS.gene033240:CDS
TCAGAATTTAGCCATATTAG+TGG 0.370582 8.4:+20686780 MS.gene033240:CDS
GCAATTGTGTTCTGTTGGCC+AGG 0.374516 8.4:-20688070 None:intergenic
GAAGTATTGTTGAAGGAAAC+AGG 0.377018 8.4:+20688850 MS.gene033240:CDS
TTTCCATTCTTCCTTTCAAC+AGG 0.377860 8.4:-20686924 None:intergenic
TGCAGGAATTGAAGCTCAAA+TGG 0.381007 8.4:+20688090 MS.gene033240:CDS
TGGATCGGTCTTTGTACGTT+TGG 0.386436 8.4:+20687838 MS.gene033240:CDS
CTTATCACCCTGAAACTCTT+GGG 0.395524 8.4:+20688326 MS.gene033240:CDS
CGTCGTATCGAGCCAATGAT+AGG 0.402619 8.4:-20687745 None:intergenic
GGAGATAGTGAAAGAGGAAA+TGG 0.406354 8.4:+20686821 MS.gene033240:CDS
CAAGAGTTGGTGAAACTTGT+AGG 0.412109 8.4:+20687459 MS.gene033240:CDS
CCTTATCACCCTGAAACTCT+TGG 0.414921 8.4:+20688325 MS.gene033240:CDS
ATCTCTTCTGAAGGAACGCC+AGG 0.416447 8.4:-20687944 None:intergenic
TGGAGACACATTCCTATCAT+TGG 0.416505 8.4:+20687733 MS.gene033240:CDS
CCAGGTATTGTTCCAATTGA+AGG 0.416547 8.4:+20686558 MS.gene033240:CDS
CCTTCAATTGGAACAATACC+TGG 0.419676 8.4:-20686558 None:intergenic
TTGTTTGAGAATTCTGCAAA+TGG 0.422693 8.4:+20687170 MS.gene033240:CDS
GGCCAACAGAACACAATTGC+AGG 0.427612 8.4:+20688073 MS.gene033240:CDS
GGTCTTATATGTGAAACTAA+TGG 0.429270 8.4:+20687614 MS.gene033240:CDS
TGCTGGCCTTCCTCAACAAC+AGG 0.431904 8.4:-20687302 None:intergenic
TTGAAGAGGCAGCGGATAGA+AGG 0.431980 8.4:+20687585 MS.gene033240:CDS
CTACAAGTTTCACCAACTCT+TGG 0.433233 8.4:-20687458 None:intergenic
ATAATAGAACATGGAAGGTA+AGG 0.438944 8.4:+20687870 MS.gene033240:CDS
CCTCCTGTTGAAAGGAAGAA+TGG 0.443940 8.4:+20686921 MS.gene033240:CDS
GCTTTGGATCTGATAGTGAT+TGG 0.453900 8.4:+20686745 MS.gene033240:CDS
TGGGAAACCGAGTTTGGATC+TGG 0.455266 8.4:+20687190 MS.gene033240:CDS
GCAGGAATTGAAGCTCAAAT+GGG 0.456824 8.4:+20688091 MS.gene033240:CDS
GGGGTATATAGCAATCTTGC+TGG 0.456842 8.4:+20688346 MS.gene033240:CDS
GTCTCAAAGCTTCGAGCTAC+GGG 0.458234 8.4:+20688172 MS.gene033240:CDS
TTAGGTGTTTGTGGGCTCAA+TGG 0.458935 8.4:-20686654 None:intergenic
TTCTGAAGGAACGCCAGGCA+TGG 0.459865 8.4:-20687939 None:intergenic
TGAAGGAAACAGGCAGAGTT+CGG 0.462163 8.4:+20688860 MS.gene033240:CDS
ACACGCTCAAGTCAAAGCTT+TGG 0.469749 8.4:+20686729 MS.gene033240:CDS
CCAAGAGTTTCAGGGTGATA+AGG 0.470788 8.4:-20688325 None:intergenic
GAAGATGGAGATAGTGAAAG+AGG 0.472563 8.4:+20686815 MS.gene033240:CDS
TGGAGAACAAATGAGGAAGA+TGG 0.477057 8.4:+20686800 MS.gene033240:CDS
CCATTCTTCCTTTCAACAGG+AGG 0.477650 8.4:-20686921 None:intergenic
AAGCATTGTAAGATTCAGTC+TGG 0.479901 8.4:-20688138 None:intergenic
TGGGTTGGAAGTACAAAGAA+AGG 0.481648 8.4:+20687418 MS.gene033240:CDS
GGCAGCGGATAGAAGGTTGA+TGG 0.481673 8.4:+20687592 MS.gene033240:CDS
ACATTTGATAATCCTGAGCT+TGG 0.484852 8.4:+20687059 MS.gene033240:CDS
TGTTGAGGAAGGCCAGCAAC+AGG 0.489903 8.4:+20687307 MS.gene033240:CDS
ATCTATGAAAATCCCATGCC+TGG 0.491291 8.4:+20687926 MS.gene033240:CDS
TGTTGATGAGAAGAGAAGGT+TGG 0.493492 8.4:+20688828 MS.gene033240:CDS
GATTCTTCTTGATGTTAATG+AGG 0.494164 8.4:+20688906 MS.gene033240:CDS
AAGGTTGGAAGTATTGTTGA+AGG 0.494395 8.4:+20688843 MS.gene033240:CDS
TTCGCCAGTCACATGCAACT+TGG 0.495995 8.4:+20687341 MS.gene033240:CDS
ACCATCAATATCAAGAGCTA+AGG 0.498141 8.4:+20686878 MS.gene033240:CDS
