AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033682

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033682.t1 MTR_7g083570 95.851 241 8 1 1 241 50 288 3.82e-174 480
MS.gene033682.t1 MTR_3g100750 47.475 198 94 3 39 227 59 255 2.21e-61 193
MS.gene033682.t1 MTR_8g069110 48.125 160 82 1 68 227 109 267 3.13e-53 173
MS.gene033682.t1 MTR_2g076350 41.176 204 107 3 40 230 25 228 1.84e-48 160
MS.gene033682.t1 MTR_6g077990 39.394 198 111 2 32 228 8 197 6.21e-46 152
MS.gene033682.t1 MTR_6g077990 43.293 164 93 0 65 228 33 196 2.16e-45 150
MS.gene033682.t1 MTR_1g033750 38.857 175 107 0 55 229 48 222 2.62e-45 151
MS.gene033682.t1 MTR_1g114640 38.547 179 110 0 49 227 40 218 6.21e-45 150
MS.gene033682.t1 MTR_6g077990 45.578 147 80 0 82 228 8 154 6.47e-44 145
MS.gene033682.t1 MTR_8g100065 41.975 162 93 1 68 228 22 183 1.06e-41 140
MS.gene033682.t1 MTR_8g100065 41.975 162 93 1 68 228 44 205 2.63e-41 140
MS.gene033682.t1 MTR_1g114750 35.758 165 106 0 65 229 56 220 1.43e-37 131
MS.gene033682.t1 MTR_1g114690 37.654 162 101 0 68 229 56 217 1.29e-35 126
MS.gene033682.t1 MTR_1g114690 36.196 163 104 0 67 229 55 217 4.27e-35 125
MS.gene033682.t1 MTR_1g115130 39.189 148 90 0 82 229 46 193 4.43e-34 122
MS.gene033682.t1 MTR_1g114680 50.926 108 53 0 122 229 55 162 6.95e-29 107
MS.gene033682.t1 MTR_1g114690 31.122 196 101 1 68 229 56 251 2.15e-28 108
MS.gene033682.t1 MTR_6g077990 41.071 112 66 0 65 176 33 144 1.48e-24 95.9
MS.gene033682.t1 MTR_1g114640 31.538 130 89 0 49 178 40 169 2.07e-24 95.9
MS.gene033682.t1 MTR_8g100065 38.739 111 67 1 65 174 19 129 6.89e-21 85.5
MS.gene033682.t1 MTR_8g100065 39.815 108 64 1 68 174 44 151 9.26e-21 85.9
MS.gene033682.t1 MTR_1g114690 32.456 114 77 0 67 180 55 168 9.54e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033682.t1 AT5G13200 61.905 231 77 2 1 230 43 263 5.10e-104 302
MS.gene033682.t1 AT5G13200 62.286 175 55 3 1 174 43 207 1.06e-73 223
MS.gene033682.t1 AT2G22475 44.670 197 98 3 41 227 96 291 1.42e-59 190
MS.gene033682.t1 AT1G28200 46.429 196 94 3 39 227 63 254 2.32e-59 188
MS.gene033682.t1 AT1G28200 46.429 196 94 3 39 227 63 254 2.32e-59 188
MS.gene033682.t1 AT5G23370 41.875 160 93 0 69 228 55 214 6.43e-44 147
MS.gene033682.t1 AT5G23360 41.615 161 94 0 69 229 47 207 2.49e-43 145
MS.gene033682.t1 AT5G08350 39.326 178 103 1 51 228 41 213 2.50e-43 146
MS.gene033682.t1 AT5G23350 41.615 161 94 0 69 229 55 215 7.31e-43 145
MS.gene033682.t1 AT4G40100 36.364 198 79 5 41 227 55 216 2.56e-38 133
