Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033616.t1 | AES80594.1 | 75.2 | 262 | 59 | 4 | 1 | 261 | 1 | 257 | 1.80E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033616.t1 | F4HQ23 | 32.3 | 260 | 144 | 10 | 8 | 254 | 4 | 244 | 2.7e-26 | 120.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033616.t1 | G7KV63 | 75.2 | 262 | 59 | 4 | 1 | 261 | 1 | 257 | 1.3e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047363 | MS.gene033616 | PPI |
| MS.gene002507 | MS.gene033616 | PPI |
| MS.gene01481 | MS.gene033616 | PPI |
| MS.gene033616 | MS.gene004177 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033616.t1 | MTR_7g082540 | 75.191 | 262 | 59 | 4 | 1 | 261 | 1 | 257 | 2.98e-138 | 389 |
| MS.gene033616.t1 | MTR_7g082390 | 75.391 | 256 | 58 | 4 | 1 | 255 | 1 | 252 | 7.45e-136 | 383 |
| MS.gene033616.t1 | MTR_7g082533 | 34.956 | 226 | 127 | 6 | 35 | 243 | 36 | 258 | 1.75e-36 | 131 |
| MS.gene033616.t1 | MTR_7g082537 | 30.303 | 264 | 157 | 13 | 11 | 259 | 12 | 263 | 1.86e-28 | 109 |
| MS.gene033616.t1 | MTR_7g082530 | 31.878 | 229 | 145 | 7 | 25 | 244 | 27 | 253 | 4.19e-25 | 104 |
| MS.gene033616.t1 | MTR_7g082530 | 31.878 | 229 | 145 | 7 | 25 | 244 | 27 | 253 | 4.38e-25 | 104 |
| MS.gene033616.t1 | MTR_7g082460 | 29.555 | 247 | 142 | 10 | 17 | 243 | 21 | 255 | 1.45e-24 | 102 |
| MS.gene033616.t1 | MTR_6g082940 | 29.119 | 261 | 163 | 10 | 1 | 242 | 1 | 258 | 3.49e-24 | 99.8 |
| MS.gene033616.t1 | MTR_6g082920 | 29.119 | 261 | 163 | 10 | 1 | 242 | 1 | 258 | 3.49e-24 | 99.8 |
| MS.gene033616.t1 | MTR_8g104520 | 32.653 | 245 | 139 | 9 | 16 | 239 | 5 | 244 | 3.70e-24 | 101 |
| MS.gene033616.t1 | MTR_7g082470 | 27.612 | 268 | 148 | 11 | 19 | 254 | 1 | 254 | 3.64e-22 | 95.9 |
| MS.gene033616.t1 | MTR_6g082820 | 29.084 | 251 | 153 | 10 | 11 | 242 | 14 | 258 | 7.85e-22 | 92.8 |
| MS.gene033616.t1 | MTR_6g083000 | 30.493 | 223 | 136 | 9 | 39 | 245 | 43 | 262 | 1.97e-20 | 89.4 |
| MS.gene033616.t1 | MTR_1g115485 | 28.137 | 263 | 160 | 12 | 17 | 255 | 8 | 265 | 3.47e-20 | 90.1 |
| MS.gene033616.t1 | MTR_7g082510 | 29.583 | 240 | 129 | 13 | 17 | 241 | 21 | 235 | 1.67e-17 | 82.0 |
| MS.gene033616.t1 | MTR_6g082990 | 29.577 | 213 | 137 | 9 | 41 | 243 | 35 | 244 | 7.87e-17 | 78.2 |
| MS.gene033616.t1 | MTR_6g082980 | 33.766 | 154 | 88 | 6 | 16 | 158 | 17 | 167 | 8.28e-16 | 75.5 |