GGGGTCATATACTATGTGTT+GGG 0.499466 8.4:+20688112 MS.gene033240:CDS
CAATTGTGTTCTGTTGGCCA+GGG 0.500673 8.4:-20688069 None:intergenic
TGTTTGAGAATTCTGCAAAT+GGG 0.502518 8.4:+20687171 MS.gene033240:CDS
GTCTCCAAGTTGCATGTGAC+TGG 0.503224 8.4:-20687345 None:intergenic
TCTGAAGGAACGCCAGGCAT+GGG 0.507549 8.4:-20687938 None:intergenic
TTCCTGCAATTGTGTTCTGT+TGG 0.509608 8.4:-20688075 None:intergenic
CAGTTTGGGTCATTATAATG+AGG 0.510429 8.4:+20687247 MS.gene033240:CDS
TGGAAATCATGAAGCAGCAT+TGG 0.513854 8.4:+20687634 MS.gene033240:CDS
GGAGTACATTGTAGTTGTGA+GGG 0.517613 8.4:+20688774 MS.gene033240:CDS
AGCATGGCAATGGTATCAAA+TGG 0.519611 8.4:+20687674 MS.gene033240:CDS
CGCTGCCTCTTCAAGAGAAG+AGG 0.524252 8.4:-20687576 None:intergenic
GCTGGCACATATGATGCAAT+TGG 0.526112 8.4:+20688364 MS.gene033240:CDS
TATATACCCCAAGAGTTTCA+GGG 0.526906 8.4:-20688333 None:intergenic
CTCTTCTCTTGAAGAGGCAG+CGG 0.529044 8.4:+20687577 MS.gene033240:CDS
TCGATACGACGAGGCCATCT+TGG 0.530389 8.4:+20687757 MS.gene033240:CDS
TGTCTCAAAGCTTCGAGCTA+CGG 0.531527 8.4:+20688171 MS.gene033240:CDS
GATCGAAATTCCTGTTGTTG+AGG 0.532523 8.4:+20687292 MS.gene033240:CDS
GCGTCTGTTGATTGCAGCAT+TGG 0.533117 8.4:+20687713 MS.gene033240:CDS
CAAAGGAGGGAATCATCCTT+CGG 0.536771 8.4:+20687814 MS.gene033240:CDS
CTTCAAAACCTCCTGTTGAA+AGG 0.539003 8.4:+20686913 MS.gene033240:CDS
ATATGTTCTTAGAGGGTGAA+GGG 0.542261 8.4:-20686605 None:intergenic
AAGAAGAATCTCAAGTGACT+TGG 0.543515 8.4:-20688893 None:intergenic
TTCACCCTCTTCTCTTGAAG+AGG 0.545965 8.4:+20687571 MS.gene033240:CDS
TAATAGAACATGGAAGGTAA+GGG 0.546637 8.4:+20687871 MS.gene033240:CDS
ATGCTTCTATTGGAAGATCA+AGG 0.547710 8.4:+20687003 MS.gene033240:CDS
GAATCATCCTTCGGTTGGAT+CGG 0.550035 8.4:+20687823 MS.gene033240:CDS
GGAGTAACTGATCCAAGAGT+TGG 0.552445 8.4:+20687446 MS.gene033240:CDS
TATATGTTCTTAGAGGGTGA+AGG 0.553039 8.4:-20686606 None:intergenic
GGAGGGAATCATCCTTCGGT+TGG 0.553087 8.4:+20687818 MS.gene033240:CDS
GGAGACACTTATGCTATGCT+AGG 0.554877 8.4:+20687362 MS.gene033240:CDS
CCATCAATATCAAGAGCTAA+GGG 0.557668 8.4:+20686879 MS.gene033240:CDS
CCTAGGAAATCAAAGATGCC+AGG 0.558189 8.4:+20686540 None:intergenic
TGGAGTACATTGTAGTTGTG+AGG 0.562184 8.4:+20688773 MS.gene033240:CDS
AAATGGCCAAGAAGTGGAAG+TGG 0.564594 8.4:+20687691 MS.gene033240:CDS
TTATTATATATGTTCTTAGA+GGG 0.565518 8.4:-20686612 None:intergenic
GCACATATGATGCAATTGGC+AGG 0.565574 8.4:+20688368 MS.gene033240:CDS
ACATAATTGAATTCTCAAGT+TGG 0.568682 8.4:-20687385 None:intergenic
TATGTGTTACAATAATGGGT+TGG 0.569715 8.4:+20687403 MS.gene033240:CDS
GAAATTCCTGTTGTTGAGGA+AGG 0.573452 8.4:+20687296 MS.gene033240:CDS
CTGAGTTGTATAATAGAACA+TGG 0.575405 8.4:+20687861 MS.gene033240:CDS
GGTATCAAATGGCCAAGAAG+TGG 0.579507 8.4:+20687685 MS.gene033240:CDS
TAATTTGACAGCCTCGCTCA+AGG 0.580135 8.4:-20688263 None:intergenic
CCACTAGCAATCTCTTCTGA+AGG 0.584600 8.4:-20687953 None:intergenic
CACATAACCAGATCCAAACT+CGG 0.593249 8.4:-20687197 None:intergenic
GATAACTCGAGAGCTTTCCT+CGG 0.595321 8.4:-20687131 None:intergenic
GTTGTATAATAGAACATGGA+AGG 0.597870 8.4:+20687865 MS.gene033240:CDS
GCAGCGGATAGAAGGTTGAT+GGG 0.602788 8.4:+20687593 MS.gene033240:CDS
GAGATACATAATGATGCCCC+TGG 0.603731 8.4:+20688052 MS.gene033240:CDS