MS.gene033682.t1 AT4G01600 34.906 212 129 3 25 227 13 224 2.72e-38 133
MS.gene033682.t1 AT2G22475 43.537 147 72 3 41 177 96 241 2.95e-38 134
MS.gene033682.t1 AT4G01600 33.816 207 133 3 25 227 13 219 2.47e-36 128
MS.gene033682.t1 AT4G01600 39.130 161 97 1 68 227 25 185 2.96e-36 127

Find 58 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCATATGTTTGATTCT+TGG 0.179773 7.1:+21575473 MS.gene033682:CDS
ACGATTGTGCCAGATGTTAT+TGG 0.273073 7.1:-21575518 None:intergenic
CTGTGATTTGCAGTTAAAAC+AGG 0.342749 7.1:+21576329 MS.gene033682:intron
TTCATTGTCTTCAGCTGCAA+TGG 0.365963 7.1:+21576355 MS.gene033682:CDS
TGTTACCTTTCAACAACAAC+AGG 0.385011 7.1:+21576485 MS.gene033682:CDS
TTGTTGTCTGGATGACTACT+TGG 0.395182 7.1:-21575316 None:intergenic
CACCCTCCGGCCAAGTGACT+TGG 0.405041 7.1:+21576582 MS.gene033682:CDS
TCATTGTCTTCAGCTGCAAT+GGG 0.409086 7.1:+21576356 MS.gene033682:CDS
GCCCGTCAACTGTCACAATC+TGG 0.413594 7.1:-21577442 None:intergenic
ACAACAACAGGGCCTGTTGC+AGG 0.417937 7.1:+21576497 MS.gene033682:CDS
ATGGTGCCTTTAGCGAAGAT+TGG 0.428167 7.1:+21577371 MS.gene033682:CDS
AAGTAAAGGGTTCCTGCAAC+AGG 0.429659 7.1:-21576509 None:intergenic
ATGAATATCTGATAAGTAAA+GGG 0.435046 7.1:-21576522 None:intergenic
ACTGTTCCAATCTTCGCTAA+AGG 0.459341 7.1:-21577377 None:intergenic
TTACAAACTGCTTCTGCTGA+TGG 0.483740 7.1:+21575349 MS.gene033682:CDS
GATGAATATCTGATAAGTAA+AGG 0.486525 7.1:-21576523 None:intergenic
GTCGTTGGTACGGCTACGCC+GGG 0.491352 7.1:-21577545 None:intergenic
GCACGTATGGATGATCTTGC+TGG 0.491754 7.1:-21575405 None:intergenic
ATCCAGATTGTGACAGTTGA+CGG 0.497932 7.1:+21577440 MS.gene033682:CDS
TAAGCCTAGCAGTAGTCCTA+TGG 0.515052 7.1:+21575444 MS.gene033682:CDS
AAGCTACCGCCAATAACATC+TGG 0.518887 7.1:+21575509 MS.gene033682:CDS
GGATGACTACTTGGTACAGC+TGG 0.522699 7.1:-21575307 None:intergenic
CTCCAAGTCACTTGGCCGGA+GGG 0.523356 7.1:-21576584 None:intergenic
CTACTGCTAGGCTTATCAAC+AGG 0.523543 7.1:-21575436 None:intergenic
TGATTCTCCCTCATGATCAC+AGG 0.530214 7.1:-21577404 None:intergenic
TCCAGATTGTGACAGTTGAC+GGG 0.531799 7.1:+21577441 MS.gene033682:CDS
TTGAGTTTCACTGCACCCTC+CGG 0.532381 7.1:+21576569 MS.gene033682:CDS
ACAGGACTGTGTTGCACGTA+TGG 0.537458 7.1:-21575418 None:intergenic
GAGGGTGCAGTGAAACTCAA+AGG 0.539333 7.1:-21576566 None:intergenic
CAGGCCCTGTTGTTGTTGAA+AGG 0.548045 7.1:-21576490 None:intergenic
CAGTTAATCCTGTGATCATG+AGG 0.557822 7.1:+21577396 MS.gene033682:CDS
ATTGCAGCTGAAGACAATGA+AGG 0.560885 7.1:-21576353 None:intergenic
ACAAGGACAACCTCAGCCTC+AGG 0.564940 7.1:+21575372 MS.gene033682:CDS
AGGGTGCAGTGAAACTCAAA+GGG 0.565964 7.1:-21576565 None:intergenic