| MS.gene033616.t1 | MTR_7g082430 | 28.500 | 200 | 101 | 9 | 35 | 227 | 41 | 205 | 3.13e-14 | 72.4 |
| MS.gene033616.t1 | MTR_6g044830 | 31.683 | 202 | 120 | 11 | 39 | 226 | 4 | 201 | 1.35e-13 | 70.5 |
| MS.gene033616.t1 | MTR_6g083020 | 27.119 | 236 | 154 | 11 | 17 | 243 | 24 | 250 | 4.17e-13 | 69.3 |
| MS.gene033616.t1 | MTR_7g082500 | 33.898 | 118 | 66 | 5 | 34 | 140 | 10 | 126 | 5.69e-13 | 65.5 |
| MS.gene033616.t1 | MTR_6g083010 | 28.070 | 228 | 130 | 9 | 13 | 219 | 23 | 237 | 5.74e-13 | 67.8 |
| MS.gene033616.t1 | MTR_6g083760 | 26.482 | 253 | 157 | 13 | 14 | 246 | 8 | 251 | 5.42e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033616.t1 | AT1G66880 | 33.498 | 203 | 119 | 7 | 35 | 233 | 33 | 223 | 1.10e-25 | 106 |
| MS.gene033616.t1 | AT1G66930 | 32.900 | 231 | 125 | 10 | 35 | 254 | 33 | 244 | 1.23e-25 | 106 |
| MS.gene033616.t1 | AT1G66930 | 27.016 | 248 | 147 | 9 | 26 | 253 | 243 | 476 | 2.32e-14 | 73.2 |
| MS.gene033616.t1 | AT1G66880 | 33.498 | 203 | 119 | 7 | 35 | 233 | 33 | 223 | 1.36e-25 | 105 |
| MS.gene033616.t1 | AT1G66880 | 25.112 | 223 | 141 | 9 | 35 | 238 | 252 | 467 | 2.20e-13 | 70.1 |
| MS.gene033616.t1 | AT1G66880 | 33.166 | 199 | 117 | 7 | 39 | 233 | 416 | 602 | 2.77e-24 | 102 |
| MS.gene033616.t1 | AT1G66880 | 28.351 | 194 | 125 | 6 | 41 | 231 | 26 | 208 | 1.68e-14 | 73.6 |
| MS.gene033616.t1 | AT1G66880 | 25.112 | 223 | 141 | 9 | 35 | 238 | 631 | 846 | 2.14e-13 | 70.5 |
| MS.gene033616.t1 | AT1G67000 | 33.457 | 269 | 138 | 13 | 5 | 262 | 3 | 241 | 9.97e-24 | 100 |
| MS.gene033616.t1 | AT1G67000 | 29.719 | 249 | 136 | 11 | 25 | 247 | 241 | 476 | 4.11e-18 | 84.3 |
| MS.gene033616.t1 | AT5G38260 | 29.508 | 244 | 154 | 9 | 14 | 242 | 12 | 252 | 2.26e-23 | 99.4 |
| MS.gene033616.t1 | AT5G38210 | 30.769 | 221 | 136 | 8 | 16 | 229 | 16 | 226 | 3.06e-23 | 99.0 |
| MS.gene033616.t1 | AT1G66920 | 32.338 | 201 | 121 | 5 | 35 | 231 | 33 | 222 | 1.46e-21 | 94.0 |
| MS.gene033616.t1 | AT1G66920 | 32.338 | 201 | 121 | 5 | 35 | 231 | 33 | 222 | 1.56e-21 | 94.0 |
| MS.gene033616.t1 | AT1G66920 | 32.338 | 201 | 121 | 5 | 35 | 231 | 33 | 222 | 1.78e-21 | 94.0 |
| MS.gene033616.t1 | AT5G38210 | 27.869 | 244 | 149 | 10 | 18 | 242 | 16 | 251 | 1.55e-20 | 91.3 |
| MS.gene033616.t1 | AT1G66940 | 31.250 | 272 | 130 | 13 | 8 | 241 | 4 | 256 | 2.72e-20 | 88.6 |
