AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03360.t1 MTR_4g045707 75.835 389 93 1 1 389 1 388 0.0 592
MS.gene03360.t1 MTR_3g101010 70.284 387 112 2 5 389 4 389 0.0 525
MS.gene03360.t1 MTR_3g018740 67.708 384 122 2 5 387 4 386 0.0 518
MS.gene03360.t1 MTR_3g048000 65.879 381 112 2 7 387 28 390 1.15e-179 505
MS.gene03360.t1 MTR_8g027395 64.858 387 127 3 6 389 17 397 1.20e-175 495
MS.gene03360.t1 MTR_2g046030 64.524 389 126 4 5 387 4 386 1.35e-173 489
MS.gene03360.t1 MTR_3g101030 64.146 410 119 10 4 389 24 429 2.39e-172 488
MS.gene03360.t1 MTR_2g045980 65.296 389 123 5 5 387 4 386 2.92e-172 486
MS.gene03360.t1 MTR_8g461160 62.879 396 134 5 1 387 1 392 1.37e-168 477
MS.gene03360.t1 MTR_3g101180 60.150 399 146 4 1 387 1 398 2.74e-163 464
MS.gene03360.t1 MTR_7g451890 60.567 388 146 3 6 387 14 400 2.82e-163 464
MS.gene03360.t1 MTR_8g027420 61.719 384 133 3 6 389 6 375 7.11e-162 459
MS.gene03360.t1 MTR_7g047780 59.536 388 150 3 6 387 14 400 3.38e-160 456
MS.gene03360.t1 MTR_4g088525 62.125 367 130 3 25 388 8 368 1.24e-159 453
MS.gene03360.t1 MTR_7g050750 60.411 389 147 4 5 387 7 394 1.43e-159 454
MS.gene03360.t1 MTR_3g101130 59.596 396 146 5 1 389 1 389 2.08e-157 448
MS.gene03360.t1 MTR_4g088535 61.155 381 129 3 4 384 5 366 2.48e-157 448
MS.gene03360.t1 MTR_7g050810 59.536 388 150 3 6 387 16 402 5.39e-157 448
MS.gene03360.t1 MTR_3g101050 60.506 395 126 7 3 388 24 397 3.58e-148 425
MS.gene03360.t1 MTR_3g102920 57.692 390 122 7 4 387 56 408 1.41e-137 399
MS.gene03360.t1 MTR_3g015620 56.701 388 137 5 6 387 16 378 2.91e-137 397
MS.gene03360.t1 MTR_3g101200 53.690 393 148 7 1 387 26 390 8.73e-127 370
MS.gene03360.t1 MTR_3g100995 67.451 255 79 3 134 387 11 262 1.36e-121 352
MS.gene03360.t1 MTR_3g101190 49.180 366 124 4 24 389 9 312 8.46e-114 335
MS.gene03360.t1 MTR_3g018747 66.154 260 71 4 130 387 9 253 2.86e-112 328
MS.gene03360.t1 MTR_7g050830 52.381 315 116 4 6 298 16 318 6.75e-106 315
MS.gene03360.t1 MTR_3g100010 53.055 311 97 3 31 308 42 336 1.03e-100 302
MS.gene03360.t1 MTR_3g015760 60.000 270 99 5 122 387 15 279 1.01e-98 295
MS.gene03360.t1 MTR_3g099970 69.036 197 43 2 130 326 20 198 2.79e-90 270
MS.gene03360.t1 MTR_3g100520 61.364 220 73 2 171 389 1 209 1.78e-88 266
MS.gene03360.t1 MTR_2g046410 66.827 208 58 4 187 387 144 347 4.10e-88 270
MS.gene03360.t1 MTR_3g111160 65.315 222 72 5 171 389 1 220 2.01e-87 264
MS.gene03360.t1 MTR_3g101110 56.017 241 71 5 130 363 68 280 3.68e-78 243
MS.gene03360.t1 MTR_3g114310 39.031 392 215 11 11 386 24 407 1.32e-77 246
MS.gene03360.t1 MTR_3g111150 56.497 177 53 1 8 184 1 153 8.55e-61 194
MS.gene03360.t1 MTR_3g101150 63.924 158 50 3 236 387 1 157 6.84e-60 191
MS.gene03360.t1 MTR_3g101020 56.216 185 53 3 204 387 1 158 1.30e-59 191
MS.gene03360.t1 MTR_3g102870 59.375 160 59 2 193 347 1 159 8.10e-55 179