TTGAAGAACTAGTTAGTCGT+TGG 0.566224 7.1:-21577560 None:intergenic
AGTCGTTGGTACGGCTACGC+CGG 0.571636 7.1:-21577546 None:intergenic
GTAGCTCCAAGTCACTTGGC+CGG 0.578164 7.1:-21576588 None:intergenic
GAACTAGTTAGTCGTTGGTA+CGG 0.588752 7.1:-21577555 None:intergenic
TGTAGTAGCTCCAAGTCACT+TGG 0.593028 7.1:-21576592 None:intergenic
ACTGCTTCTGCTGATGGACA+AGG 0.594269 7.1:+21575355 MS.gene033682:CDS
ATTGTGCCAGATGTTATTGG+CGG 0.596019 7.1:-21575515 None:intergenic
GCTCCAAGTCACTTGGCCGG+AGG 0.599038 7.1:-21576585 None:intergenic
ATATGAAGAATTGATTCCAT+AGG 0.605924 7.1:-21575460 None:intergenic
TAGTAATGAACCTGAGGCTG+AGG 0.610263 7.1:-21575382 None:intergenic
GATTCCATAGGACTACTGCT+AGG 0.615191 7.1:-21575448 None:intergenic
TAAAGCAGTAAAGAACCTAT+CGG 0.619248 7.1:+21577499 MS.gene033682:CDS
AACTGGGGAACACATATGAT+GGG 0.620571 7.1:+21575280 None:intergenic
GCAGTAAAGAACCTATCGGA+AGG 0.626352 7.1:+21577503 MS.gene033682:CDS
AGTGACTTGGAGCTACTACA+AGG 0.629250 7.1:+21576595 MS.gene033682:CDS
GACTGTAAAAGCGATATCAG+AGG 0.638142 7.1:+21576391 MS.gene033682:CDS
AATGTGAGATGCCTTCCGAT+AGG 0.639873 7.1:-21577514 None:intergenic
ACTGTAAAAGCGATATCAGA+GGG 0.644668 7.1:+21576392 MS.gene033682:CDS
TGCTGGTAGTAATGAACCTG+AGG 0.645046 7.1:-21575388 None:intergenic
GTTACCTTTCAACAACAACA+GGG 0.667635 7.1:+21576486 MS.gene033682:CDS
AGTTAATCCTGTGATCATGA+GGG 0.672652 7.1:+21577397 MS.gene033682:CDS
TGTGATTTGCAGTTAAAACA+GGG 0.680349 7.1:+21576330 MS.gene033682:intron
CATTGTCTTCAGCTGCAATG+GGG 0.684360 7.1:+21576357 MS.gene033682:CDS
GTAAAAGCGATATCAGAGGG+TGG 0.696098 7.1:+21576395 MS.gene033682:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATATGAAAATAGTTT+TGG - chr7.1:21576041-21576060 None:intergenic 10.0%
!!! TAATTTAATTGAATTTTATG+AGG + chr7.1:21575743-21575762 MS.gene033682:intron 10.0%
!!! TGTATTTATGTTTTATATTA+TGG - chr7.1:21577237-21577256 None:intergenic 10.0%
!! CTGTTCATAAATATAATAAA+CGG - chr7.1:21576625-21576644 None:intergenic 15.0%
!!! AATTTTTATTAAAATTGTGG+TGG - chr7.1:21576205-21576224 None:intergenic 15.0%
!!! ATTTCAATTTTCATAGTTTA+AGG - chr7.1:21577299-21577318 None:intergenic 15.0%
!!! TTTCATATTTTATACTAAGT+TGG + chr7.1:21576048-21576067 MS.gene033682:intron 15.0%
!! AAAATTTCTATTACACCTTT+CGG + chr7.1:21577266-21577285 MS.gene033682:intron 20.0%
!! ATCAATCTATCTAAATATAG+AGG - chr7.1:21575566-21575585 None:intergenic 20.0%
!! ATGAATATCTGATAAGTAAA+GGG - chr7.1:21576525-21576544 None:intergenic 20.0%
!! ATTGAAATGAATGTTTGATA+TGG + chr7.1:21577311-21577330 MS.gene033682:intron 20.0%