| MS.gene033616.t1 | AT1G66940 | 31.250 | 272 | 130 | 13 | 8 | 241 | 4 | 256 | 2.72e-20 | 88.6 |
| MS.gene033616.t1 | AT1G66940 | 31.203 | 266 | 138 | 12 | 8 | 241 | 4 | 256 | 3.23e-20 | 88.6 |
| MS.gene033616.t1 | AT5G38210 | 27.027 | 222 | 140 | 8 | 35 | 242 | 20 | 233 | 4.31e-20 | 89.7 |
| MS.gene033616.t1 | AT1G66940 | 31.203 | 266 | 138 | 12 | 8 | 241 | 4 | 256 | 8.02e-20 | 87.8 |
| MS.gene033616.t1 | AT5G38250 | 30.702 | 228 | 127 | 11 | 25 | 237 | 28 | 239 | 2.95e-16 | 78.6 |
| MS.gene033616.t1 | AT1G66910 | 28.000 | 250 | 146 | 10 | 16 | 238 | 16 | 258 | 3.33e-16 | 78.6 |
| MS.gene033616.t1 | AT1G66910 | 28.000 | 250 | 146 | 10 | 16 | 238 | 16 | 258 | 4.59e-16 | 78.2 |
| MS.gene033616.t1 | AT5G38240 | 33.679 | 193 | 106 | 9 | 26 | 208 | 26 | 206 | 9.04e-14 | 71.2 |
| MS.gene033616.t1 | AT5G38240 | 33.679 | 193 | 106 | 9 | 26 | 208 | 26 | 206 | 9.55e-14 | 71.2 |
| MS.gene033616.t1 | AT1G66930 | 26.432 | 227 | 139 | 8 | 26 | 232 | 62 | 280 | 3.66e-11 | 63.5 |
| MS.gene033616.t1 | AT1G66930 | 26.432 | 227 | 139 | 8 | 26 | 232 | 62 | 280 | 4.16e-11 | 63.2 |
| MS.gene033616.t1 | AT1G18390 | 26.693 | 251 | 144 | 12 | 25 | 252 | 18 | 251 | 7.84e-11 | 62.4 |
Find 53 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACCGACCTCTTTGTTTA+TGG | 0.138942 | 7.4:+24318495 | MS.gene033616:CDS |
| CCAGAACAACCGTGCTTTCT+TGG | 0.164666 | 7.4:-24318671 | None:intergenic |
| ATTCTCATAACATGTAAATT+AGG | 0.184326 | 7.4:-24318411 | None:intergenic |
| ACTTGGTTTGGTTCTAATAT+TGG | 0.259610 | 7.4:+24318630 | MS.gene033616:CDS |
| TGTGGAACTATAAAACAAAT+TGG | 0.275223 | 7.4:+24318264 | MS.gene033616:CDS |
| GGATTATGAATTGAAGAATA+TGG | 0.300665 | 7.4:-24318176 | None:intergenic |
| CCAAGAAAGCACGGTTGTTC+TGG | 0.326952 | 7.4:+24318671 | MS.gene033616:CDS |
| TGAAGTCAAGTATCTGGTTT+TGG | 0.330615 | 7.4:+24318380 | MS.gene033616:CDS |
| AAAGGGTGGCCACACTCTTT+TGG | 0.336772 | 7.4:-24318312 | None:intergenic |
| TTCTCATAACATGTAAATTA+GGG | 0.352436 | 7.4:-24318410 | None:intergenic |
| AATCAATGAAGTCAAGTATC+TGG | 0.353721 | 7.4:+24318374 | MS.gene033616:CDS |
| CTGATGAATATGTTTATACT+TGG | 0.407475 | 7.4:+24318613 | MS.gene033616:CDS |
| TTCATTGATTGTTATGTAGC+TGG | 0.420003 | 7.4:-24318361 | None:intergenic |
| GAGCTTCATTAGAACAAGAT+TGG | 0.423731 | 7.4:-24318866 | None:intergenic |
| TGCAATTGATATTCAACAAA+GGG | 0.426809 | 7.4:-24318329 | None:intergenic |