GCTGCCTCTTCAAGAGAAGA+GGG 0.607015 8.4:-20687575 None:intergenic
ATGTTGTTGATGAGAAGAGA+AGG 0.609538 8.4:+20688824 MS.gene033240:CDS
TTTCATTAGGAGAGAATCCG+AGG 0.611050 8.4:+20687114 MS.gene033240:CDS
CAGGAATTGAAGCTCAAATG+GGG 0.612615 8.4:+20688092 MS.gene033240:CDS
GTACATTGTAGTTGTGAGGG+AGG 0.615028 8.4:+20688777 MS.gene033240:CDS
AAACACCTAAAAGTGTTGAG+AGG 0.620977 8.4:+20686667 MS.gene033240:CDS
CCTTCAGAAGAGATTGCTAG+TGG 0.623445 8.4:+20687953 MS.gene033240:CDS
TTATCACCCTGAAACTCTTG+GGG 0.630860 8.4:+20688327 MS.gene033240:CDS
TTGCCATGCTTGCTAAAACA+AGG 0.632268 8.4:-20687661 None:intergenic
CATTAAGTTGCACACAACAA+AGG 0.635240 8.4:-20688240 None:intergenic
ATATTAGTGGAGAACAAATG+AGG 0.636511 8.4:+20686793 MS.gene033240:CDS
AATTGTGTTCTGTTGGCCAG+GGG 0.640099 8.4:-20688068 None:intergenic
TGCAATTTGACGAAGCAGAG+AGG 0.640239 8.4:+20687510 MS.gene033240:CDS
AGCACTCGAGTTACTGCACA+AGG 0.644367 8.4:+20688024 MS.gene033240:CDS
ACAAAGACCGATCCAACCGA+AGG 0.663368 8.4:-20687830 None:intergenic
GCAACTTAATGCCTTGAGCG+AGG 0.674178 8.4:+20688252 MS.gene033240:CDS
AGGAATTGAAGCTCAAATGG+GGG 0.710252 8.4:+20688093 MS.gene033240:CDS
ATCATTGGCTCGATACGACG+AGG 0.712130 8.4:+20687748 MS.gene033240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATATGTTCTTAGA+GGG - chr8.4:20686615-20686634 None:intergenic 15.0%
!! TTTATTATATATGTTCTTAG+AGG - chr8.4:20686616-20686635 None:intergenic 15.0%
!!! ATTTTTATTAAAGAAAGCAA+GGG + chr8.4:20687085-20687104 MS.gene033240:CDS 15.0%
!! CAATTATGTGTTACAATAAT+GGG + chr8.4:20687399-20687418 MS.gene033240:CDS 20.0%
!! CTTGCTTTCTTTAATAAAAA+TGG - chr8.4:20687086-20687105 None:intergenic 20.0%
!! TCAATTATGTGTTACAATAA+TGG + chr8.4:20687398-20687417 MS.gene033240:CDS 20.0%
!!! ATACTAATTTTGAACATTAG+TGG - chr8.4:20688579-20688598 None:intergenic 20.0%
!!! CATTTTTATTAAAGAAAGCA+AGG + chr8.4:20687084-20687103 MS.gene033240:CDS 20.0%
!!! TTCATTTTATTTCCTTCAAT+TGG - chr8.4:20686573-20686592 None:intergenic 20.0%
! ACATAATTGAATTCTCAAGT+TGG - chr8.4:20687388-20687407 None:intergenic 25.0%
! ACTAGATCTAATAATCAAGT+AGG + chr8.4:20688552-20688571 MS.gene033240:intron 25.0%
! CTAGATCTAATAATCAAGTA+GGG + chr8.4:20688553-20688572 MS.gene033240:intron 25.0%
! CTTGATATTCATAGAGAAAA+TGG + chr8.4:20687548-20687567 MS.gene033240:CDS 25.0%
!!! GGTTTTGTTCTTAATCAAAT+GGG + chr8.4:20688217-20688236 MS.gene033240:CDS 25.0%
!!! TGGTTTTGTTCTTAATCAAA+TGG + chr8.4:20688216-20688235 MS.gene033240:CDS 25.0%
AAACCTAAGAATGCTTCTAT+TGG + chr8.4:20686993-20687012 MS.gene033240:CDS 30.0%
AAACTACATACCATATACTG+TGG - chr8.4:20688628-20688647 None:intergenic 30.0%
AAATGGTGAAAAAGATACTG+AGG + chr8.4:20686838-20686857 MS.gene033240:CDS 30.0%
AACTACATACCATATACTGT+GGG - chr8.4:20688627-20688646 None:intergenic 30.0%
AATGCCTCAATATCATGAAA+GGG - chr8.4:20688487-20688506 None:intergenic 30.0%
AATGGTGAAAAAGATACTGA+GGG + chr8.4:20686839-20686858 MS.gene033240:CDS 30.0%
ATAATAGAACATGGAAGGTA+AGG + chr8.4:20687870-20687889 MS.gene033240:CDS 30.0%
ATATTAGTGGAGAACAAATG+AGG + chr8.4:20686793-20686812 MS.gene033240:CDS 30.0%
CTGAGTTGTATAATAGAACA+TGG + chr8.4:20687861-20687880 MS.gene033240:CDS 30.0%
GATTCTTCTTGATGTTAATG+AGG + chr8.4:20688906-20688925 MS.gene033240:CDS 30.0%