!! CATAAACACTTATTAGTATA+AGG - chr7.1:21575822-21575841 None:intergenic 20.0%
!!! ATATATCTATGAGAGTTTTT+GGG + chr7.1:21576120-21576139 MS.gene033682:intron 20.0%
!!! TATATATCTATGAGAGTTTT+TGG + chr7.1:21576119-21576138 MS.gene033682:intron 20.0%
! ACTCTCATAGATATATAGTA+AGG - chr7.1:21576116-21576135 None:intergenic 25.0%
! GATGAATATCTGATAAGTAA+AGG - chr7.1:21576526-21576545 None:intergenic 25.0%
! TAATCCACTCAAGTAATTTA+CGG - chr7.1:21577079-21577098 None:intergenic 25.0%
! TTATATTGTGTAATAGGTGA+TGG + chr7.1:21577352-21577371 MS.gene033682:intron 25.0%
! TTCTTCATATGTTTGATTCT+TGG + chr7.1:21575473-21575492 MS.gene033682:CDS 25.0%
!! AATTAAGTTTGTTTCCAGAT+AGG + chr7.1:21575854-21575873 MS.gene033682:intron 25.0%
!! ATATGAAGAATTGATTCCAT+AGG - chr7.1:21575463-21575482 None:intergenic 25.0%
!! TAAAGTTCTGATAATATCCA+CGG - chr7.1:21576172-21576191 None:intergenic 25.0%
!! TCATTTTCTAACTTCAAAAC+TGG + chr7.1:21576918-21576937 MS.gene033682:intron 25.0%
!! TTTTATGCTAACAATATTGC+TGG - chr7.1:21576968-21576987 None:intergenic 25.0%
!!! CTATTGAACAAATTTTGACA+AGG - chr7.1:21576649-21576668 None:intergenic 25.0%
!!! GACTTGTTATATTGTGTAAT+AGG + chr7.1:21577346-21577365 MS.gene033682:intron 25.0%
!!! TAAATTACTTGAGTGGATTA+GGG + chr7.1:21577079-21577098 MS.gene033682:intron 25.0%
!!! TACAATAGTCAATTTGTTGT+TGG + chr7.1:21576847-21576866 MS.gene033682:intron 25.0%
AAAATGAACACATGAGAGAA+CGG - chr7.1:21576905-21576924 None:intergenic 30.0%
AAATTGCAAGCAATGAAACA+CGG + chr7.1:21576991-21577010 MS.gene033682:intron 30.0%
ACGTCATATATGTAGTACTA+CGG + chr7.1:21577115-21577134 MS.gene033682:intron 30.0%
AGATATATAGTAAGGAGCTT+AGG - chr7.1:21576108-21576127 None:intergenic 30.0%
TAAAGCAGTAAAGAACCTAT+CGG + chr7.1:21577499-21577518 MS.gene033682:CDS 30.0%
TAGTCTAGCATCTCATAATT+TGG + chr7.1:21575884-21575903 MS.gene033682:intron 30.0%
TCACATATTGACACAAAAGA+GGG - chr7.1:21577196-21577215 None:intergenic 30.0%
TTATGAGATGCTAGACTATT+AGG - chr7.1:21575882-21575901 None:intergenic 30.0%
! GTAAATTACTTGAGTGGATT+AGG + chr7.1:21577078-21577097 MS.gene033682:intron 30.0%
! TGTGATTTGCAGTTAAAACA+GGG + chr7.1:21576330-21576349 MS.gene033682:intron 30.0%
! TTGTTCAATAGAGCATTAGA+GGG + chr7.1:21576658-21576677 MS.gene033682:intron 30.0%
! TTGTTGTTGGTAGACATAAT+TGG + chr7.1:21576860-21576879 MS.gene033682:intron 30.0%
! TTTGTTCAATAGAGCATTAG+AGG + chr7.1:21576657-21576676 MS.gene033682:intron 30.0%
!! TATATCGAGCATTGATAAGT+AGG + chr7.1:21576706-21576725 MS.gene033682:intron 30.0%
AAATGAACACATGAGAGAAC+GGG - chr7.1:21576904-21576923 None:intergenic 35.0%