MS.gene03360.t1 MTR_3g100990 60.305 131 52 0 4 134 3 133 9.03e-48 170
MS.gene03360.t1 MTR_4g093550 58.333 84 35 0 6 89 6 89 4.10e-24 95.5
MS.gene03360.t1 MTR_3g101080 97.143 35 1 0 345 379 5 39 1.10e-18 80.5
MS.gene03360.t1 MTR_6g046890 60.000 70 28 0 14 83 7 76 1.55e-18 81.6
MS.gene03360.t1 MTR_3g101140 57.143 70 25 2 324 389 48 116 3.08e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03360.t1 AT1G47710 54.897 388 169 5 5 387 4 390 6.60e-142 409
MS.gene03360.t1 AT1G47710 54.897 388 169 5 5 387 31 417 2.33e-141 409
MS.gene03360.t1 AT3G45220 47.716 394 185 7 6 386 5 390 3.41e-119 351
MS.gene03360.t1 AT2G25240 49.114 395 170 11 6 386 5 382 2.12e-118 349
MS.gene03360.t1 AT2G26390 48.130 401 169 11 6 386 5 386 3.32e-117 346
MS.gene03360.t1 AT1G64030 41.624 394 192 8 5 386 4 371 8.85e-101 304
MS.gene03360.t1 AT2G14540 43.445 389 190 7 5 386 32 397 7.71e-98 297
MS.gene03360.t1 AT1G62170 43.011 372 174 6 28 388 89 433 3.17e-97 296
MS.gene03360.t1 AT1G62170 39.506 405 174 7 28 388 89 466 3.47e-90 280
MS.gene03360.t1 AT2G35580 41.645 389 185 9 5 386 18 371 1.01e-89 275
MS.gene03360.t1 AT1G64010 49.083 218 86 6 171 386 1 195 2.49e-60 194
MS.gene03360.t1 AT1G64010 49.261 203 78 6 186 386 2 181 3.33e-54 177
MS.gene03360.t1 AT1G63280 53.913 115 49 2 130 242 8 120 5.56e-35 125
MS.gene03360.t1 AT1G62160 39.801 201 94 7 193 388 42 220 1.38e-33 125
MS.gene03360.t1 AT1G51330 48.649 111 54 2 129 236 30 140 1.70e-26 105
MS.gene03360.t1 AT1G64020 33.333 117 75 3 7 121 6 121 6.59e-13 65.5

Find 88 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGACTTGTGAAATATTT+TGG 0.124070 6.2:-32429520 None:intergenic
TGACCAATGAAGTTAATTTA+TGG 0.210467 6.2:+32428956 MS.gene03360:CDS
CCAAGGTTCAATGTTTCATT+TGG 0.241843 6.2:+32429390 MS.gene03360:CDS
TCATCTTGGCCTAGTTTATA+AGG 0.304109 6.2:-32429225 None:intergenic
AGCCCATAAATTAACTTCAT+TGG 0.326511 6.2:-32428959 None:intergenic
AATAGAAACGTACCTTGTTC+TGG 0.335113 6.2:-32428413 None:intergenic
GACCAATGAAGTTAATTTAT+GGG 0.343472 6.2:+32428957 MS.gene03360:CDS
CAAGGTTCAATGTTTCATTT+GGG 0.365934 6.2:+32429391 MS.gene03360:CDS
TATTTCTAATTAAAGAAGAT+TGG 0.368668 6.2:+32429652 MS.gene03360:CDS
TCTGATATGTTGAAGGAGTT+AGG 0.394592 6.2:+32429423 MS.gene03360:CDS
CTTAAACTTCCTTATAAACT+AGG 0.403498 6.2:+32429216 MS.gene03360:CDS
CCCTCTACTTCAAAGGAGTA+TGG 0.413172 6.2:+32429064 MS.gene03360:CDS
AAAGGAGTTGAGTTGATTGA+TGG 0.417224 6.2:-32428226 None:intergenic
ACCGGAGCAATCCTCTTTGT+TGG 0.418802 6.2:+32429675 MS.gene03360:CDS
GAGAGGCCATCTTTCGCATC+TGG 0.419845 6.2:-32429276 None:intergenic
CGAGGCCCTCCGGTGAGATA+AGG 0.422455 6.2:-32428282 None:intergenic
GAAAGATGGCCTCTCAGCTT+TGG 0.432705 6.2:+32429284 MS.gene03360:CDS
AAAAGAGAGGCGAGGCCCTC+CGG 0.437426 6.2:-32428292 None:intergenic
TTGTTTAAAGAAGAGATGTT+TGG 0.447288 6.2:-32428088 None:intergenic
GAGGCCCTCCGGTGAGATAA+GGG 0.450887 6.2:-32428281 None:intergenic
TGAAACTTCTGATATGTTGA+AGG 0.451585 6.2:+32429416 MS.gene03360:CDS
TCTATTTCTCAAGTTAAAGT+AGG 0.453581 6.2:+32429354 MS.gene03360:CDS
AGCAATCCTCTTTGTTGGAC+AGG 0.457539 6.2:+32429680 MS.gene03360:CDS
ATCTGTTTACAAAGCCAACT+TGG 0.459177 6.2:+32428377 MS.gene03360:CDS
TAGAGAATTGACGGTCATCT+TGG 0.462332 6.2:-32429239 None:intergenic
CATCATCGCTGCCGGCTCTG+AGG 0.467291 6.2:+32428161 MS.gene03360:CDS
ATTCTTCCAGATGCGAAAGA+TGG 0.468275 6.2:+32429270 MS.gene03360:CDS
GTCAGACCTCCGGGAGAGAA+AGG 0.477684 6.2:-32429456 None:intergenic
TAAAGTACATAGAGAATTGA+CGG 0.488589 6.2:-32429248 None:intergenic
TCTTTAATTAGAAATAAGAA+TGG 0.489113 6.2:-32429645 None:intergenic
ATCATCGCTGCCGGCTCTGA+GGG 0.489637 6.2:+32428162 MS.gene03360:CDS
TCTCAATGGCAGCTCAATCA+AGG 0.494273 6.2:+32429134 MS.gene03360:CDS
CTTTAATTAGAAATAAGAAT+GGG 0.499662 6.2:-32429644 None:intergenic
AGATGACAGAATTTGTTTGA+AGG 0.503106 6.2:-32428358 None:intergenic
GACAGAATTTGTTTGAAGGT+AGG 0.503242 6.2:-32428354 None:intergenic
CTAATTAAAGAAGATTGGAC+CGG 0.510289 6.2:+32429657 MS.gene03360:CDS
GTTGATTGATGGATTTAGAG+TGG 0.516262 6.2:-32428215 None:intergenic
TCCTTTCATGACCAGCATGA+AGG 0.520615 6.2:+32429158 MS.gene03360:CDS
GTTAAGCTGTTGACCGCCCC+TGG 0.522777 6.2:-32429021 None:intergenic
AGGACCAAAGGATTCGCAAA+AGG 0.526733 6.2:-32429589 None:intergenic
TTTAAGTACTTTAAAACCAT+CGG 0.527283 6.2:-32429199 None:intergenic
CAATATATTCGTGCTTCCGA+TGG 0.530199 6.2:+32429183 MS.gene03360:CDS
ATTCTCAGCATCATCGCTGC+CGG 0.530249 6.2:+32428153 MS.gene03360:CDS
ACCATACTCCTTTGAAGTAG+AGG 0.534276 6.2:-32429065 None:intergenic
GTTAAAGAAGTTATTTCACC+AGG 0.535374 6.2:+32429003 MS.gene03360:CDS
TTCATCACAGTGAATGAAGA+AGG 0.539733 6.2:+32429540 MS.gene03360:CDS
GAAATCAACAGAAGCCAAGT+TGG 0.540884 6.2:-32428391 None:intergenic
TATCCTTTCCGTCGTACTCA+CGG 0.544427 6.2:+32428257 MS.gene03360:CDS
CCATACTCCTTTGAAGTAGA+GGG 0.548242 6.2:-32429064 None:intergenic
GCTAATGCCCTCTACTTCAA+AGG 0.549267 6.2:+32429057 MS.gene03360:CDS
TGTTTGAAGGTAGGTTGAAG+AGG 0.552542 6.2:-32428345 None:intergenic
TTGTGTGGTACCCTCAGAGC+CGG 0.552567 6.2:-32428172 None:intergenic
CCAAATGAAACATTGAACCT+TGG 0.554304 6.2:-32429390 None:intergenic
TTCTGTTGATTTCCAGAACA+AGG 0.555158 6.2:+32428401 MS.gene03360:CDS
ACAAAGTCTAGTCGAGGACG+AGG 0.560984 6.2:-32429612 None:intergenic
TCCTTCATGCTGGTCATGAA+AGG 0.565992 6.2:-32429159 None:intergenic
AAAGGATTCGCAAAAGGCAT+AGG 0.566802 6.2:-32429583 None:intergenic
TCCAACAAAGAGGATTGCTC+CGG 0.578306 6.2:-32429676 None:intergenic
AATATATTGATCCTTCATGC+TGG 0.580830 6.2:-32429169 None:intergenic
TTGTTCAATCCAAACACTAT+CGG 0.587103 6.2:-32428316 None:intergenic
GTGAAATAACTTCTTTAACA+AGG 0.594053 6.2:-32428999 None:intergenic
GGTCCGTGAGTACGACGGAA+AGG 0.596845 6.2:-32428260 None:intergenic
AGAAGTTATTTCACCAGGGG+CGG 0.597921 6.2:+32429008 MS.gene03360:CDS
GATTGATGGATTTAGAGTGG+AGG 0.601249 6.2:-32428212 None:intergenic
TCGAGGACGAGGAGGACCAA+AGG 0.601474 6.2:-32429601 None:intergenic
TAGTGTAATTACGCAGCAAG+AGG 0.609538 6.2:-32429711 None:intergenic
ACGGACCCTTATCTCACCGG+AGG 0.616547 6.2:+32428276 MS.gene03360:CDS
GGAAAGGATATGAGACGCAA+AGG 0.618163 6.2:-32428244 None:intergenic
CGAGCACCTGTCCAACAAAG+AGG 0.619877 6.2:-32429686 None:intergenic
TATGTTGAAGGAGTTAGGAG+TGG 0.621267 6.2:+32429428 MS.gene03360:CDS
TAAAGAAGTTATTTCACCAG+GGG 0.624921 6.2:+32429005 MS.gene03360:CDS
CTCACGGACCCTTATCTCAC+CGG 0.626020 6.2:+32428273 MS.gene03360:CDS
GTCGAGAAGTTGTTGTTGTG+TGG 0.627329 6.2:-32428187 None:intergenic
AGAAGGCACTGAAGCTGCTG+CGG 0.627362 6.2:+32429557 MS.gene03360:CDS
AAACACTATCGGCAAAAGAG+AGG 0.630018 6.2:-32428305 None:intergenic
TGATTGAGCTGCCATTGAGA+AGG 0.630337 6.2:-32429131 None:intergenic
TTAAAGAAGTTATTTCACCA+GGG 0.632918 6.2:+32429004 MS.gene03360:CDS
AGAATAATTTGAATCGAGAG+AGG 0.633850 6.2:-32428135 None:intergenic
TAATTAGAAATAAGAATGGG+TGG 0.638436 6.2:-32429641 None:intergenic
ATAAGGGTCCGTGAGTACGA+CGG 0.655078 6.2:-32428265 None:intergenic
AGTGTAATTACGCAGCAAGA+GGG 0.656663 6.2:-32429710 None:intergenic
GGTTGATCATTGATTCACGA+CGG 0.660933 6.2:-32428041 None:intergenic
TAGGTGACTTCAGAATTCCA+AGG 0.662092 6.2:+32429373 MS.gene03360:CDS
CGGACCCTTATCTCACCGGA+GGG 0.662431 6.2:+32428277 MS.gene03360:CDS
TCTTCTCAACCAAAGCTGAG+AGG 0.678042 6.2:-32429293 None:intergenic
TCAGCTACAAAGTCTAGTCG+AGG 0.689387 6.2:-32429618 None:intergenic
AAGTCTAGTCGAGGACGAGG+AGG 0.692530 6.2:-32429609 None:intergenic
CTATCGGCAAAAGAGAGGCG+AGG 0.702993 6.2:-32428300 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATATGATTTTAT+AGG + chr6.2:32428924-32428943 MS.gene03360:intron 10.0%
!! CTTTAATTAGAAATAAGAAT+GGG - chr6.2:32429647-32429666 None:intergenic 15.0%
!! TCTTTAATTAGAAATAAGAA+TGG - chr6.2:32429648-32429667 None:intergenic 15.0%
!!! TATTTCTAATTAAAGAAGAT+TGG + chr6.2:32429652-32429671 MS.gene03360:CDS 15.0%
!!! TTTAAGTACTTTAAAACCAT+CGG - chr6.2:32429202-32429221 None:intergenic 20.0%
! ATGCATTTGAATAACATTCA+TGG - chr6.2:32428705-32428724 None:intergenic 25.0%
! CTTAAACTTCCTTATAAACT+AGG + chr6.2:32429216-32429235 MS.gene03360:CDS 25.0%
! GACCAATGAAGTTAATTTAT+GGG + chr6.2:32428957-32428976 MS.gene03360:CDS 25.0%
! GTAAAGGTTATCTCTAAATT+AGG - chr6.2:32428507-32428526 None:intergenic 25.0%
! GTGAAATAACTTCTTTAACA+AGG - chr6.2:32429002-32429021 None:intergenic 25.0%
! GTGAAGTTAAATCCATTATA+GGG - chr6.2:32428457-32428476 None:intergenic 25.0%
! TAAAGTACATAGAGAATTGA+CGG - chr6.2:32429251-32429270 None:intergenic 25.0%
! TAATTAGAAATAAGAATGGG+TGG - chr6.2:32429644-32429663 None:intergenic 25.0%
! TGACCAATGAAGTTAATTTA+TGG + chr6.2:32428956-32428975 MS.gene03360:CDS 25.0%
! TGTGAAGTTAAATCCATTAT+AGG - chr6.2:32428458-32428477 None:intergenic 25.0%
! TTCAGGTCATTAAATGTATA+AGG + chr6.2:32428627-32428646 MS.gene03360:intron 25.0%
! TTGTTTAAAGAAGAGATGTT+TGG - chr6.2:32428091-32428110 None:intergenic 25.0%
!! GAAAGACTTGTGAAATATTT+TGG - chr6.2:32429523-32429542 None:intergenic 25.0%
!! TCTATTTCTCAAGTTAAAGT+AGG + chr6.2:32429354-32429373 MS.gene03360:CDS 25.0%
!! TTAAAGAAGTTATTTCACCA+GGG + chr6.2:32429004-32429023 MS.gene03360:CDS 25.0%
!! TTTCTAGCATTCAACTTATT+AGG + chr6.2:32428790-32428809 MS.gene03360:intron 25.0%
AATATATTGATCCTTCATGC+TGG - chr6.2:32429172-32429191 None:intergenic 30.0%
AGAATAATTTGAATCGAGAG+AGG - chr6.2:32428138-32428157 None:intergenic 30.0%
AGCCCATAAATTAACTTCAT+TGG - chr6.2:32428962-32428981 None:intergenic 30.0%
CAAGGTTCAATGTTTCATTT+GGG + chr6.2:32429391-32429410 MS.gene03360:CDS 30.0%
CTAATTAAAGAAGATTGGAC+CGG + chr6.2:32429657-32429676 MS.gene03360:CDS 30.0%
TACGATCAGAAATCAATGAA+GGG - chr6.2:32428603-32428622 None:intergenic 30.0%
TGAAACTTCTGATATGTTGA+AGG + chr6.2:32429416-32429435 MS.gene03360:CDS 30.0%
TTGTTCAATCCAAACACTAT+CGG - chr6.2:32428319-32428338 None:intergenic 30.0%
! AGATGACAGAATTTGTTTGA+AGG - chr6.2:32428361-32428380 None:intergenic 30.0%
! GTTAAAGAAGTTATTTCACC+AGG + chr6.2:32429003-32429022 MS.gene03360:CDS 30.0%
! TAAAGAAGTTATTTCACCAG+GGG + chr6.2:32429005-32429024 MS.gene03360:CDS 30.0%
! TATGATTTTCACCTTCTCAA+TGG + chr6.2:32429120-32429139 MS.gene03360:CDS 30.0%
!! CTTAGTCTTGAGTTACAAAA+AGG + chr6.2:32428737-32428756 MS.gene03360:intron 30.0%
!!! ATACTTTTTTTGTCAACCCT+CGG - chr6.2:32428573-32428592 None:intergenic 30.0%
AACTCAAGACTAAGACGTAT+AGG - chr6.2:32428731-32428750 None:intergenic 35.0%
AATAGAAACGTACCTTGTTC+TGG - chr6.2:32428416-32428435 None:intergenic 35.0%
ACGATCAGAAATCAATGAAG+GGG - chr6.2:32428602-32428621 None:intergenic 35.0%
ACTCAAGACTAAGACGTATA+GGG - chr6.2:32428730-32428749 None:intergenic 35.0%
ATCTGTTTACAAAGCCAACT+TGG + chr6.2:32428377-32428396 MS.gene03360:CDS 35.0%
ATTTCTGATCGTACAACTTC+AGG + chr6.2:32428610-32428629 MS.gene03360:intron 35.0%
CCAAATGAAACATTGAACCT+TGG - chr6.2:32429393-32429412 None:intergenic 35.0%
CCAAGGTTCAATGTTTCATT+TGG + chr6.2:32429390-32429409 MS.gene03360:CDS 35.0%
GTACGATCAGAAATCAATGA+AGG - chr6.2:32428604-32428623 None:intergenic 35.0%
GTTAAATCCATTATAGGGCA+TGG - chr6.2:32428452-32428471 None:intergenic 35.0%
TCATCTTGGCCTAGTTTATA+AGG - chr6.2:32429228-32429247 None:intergenic 35.0%
TCTGATATGTTGAAGGAGTT+AGG + chr6.2:32429423-32429442 MS.gene03360:CDS 35.0%
TGGGCTGAAAAAGAAACAAA+TGG + chr6.2:32428976-32428995 MS.gene03360:CDS 35.0%
TTCATCACAGTGAATGAAGA+AGG + chr6.2:32429540-32429559 MS.gene03360:CDS 35.0%
! AAAAATGGTTGACTCTGTTG+AGG + chr6.2:32429479-32429498 MS.gene03360:CDS 35.0%
! GACAGAATTTGTTTGAAGGT+AGG - chr6.2:32428357-32428376 None:intergenic 35.0%
!! AAAGGAGTTGAGTTGATTGA+TGG - chr6.2:32428229-32428248 None:intergenic 35.0%
!! GTTGATTGATGGATTTAGAG+TGG - chr6.2:32428218-32428237 None:intergenic 35.0%
!! TGAGTTCTTTTTCACAAGTG+TGG - chr6.2:32428866-32428885 None:intergenic 35.0%
!! TTCTGTTGATTTCCAGAACA+AGG + chr6.2:32428401-32428420 MS.gene03360:CDS 35.0%
!! TTTTGAGTGAAACGTTGGTT+TGG - chr6.2:32428065-32428084 None:intergenic 35.0%
AAACACTATCGGCAAAAGAG+AGG - chr6.2:32428308-32428327 None:intergenic 40.0%
AGAAAAGGGGCTTAGTAATC+CGG - chr6.2:32428542-32428561 None:intergenic 40.0%
ATTCTTCCAGATGCGAAAGA+TGG + chr6.2:32429270-32429289 MS.gene03360:CDS 40.0%
CAATATATTCGTGCTTCCGA+TGG + chr6.2:32429183-32429202 MS.gene03360:CDS 40.0%
CCTCGGATTACTAGAGAAAA+GGG - chr6.2:32428556-32428575 None:intergenic 40.0%
CCTTTACTTACCTTGAACTC+CGG + chr6.2:32428520-32428539 MS.gene03360:intron 40.0%
CTCGGATTACTAGAGAAAAG+GGG - chr6.2:32428555-32428574 None:intergenic 40.0%
GAAATCAACAGAAGCCAAGT+TGG - chr6.2:32428394-32428413 None:intergenic 40.0%
TAGAGAATTGACGGTCATCT+TGG - chr6.2:32429242-32429261 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG + chr6.2:32429373-32429392 MS.gene03360:CDS 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + chr6.2:32429428-32429447 MS.gene03360:CDS 40.0%
! AAAGGATTCGCAAAAGGCAT+AGG - chr6.2:32429586-32429605 None:intergenic 40.0%
! CCTTTTCTCTAGTAATCCGA+GGG + chr6.2:32428554-32428573 MS.gene03360:intron 40.0%
! TATGCCTTTTGCGAATCCTT+TGG + chr6.2:32429585-32429604 MS.gene03360:CDS 40.0%
! TCTCTTTTGCCGATAGTGTT+TGG + chr6.2:32428307-32428326 MS.gene03360:CDS 40.0%
! TGTTTGAAGGTAGGTTGAAG+AGG - chr6.2:32428348-32428367 None:intergenic 40.0%
!! AACCATTTTTGTCAGACCTC+CGG - chr6.2:32429469-32429488 None:intergenic 40.0%
!! ACCATACTCCTTTGAAGTAG+AGG - chr6.2:32429068-32429087 None:intergenic 40.0%
!! CCATACTCCTTTGAAGTAGA+GGG - chr6.2:32429067-32429086 None:intergenic 40.0%
!! GATTGATGGATTTAGAGTGG+AGG - chr6.2:32428215-32428234 None:intergenic 40.0%
!! GGTTGATCATTGATTCACGA+CGG - chr6.2:32428044-32428063 None:intergenic 40.0%
AGCAATCCTCTTTGTTGGAC+AGG + chr6.2:32429680-32429699 MS.gene03360:CDS 45.0%
AGGACCAAAGGATTCGCAAA+AGG - chr6.2:32429592-32429611 None:intergenic 45.0%
CCACAATCCATGCCCTATAA+TGG + chr6.2:32428442-32428461 MS.gene03360:intron 45.0%
CCCTCGGATTACTAGAGAAA+AGG - chr6.2:32428557-32428576 None:intergenic 45.0%
CCCTCTACTTCAAAGGAGTA+TGG + chr6.2:32429064-32429083 MS.gene03360:CDS 45.0%
CCGGAGTTCAAGGTAAGTAA+AGG - chr6.2:32428523-32428542 None:intergenic 45.0%
GCTAATGCCCTCTACTTCAA+AGG + chr6.2:32429057-32429076 MS.gene03360:CDS 45.0%
GCTTAGTAATCCGGAGTTCA+AGG - chr6.2:32428533-32428552 None:intergenic 45.0%
GGAAAGGATATGAGACGCAA+AGG - chr6.2:32428247-32428266 None:intergenic 45.0%
TATCCTTTCCGTCGTACTCA+CGG + chr6.2:32428257-32428276 MS.gene03360:CDS 45.0%
TCAGCTACAAAGTCTAGTCG+AGG - chr6.2:32429621-32429640 None:intergenic 45.0%
TCCAACAAAGAGGATTGCTC+CGG - chr6.2:32429679-32429698 None:intergenic 45.0%
TCCTTCATGCTGGTCATGAA+AGG - chr6.2:32429162-32429181 None:intergenic 45.0%
TCCTTTCATGACCAGCATGA+AGG + chr6.2:32429158-32429177 MS.gene03360:CDS 45.0%
TCTCAATGGCAGCTCAATCA+AGG + chr6.2:32429134-32429153 MS.gene03360:CDS 45.0%
TCTTCTCAACCAAAGCTGAG+AGG - chr6.2:32429296-32429315 None:intergenic 45.0%
TGATTGAGCTGCCATTGAGA+AGG - chr6.2:32429134-32429153 None:intergenic 45.0%
! AGAAGTTATTTCACCAGGGG+CGG + chr6.2:32429008-32429027 MS.gene03360:CDS 45.0%
! CCATTATAGGGCATGGATTG+TGG - chr6.2:32428445-32428464 None:intergenic 45.0%
! CCCTTTTCTCTAGTAATCCG+AGG + chr6.2:32428553-32428572 MS.gene03360:intron 45.0%
! GTCGAGAAGTTGTTGTTGTG+TGG - chr6.2:32428190-32428209 None:intergenic 45.0%
!! ACCATTTTTGTCAGACCTCC+GGG - chr6.2:32429468-32429487 None:intergenic 45.0%
!! CTTTTTCACAAGTGTGGCAG+TGG - chr6.2:32428860-32428879 None:intergenic 45.0%
!! GGCGATTTTGAGTGAAACGT+TGG - chr6.2:32428070-32428089 None:intergenic 45.0%
!! GTGGTTTTACCTTTCTCTCC+CGG + chr6.2:32429447-32429466 MS.gene03360:CDS 45.0%
ACAAAGTCTAGTCGAGGACG+AGG - chr6.2:32429615-32429634 None:intergenic 50.0%
ACCGGAGCAATCCTCTTTGT+TGG + chr6.2:32429675-32429694 MS.gene03360:CDS 50.0%
ATAAGGGTCCGTGAGTACGA+CGG - chr6.2:32428268-32428287 None:intergenic 50.0%
ATTCTCAGCATCATCGCTGC+CGG + chr6.2:32428153-32428172 MS.gene03360:CDS 50.0%
GAAAGATGGCCTCTCAGCTT+TGG + chr6.2:32429284-32429303 MS.gene03360:CDS 50.0%
TCCCGGAGGTCTGACAAAAA+TGG + chr6.2:32429464-32429483 MS.gene03360:CDS 50.0%
! GTTTTACCTTTCTCTCCCGG+AGG + chr6.2:32429450-32429469 MS.gene03360:CDS 50.0%
AAGTCTAGTCGAGGACGAGG+AGG - chr6.2:32429612-32429631 None:intergenic 55.0%
CGAGCACCTGTCCAACAAAG+AGG - chr6.2:32429689-32429708 None:intergenic 55.0%
CTATCGGCAAAAGAGAGGCG+AGG - chr6.2:32428303-32428322 None:intergenic 55.0%
CTCACGGACCCTTATCTCAC+CGG + chr6.2:32428273-32428292 MS.gene03360:CDS 55.0%
GAGAGGCCATCTTTCGCATC+TGG - chr6.2:32429279-32429298 None:intergenic 55.0%
TTGTGTGGTACCCTCAGAGC+CGG - chr6.2:32428175-32428194 None:intergenic 55.0%
!! AGAAGGCACTGAAGCTGCTG+CGG + chr6.2:32429557-32429576 MS.gene03360:CDS 55.0%
AAAAGAGAGGCGAGGCCCTC+CGG - chr6.2:32428295-32428314 None:intergenic 60.0%
ACGGACCCTTATCTCACCGG+AGG + chr6.2:32428276-32428295 MS.gene03360:CDS 60.0%
CGGACCCTTATCTCACCGGA+GGG + chr6.2:32428277-32428296 MS.gene03360:CDS 60.0%
GAGGCCCTCCGGTGAGATAA+GGG - chr6.2:32428284-32428303 None:intergenic 60.0%
GGTCCGTGAGTACGACGGAA+AGG - chr6.2:32428263-32428282 None:intergenic 60.0%
GTCAGACCTCCGGGAGAGAA+AGG - chr6.2:32429459-32429478 None:intergenic 60.0%
GTTAAGCTGTTGACCGCCCC+TGG - chr6.2:32429024-32429043 None:intergenic 60.0%
TCGAGGACGAGGAGGACCAA+AGG - chr6.2:32429604-32429623 None:intergenic 60.0%
!! ATCATCGCTGCCGGCTCTGA+GGG + chr6.2:32428162-32428181 MS.gene03360:CDS 60.0%
CGAGGCCCTCCGGTGAGATA+AGG - chr6.2:32428285-32428304 None:intergenic 65.0%
!! CATCATCGCTGCCGGCTCTG+AGG + chr6.2:32428161-32428180 MS.gene03360:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 32428033 32429725 32428033 ID=MS.gene03360
chr6.2 mRNA 32428033 32429725 32428033 ID=MS.gene03360.t1;Parent=MS.gene03360
chr6.2 exon 32428033 32428422 32428033 ID=MS.gene03360.t1.exon1;Parent=MS.gene03360.t1
chr6.2 CDS 32428033 32428422 32428033 ID=cds.MS.gene03360.t1;Parent=MS.gene03360.t1
chr6.2 exon 32428946 32429725 32428946 ID=MS.gene03360.t1.exon2;Parent=MS.gene03360.t1
chr6.2 CDS 32428946 32429725 32428946 ID=cds.MS.gene03360.t1;Parent=MS.gene03360.t1
Gene Sequence

>MS.gene03360

ATGGAGTTCCGTCGTGAATCAATGATCAACCAAACCAACGTTTCACTCAAAATCGCCAAACATCTCTTCTTTAAACAATCTAACAGCAACATTGTGTTTTCACCTCTCTCGATTCAAATTATTCTCAGCATCATCGCTGCCGGCTCTGAGGGTACCACACAACAACAACTTCTCGACTTCCTCCACTCTAAATCCATCAATCAACTCAACTCCTTTGCGTCTCATATCCTTTCCGTCGTACTCACGGACCCTTATCTCACCGGAGGGCCTCGCCTCTCTTTTGCCGATAGTGTTTGGATTGAACAATCACTTCCTCTTCAACCTACCTTCAAACAAATTCTGTCATCTGTTTACAAAGCCAACTTGGCTTCTGTTGATTTCCAGAACAAGGTACGTTTCTATTTTTTCACCACAATCCATGCCCTATAATGGATTTAACTTCACAAACAATTAGTTTATTGTATTTCATAACCTAATTTAGAGATAACCTTTACTTACCTTGAACTCCGGATTACTAAGCCCCTTTTCTCTAGTAATCCGAGGGTTGACAAAAAAAGTATAGATAACCCCTTCATTGATTTCTGATCGTACAACTTCAGGTCATTAAATGTATAAGGCTAATAATTCACTCATTTAACACACACACACTTTAAATTGATTAAAGCAATTCCATGAATGTTATTCAAATGCATCACCCTATACGTCTTAGTCTTGAGTTACAAAAAGGAATGCAAAACAACATTTTTGTCATTATTATTTTCTAGCATTCAACTTATTAGGCAACATAACGATTGATAATTAGACTAACAAAAAGTTAAATTGTTCCACTGCCACACTTGTGAAAAAGAACTCAACTTATCTATTTGCAATTCTTATTTTTTATTTTTTTTTAAAATTTGATATGATTTTATAGGCTGTTGAAGTGACCAATGAAGTTAATTTATGGGCTGAAAAAGAAACAAATGGCCTTGTTAAAGAAGTTATTTCACCAGGGGCGGTCAACAGCTTAACGAGACTCATCTTTGCTAATGCCCTCTACTTCAAAGGAGTATGGTCTAAGAATTTTGATGCTTCAAAAACGAAAGATTATGATTTTCACCTTCTCAATGGCAGCTCAATCAAGGTTCCTTTCATGACCAGCATGAAGGATCAATATATTCGTGCTTCCGATGGTTTTAAAGTACTTAAACTTCCTTATAAACTAGGCCAAGATGACCGTCAATTCTCTATGTACTTTATTCTTCCAGATGCGAAAGATGGCCTCTCAGCTTTGGTTGAGAAGATGACTTCTGAATCTGAGTCACTACACGACAAGCTTCATTCTATTTCTCAAGTTAAAGTAGGTGACTTCAGAATTCCAAGGTTCAATGTTTCATTTGGGTTTGAAACTTCTGATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCTCTCCCGGAGGTCTGACAAAAATGGTTGACTCTGTTGAGGATCAAAAGCTTTATGTTTCCAAAATATTTCACAAGTCTTTCATCACAGTGAATGAAGAAGGCACTGAAGCTGCTGCGGTAACCTATGCCTTTTGCGAATCCTTTGGTCCTCCTCGTCCTCGACTAGACTTTGTAGCTGACCACCCATTCTTATTTCTAATTAAAGAAGATTGGACCGGAGCAATCCTCTTTGTTGGACAGGTGCTCGACCCTCTTGCTGCGTAA
Protein sequence

>MS.gene03360.t1

MEFRRESMINQTNVSLKIAKHLFFKQSNSNIVFSPLSIQIILSIIAAGSEGTTQQQLLDFLHSKSINQLNSFASHILSVVLTDPYLTGGPRLSFADSVWIEQSLPLQPTFKQILSSVYKANLASVDFQNKAVEVTNEVNLWAEKETNGLVKEVISPGAVNSLTRLIFANALYFKGVWSKNFDASKTKDYDFHLLNGSSIKVPFMTSMKDQYIRASDGFKVLKLPYKLGQDDRQFSMYFILPDAKDGLSALVEKMTSESESLHDKLHSISQVKVGDFRIPRFNVSFGFETSDMLKELGVVLPFSPGGLTKMVDSVEDQKLYVSKIFHKSFITVNEEGTEAAAVTYAFCESFGPPRPRLDFVADHPFLFLIKEDWTGAILFVGQVLDPLAA