| GAATATGTTTATACTTGGTT+TGG | 0.429857 | 7.4:+24318618 | MS.gene033616:CDS |
| AATTGAAGAATATGGAAAGT+AGG | 0.454150 | 7.4:-24318168 | None:intergenic |
| ATTGAAGAATATGGAAAGTA+GGG | 0.482727 | 7.4:-24318167 | None:intergenic |
| TTCTTGCAAATAGTCCTCTC+TGG | 0.490100 | 7.4:-24318436 | None:intergenic |
| TCATCAGAAGAACCATTTGA+AGG | 0.497784 | 7.4:-24318597 | None:intergenic |
| AGATTGGTCTCCACAGTAGC+AGG | 0.507693 | 7.4:-24318850 | None:intergenic |
| CATAACATGTAAATTAGGGC+TGG | 0.521705 | 7.4:-24318406 | None:intergenic |
| TCATATTTGAGCTCCGATGA+AGG | 0.522630 | 7.4:+24318222 | MS.gene033616:CDS |
| GGTGGAGATTGCTGAGACTG+TGG | 0.523150 | 7.4:-24318888 | None:intergenic |
| TGTGAGAATCTATTTAATTG+TGG | 0.523585 | 7.4:+24318246 | MS.gene033616:CDS |
| AAGCAAACAACCTGCTACTG+TGG | 0.532581 | 7.4:+24318840 | MS.gene033616:CDS |
| TAGATTCTCACAACCTTCAT+CGG | 0.538981 | 7.4:-24318235 | None:intergenic |
| GGTCGATCCCCTCCCCAGAA+AGG | 0.542122 | 7.4:-24318291 | None:intergenic |
| GGCGAAGGGAAAGTAATTGA+AGG | 0.551078 | 7.4:-24318555 | None:intergenic |
| TCATCGGAGCTCAAATATGA+AGG | 0.558393 | 7.4:-24318219 | None:intergenic |
| TTTGTGGTGAGATGGATAGC+TGG | 0.564260 | 7.4:+24318756 | MS.gene033616:CDS |
| ACTTTAGACATACCTGGAGG+TGG | 0.566661 | 7.4:-24318906 | None:intergenic |
| TGCAATCAGAGATGGATTTG+TGG | 0.566962 | 7.4:+24318740 | MS.gene033616:CDS |
| GTACAAAGTGCAATCAGAGA+TGG | 0.568148 | 7.4:+24318732 | MS.gene033616:CDS |
| TCTCAGCAATCTCCACCTCC+AGG | 0.572777 | 7.4:+24318894 | MS.gene033616:CDS |
| GTTTACACTTTAGACATACC+TGG | 0.572898 | 7.4:-24318912 | None:intergenic |
| AAAAGTGTCCGCTAGGCGAA+GGG | 0.575500 | 7.4:-24318569 | None:intergenic |
| GTGCAATTGATATTCAACAA+AGG | 0.577816 | 7.4:-24318330 | None:intergenic |
| GAGATGGATTTGTGGTGAGA+TGG | 0.580019 | 7.4:+24318748 | MS.gene033616:CDS |
| TGTTTAAACCATAAACAAAG+AGG | 0.580084 | 7.4:-24318503 | None:intergenic |
| AGTAGGGAGGATATTAAACA+TGG | 0.587275 | 7.4:-24318151 | None:intergenic |
| GTATCTGAATCAGTGTAAAG+AGG | 0.596380 | 7.4:-24318197 | None:intergenic |
| TTTGTCATGCCAAGAAAGCA+CGG | 0.601118 | 7.4:+24318662 | MS.gene033616:CDS |
| GAAGAATATGGAAAGTAGGG+AGG | 0.612426 | 7.4:-24318164 | None:intergenic |
| AGAGAGGACTATTTGCAAGA+AGG | 0.626124 | 7.4:+24318438 | MS.gene033616:CDS |
| ATTGATTGTTATGTAGCTGG+TGG | 0.627071 | 7.4:-24318358 | None:intergenic |