AAGCTGGTATTGTTGTAATC+TGG - chr7.1:21577142-21577161 None:intergenic 35.0%
ACTGTAAAAGCGATATCAGA+GGG + chr7.1:21576392-21576411 MS.gene033682:CDS 35.0%
AGTTAATCCTGTGATCATGA+GGG + chr7.1:21577397-21577416 MS.gene033682:CDS 35.0%
AGTTCCGTAAATTACTTGAG+TGG + chr7.1:21577072-21577091 MS.gene033682:intron 35.0%
CTCACATATTGACACAAAAG+AGG - chr7.1:21577197-21577216 None:intergenic 35.0%
CTTACTTTCATAAGCTCTCT+AGG + chr7.1:21575703-21575722 MS.gene033682:intron 35.0%
GTTACCTTTCAACAACAACA+GGG + chr7.1:21576486-21576505 MS.gene033682:CDS 35.0%
TAGACATAATTGGCCGAATT+CGG + chr7.1:21576870-21576889 MS.gene033682:intron 35.0%
TAGACTATTAGGTTCCTATC+TGG - chr7.1:21575871-21575890 None:intergenic 35.0%
TGTTACCTTTCAACAACAAC+AGG + chr7.1:21576485-21576504 MS.gene033682:CDS 35.0%
TTGCCTAACATACACATGAA+GGG + chr7.1:21576266-21576285 MS.gene033682:intron 35.0%
TTTGCCTAACATACACATGA+AGG + chr7.1:21576265-21576284 MS.gene033682:intron 35.0%
! AATCCTTCTAGAAGTAAGGA+GGG - chr7.1:21575609-21575628 None:intergenic 35.0%
! AGTCAATCCTTCTAGAAGTA+AGG - chr7.1:21575613-21575632 None:intergenic 35.0%
! CTGTGATTTGCAGTTAAAAC+AGG + chr7.1:21576329-21576348 MS.gene033682:intron 35.0%
!!! AAAGCTGCTTTTTTGTTGTC+TGG - chr7.1:21575331-21575350 None:intergenic 35.0%
!!! GTCTTTTTCAGCTTCTCATT+TGG - chr7.1:21576458-21576477 None:intergenic 35.0%
ACGATTGTGCCAGATGTTAT+TGG - chr7.1:21575521-21575540 None:intergenic 40.0%
ACGGGATTAATCACCGAATT+CGG - chr7.1:21576886-21576905 None:intergenic 40.0%
ACTGTTCCAATCTTCGCTAA+AGG - chr7.1:21577380-21577399 None:intergenic 40.0%
ATAAGTAGGTAGACACCTGA+GGG + chr7.1:21576720-21576739 MS.gene033682:intron 40.0%
ATCCAGATTGTGACAGTTGA+CGG + chr7.1:21577440-21577459 MS.gene033682:CDS 40.0%
ATTGACACAAAAGAGGGACA+AGG - chr7.1:21577190-21577209 None:intergenic 40.0%
ATTGCAGCTGAAGACAATGA+AGG - chr7.1:21576356-21576375 None:intergenic 40.0%
ATTGTGCCAGATGTTATTGG+CGG - chr7.1:21575518-21575537 None:intergenic 40.0%
CAGTTAATCCTGTGATCATG+AGG + chr7.1:21577396-21577415 MS.gene033682:CDS 40.0%
GACTGTAAAAGCGATATCAG+AGG + chr7.1:21576391-21576410 MS.gene033682:CDS 40.0%
GGTCGTTTGTTTACGCAATT+CGG + chr7.1:21577012-21577031 MS.gene033682:intron 40.0%
TAACCCTCCTTACTTCTAGA+AGG + chr7.1:21575603-21575622 MS.gene033682:intron 40.0%
TCATTGTCTTCAGCTGCAAT+GGG + chr7.1:21576356-21576375 MS.gene033682:CDS 40.0%
TGTTCCATTATACTACCCTC+AGG - chr7.1:21576738-21576757 None:intergenic 40.0%
TTACAAACTGCTTCTGCTGA+TGG + chr7.1:21575349-21575368 MS.gene033682:CDS 40.0%