GTTGTATAATAGAACATGGA+AGG + chr8.4:20687865-20687884 MS.gene033240:CDS 30.0%
TAATACTTGCAAACAAACGT+GGG - chr8.4:20688441-20688460 None:intergenic 30.0%
TAATAGAACATGGAAGGTAA+GGG + chr8.4:20687871-20687890 MS.gene033240:CDS 30.0%
TAATGCCTCAATATCATGAA+AGG - chr8.4:20688488-20688507 None:intergenic 30.0%
TCAGAATTTAGCCATATTAG+TGG + chr8.4:20686780-20686799 MS.gene033240:CDS 30.0%
TCATTTGTTCTCCACTAATA+TGG - chr8.4:20686794-20686813 None:intergenic 30.0%
TGTTTGAGAATTCTGCAAAT+GGG + chr8.4:20687171-20687190 MS.gene033240:CDS 30.0%
TTGTTTGAGAATTCTGCAAA+TGG + chr8.4:20687170-20687189 MS.gene033240:CDS 30.0%
! GAAGTACAAAGAAAGGTTTT+GGG + chr8.4:20687425-20687444 MS.gene033240:CDS 30.0%
! GGTCTTATATGTGAAACTAA+TGG + chr8.4:20687614-20687633 MS.gene033240:CDS 30.0%
! TGAAGAAGCAAAGATTGTTT+TGG + chr8.4:20688288-20688307 MS.gene033240:CDS 30.0%
!! CAAATAACTATAGCTTGCTT+TGG - chr8.4:20688512-20688531 None:intergenic 30.0%
!! GTACTATGATATGCTATTTC+AGG + chr8.4:20688728-20688747 MS.gene033240:intron 30.0%
!! TATGATATGCTATTTCAGGA+TGG + chr8.4:20688732-20688751 MS.gene033240:intron 30.0%
!! TATGTGTTACAATAATGGGT+TGG + chr8.4:20687403-20687422 MS.gene033240:CDS 30.0%
!!! ATTGTTTTGGAACAAGAGTA+CGG + chr8.4:20688301-20688320 MS.gene033240:CDS 30.0%
!!! GCGGTTTTTGAGATTTATAT+AGG + chr8.4:20688656-20688675 MS.gene033240:intron 30.0%
!!! GTTGTACTTTGTTTTCTCAA+AGG - chr8.4:20686954-20686973 None:intergenic 30.0%
AAGAAGAATCTCAAGTGACT+TGG - chr8.4:20688896-20688915 None:intergenic 35.0%
AATAAAAATGGTCCAAGCTC+AGG - chr8.4:20687074-20687093 None:intergenic 35.0%
ACCATCAATATCAAGAGCTA+AGG + chr8.4:20686878-20686897 MS.gene033240:CDS 35.0%
ATAAACCAACCCACAGTATA+TGG + chr8.4:20688615-20688634 MS.gene033240:intron 35.0%
ATATGTTCTTAGAGGGTGAA+GGG - chr8.4:20686608-20686627 None:intergenic 35.0%
ATGCCTCAATATCATGAAAG+GGG - chr8.4:20688486-20688505 None:intergenic 35.0%
ATGCTTCTATTGGAAGATCA+AGG + chr8.4:20687003-20687022 MS.gene033240:CDS 35.0%
CAGTTTGGGTCATTATAATG+AGG + chr8.4:20687247-20687266 MS.gene033240:CDS 35.0%
CCATCAATATCAAGAGCTAA+GGG + chr8.4:20686879-20686898 MS.gene033240:CDS 35.0%
GCAGCAATATATTGCAGTTT+GGG + chr8.4:20687233-20687252 MS.gene033240:CDS 35.0%
GGACGATGCAATTGATATTA+TGG + chr8.4:20688753-20688772 MS.gene033240:CDS 35.0%
GTAATACTTGCAAACAAACG+TGG - chr8.4:20688442-20688461 None:intergenic 35.0%
TATATACCCCAAGAGTTTCA+GGG - chr8.4:20688336-20688355 None:intergenic 35.0%
TATATGTTCTTAGAGGGTGA+AGG - chr8.4:20686609-20686628 None:intergenic 35.0%
TGCAGCAATATATTGCAGTT+TGG + chr8.4:20687232-20687251 MS.gene033240:CDS 35.0%
TTTCCATTCTTCCTTTCAAC+AGG - chr8.4:20686927-20686946 None:intergenic 35.0%
! AAGCATTGTAAGATTCAGTC+TGG - chr8.4:20688141-20688160 None:intergenic 35.0%
! ACATTTGATAATCCTGAGCT+TGG + chr8.4:20687059-20687078 MS.gene033240:CDS 35.0%
! ATGTTGTTGATGAGAAGAGA+AGG + chr8.4:20688824-20688843 MS.gene033240:CDS 35.0%
! CATTAAGTTGCACACAACAA+AGG - chr8.4:20688243-20688262 None:intergenic 35.0%
! GAGAAAAAATCGGCTTTCTT+TGG + chr8.4:20688196-20688215 MS.gene033240:CDS 35.0%
! GCAAGGGATTTGATTTCATT+AGG + chr8.4:20687101-20687120 MS.gene033240:CDS 35.0%
! TGAAACCTCTCAACACTTTT+AGG - chr8.4:20686675-20686694 None:intergenic 35.0%
!! AAACACCTAAAAGTGTTGAG+AGG + chr8.4:20686667-20686686 MS.gene033240:CDS 35.0%
!! AAGGTTGGAAGTATTGTTGA+AGG + chr8.4:20688843-20688862 MS.gene033240:CDS 35.0%
!! CAACACTTTTAGGTGTTTGT+GGG - chr8.4:20686665-20686684 None:intergenic 35.0%
!! CTTCCAATAGAAGCATTCTT+AGG - chr8.4:20686999-20687018 None:intergenic 35.0%
!! GAAGTATTGTTGAAGGAAAC+AGG + chr8.4:20688850-20688869 MS.gene033240:CDS 35.0%
!! GGAAGTACAAAGAAAGGTTT+TGG + chr8.4:20687424-20687443 MS.gene033240:CDS 35.0%
!! TCAACACTTTTAGGTGTTTG+TGG - chr8.4:20686666-20686685 None:intergenic 35.0%
!! TTTTCAAGACTCACAAAGGA+GGG + chr8.4:20687801-20687820 MS.gene033240:CDS 35.0%
ACATACCATATACTGTGGGT+TGG - chr8.4:20688623-20688642 None:intergenic 40.0%
AGCATGGCAATGGTATCAAA+TGG + chr8.4:20687674-20687693 MS.gene033240:CDS 40.0%
AGCTACGGGAGAGAAAAAAT+CGG + chr8.4:20688186-20688205 MS.gene033240:CDS 40.0%
AGGAATTGAAGCTCAAATGG+GGG + chr8.4:20688093-20688112 MS.gene033240:CDS 40.0%
ATCTATGAAAATCCCATGCC+TGG + chr8.4:20687926-20687945 MS.gene033240:CDS 40.0%
CACATAACCAGATCCAAACT+CGG - chr8.4:20687200-20687219 None:intergenic 40.0%
CAGGAATTGAAGCTCAAATG+GGG + chr8.4:20688092-20688111 MS.gene033240:CDS 40.0%
CCTTCAATTGGAACAATACC+TGG - chr8.4:20686561-20686580 None:intergenic 40.0%
CTACAAGTTTCACCAACTCT+TGG - chr8.4:20687461-20687480 None:intergenic 40.0%
CTATATACCCCAAGAGTTTC+AGG - chr8.4:20688337-20688356 None:intergenic 40.0%
CTTATCACCCTGAAACTCTT+GGG + chr8.4:20688326-20688345 MS.gene033240:CDS 40.0%
CTTCAAAACCTCCTGTTGAA+AGG + chr8.4:20686913-20686932 MS.gene033240:CDS 40.0%
GAAATTCCTGTTGTTGAGGA+AGG + chr8.4:20687296-20687315 MS.gene033240:CDS 40.0%
GAAGATGGAGATAGTGAAAG+AGG + chr8.4:20686815-20686834 MS.gene033240:CDS 40.0%
GATCGAAATTCCTGTTGTTG+AGG + chr8.4:20687292-20687311 MS.gene033240:CDS 40.0%
GCAGGAATTGAAGCTCAAAT+GGG + chr8.4:20688091-20688110 MS.gene033240:CDS 40.0%
GGAGATAGTGAAAGAGGAAA+TGG + chr8.4:20686821-20686840 MS.gene033240:CDS 40.0%
GGAGTACATTGTAGTTGTGA+GGG + chr8.4:20688774-20688793 MS.gene033240:CDS 40.0%
GGGGTCATATACTATGTGTT+GGG + chr8.4:20688112-20688131 MS.gene033240:CDS 40.0%
GTATGTAGTTTCTTGCTTCG+CGG + chr8.4:20688637-20688656 MS.gene033240:intron 40.0%
TGCAGGAATTGAAGCTCAAA+TGG + chr8.4:20688090-20688109 MS.gene033240:CDS 40.0%
TGGAAATCATGAAGCAGCAT+TGG + chr8.4:20687634-20687653 MS.gene033240:CDS 40.0%
TGGAGAACAAATGAGGAAGA+TGG + chr8.4:20686800-20686819 MS.gene033240:CDS 40.0%
TGGAGACACATTCCTATCAT+TGG + chr8.4:20687733-20687752 MS.gene033240:CDS 40.0%
TGGAGTACATTGTAGTTGTG+AGG + chr8.4:20688773-20688792 MS.gene033240:CDS 40.0%
TTATCACCCTGAAACTCTTG+GGG + chr8.4:20688327-20688346 MS.gene033240:CDS 40.0%
TTCCTGCAATTGTGTTCTGT+TGG - chr8.4:20688078-20688097 None:intergenic 40.0%
TTGTGAGGGAGGAAAAACTT+GGG + chr8.4:20688788-20688807 MS.gene033240:CDS 40.0%
TTTCATTAGGAGAGAATCCG+AGG + chr8.4:20687114-20687133 MS.gene033240:CDS 40.0%
! CCAGGTATTGTTCCAATTGA+AGG + chr8.4:20686558-20686577 MS.gene033240:CDS 40.0%
! CCCTTAGCTCTTGATATTGA+TGG - chr8.4:20686882-20686901 None:intergenic 40.0%
! GCTTTGGATCTGATAGTGAT+TGG + chr8.4:20686745-20686764 MS.gene033240:CDS 40.0%
! TGGGTTGGAAGTACAAAGAA+AGG + chr8.4:20687418-20687437 MS.gene033240:CDS 40.0%
! TGTTGATGAGAAGAGAAGGT+TGG + chr8.4:20688828-20688847 MS.gene033240:CDS 40.0%
! TTGCCATGCTTGCTAAAACA+AGG - chr8.4:20687664-20687683 None:intergenic 40.0%
!! CAAGAGTTGGTGAAACTTGT+AGG + chr8.4:20687459-20687478 MS.gene033240:CDS 40.0%
!! CTTTCAACAGGAGGTTTTGA+AGG - chr8.4:20686915-20686934 None:intergenic 40.0%
!! GGCGTATAAAAAAGCGTTAG+CGG + chr8.4:20687778-20687797 MS.gene033240:CDS 40.0%
!! GTTTTCAAGACTCACAAAGG+AGG + chr8.4:20687800-20687819 MS.gene033240:CDS 40.0%
!! TCGATCGATCGCTCTAAAAT+TGG - chr8.4:20687278-20687297 None:intergenic 40.0%
!!! CGCTTTTTTATACGCCAAGA+TGG - chr8.4:20687774-20687793 None:intergenic 40.0%
!!! TGTTTTAGCAAGCATGGCAA+TGG + chr8.4:20687664-20687683 MS.gene033240:CDS 40.0%
AAATGGCCAAGAAGTGGAAG+TGG + chr8.4:20687691-20687710 MS.gene033240:CDS 45.0%
AAGTCGAGTCGACGATTCTA+AGG + chr8.4:20687031-20687050 MS.gene033240:CDS 45.0%
AATTGTGTTCTGTTGGCCAG+GGG - chr8.4:20688071-20688090 None:intergenic 45.0%
ACACGCTCAAGTCAAAGCTT+TGG + chr8.4:20686729-20686748 MS.gene033240:CDS 45.0%
ATTTCGCAATTGCCTGTTGC+TGG - chr8.4:20687322-20687341 None:intergenic 45.0%
CAAAGGAGGGAATCATCCTT+CGG + chr8.4:20687814-20687833 MS.gene033240:CDS 45.0%
CAATTGTGTTCTGTTGGCCA+GGG - chr8.4:20688072-20688091 None:intergenic 45.0%
CCAAGAGTTTCAGGGTGATA+AGG - chr8.4:20688328-20688347 None:intergenic 45.0%
CCACTAGCAATCTCTTCTGA+AGG - chr8.4:20687956-20687975 None:intergenic 45.0%
CCATTCTTCCTTTCAACAGG+AGG - chr8.4:20686924-20686943 None:intergenic 45.0%
CCTCCTGTTGAAAGGAAGAA+TGG + chr8.4:20686921-20686940 MS.gene033240:CDS 45.0%
CCTTATCACCCTGAAACTCT+TGG + chr8.4:20688325-20688344 MS.gene033240:CDS 45.0%
CCTTCAGAAGAGATTGCTAG+TGG + chr8.4:20687953-20687972 MS.gene033240:CDS 45.0%
GAATCATCCTTCGGTTGGAT+CGG + chr8.4:20687823-20687842 MS.gene033240:CDS 45.0%
GAGATACATAATGATGCCCC+TGG + chr8.4:20688052-20688071 MS.gene033240:CDS 45.0%
GATAACTCGAGAGCTTTCCT+CGG - chr8.4:20687134-20687153 None:intergenic 45.0%
GCACATATGATGCAATTGGC+AGG + chr8.4:20688368-20688387 MS.gene033240:CDS 45.0%
GCACCCCTTTCATGATATTG+AGG + chr8.4:20688480-20688499 MS.gene033240:intron 45.0%
GCTGGCACATATGATGCAAT+TGG + chr8.4:20688364-20688383 MS.gene033240:CDS 45.0%
GGAGACACTTATGCTATGCT+AGG + chr8.4:20687362-20687381 MS.gene033240:CDS 45.0%
GGAGTAACTGATCCAAGAGT+TGG + chr8.4:20687446-20687465 MS.gene033240:CDS 45.0%
GGGGGTCATATACTATGTGT+TGG + chr8.4:20688111-20688130 MS.gene033240:CDS 45.0%
GGGGTATATAGCAATCTTGC+TGG + chr8.4:20688346-20688365 MS.gene033240:CDS 45.0%
GGTATCAAATGGCCAAGAAG+TGG + chr8.4:20687685-20687704 MS.gene033240:CDS 45.0%
GTACATTGTAGTTGTGAGGG+AGG + chr8.4:20688777-20688796 MS.gene033240:CDS 45.0%
GTTGTGAGGGAGGAAAAACT+TGG + chr8.4:20688787-20688806 MS.gene033240:CDS 45.0%
TAATTTGACAGCCTCGCTCA+AGG - chr8.4:20688266-20688285 None:intergenic 45.0%
TGAAGGAAACAGGCAGAGTT+CGG + chr8.4:20688860-20688879 MS.gene033240:CDS 45.0%
TGCAAATGGGAAACCGAGTT+TGG + chr8.4:20687184-20687203 MS.gene033240:CDS 45.0%
TGCAATTTGACGAAGCAGAG+AGG + chr8.4:20687510-20687529 MS.gene033240:CDS 45.0%
TGGATCGGTCTTTGTACGTT+TGG + chr8.4:20687838-20687857 MS.gene033240:CDS 45.0%
TGTCTCAAAGCTTCGAGCTA+CGG + chr8.4:20688171-20688190 MS.gene033240:CDS 45.0%
TGTGGGCTCAATGGTATTCT+TGG - chr8.4:20686648-20686667 None:intergenic 45.0%
TTAGGTGTTTGTGGGCTCAA+TGG - chr8.4:20686657-20686676 None:intergenic 45.0%
TTCACCCTCTTCTCTTGAAG+AGG + chr8.4:20687571-20687590 MS.gene033240:CDS 45.0%
!! GCGGTTTTCAAGACTCACAA+AGG + chr8.4:20687797-20687816 MS.gene033240:CDS 45.0%
!!! GCACCTTGTTTTAGCAAGCA+TGG + chr8.4:20687658-20687677 MS.gene033240:CDS 45.0%
!!! TCAACAGGAGGTTTTGAAGG+AGG - chr8.4:20686912-20686931 None:intergenic 45.0%
ACAAAGACCGATCCAACCGA+AGG - chr8.4:20687833-20687852 None:intergenic 50.0%
AGCACTCGAGTTACTGCACA+AGG + chr8.4:20688024-20688043 MS.gene033240:CDS 50.0%
CGTCGTATCGAGCCAATGAT+AGG - chr8.4:20687748-20687767 None:intergenic 50.0%
CTCTTCTCTTGAAGAGGCAG+CGG + chr8.4:20687577-20687596 MS.gene033240:CDS 50.0%
GCAACTTAATGCCTTGAGCG+AGG + chr8.4:20688252-20688271 MS.gene033240:CDS 50.0%
GCAATTGTGTTCTGTTGGCC+AGG - chr8.4:20688073-20688092 None:intergenic 50.0%
GCTGCCTCTTCAAGAGAAGA+GGG - chr8.4:20687578-20687597 None:intergenic 50.0%
GGCCAACAGAACACAATTGC+AGG + chr8.4:20688073-20688092 MS.gene033240:CDS 50.0%
GTCTCAAAGCTTCGAGCTAC+GGG + chr8.4:20688172-20688191 MS.gene033240:CDS 50.0%
GTCTCCAAGTTGCATGTGAC+TGG - chr8.4:20687348-20687367 None:intergenic 50.0%
TGGGAAACCGAGTTTGGATC+TGG + chr8.4:20687190-20687209 MS.gene033240:CDS 50.0%
TTCGCCAGTCACATGCAACT+TGG + chr8.4:20687341-20687360 MS.gene033240:CDS 50.0%
TTGAAGAGGCAGCGGATAGA+AGG + chr8.4:20687585-20687604 MS.gene033240:CDS 50.0%
! ATCTCTTCTGAAGGAACGCC+AGG - chr8.4:20687947-20687966 None:intergenic 50.0%
! GCAGCGGATAGAAGGTTGAT+GGG + chr8.4:20687593-20687612 MS.gene033240:CDS 50.0%
! GCGTCTGTTGATTGCAGCAT+TGG + chr8.4:20687713-20687732 MS.gene033240:CDS 50.0%
!! ATCATTGGCTCGATACGACG+AGG + chr8.4:20687748-20687767 MS.gene033240:CDS 50.0%
CAGACGCCACTTCCACTTCT+TGG - chr8.4:20687700-20687719 None:intergenic 55.0%
CGCTGCCTCTTCAAGAGAAG+AGG - chr8.4:20687579-20687598 None:intergenic 55.0%
GGAGGGAATCATCCTTCGGT+TGG + chr8.4:20687818-20687837 MS.gene033240:CDS 55.0%
GGCAGCGGATAGAAGGTTGA+TGG + chr8.4:20687592-20687611 MS.gene033240:CDS 55.0%
TCGATACGACGAGGCCATCT+TGG + chr8.4:20687757-20687776 MS.gene033240:CDS 55.0%
TCTGAAGGAACGCCAGGCAT+GGG - chr8.4:20687941-20687960 None:intergenic 55.0%
TGTTGAGGAAGGCCAGCAAC+AGG + chr8.4:20687307-20687326 MS.gene033240:CDS 55.0%
! TTCTGAAGGAACGCCAGGCA+TGG - chr8.4:20687942-20687961 None:intergenic 55.0%
!! TGCTGGCCTTCCTCAACAAC+AGG - chr8.4:20687305-20687324 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 20686555 20688933 20686555 ID=MS.gene033240
chr8.4 mRNA 20686555 20688933 20686555 ID=MS.gene033240.t1;Parent=MS.gene033240
chr8.4 exon 20686555 20688389 20686555 ID=MS.gene033240.t1.exon1;Parent=MS.gene033240.t1
chr8.4 CDS 20686555 20688389 20686555 ID=cds.MS.gene033240.t1;Parent=MS.gene033240.t1
chr8.4 exon 20688750 20688933 20688750 ID=MS.gene033240.t1.exon2;Parent=MS.gene033240.t1
chr8.4 CDS 20688750 20688933 20688750 ID=cds.MS.gene033240.t1;Parent=MS.gene033240.t1
Gene Sequence

>MS.gene033240

ATGCCAGGTATTGTTCCAATTGAAGGAAATAAAATGAATGAACTTGAGAACCCTTCACCCTCTAAGAACATATATAATAAAATCAATTCACCAAGAATACCATTGAGCCCACAAACACCTAAAAGTGTTGAGAGGTTTCATGAAATTGTACATGATGCAAGACGTTCGCGTCGAACACGCTCAAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTTTAACTGATTCAGAATTTAGCCATATTAGTGGAGAACAAATGAGGAAGATGGAGATAGTGAAAGAGGAAATGGTGAAAAAGATACTGAGGGATTCTAGCAGTGAAACACCATCAATATCAAGAGCTAAGGGAAAAAATCCTCCTTCAAAACCTCCTGTTGAAAGGAAGAATGGAAACAATCCTTTGAGAAAACAAAGTACAACAGTTACTAATCGTGTTGTAAAACCTAAGAATGCTTCTATTGGAAGATCAAGGTCACAAAGTCGAGTCGACGATTCTAAGGAATCAACATTTGATAATCCTGAGCTTGGACCATTTTTATTAAAGAAAGCAAGGGATTTGATTTCATTAGGAGAGAATCCGAGGAAAGCTCTCGAGTTATCGCTTCAAGCGATGAAATTGTTTGAGAATTCTGCAAATGGGAAACCGAGTTTGGATCTGGTTATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGTCATTATAATGAGGCAATTCCAATTTTAGAGCGATCGATCGAAATTCCTGTTGTTGAGGAAGGCCAGCAACAGGCAATTGCGAAATTCGCCAGTCACATGCAACTTGGAGACACTTATGCTATGCTAGGCCAACTTGAGAATTCAATTATGTGTTACAATAATGGGTTGGAAGTACAAAGAAAGGTTTTGGGAGTAACTGATCCAAGAGTTGGTGAAACTTGTAGGTATGTAGCAGAAGCTAATTTTCAAGCATTGCAATTTGACGAAGCAGAGAGGCTGTGTCAAATTGCTCTTGATATTCATAGAGAAAATGGTTCACCCTCTTCTCTTGAAGAGGCAGCGGATAGAAGGTTGATGGGTCTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAGCACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAAGTGGAAGTGGCGTCTGTTGATTGCAGCATTGGAGACACATTCCTATCATTGGCTCGATACGACGAGGCCATCTTGGCGTATAAAAAAGCGTTAGCGGTTTTCAAGACTCACAAAGGAGGGAATCATCCTTCGGTTGGATCGGTCTTTGTACGTTTGGCTGAGTTGTATAATAGAACATGGAAGGTAAGGGAATCAAAATTATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGCCTGGCGTTCCTTCAGAAGAGATTGCTAGTGGTCTTGTGAACGTTGCAGCTATTTACGAGTCAATGAATGAGCTTGAACAAGCACTCGAGTTACTGCACAAGGCACTAGAGATACATAATGATGCCCCTGGCCAACAGAACACAATTGCAGGAATTGAAGCTCAAATGGGGGTCATATACTATGTGTTGGGAAACCAGACTGAATCTTACAATGCTTTCAAGAATGCTGTCTCAAAGCTTCGAGCTACGGGAGAGAAAAAATCGGCTTTCTTTGGTTTTGTTCTTAATCAAATGGGCCTTTGTTGTGTGCAACTTAATGCCTTGAGCGAGGCTGTCAAATTATTTGAAGAAGCAAAGATTGTTTTGGAACAAGAGTACGGTCCTTATCACCCTGAAACTCTTGGGGTATATAGCAATCTTGCTGGCACATATGATGCAATTGGCAGGTATACATTCTTAGTTTGTGACTGTCTTTTTTTGTTGTTATACTTATACCCACGTTTGTTTGCAAGTATTACTTCAAGAGTTGAATATTTGCACCCCTTTCATGATATTGAGGCATTATCCAAAGCAAGCTATAGTTATTTGTGATGTTGTATATATATTTTACTAGATCTAATAATCAAGTAGGGCCACTAATGTTCAAAATTAGTATAATGTCTATTATTTGAATAAACCAACCCACAGTATATGGTATGTAGTTTCTTGCTTCGCGGTTTTTGAGATTTATATAGGTTAGATATGATCAAATAAGAAATGATTATGTGAAAGTTATTTTGTTCATGTACTATGATATGCTATTTCAGGATGGACGATGCAATTGATATTATGGAGTACATTGTAGTTGTGAGGGAGGAAAAACTTGGGACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGGTTGGAAGTATTGTTGAAGGAAACAGGCAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGATTCTTCTTGATGTTAATGAGGACTAA

Protein sequence

>MS.gene033240.t1

MPGIVPIEGNKMNELENPSPSKNIYNKINSPRIPLSPQTPKSVERFHEIVHDARRSRRTRSSQSFGSDSDWSLTDSEFSHISGEQMRKMEIVKEEMVKKILRDSSSETPSISRAKGKNPPSKPPVERKNGNNPLRKQSTTVTNRVVKPKNASIGRSRSQSRVDDSKESTFDNPELGPFLLKKARDLISLGENPRKALELSLQAMKLFENSANGKPSLDLVMCLHVTAAIYCSLGHYNEAIPILERSIEIPVVEEGQQQAIAKFASHMQLGDTYAMLGQLENSIMCYNNGLEVQRKVLGVTDPRVGETCRYVAEANFQALQFDEAERLCQIALDIHRENGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGGNHPSVGSVFVRLAELYNRTWKVRESKLYCENALKIYENPMPGVPSEEIASGLVNVAAIYESMNELEQALELLHKALEIHNDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAVSKLRATGEKKSAFFGFVLNQMGLCCVQLNALSEAVKLFEEAKIVLEQEYGPYHPETLGVYSNLAGTYDAIGRMDDAIDIMEYIVVVREEKLGTAHFDVVDEKRRLEVLLKETGRVRNRKTKSLEILLDVNED