Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033336.t1 | XP_003608888.2 | 98.1 | 466 | 9 | 0 | 1 | 466 | 1 | 466 | 9.60E-260 | 905.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033336.t1 | Q93Y08 | 34.6 | 298 | 172 | 7 | 78 | 367 | 229 | 511 | 1.6e-40 | 168.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033336.t1 | G7JMM5 | 98.1 | 466 | 9 | 0 | 1 | 466 | 1 | 466 | 6.9e-260 | 905.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033336 | MS.gene057146 | PPI |
| MS.gene033336 | MS.gene011377 | PPI |
| MS.gene033336 | MS.gene48278 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033336.t1 | MTR_4g104070 | 98.069 | 466 | 9 | 0 | 1 | 466 | 1 | 466 | 0.0 | 945 |
| MS.gene033336.t1 | MTR_1g008980 | 31.614 | 446 | 274 | 10 | 24 | 456 | 8 | 435 | 2.81e-60 | 211 |
| MS.gene033336.t1 | MTR_3g094740 | 28.189 | 486 | 285 | 14 | 20 | 466 | 158 | 618 | 1.82e-46 | 172 |
| MS.gene033336.t1 | MTR_3g094740 | 28.189 | 486 | 285 | 14 | 20 | 466 | 158 | 618 | 2.44e-46 | 171 |
| MS.gene033336.t1 | MTR_8g091710 | 28.602 | 472 | 283 | 13 | 20 | 455 | 149 | 602 | 6.00e-45 | 167 |
| MS.gene033336.t1 | MTR_3g082750 | 27.079 | 469 | 273 | 13 | 20 | 455 | 148 | 580 | 4.60e-39 | 150 |
| MS.gene033336.t1 | MTR_5g068050 | 31.274 | 259 | 164 | 4 | 78 | 332 | 135 | 383 | 7.60e-39 | 148 |
| MS.gene033336.t1 | MTR_6g038750 | 28.010 | 407 | 259 | 10 | 61 | 459 | 122 | 502 | 1.66e-37 | 146 |
| MS.gene033336.t1 | MTR_5g077080 | 26.218 | 431 | 280 | 10 | 16 | 432 | 34 | 440 | 3.79e-36 | 140 |
| MS.gene033336.t1 | MTR_4g026450 | 26.263 | 396 | 263 | 10 | 59 | 441 | 136 | 515 | 4.05e-35 | 139 |
| MS.gene033336.t1 | MTR_1g009860 | 29.773 | 309 | 188 | 8 | 68 | 366 | 131 | 420 | 2.81e-32 | 130 |
| MS.gene033336.t1 | MTR_1g009860 | 29.773 | 309 | 188 | 8 | 68 | 366 | 131 | 420 | 3.19e-32 | 130 |
| MS.gene033336.t1 | MTR_3g070410 | 29.781 | 319 | 197 | 8 | 64 | 366 | 83 | 390 | 6.06e-32 | 129 |
| MS.gene033336.t1 | MTR_0053s0030 | 24.760 | 416 | 287 | 10 | 32 | 441 | 108 | 503 | 8.35e-30 | 123 |
| MS.gene033336.t1 | MTR_1g046620 | 27.368 | 285 | 185 | 7 | 62 | 342 | 177 | 443 | 1.74e-28 | 119 |
| MS.gene033336.t1 | MTR_3g105760 | 29.236 | 301 | 180 | 10 | 83 | 367 | 136 | 419 | 2.95e-28 | 118 |
| MS.gene033336.t1 | MTR_1g095480 | 25.260 | 384 | 267 | 9 | 77 | 449 | 209 | 583 | 4.54e-24 | 105 |
| MS.gene033336.t1 | MTR_1g095480 | 25.260 | 384 | 267 | 9 | 77 | 449 | 209 | 583 | 5.40e-24 | 105 |
| MS.gene033336.t1 | MTR_1g085610 | 28.869 | 336 | 208 | 10 | 72 | 404 | 232 | 539 | 2.89e-23 | 103 |
| MS.gene033336.t1 | MTR_4g091510 | 29.582 | 311 | 171 | 11 | 79 | 360 | 229 | 520 | 5.23e-21 | 96.7 |
| MS.gene033336.t1 | MTR_4g091510 | 29.582 | 311 | 171 | 11 | 79 | 360 | 224 | 515 | 5.78e-21 | 96.3 |