TTCATTGTCTTCAGCTGCAA+TGG + chr7.1:21576355-21576374 MS.gene033682:CDS 40.0%
TTGACACAAAAGAGGGACAA+GGG - chr7.1:21577189-21577208 None:intergenic 40.0%
TTGTTGTCTGGATGACTACT+TGG - chr7.1:21575319-21575338 None:intergenic 40.0%
! AGTTCTGATAATATCCACGG+TGG - chr7.1:21576169-21576188 None:intergenic 40.0%
! CAATCCTTCTAGAAGTAAGG+AGG - chr7.1:21575610-21575629 None:intergenic 40.0%
! GGGTAGTATAATGGAACAAG+TGG + chr7.1:21576740-21576759 MS.gene033682:intron 40.0%
! GTTTAAGGCTCTTTACCGAA+AGG - chr7.1:21577284-21577303 None:intergenic 40.0%
!!! GGGCATGATTTTTGGTTCAT+GGG + chr7.1:21577461-21577480 MS.gene033682:CDS 40.0%
AAGCTACCGCCAATAACATC+TGG + chr7.1:21575509-21575528 MS.gene033682:CDS 45.0%
AAGTAAAGGGTTCCTGCAAC+AGG - chr7.1:21576512-21576531 None:intergenic 45.0%
AATGTGAGATGCCTTCCGAT+AGG - chr7.1:21577517-21577536 None:intergenic 45.0%
AGGGTGCAGTGAAACTCAAA+GGG - chr7.1:21576568-21576587 None:intergenic 45.0%
ATGGTGCCTTTAGCGAAGAT+TGG + chr7.1:21577371-21577390 MS.gene033682:CDS 45.0%
CATTGTCTTCAGCTGCAATG+GGG + chr7.1:21576357-21576376 MS.gene033682:CDS 45.0%
CCTAACATACACATGAAGGG+CGG + chr7.1:21576269-21576288 MS.gene033682:intron 45.0%
CTACTGCTAGGCTTATCAAC+AGG - chr7.1:21575439-21575458 None:intergenic 45.0%
GACACCTGAGGGTAGTATAA+TGG + chr7.1:21576731-21576750 MS.gene033682:intron 45.0%
GATAAGTAGGTAGACACCTG+AGG + chr7.1:21576719-21576738 MS.gene033682:intron 45.0%
GATTCCATAGGACTACTGCT+AGG - chr7.1:21575451-21575470 None:intergenic 45.0%
GCAGTAAAGAACCTATCGGA+AGG + chr7.1:21577503-21577522 MS.gene033682:CDS 45.0%
GTAAAAGCGATATCAGAGGG+TGG + chr7.1:21576395-21576414 MS.gene033682:CDS 45.0%
GTCGCAAAGGTAGACACAAT+TGG - chr7.1:21577038-21577057 None:intergenic 45.0%
GTGGATCGAAACATGCTCTA+AGG - chr7.1:21576150-21576169 None:intergenic 45.0%
TAAGCCTAGCAGTAGTCCTA+TGG + chr7.1:21575444-21575463 MS.gene033682:CDS 45.0%
TAGCTGCTCTATAGTCGCAA+AGG - chr7.1:21577051-21577070 None:intergenic 45.0%
TAGTAATGAACCTGAGGCTG+AGG - chr7.1:21575385-21575404 None:intergenic 45.0%
TCCAGATTGTGACAGTTGAC+GGG + chr7.1:21577441-21577460 MS.gene033682:CDS 45.0%
TGACACAAAAGAGGGACAAG+GGG - chr7.1:21577188-21577207 None:intergenic 45.0%
TGATTCTCCCTCATGATCAC+AGG - chr7.1:21577407-21577426 None:intergenic 45.0%
TGCTGGTAGTAATGAACCTG+AGG - chr7.1:21575391-21575410 None:intergenic 45.0%
TGTAGTAGCTCCAAGTCACT+TGG - chr7.1:21576595-21576614 None:intergenic 45.0%
! AGTGACTTGGAGCTACTACA+AGG + chr7.1:21576595-21576614 MS.gene033682:CDS 45.0%
! ATCTCACATTTTGTTGCGCC+CGG + chr7.1:21577527-21577546 MS.gene033682:CDS 45.0%