| ATTACTTTCCCTTCGCCTAG+CGG | 0.633096 | 7.4:+24318561 | MS.gene033616:CDS |
| AATTGATATTCAACAAAGGG+TGG | 0.651245 | 7.4:-24318326 | None:intergenic |
| GGGGATCGACCAAAAGAGTG+TGG | 0.667307 | 7.4:+24318303 | MS.gene033616:CDS |
| TAAACCATAAACAAAGAGGT+CGG | 0.670477 | 7.4:-24318499 | None:intergenic |
| GAAGGGAAAGTAATTGAAGG+TGG | 0.702291 | 7.4:-24318552 | None:intergenic |
| TACACTTTAGACATACCTGG+AGG | 0.705855 | 7.4:-24318909 | None:intergenic |
| TGTTATGAGAATTACCAGAG+AGG | 0.771694 | 7.4:+24318422 | MS.gene033616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTCATAACATGTAAATT+AGG | - | chr7.4:24318414-24318433 | None:intergenic | 20.0% |
| !! | TTCTCATAACATGTAAATTA+GGG | - | chr7.4:24318413-24318432 | None:intergenic | 20.0% |
| ! | AATTGAAGAATATGGAAAGT+AGG | - | chr7.4:24318171-24318190 | None:intergenic | 25.0% |
| ! | ATTGAAGAATATGGAAAGTA+GGG | - | chr7.4:24318170-24318189 | None:intergenic | 25.0% |
| ! | CTGATGAATATGTTTATACT+TGG | + | chr7.4:24318613-24318632 | MS.gene033616:CDS | 25.0% |
| ! | GAATATGTTTATACTTGGTT+TGG | + | chr7.4:24318618-24318637 | MS.gene033616:CDS | 25.0% |
| ! | GGATTATGAATTGAAGAATA+TGG | - | chr7.4:24318179-24318198 | None:intergenic | 25.0% |
| ! | TGCAATTGATATTCAACAAA+GGG | - | chr7.4:24318332-24318351 | None:intergenic | 25.0% |
| ! | TGTGAGAATCTATTTAATTG+TGG | + | chr7.4:24318246-24318265 | MS.gene033616:CDS | 25.0% |
| ! | TGTGGAACTATAAAACAAAT+TGG | + | chr7.4:24318264-24318283 | MS.gene033616:CDS | 25.0% |
| ! | TGTTTAAACCATAAACAAAG+AGG | - | chr7.4:24318506-24318525 | None:intergenic | 25.0% |
| AATCAATGAAGTCAAGTATC+TGG | + | chr7.4:24318374-24318393 | MS.gene033616:CDS | 30.0% | |
| AATTGATATTCAACAAAGGG+TGG | - | chr7.4:24318329-24318348 | None:intergenic | 30.0% | |
| GTGCAATTGATATTCAACAA+AGG | - | chr7.4:24318333-24318352 | None:intergenic | 30.0% | |
| TAAACCATAAACAAAGAGGT+CGG | - | chr7.4:24318502-24318521 | None:intergenic | 30.0% | |
| ! | AACAATCTCACACTCTTTTA+TGG | + | chr7.4:24318525-24318544 | MS.gene033616:CDS | 30.0% |
| ! | TTCATTGATTGTTATGTAGC+TGG | - | chr7.4:24318364-24318383 | None:intergenic | 30.0% |
| !! | ACTTGGTTTGGTTCTAATAT+TGG | + | chr7.4:24318630-24318649 | MS.gene033616:CDS | 30.0% |
| !! | CACTTTTTATGTCCTTCAAA+TGG | + | chr7.4:24318585-24318604 | MS.gene033616:CDS | 30.0% |
| !!! | AACAAATTGGTTTTCCTTTC+TGG | + | chr7.4:24318277-24318296 | MS.gene033616:CDS | 30.0% |