| MS.gene033336.t1 | MTR_8g464860 | 28.800 | 250 | 156 | 6 | 79 | 318 | 218 | 455 | 5.13e-19 | 90.5 |
| MS.gene033336.t1 | MTR_2g011640 | 28.481 | 316 | 193 | 10 | 79 | 375 | 277 | 578 | 5.86e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033336.t1 | AT4G24810 | 75.385 | 455 | 112 | 0 | 7 | 461 | 4 | 458 | 0.0 | 733 |
| MS.gene033336.t1 | AT5G50330 | 73.951 | 453 | 118 | 0 | 8 | 460 | 5 | 457 | 0.0 | 730 |
| MS.gene033336.t1 | AT5G50330 | 71.744 | 453 | 112 | 1 | 8 | 460 | 5 | 441 | 0.0 | 698 |
| MS.gene033336.t1 | AT4G24810 | 75.663 | 415 | 101 | 0 | 47 | 461 | 1 | 415 | 0.0 | 671 |
| MS.gene033336.t1 | AT4G24810 | 75.663 | 415 | 101 | 0 | 47 | 461 | 1 | 415 | 0.0 | 671 |
| MS.gene033336.t1 | AT4G24810 | 74.408 | 422 | 101 | 1 | 47 | 461 | 1 | 422 | 0.0 | 664 |
| MS.gene033336.t1 | AT4G24810 | 76.341 | 317 | 75 | 0 | 47 | 363 | 1 | 317 | 0.0 | 514 |
| MS.gene033336.t1 | AT4G24810 | 78.000 | 300 | 66 | 0 | 47 | 346 | 1 | 300 | 1.36e-176 | 497 |
| MS.gene033336.t1 | AT5G24810 | 29.348 | 460 | 282 | 13 | 24 | 455 | 55 | 499 | 5.71e-53 | 192 |
| MS.gene033336.t1 | AT5G24810 | 27.699 | 491 | 281 | 15 | 24 | 455 | 55 | 530 | 7.49e-48 | 177 |
| MS.gene033336.t1 | AT5G64940 | 34.228 | 298 | 173 | 7 | 78 | 367 | 229 | 511 | 5.97e-45 | 167 |
| MS.gene033336.t1 | AT5G64940 | 34.228 | 298 | 173 | 7 | 78 | 367 | 229 | 511 | 5.97e-45 | 167 |
| MS.gene033336.t1 | AT1G65950 | 30.351 | 313 | 200 | 6 | 64 | 372 | 95 | 393 | 1.06e-42 | 157 |
| MS.gene033336.t1 | AT1G65950 | 28.093 | 388 | 247 | 10 | 64 | 438 | 95 | 463 | 1.86e-42 | 158 |
| MS.gene033336.t1 | AT3G07700 | 28.602 | 465 | 265 | 14 | 32 | 465 | 149 | 577 | 1.76e-40 | 154 |
| MS.gene033336.t1 | AT3G07700 | 28.602 | 465 | 265 | 14 | 32 | 465 | 149 | 577 | 1.76e-40 | 154 |
| MS.gene033336.t1 | AT3G07700 | 28.602 | 465 | 265 | 14 | 32 | 465 | 149 | 577 | 1.76e-40 | 154 |
| MS.gene033336.t1 | AT1G71810 | 28.395 | 405 | 258 | 9 | 61 | 458 | 113 | 492 | 1.21e-38 | 149 |
| MS.gene033336.t1 | AT3G07700 | 30.769 | 403 | 217 | 14 | 32 | 422 | 149 | 501 | 2.50e-38 | 148 |
| MS.gene033336.t1 | AT5G05200 | 30.116 | 259 | 167 | 4 | 78 | 332 | 136 | 384 | 4.97e-38 | 145 |
| MS.gene033336.t1 | AT1G79600 | 29.942 | 344 | 217 | 11 | 27 | 365 | 110 | 434 | 3.81e-34 | 136 |
| MS.gene033336.t1 | AT2G40090 | 29.467 | 319 | 198 | 7 | 64 | 366 | 85 | 392 | 1.31e-32 | 130 |
| MS.gene033336.t1 | AT4G31390 | 27.541 | 305 | 200 | 7 | 68 | 366 | 167 | 456 | 7.59e-31 | 126 |
| MS.gene033336.t1 | AT5G24970 | 27.974 | 311 | 191 | 9 | 78 | 367 | 186 | 484 | 1.34e-29 | 122 |
| MS.gene033336.t1 | AT5G24970 | 28.065 | 310 | 190 | 9 | 78 | 366 | 147 | 444 | 1.64e-29 | 122 |
| MS.gene033336.t1 | AT2G39190 | 24.318 | 440 | 304 | 10 | 32 | 455 | 165 | 591 | 4.97e-29 | 121 |
| MS.gene033336.t1 | AT3G24190 | 28.070 | 285 | 183 | 7 | 62 | 342 | 185 | 451 | 4.35e-28 | 118 |
| MS.gene033336.t1 | AT5G24970 | 27.832 | 309 | 189 | 9 | 78 | 366 | 147 | 441 | 4.72e-28 | 118 |
| MS.gene033336.t1 | AT4G31390 | 27.941 | 272 | 176 | 6 | 100 | 366 | 1 | 257 | 8.90e-27 | 113 |
| MS.gene033336.t1 | AT4G31390 | 23.699 | 346 | 210 | 7 | 68 | 412 | 167 | 459 | 2.80e-25 | 109 |
| MS.gene033336.t1 | AT1G11390 | 30.675 | 326 | 179 | 12 | 79 | 377 | 224 | 529 | 1.38e-24 | 107 |
| MS.gene033336.t1 | AT4G01660 | 27.979 | 386 | 243 | 14 | 72 | 443 | 230 | 594 | 6.86e-23 | 102 |
| MS.gene033336.t1 | AT1G61640 | 28.613 | 346 | 194 | 12 | 62 | 377 | 204 | 526 | 3.48e-22 | 100 |
| MS.gene033336.t1 | AT1G61640 | 29.155 | 343 | 196 | 12 | 62 | 377 | 204 | 526 | 3.69e-22 | 100 |
| MS.gene033336.t1 | AT1G61640 | 30.275 | 218 | 121 | 8 | 62 | 260 | 204 | 409 | 4.45e-14 | 74.7 |
| MS.gene033336.t1 | AT2G39190 | 26.020 | 196 | 130 | 5 | 32 | 220 | 165 | 352 | 9.52e-12 | 67.0 |
Find 102 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGATTGCGCAAATTAT+TGG | 0.195300 | 8.2:+20479279 | MS.gene033336:intron |
| TTCAACGTTCCTTTCAGTTC+TGG | 0.207099 | 8.2:+20478856 | MS.gene033336:CDS |
| TCATCACCAAGGTTCATTAT+TGG | 0.239498 | 8.2:-20483506 | None:intergenic |
| TCTCAAGCTGGCAGATTTAA+AGG | 0.258548 | 8.2:+20487187 | MS.gene033336:CDS |
| AAACAGAAGGGCTCCTGTTT+TGG | 0.286377 | 8.2:+20482797 | MS.gene033336:CDS |
| TCAACGTTCCTTTCAGTTCT+GGG | 0.302849 | 8.2:+20478857 | MS.gene033336:CDS |
| AATTATTGGGAAGCCGGATT+TGG | 0.335249 | 8.2:+20479293 | MS.gene033336:CDS |
| TTACAAATCAGGATATTTCC+TGG | 0.335267 | 8.2:-20484732 | None:intergenic |
| AGTATAGAAAACAGTTCTTC+TGG | 0.335576 | 8.2:-20487070 | None:intergenic |
| CCTCTGATCCTTTACAAATC+AGG | 0.345654 | 8.2:-20484743 | None:intergenic |
| TTCTCTATGTGCTCTGACCT+TGG | 0.346332 | 8.2:+20479152 | MS.gene033336:CDS |
| TTCAGATTGCGCAAATTATT+GGG | 0.360580 | 8.2:+20479280 | MS.gene033336:intron |
| ATAACTCTTGGCACCAAAAC+AGG | 0.373813 | 8.2:-20482810 | None:intergenic |
| TATCAAATTTGATCTATATT+CGG | 0.379452 | 8.2:+20481063 | MS.gene033336:CDS |
| GGTTCAGCATCCTGGAGTTC+AGG | 0.380936 | 8.2:+20480979 | MS.gene033336:intron |
| CAGGTTGCCTTGCTAGATTA+TGG | 0.385760 | 8.2:+20484984 | MS.gene033336:intron |
| GCCAAGAGTTATACGTGATA+TGG | 0.403905 | 8.2:+20482821 | MS.gene033336:CDS |
| GCACATAGAGAAAATCTTAT+CGG | 0.408274 | 8.2:-20479141 | None:intergenic |
| CCTTGGTGGTTTCTTCCTCA+AGG | 0.408617 | 8.2:+20479169 | MS.gene033336:CDS |
| CATGCAGCAGGTGCCAAATC+CGG | 0.412637 | 8.2:-20479306 | None:intergenic |
| ATTGAAGATTCTTCTGAAAA+CGG | 0.417455 | 8.2:-20486394 | None:intergenic |
| TGGTTCCGCTTCAATTGCTC+AGG | 0.426090 | 8.2:+20479458 | MS.gene033336:CDS |
| CGAGAGCTTCAGAGAGCTAT+AGG | 0.428283 | 8.2:+20485084 | MS.gene033336:CDS |
| CAAAGTTTGACTCTAGCATA+TGG | 0.430340 | 8.2:+20484666 | MS.gene033336:CDS |
| GTCAGGAGCTTACTGCTTTG+CGG | 0.441507 | 8.2:-20483573 | None:intergenic |
| CGTTGAGATCAACGACGATA+GGG | 0.450304 | 8.2:-20478797 | None:intergenic |
| ATATTCGGTGACAAAGGAAA+TGG | 0.452484 | 8.2:+20481078 | MS.gene033336:CDS |
| CACCTGCTGCATGGGTGAAA+AGG | 0.452544 | 8.2:+20479316 | MS.gene033336:CDS |
| GACAGAGCTTCTTCAGCAAT+GGG | 0.454662 | 8.2:-20487166 | None:intergenic |
| AGATTTGATGTTGAGCCTCT+TGG | 0.457578 | 8.2:+20479438 | MS.gene033336:CDS |
| TGCGCAAATTATTGGGAAGC+CGG | 0.465800 | 8.2:+20479287 | MS.gene033336:CDS |
| GTACAGAAAGGTCCTAGTTA+TGG | 0.467202 | 8.2:+20483466 | MS.gene033336:intron |
| TTAACAGTGTGATAAGAAGT+TGG | 0.469895 | 8.2:-20479366 | None:intergenic |
| TTCCACGCGGATCCTCATCC+AGG | 0.470369 | 8.2:+20484714 | MS.gene033336:CDS |
| CTTGTGCTTGAGAACGAGCT+TGG | 0.472959 | 8.2:+20479390 | MS.gene033336:CDS |
| CGTCAATATATTCCATAACT+AGG | 0.475606 | 8.2:-20483478 | None:intergenic |
| TAACCAAGCCTCAATTGCTC+CGG | 0.479380 | 8.2:-20485023 | None:intergenic |
| ATGCAACAGGTTCAGCATCC+TGG | 0.483919 | 8.2:+20480971 | MS.gene033336:intron |
| ATCATCAGATCCTGAACTCC+AGG | 0.485022 | 8.2:-20480989 | None:intergenic |
| CGGATTTGGCACCTGCTGCA+TGG | 0.486595 | 8.2:+20479307 | MS.gene033336:CDS |
| AACTGAAAGGAACGTTGAAT+AGG | 0.489805 | 8.2:-20478852 | None:intergenic |
| GGAAATATCCTGATTTGTAA+AGG | 0.495713 | 8.2:+20484735 | MS.gene033336:CDS |
| CTCCCGGAGCAATTGAGGCT+TGG | 0.496977 | 8.2:+20485020 | MS.gene033336:CDS |
| AGACAGAGCTTCTTCAGCAA+TGG | 0.501850 | 8.2:-20487167 | None:intergenic |
| ACCATATCACGTATAACTCT+TGG | 0.511192 | 8.2:-20482822 | None:intergenic |
| TGGACAGGTGAAAGATCTCC+CGG | 0.516596 | 8.2:+20485004 | MS.gene033336:CDS |
| TGATATTTACACCGGATACA+AGG | 0.518696 | 8.2:+20478890 | MS.gene033336:CDS |
| ATCAGGATATTTCCTGGATG+AGG | 0.526537 | 8.2:-20484726 | None:intergenic |
| AAGATCTCCCGGAGCAATTG+AGG | 0.528522 | 8.2:+20485015 | MS.gene033336:CDS |
| TCTATGTGCTCTGACCTTGG+TGG | 0.528676 | 8.2:+20479155 | MS.gene033336:CDS |
| CTCGTTCTTGCAATTGCTGA+CGG | 0.533692 | 8.2:+20485053 | MS.gene033336:CDS |
| GATATGAATTTGACTTCATG+AGG | 0.535036 | 8.2:+20482730 | MS.gene033336:CDS |
| TTTGATACAAAATTACCTCC+TGG | 0.535837 | 8.2:+20486355 | MS.gene033336:CDS |
| TGCTGCATGGGTGAAAAGGC+TGG | 0.536049 | 8.2:+20479320 | MS.gene033336:CDS |
| TCGTTGAGATCAACGACGAT+AGG | 0.536778 | 8.2:-20478798 | None:intergenic |
| AGAGAAAGGAACCTTGTATC+CGG | 0.538286 | 8.2:-20478901 | None:intergenic |
| TGCCTTGCTAGATTATGGAC+AGG | 0.538362 | 8.2:+20484989 | MS.gene033336:CDS |
| TAGTTATGGAATATATTGAC+GGG | 0.539385 | 8.2:+20483480 | MS.gene033336:CDS |
| AACCAAGCCTCAATTGCTCC+GGG | 0.550223 | 8.2:-20485022 | None:intergenic |
| CTAGTTATGGAATATATTGA+CGG | 0.551233 | 8.2:+20483479 | MS.gene033336:CDS |
| GTTCATAAAGCAAGACTGAA+AGG | 0.551989 | 8.2:+20480857 | MS.gene033336:CDS |
| TCGGACAGTGCATCTACTGA+GGG | 0.554413 | 8.2:+20487093 | MS.gene033336:CDS |
| GGATTTGGCACCTGCTGCAT+GGG | 0.555700 | 8.2:+20479308 | MS.gene033336:CDS |
| TAGCTCTCTGAAGCTCTCGC+TGG | 0.557916 | 8.2:-20485080 | None:intergenic |
| TTATACGTGATATGGTTACT+AGG | 0.558693 | 8.2:+20482829 | MS.gene033336:CDS |
| ATTATTCTTGTGCGGAACAG+TGG | 0.558964 | 8.2:+20487140 | MS.gene033336:CDS |
| TCTTGTATAAAATAAACAGA+AGG | 0.559081 | 8.2:+20482784 | MS.gene033336:CDS |
| GCAACAAGAAATGCTTAAGC+TGG | 0.561159 | 8.2:+20486321 | MS.gene033336:CDS |
| CTACTGAGGGGACTTAGTGT+TGG | 0.562359 | 8.2:+20487106 | MS.gene033336:CDS |
| AGGCATAGATCCTCATGGTA+AGG | 0.570344 | 8.2:+20483541 | MS.gene033336:CDS |
| CGAGCAATTGATATTTACAC+CGG | 0.573969 | 8.2:+20478882 | MS.gene033336:CDS |
| CAAAAGTGATGTTGTTGTCA+AGG | 0.574147 | 8.2:+20480883 | MS.gene033336:CDS |
| GAAGAAGCTCTGTCTCAAGC+TGG | 0.580688 | 8.2:+20487175 | MS.gene033336:CDS |
| TGGAATCAATTATTCTTGTG+CGG | 0.581933 | 8.2:+20487132 | MS.gene033336:CDS |
| TGATCTATATTCGGTGACAA+AGG | 0.583856 | 8.2:+20481072 | MS.gene033336:CDS |
| TTGAGATCAACGACGATAGG+GGG | 0.584047 | 8.2:-20478795 | None:intergenic |
| CATGAGGGAGGCCAGTGCAA+TGG | 0.584554 | 8.2:+20482746 | MS.gene033336:CDS |
| AGGGGACTTAGTGTTGGACT+TGG | 0.590897 | 8.2:+20487112 | MS.gene033336:CDS |
| TTGAATAGGACGAAACTGAA+CGG | 0.594834 | 8.2:-20478838 | None:intergenic |
| CACAGAAGCAAGAAGCAATG+TGG | 0.595774 | 8.2:+20479096 | MS.gene033336:CDS |
| ACAGAAGCAAGAAGCAATGT+GGG | 0.599745 | 8.2:+20479097 | MS.gene033336:CDS |
| CTTGTATAAAATAAACAGAA+GGG | 0.600859 | 8.2:+20482785 | MS.gene033336:CDS |
| CCTGATTTGTAAAGGATCAG+AGG | 0.602272 | 8.2:+20484743 | MS.gene033336:CDS |
| CACCTGTCCATAATCTAGCA+AGG | 0.614889 | 8.2:-20484991 | None:intergenic |
| ACAGTGTGATAAGAAGTTGG+TGG | 0.616405 | 8.2:-20479363 | None:intergenic |
| GGGATTCCAATAATGAACCT+TGG | 0.621804 | 8.2:+20483500 | MS.gene033336:CDS |
| TGCTCGAACCCAGAACTGAA+AGG | 0.623946 | 8.2:-20478865 | None:intergenic |
| TCTTCGCTATTTCATCACCA+AGG | 0.628886 | 8.2:-20483517 | None:intergenic |
| GACAAAGGAAATGGAAACAC+AGG | 0.633060 | 8.2:+20481087 | MS.gene033336:CDS |
| TGAATTTGACTTCATGAGGG+AGG | 0.638963 | 8.2:+20482734 | MS.gene033336:CDS |
| GTTGAGATCAACGACGATAG+GGG | 0.639810 | 8.2:-20478796 | None:intergenic |
| GCAATTGAAGCGGAACCAAG+AGG | 0.641988 | 8.2:-20479453 | None:intergenic |
| TTCGGACAGTGCATCTACTG+AGG | 0.642652 | 8.2:+20487092 | MS.gene033336:CDS |
| ACAAACCTGAGCAATTGAAG+CGG | 0.647781 | 8.2:-20479463 | None:intergenic |
| AAGAGAGGCATAGATCCTCA+TGG | 0.649720 | 8.2:+20483536 | MS.gene033336:CDS |
| ATATGAATTTGACTTCATGA+GGG | 0.661602 | 8.2:+20482731 | MS.gene033336:CDS |
| GGTGATGAAATAGCGAAGAG+AGG | 0.673065 | 8.2:+20483521 | MS.gene033336:CDS |
| GCAGCTGCAACCTTACCATG+AGG | 0.718002 | 8.2:-20483551 | None:intergenic |
| CGGACAGTGCATCTACTGAG+GGG | 0.755015 | 8.2:+20487094 | MS.gene033336:CDS |
| CCTTGAGGAAGAAACCACCA+AGG | 0.783560 | 8.2:-20479169 | None:intergenic |
| TTCCTGGATGAGGATCCGCG+TGG | 0.793865 | 8.2:-20484716 | None:intergenic |
| GAAAAGTGGATTCTTCCACG+CGG | 0.814549 | 8.2:+20484701 | MS.gene033336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 20478789 | 20487231 | 20478789 | ID=MS.gene033336 |
| chr8.2 | mRNA | 20478789 | 20487231 | 20478789 | ID=MS.gene033336.t1;Parent=MS.gene033336 |
| chr8.2 | exon | 20478789 | 20478911 | 20478789 | ID=MS.gene033336.t1.exon1;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20478789 | 20478911 | 20478789 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20479062 | 20479190 | 20479062 | ID=MS.gene033336.t1.exon2;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20479062 | 20479190 | 20479062 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20479285 | 20479479 | 20479285 | ID=MS.gene033336.t1.exon3;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20479285 | 20479479 | 20479285 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20480857 | 20480904 | 20480857 | ID=MS.gene033336.t1.exon4;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20480857 | 20480904 | 20480857 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20480980 | 20481108 | 20480980 | ID=MS.gene033336.t1.exon5;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20480980 | 20481108 | 20480980 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20482726 | 20482850 | 20482726 | ID=MS.gene033336.t1.exon6;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20482726 | 20482850 | 20482726 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20483472 | 20483582 | 20483472 | ID=MS.gene033336.t1.exon7;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20483472 | 20483582 | 20483472 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20484656 | 20484764 | 20484656 | ID=MS.gene033336.t1.exon8;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20484656 | 20484764 | 20484656 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20484987 | 20485105 | 20484987 | ID=MS.gene033336.t1.exon9;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20484987 | 20485105 | 20484987 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20486282 | 20486435 | 20486282 | ID=MS.gene033336.t1.exon10;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20486282 | 20486435 | 20486282 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| chr8.2 | exon | 20487064 | 20487231 | 20487064 | ID=MS.gene033336.t1.exon11;Parent=MS.gene033336.t1 |
| chr8.2 | CDS | 20487064 | 20487231 | 20487064 | ID=cds.MS.gene033336.t1;Parent=MS.gene033336.t1 |
| Gene Sequence |
| Protein sequence |