!! CAGTTGACGGGCATGATTTT+TGG + chr7.1:21577453-21577472 MS.gene033682:CDS 45.0%
!!! CGGGCATGATTTTTGGTTCA+TGG + chr7.1:21577460-21577479 MS.gene033682:CDS 45.0%
!!! TATAATTTTTATTAAAATTG+TGG - chr7.1:21576208-21576227 None:intergenic 5.0%
ACAGGACTGTGTTGCACGTA+TGG - chr7.1:21575421-21575440 None:intergenic 50.0%
CCGCCCTTCATGTGTATGTT+AGG - chr7.1:21576272-21576291 None:intergenic 50.0%
GCACGTATGGATGATCTTGC+TGG - chr7.1:21575408-21575427 None:intergenic 50.0%
GGATGACTACTTGGTACAGC+TGG - chr7.1:21575310-21575329 None:intergenic 50.0%
TTGAGTTTCACTGCACCCTC+CGG + chr7.1:21576569-21576588 MS.gene033682:CDS 50.0%
! ACTGCTTCTGCTGATGGACA+AGG + chr7.1:21575355-21575374 MS.gene033682:CDS 50.0%
! CAGGCCCTGTTGTTGTTGAA+AGG - chr7.1:21576493-21576512 None:intergenic 50.0%
! GAGGGTGCAGTGAAACTCAA+AGG - chr7.1:21576569-21576588 None:intergenic 50.0%
ACAACAACAGGGCCTGTTGC+AGG + chr7.1:21576497-21576516 MS.gene033682:CDS 55.0%
ACAAGGACAACCTCAGCCTC+AGG + chr7.1:21575372-21575391 MS.gene033682:CDS 55.0%
CACAAAAGAGGGACAAGGGG+TGG - chr7.1:21577185-21577204 None:intergenic 55.0%
CTAGCATAGCGTAGCGAAGC+TGG - chr7.1:21577158-21577177 None:intergenic 55.0%
GAGCATGTTTCGATCCACCG+TGG + chr7.1:21576152-21576171 MS.gene033682:intron 55.0%
GCCCGTCAACTGTCACAATC+TGG - chr7.1:21577445-21577464 None:intergenic 55.0%
GTAGCTCCAAGTCACTTGGC+CGG - chr7.1:21576591-21576610 None:intergenic 55.0%
AGTCGTTGGTACGGCTACGC+CGG - chr7.1:21577549-21577568 None:intergenic 60.0%
CTCCAAGTCACTTGGCCGGA+GGG - chr7.1:21576587-21576606 None:intergenic 60.0%
CACCCTCCGGCCAAGTGACT+TGG + chr7.1:21576582-21576601 MS.gene033682:CDS 65.0%
GCTCCAAGTCACTTGGCCGG+AGG - chr7.1:21576588-21576607 None:intergenic 65.0%
GTCGTTGGTACGGCTACGCC+GGG - chr7.1:21577548-21577567 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 21575295 21577574 21575295 ID=MS.gene033682
chr7.1 mRNA 21575295 21577574 21575295 ID=MS.gene033682.t1;Parent=MS.gene033682
chr7.1 exon 21575295 21575538 21575295 ID=MS.gene033682.t1.exon1;Parent=MS.gene033682.t1
chr7.1 CDS 21575295 21575538 21575295 ID=cds.MS.gene033682.t1;Parent=MS.gene033682.t1
chr7.1 exon 21576342 21576616 21576342 ID=MS.gene033682.t1.exon2;Parent=MS.gene033682.t1
chr7.1 CDS 21576342 21576616 21576342 ID=cds.MS.gene033682.t1;Parent=MS.gene033682.t1
chr7.1 exon 21577368 21577574 21577368 ID=MS.gene033682.t1.exon3;Parent=MS.gene033682.t1
chr7.1 CDS 21577368 21577574 21577368 ID=cds.MS.gene033682.t1;Parent=MS.gene033682.t1
Gene Sequence

>MS.gene033682