| !!! | ACAAATTGGTTTTCCTTTCT+GGG | + | chr7.4:24318278-24318297 | MS.gene033616:CDS | 30.0% |
| AGTAGGGAGGATATTAAACA+TGG | - | chr7.4:24318154-24318173 | None:intergenic | 35.0% | |
| ATTGATTGTTATGTAGCTGG+TGG | - | chr7.4:24318361-24318380 | None:intergenic | 35.0% | |
| CATAACATGTAAATTAGGGC+TGG | - | chr7.4:24318409-24318428 | None:intergenic | 35.0% | |
| GAGCTTCATTAGAACAAGAT+TGG | - | chr7.4:24318869-24318888 | None:intergenic | 35.0% | |
| GTATCTGAATCAGTGTAAAG+AGG | - | chr7.4:24318200-24318219 | None:intergenic | 35.0% | |
| TAGATTCTCACAACCTTCAT+CGG | - | chr7.4:24318238-24318257 | None:intergenic | 35.0% | |
| TCATCAGAAGAACCATTTGA+AGG | - | chr7.4:24318600-24318619 | None:intergenic | 35.0% | |
| TGTTATGAGAATTACCAGAG+AGG | + | chr7.4:24318422-24318441 | MS.gene033616:CDS | 35.0% | |
| !! | CAAAAATCAGGTGGATTTTG+TGG | + | chr7.4:24318801-24318820 | MS.gene033616:CDS | 35.0% |
| !! | TGAAGTCAAGTATCTGGTTT+TGG | + | chr7.4:24318380-24318399 | MS.gene033616:CDS | 35.0% |
| !! | TGTGAGAAGTGTCAAAAATC+AGG | + | chr7.4:24318789-24318808 | MS.gene033616:CDS | 35.0% |
| !!! | CAAATTGGTTTTCCTTTCTG+GGG | + | chr7.4:24318279-24318298 | MS.gene033616:CDS | 35.0% |
| AGAGAGGACTATTTGCAAGA+AGG | + | chr7.4:24318438-24318457 | MS.gene033616:CDS | 40.0% | |
| GAAGAATATGGAAAGTAGGG+AGG | - | chr7.4:24318167-24318186 | None:intergenic | 40.0% | |
| GAAGGGAAAGTAATTGAAGG+TGG | - | chr7.4:24318555-24318574 | None:intergenic | 40.0% | |
| GTACAAAGTGCAATCAGAGA+TGG | + | chr7.4:24318732-24318751 | MS.gene033616:CDS | 40.0% | |
| TACACTTTAGACATACCTGG+AGG | - | chr7.4:24318912-24318931 | None:intergenic | 40.0% | |
| TCATATTTGAGCTCCGATGA+AGG | + | chr7.4:24318222-24318241 | MS.gene033616:CDS | 40.0% | |
| TCATCGGAGCTCAAATATGA+AGG | - | chr7.4:24318222-24318241 | None:intergenic | 40.0% | |
| TTCTTGCAAATAGTCCTCTC+TGG | - | chr7.4:24318439-24318458 | None:intergenic | 40.0% | |
| TTTGTCATGCCAAGAAAGCA+CGG | + | chr7.4:24318662-24318681 | MS.gene033616:CDS | 40.0% | |
| ! | GTGGATTTTGTGGCTATAAC+TGG | + | chr7.4:24318811-24318830 | MS.gene033616:CDS | 40.0% |
| ! | TGCAATCAGAGATGGATTTG+TGG | + | chr7.4:24318740-24318759 | MS.gene033616:CDS | 40.0% |
| !! | GAGAAGTGTCAAAAATCAGG+TGG | + | chr7.4:24318792-24318811 | MS.gene033616:CDS | 40.0% |
| !!! | AGTCAAGTATCTGGTTTTGG+AGG | + | chr7.4:24318383-24318402 | MS.gene033616:CDS | 40.0% |
| AAGCAAACAACCTGCTACTG+TGG | + | chr7.4:24318840-24318859 | MS.gene033616:CDS | 45.0% | |
| ACTTTAGACATACCTGGAGG+TGG | - | chr7.4:24318909-24318928 | None:intergenic | 45.0% | |
| ATTACTTTCCCTTCGCCTAG+CGG | + | chr7.4:24318561-24318580 | MS.gene033616:CDS | 45.0% | |
| GGCGAAGGGAAAGTAATTGA+AGG | - | chr7.4:24318558-24318577 | None:intergenic | 45.0% | |
| TTTGTGGTGAGATGGATAGC+TGG | + | chr7.4:24318756-24318775 | MS.gene033616:CDS | 45.0% | |
| ! | GACACCGACCTCTTTGTTTA+TGG | + | chr7.4:24318495-24318514 | MS.gene033616:CDS | 45.0% |
| ! | GAGATGGATTTGTGGTGAGA+TGG | + | chr7.4:24318748-24318767 | MS.gene033616:CDS | 45.0% |
| !! | GGACATAAAAAGTGTCCGCT+AGG | - | chr7.4:24318579-24318598 | None:intergenic | 45.0% |
| !! | TTGGTTTTCCTTTCTGGGGA+GGG | + | chr7.4:24318283-24318302 | MS.gene033616:CDS | 45.0% |
| !!! | ATTGGTTTTCCTTTCTGGGG+AGG | + | chr7.4:24318282-24318301 | MS.gene033616:CDS | 45.0% |
| CCAGAACAACCGTGCTTTCT+TGG | - | chr7.4:24318674-24318693 | None:intergenic | 50.0% | |
| ! | AAAGGGTGGCCACACTCTTT+TGG | - | chr7.4:24318315-24318334 | None:intergenic | 50.0% |
| ! | CCAAGAAAGCACGGTTGTTC+TGG | + | chr7.4:24318671-24318690 | MS.gene033616:CDS | 50.0% |
| !! | AAAAAGTGTCCGCTAGGCGA+AGG | - | chr7.4:24318573-24318592 | None:intergenic | 50.0% |
| !! | AAAAGTGTCCGCTAGGCGAA+GGG | - | chr7.4:24318572-24318591 | None:intergenic | 50.0% |
| !! | AGATTGGTCTCCACAGTAGC+AGG | - | chr7.4:24318853-24318872 | None:intergenic | 50.0% |
| !! | TGGTTTTCCTTTCTGGGGAG+GGG | + | chr7.4:24318284-24318303 | MS.gene033616:CDS | 50.0% |
| GGGGATCGACCAAAAGAGTG+TGG | + | chr7.4:24318303-24318322 | MS.gene033616:CDS | 55.0% | |
| GGTGGAGATTGCTGAGACTG+TGG | - | chr7.4:24318891-24318910 | None:intergenic | 55.0% | |
| TCTCAGCAATCTCCACCTCC+AGG | + | chr7.4:24318894-24318913 | MS.gene033616:CDS | 55.0% | |
| GGTCGATCCCCTCCCCAGAA+AGG | - | chr7.4:24318294-24318313 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 24318144 | 24318932 | 24318144 | ID=MS.gene033616 |
| chr7.4 | mRNA | 24318144 | 24318932 | 24318144 | ID=MS.gene033616.t1;Parent=MS.gene033616 |
| chr7.4 | exon | 24318144 | 24318932 | 24318144 | ID=MS.gene033616.t1.exon1;Parent=MS.gene033616.t1 |
| chr7.4 | CDS | 24318144 | 24318932 | 24318144 | ID=cds.MS.gene033616.t1;Parent=MS.gene033616.t1 |
| Gene Sequence |
| Protein sequence |