ATGATGGGAGCACCAGCTGTACCAAGTAGTCATCCAGACAACAAAAAAGCAGCTTTACAAACTGCTTCTGCTGATGGACAAGGACAACCTCAGCCTCAGGTTCATTACTACCAGCAAGATCATCCATACGTGCAACACAGTCCTGTTGATAAGCCTAGCAGTAGTCCTATGGAATCAATTCTTCATATGTTTGATTCTTGGAGTAAAAAAGCTGAAGCTACCGCCAATAACATCTGGCACAATCGTGAGTGACTAATTTTTATTCATTCCTCTATATTTAGATAGATTGATAGACTGATTTTAATTAATAACCCTCCTTACTTCTAGAAGGATTGACTTATTTGATCTTTTCTACTCACAGAAGCACTTGTGAGATCGTTTGTGATATTTTATGAAAATTGTTTTCAGCTTACTTTCATAAGCTCTCTAGGATAACTTATGCAAAAAATAATTTAATTGAATTTTATGAGGATAACTTATGCAAAAAACAATTTAATTGAATTTTATGTTTTGTTATAGAAATACCTTATACTAATAAGTGTTTATGCTATAAGCTGCAAATTAAGTTTGTTTCCAGATAGGAACCTAATAGTCTAGCATCTCATAATTTGGTATTGAAATTAATAATTATAAAATAGTATTTGAAATTAAAAATTGTCAATATATTAAGTTAGTTTTTTGCGTGAGTCAATTTAATATTGAAATTATCATCTAGAACTAAGATCTACTAGTATTTTCAGTTTCCAAAACTATTTTCATATTTTATACTAAGTTGGTAAATTATTTTACTTCAGTCATTAAATTGTATATCCTAAGCTCCTTACTATATATCTATGAGAGTTTTTGGGTAAGCCTTAGAGCATGTTTCGATCCACCGTGGATATTATCAGAACTTTATGTCATTGAGCCACCACAATTTTAATAAAAATTATAGTTTCGAGCTTCAACAAAATTATAGTGTCAATGTGATTTTGCCTAACATACACATGAAGGGCGGCTAAATCTTCGATTTTTATATGATGTTTTTGTTACTACTGTGATTTGCAGTTAAAACAGGGCCTTCATTGTCTTCAGCTGCAATGGGGAAGATGAATCTGACTGTAAAAGCGATATCAGAGGGTGGATTTGAGTCACTTTACAAACAAATATTCACTACTTATCCAAATGAGAAGCTGAAAAAGACATTTGCTTGTTACCTTTCAACAACAACAGGGCCTGTTGCAGGAACCCTTTACTTATCAGATATTCATCTAGCATTTTGCAGTGATCGCCCTTTGAGTTTCACTGCACCCTCCGGCCAAGTGACTTGGAGCTACTACAAGGTACTCCGTTTATTATATTTATGAACAGTCCTTGTCAAAATTTGTTCAATAGAGCATTAGAGGGATAACTATATAGAGTTTAATGATTATATATCGAGCATTGATAAGTAGGTAGACACCTGAGGGTAGTATAATGGAACAAGTGGAGCTGAAAGTGTAACGACTAACGAGCATAGTATTATTACAGAGTTTTGTACTTTGTAACTCTAGTTCAATGCATAATAGTAAAGTACAATAGTCAATTTGTTGTTGGTAGACATAATTGGCCGAATTCGGTGATTAATCCCGTTCTCTCATGTGTTCATTTTCTAACTTCAAAACTGGATTTGCTATTTTAGAAGTATCTTACCAGCAATATTGTTAGCATAAAATGTAAATTGCAAGCAATGAAACACGGTCGTTTGTTTACGCAATTCGGCCAATTGTGTCTACCTTTGCGACTATAGAGCAGCTATAGTTCCGTAAATTACTTGAGTGGATTAGGGTTTACAGTGTTACACGTCATATATGTAGTACTACGGTCCAGATTACAACAATACCAGCTTCGCTACGCTATGCTAGCTCACCACCCCTTGTCCCTCTTTTGTGTCAATATGTGAGTCATACTCAACAAATAGCCATAATATAAAACATAAATACATGATTCTGTAAAATTTCTATTACACCTTTCGGTAAAGAGCCTTAAACTATGAAAATTGAAATGAATGTTTGATATGGTGTATGAAATTTGACTTGTTATATTGTGTAATAGGTGATGGTGCCTTTAGCGAAGATTGGAACAGTTAATCCTGTGATCATGAGGGAGAATCAATCAGAGAAGTATATCCAGATTGTGACAGTTGACGGGCATGATTTTTGGTTCATGGGTTTTGTTAATTATGATAAAGCAGTAAAGAACCTATCGGAAGGCATCTCACATTTTGTTGCGCCCGGCGTAGCCGTACCAACGACTAACTAG
Protein sequence

>MS.gene033682.t1

MMGAPAVPSSHPDNKKAALQTASADGQGQPQPQVHYYQQDHPYVQHSPVDKPSSSPMESILHMFDSWSKKAEATANNIWHNLKTGPSLSSAAMGKMNLTVKAISEGGFESLYKQIFTTYPNEKLKKTFACYLSTTTGPVAGTLYLSDIHLAFCSDRPLSFTAPSGQVTWSYYKVMVPLAKIGTVNPVIMRENQSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSEGISHFVAPGVAVPTTN