AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034314

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034314.t1 MTR_4g005090 98.000 500 8 1 1 500 2 499 0.0 986
MS.gene034314.t1 MTR_2g081930 28.132 455 276 17 55 495 106 523 3.25e-31 127
MS.gene034314.t1 MTR_4g081490 27.083 432 256 16 80 500 63 446 1.79e-27 115
MS.gene034314.t1 MTR_2g081950 27.187 423 254 18 82 490 18 400 7.48e-25 107
MS.gene034314.t1 MTR_8g447340 26.190 462 270 18 57 500 112 520 6.65e-19 90.1
MS.gene034314.t1 MTR_3g098360 70.370 54 16 0 426 479 72 125 9.65e-19 82.8
MS.gene034314.t1 MTR_5g075300 22.318 466 293 15 58 489 47 477 2.29e-17 85.1
MS.gene034314.t1 MTR_7g446340 24.138 464 271 18 58 489 83 497 1.11e-16 83.2
MS.gene034314.t1 MTR_6g007340 24.138 464 271 18 58 489 83 497 1.11e-16 83.2
MS.gene034314.t1 MTR_4g072030 24.018 433 275 15 82 489 79 482 2.68e-15 79.0
MS.gene034314.t1 MTR_8g077890 22.926 458 300 15 58 489 47 477 3.18e-15 78.6
MS.gene034314.t1 MTR_2g049020 25.856 263 183 7 6 260 1 259 1.10e-14 77.0
MS.gene034314.t1 MTR_1g074940 23.404 517 302 23 29 487 20 500 2.06e-14 75.9
MS.gene034314.t1 MTR_8g103500 24.213 413 240 13 58 439 46 416 7.21e-14 74.3
MS.gene034314.t1 MTR_3g084110 30.052 193 131 3 65 254 66 257 9.78e-14 73.9
MS.gene034314.t1 MTR_3g116240 22.294 462 298 12 58 489 56 486 2.58e-13 72.4
MS.gene034314.t1 MTR_7g082270 26.761 213 135 6 69 271 106 307 3.61e-13 72.0
MS.gene034314.t1 MTR_7g082270 26.923 182 114 4 69 241 106 277 5.55e-13 71.2
MS.gene034314.t1 MTR_6g088450 21.951 451 294 13 58 485 86 501 1.85e-12 69.7
MS.gene034314.t1 MTR_4g013205 28.643 199 118 5 69 258 77 260 2.31e-12 69.3
MS.gene034314.t1 MTR_1g116660 29.167 168 115 3 90 254 98 264 3.23e-12 68.9
MS.gene034314.t1 MTR_4g069500 22.936 436 287 14 81 493 31 440 3.87e-12 68.6
MS.gene034314.t1 MTR_4g069500 22.706 436 288 13 81 493 81 490 5.99e-12 68.2
MS.gene034314.t1 MTR_6g087910 27.650 217 132 6 57 263 79 280 7.50e-12 67.8
MS.gene034314.t1 MTR_7g005910 28.144 167 116 3 88 251 94 259 3.51e-11 65.9
MS.gene034314.t1 MTR_7g094450 26.368 201 143 3 57 256 67 263 4.69e-11 65.5
MS.gene034314.t1 MTR_2g013310 24.631 203 139 4 58 256 8 200 4.95e-11 65.1
MS.gene034314.t1 MTR_2g013310 24.631 203 139 4 58 256 81 273 5.53e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034314.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene034314.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene034314.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene034314.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene034314.t1 AT3G20660 26.007 546 298 20 4 498 24 514 4.44e-32 129
MS.gene034314.t1 AT3G18830 22.951 427 291 10 81 489 87 493 3.96e-17 84.7
MS.gene034314.t1 AT2G16130 24.464 466 289 15 58 492 54 487 1.62e-16 82.8
MS.gene034314.t1 AT1G67300 25.781 384 226 10 69 436 92 432 7.44e-16 80.5
MS.gene034314.t1 AT2G16120 24.406 463 287 15 58 489 54 484 1.37e-15 79.7
MS.gene034314.t1 AT1G73220 23.207 474 284 17 52 500 113 531 1.44e-15 79.7
MS.gene034314.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.21e-15 78.2
MS.gene034314.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.21e-15 78.2
MS.gene034314.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.39e-15 77.8
MS.gene034314.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.39e-15 77.8
MS.gene034314.t1 AT1G67300 25.936 374 219 10 69 427 92 422 9.50e-15 76.6
MS.gene034314.t1 AT1G67300 25.936 374 219 10 69 427 92 422 9.50e-15 76.6
MS.gene034314.t1 AT1G79820 28.740 254 142 9 69 310 95 321 1.02e-14 76.6
MS.gene034314.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.01e-14 74.7
MS.gene034314.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.12e-14 74.7
MS.gene034314.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.12e-14 74.7
MS.gene034314.t1 AT2G20780 24.318 440 252 18 81 489 106 495 8.00e-14 74.3
MS.gene034314.t1 AT2G20780 24.318 440 252 18 81 489 48 437 1.03e-13 73.6
MS.gene034314.t1 AT1G79360 25.053 475 266 19 57 498 98 515 1.04e-13 73.9
MS.gene034314.t1 AT1G79410 22.609 460 292 15 53 499 99 507 1.79e-13 73.2
MS.gene034314.t1 AT1G76430 19.963 536 326 15 29 497 18 517 3.79e-13 72.0
MS.gene034314.t1 AT1G16390 25.821 457 260 18 57 492 106 504 4.01e-12 68.9
MS.gene034314.t1 AT5G43360 21.639 476 271 19 29 443 20 454 5.58e-12 68.6
MS.gene034314.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene034314.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene034314.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene034314.t1 AT2G18480 23.846 390 232 14 81 439 73 428 4.08e-11 65.9

Find 123 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGTTGACCTTGATAATT+TGG 0.146854 4.3:+89909643 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4.3:-89909634 MS.gene034314:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4.3:-89908324 MS.gene034314:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4.3:+89909530 None:intergenic
AAAGGAATGATTTCTAATTT+AGG 0.203260 4.3:-89909698 MS.gene034314:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4.3:+89911747 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4.3:+89908265 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4.3:-89912047 MS.gene034314:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4.3:-89911717 MS.gene034314:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4.3:-89911718 MS.gene034314:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 4.3:-89912041 MS.gene034314:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4.3:+89909795 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4.3:-89909861 MS.gene034314:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4.3:+89909263 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4.3:-89911723 MS.gene034314:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4.3:-89909839 MS.gene034314:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4.3:+89909701 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4.3:+89909255 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4.3:+89909890 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4.3:+89909281 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4.3:+89909243 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4.3:+89909624 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4.3:+89911648 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4.3:+89909504 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4.3:+89911748 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4.3:-89909633 MS.gene034314:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 4.3:-89911957 MS.gene034314:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4.3:-89908288 MS.gene034314:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4.3:+89909644 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4.3:-89909990 MS.gene034314:intron
TCGTTTACGCCGGCATTGGT+TGG 0.434274 4.3:-89911998 MS.gene034314:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4.3:-89908420 MS.gene034314:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4.3:-89911860 MS.gene034314:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4.3:-89911711 MS.gene034314:CDS
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4.3:-89908289 MS.gene034314:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4.3:+89911933 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4.3:+89909899 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4.3:-89911825 MS.gene034314:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4.3:+89909282 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4.3:+89909505 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4.3:+89909651 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 4.3:+89911866 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4.3:+89909940 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4.3:-89912113 None:intergenic
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4.3:+89908272 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4.3:-89911859 MS.gene034314:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 4.3:-89912002 MS.gene034314:CDS
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4.3:+89909882 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 4.3:+89911989 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4.3:-89909652 MS.gene034314:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4.3:+89909531 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4.3:-89909266 MS.gene034314:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4.3:-89909890 MS.gene034314:CDS
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 4.3:-89911982 MS.gene034314:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4.3:-89908417 MS.gene034314:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4.3:+89909977 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4.3:-89911660 MS.gene034314:CDS
GCTACTGTTACTGCTACTGC+CGG 0.538066 4.3:-89911789 MS.gene034314:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4.3:+89909939 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4.3:+89908282 None:intergenic
TATGAAACTTTCTTGATGAG+AGG 0.540801 4.3:+89911905 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4.3:-89911653 MS.gene034314:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4.3:-89908429 MS.gene034314:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4.3:+89909752 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4.3:-89911714 MS.gene034314:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4.3:+89909935 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4.3:-89908400 MS.gene034314:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4.3:-89908390 MS.gene034314:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4.3:+89911635 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 4.3:+89909288 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4.3:-89909716 MS.gene034314:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4.3:-89909695 MS.gene034314:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4.3:+89909355 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4.3:+89908434 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4.3:+89911654 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4.3:-89908391 MS.gene034314:CDS
CTCCCAAACCAAGACCAACA+AGG 0.572336 4.3:+89911715 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4.3:+89911687 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4.3:-89909356 MS.gene034314:CDS
GAGCTACAATTACAAACAGA+AGG 0.576404 4.3:+89908334 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4.3:-89912098 MS.gene034314:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4.3:-89909989 MS.gene034314:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4.3:+89909374 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4.3:+89911910 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4.3:+89909934 None:intergenic
TCCCAAACCAAGACCAACAA+GGG 0.583537 4.3:+89911716 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4.3:-89909366 MS.gene034314:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4.3:-89909979 MS.gene034314:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4.3:-89911858 MS.gene034314:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4.3:+89908384 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4.3:-89908430 MS.gene034314:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4.3:-89911935 MS.gene034314:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4.3:-89908453 MS.gene034314:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4.3:-89909506 MS.gene034314:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4.3:+89908452 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4.3:-89911692 MS.gene034314:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4.3:-89911833 MS.gene034314:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4.3:+89909366 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4.3:-89911649 MS.gene034314:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4.3:+89909576 None:intergenic
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4.3:+89909802 None:intergenic
TGACAACCCTTCAGAAGACA+CGG 0.630940 4.3:-89909759 MS.gene034314:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4.3:-89908447 MS.gene034314:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4.3:-89911837 MS.gene034314:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4.3:-89909522 MS.gene034314:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4.3:+89908453 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4.3:+89909625 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4.3:+89909753 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4.3:+89909806 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4.3:-89909985 MS.gene034314:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 4.3:-89908378 MS.gene034314:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4.3:+89911653 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4.3:-89912112 None:intergenic
ATAAATATACACGATTGTGA+AGG 0.658702 4.3:+89909208 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 4.3:-89912008 MS.gene034314:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 4.3:+89908437 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4.3:-89909198 MS.gene034314:intron
TCATCATGTCTACACATCGT+CGG 0.680005 4.3:+89908227 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4.3:-89909267 MS.gene034314:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4.3:+89911749 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4.3:-89912111 None:intergenic
GCATAAAGACATTACCTCTG+GGG 0.717940 4.3:+89909184 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4.3:+89911677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG - chr4.3:89908846-89908865 MS.gene034314:intron 10.0%
!! AGAAAAAATAAAGCAAATTA+TGG - chr4.3:89911587-89911606 MS.gene034314:intron 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr4.3:89909919-89909938 None:intergenic 15.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr4.3:89908988-89909007 MS.gene034314:intron 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr4.3:89910006-89910025 MS.gene034314:intron 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr4.3:89910006-89910025 None:intergenic 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr4.3:89909845-89909864 None:intergenic 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr4.3:89911587-89911606 None:intergenic 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr4.3:89911181-89911200 MS.gene034314:intron 15.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr4.3:89910636-89910655 MS.gene034314:intron 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr4.3:89909910-89909929 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr4.3:89910636-89910655 None:intergenic 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr4.3:89911367-89911386 MS.gene034314:intron 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr4.3:89911365-89911384 MS.gene034314:intron 20.0%
!! ATATATAATTGAAAAGATGG+TGG - chr4.3:89908849-89908868 MS.gene034314:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr4.3:89911366-89911385 MS.gene034314:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr4.3:89911815-89911834 MS.gene034314:CDS 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr4.3:89910007-89910026 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr4.3:89909911-89909930 None:intergenic 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr4.3:89911818-89911837 MS.gene034314:CDS 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr4.3:89909370-89909389 MS.gene034314:CDS 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + chr4.3:89910093-89910112 None:intergenic 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr4.3:89911329-89911348 None:intergenic 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr4.3:89908980-89908999 None:intergenic 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr4.3:89911495-89911514 MS.gene034314:intron 20.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr4.3:89909831-89909850 None:intergenic 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr4.3:89911506-89911525 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr4.3:89911291-89911310 MS.gene034314:intron 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - chr4.3:89909324-89909343 MS.gene034314:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr4.3:89911742-89911761 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr4.3:89911676-89911695 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr4.3:89911441-89911460 MS.gene034314:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr4.3:89911129-89911148 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + chr4.3:89911263-89911282 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr4.3:89910542-89910561 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr4.3:89911681-89911700 None:intergenic 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr4.3:89909976-89909995 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr4.3:89911711-89911730 MS.gene034314:CDS 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr4.3:89911677-89911696 None:intergenic 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr4.3:89909313-89909332 MS.gene034314:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr4.3:89909371-89909390 MS.gene034314:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr4.3:89909369-89909388 MS.gene034314:CDS 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr4.3:89910413-89910432 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr4.3:89909849-89909868 MS.gene034314:CDS 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr4.3:89910611-89910630 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr4.3:89910735-89910754 MS.gene034314:intron 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr4.3:89911623-89911642 None:intergenic 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr4.3:89911324-89911343 None:intergenic 25.0%
AAACAAATGCAAACTATACC+TGG - chr4.3:89911638-89911657 MS.gene034314:CDS 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr4.3:89908872-89908891 MS.gene034314:intron 30.0%
AATATAGTGAGTAGTGAGAT+AGG - chr4.3:89909289-89909308 MS.gene034314:CDS 30.0%
AGTCAAATCACTATTTACAG+AGG - chr4.3:89908950-89908969 MS.gene034314:intron 30.0%
AGTTGGTTAGTATTTAGATG+AGG - chr4.3:89909264-89909283 MS.gene034314:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr4.3:89908377-89908396 MS.gene034314:CDS 30.0%
GATGAAGCTCTTATAACATT+AGG - chr4.3:89908287-89908306 MS.gene034314:CDS 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr4.3:89910639-89910658 MS.gene034314:intron 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr4.3:89910171-89910190 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr4.3:89909241-89909260 MS.gene034314:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr4.3:89908432-89908451 None:intergenic 30.0%
TGACAAATCATAGAGATGAT+GGG - chr4.3:89910299-89910318 MS.gene034314:intron 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr4.3:89910172-89910191 MS.gene034314:intron 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr4.3:89908293-89908312 MS.gene034314:CDS 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr4.3:89909236-89909255 None:intergenic 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr4.3:89910201-89910220 MS.gene034314:intron 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr4.3:89909442-89909461 MS.gene034314:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr4.3:89910775-89910794 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr4.3:89909672-89909691 MS.gene034314:CDS 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr4.3:89909510-89909529 MS.gene034314:CDS 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG - chr4.3:89908858-89908877 MS.gene034314:intron 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG - chr4.3:89908857-89908876 MS.gene034314:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr4.3:89910898-89910917 MS.gene034314:intron 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - chr4.3:89908449-89908468 MS.gene034314:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr4.3:89909674-89909693 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr4.3:89910612-89910631 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr4.3:89910852-89910871 MS.gene034314:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr4.3:89910610-89910629 None:intergenic 30.0%
AAAACACTGCCCATAATAGA+AGG + chr4.3:89910713-89910732 None:intergenic 35.0%
AAACACTGCCCATAATAGAA+GGG + chr4.3:89910712-89910731 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr4.3:89910403-89910422 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr4.3:89909247-89909266 MS.gene034314:CDS 35.0%
AACAAATTCAAGAAACCACG+AGG + chr4.3:89908660-89908679 None:intergenic 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr4.3:89910402-89910421 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr4.3:89908427-89908446 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr4.3:89908588-89908607 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr4.3:89910701-89910720 MS.gene034314:intron 35.0%
AATACGGATCTCTTGAATCA+AGG - chr4.3:89909340-89909359 MS.gene034314:CDS 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr4.3:89910513-89910532 MS.gene034314:intron 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr4.3:89908590-89908609 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr4.3:89909544-89909563 None:intergenic 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr4.3:89909533-89909552 MS.gene034314:CDS 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr4.3:89910832-89910851 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr4.3:89910618-89910637 MS.gene034314:intron 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr4.3:89911094-89911113 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr4.3:89909547-89909566 MS.gene034314:CDS 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr4.3:89909139-89909158 None:intergenic 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr4.3:89910535-89910554 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr4.3:89908589-89908608 None:intergenic 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr4.3:89911545-89911564 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr4.3:89909543-89909562 None:intergenic 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr4.3:89909443-89909462 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr4.3:89911055-89911074 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr4.3:89910298-89910317 MS.gene034314:intron 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr4.3:89911772-89911791 MS.gene034314:CDS 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr4.3:89908871-89908890 MS.gene034314:intron 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr4.3:89911222-89911241 MS.gene034314:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr4.3:89910495-89910514 MS.gene034314:intron 35.0%
GAGCTACAATTACAAACAGA+AGG + chr4.3:89912003-89912022 None:intergenic 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr4.3:89911049-89911068 None:intergenic 35.0%
GCAATATCGCCTTGATATTA+AGG - chr4.3:89909431-89909450 MS.gene034314:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr4.3:89908567-89908586 None:intergenic 35.0%
GTAAGCACCAATTAACATTC+CGG + chr4.3:89908471-89908490 None:intergenic 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr4.3:89910192-89910211 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr4.3:89911056-89911075 None:intergenic 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr4.3:89910682-89910701 MS.gene034314:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr4.3:89910806-89910825 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr4.3:89911154-89911173 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr4.3:89910807-89910826 None:intergenic 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr4.3:89909967-89909986 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr4.3:89909857-89909876 MS.gene034314:CDS 35.0%
TTGCATAAAGACATTACCTC+TGG + chr4.3:89911155-89911174 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr4.3:89910455-89910474 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr4.3:89910184-89910203 MS.gene034314:intron 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr4.3:89910473-89910492 MS.gene034314:intron 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr4.3:89910694-89910713 None:intergenic 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr4.3:89910686-89910705 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr4.3:89910693-89910712 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr4.3:89910300-89910319 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG + chr4.3:89909762-89909781 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr4.3:89910714-89910733 MS.gene034314:intron 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr4.3:89909441-89909460 MS.gene034314:intron 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr4.3:89911793-89911812 MS.gene034314:CDS 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr4.3:89912010-89912029 MS.gene034314:CDS 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + chr4.3:89910079-89910098 None:intergenic 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr4.3:89908475-89908494 MS.gene034314:intron 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr4.3:89910068-89910087 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - chr4.3:89908461-89908480 MS.gene034314:CDS 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr4.3:89909233-89909252 None:intergenic 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr4.3:89909537-89909556 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr4.3:89908474-89908493 MS.gene034314:intron 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr4.3:89910899-89910918 MS.gene034314:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr4.3:89908476-89908495 MS.gene034314:intron 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr4.3:89909405-89909424 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr4.3:89909185-89909204 MS.gene034314:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr4.3:89908501-89908520 MS.gene034314:intron 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr4.3:89909403-89909422 MS.gene034314:intron 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr4.3:89909669-89909688 None:intergenic 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr4.3:89908742-89908761 MS.gene034314:intron 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr4.3:89908741-89908760 MS.gene034314:intron 35.0%
AAAAACCTCCACACAAGATG+GGG + chr4.3:89909500-89909519 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr4.3:89910397-89910416 None:intergenic 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr4.3:89908603-89908622 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr4.3:89910914-89910933 None:intergenic 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr4.3:89912072-89912091 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr4.3:89909869-89909888 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr4.3:89910982-89911001 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr4.3:89909502-89909521 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr4.3:89909869-89909888 MS.gene034314:CDS 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr4.3:89910585-89910604 None:intergenic 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr4.3:89909418-89909437 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr4.3:89910330-89910349 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr4.3:89911082-89911101 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr4.3:89910700-89910719 MS.gene034314:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr4.3:89910833-89910852 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr4.3:89909130-89909149 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr4.3:89910444-89910463 MS.gene034314:intron 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr4.3:89910447-89910466 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr4.3:89909501-89909520 None:intergenic 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr4.3:89908509-89908528 MS.gene034314:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr4.3:89911153-89911172 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr4.3:89910919-89910938 None:intergenic 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr4.3:89909345-89909364 MS.gene034314:CDS 40.0%
GGCATCAATCATACATTTCC+CGG + chr4.3:89910920-89910939 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr4.3:89909741-89909760 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr4.3:89911732-89911751 MS.gene034314:CDS 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr4.3:89910584-89910603 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr4.3:89909184-89909203 None:intergenic 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr4.3:89910828-89910847 MS.gene034314:intron 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr4.3:89909197-89909216 MS.gene034314:intron 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr4.3:89910329-89910348 None:intergenic 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr4.3:89909963-89909982 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr4.3:89908866-89908885 MS.gene034314:intron 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr4.3:89911934-89911953 MS.gene034314:CDS 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr4.3:89908352-89908371 MS.gene034314:CDS 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr4.3:89908720-89908739 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr4.3:89910064-89910083 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr4.3:89911080-89911099 MS.gene034314:intron 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr4.3:89910941-89910960 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr4.3:89911659-89911678 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr4.3:89909560-89909579 MS.gene034314:CDS 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - chr4.3:89908705-89908724 MS.gene034314:intron 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr4.3:89911944-89911963 MS.gene034314:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr4.3:89912046-89912065 MS.gene034314:CDS 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr4.3:89909723-89909742 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr4.3:89908605-89908624 MS.gene034314:intron 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr4.3:89909719-89909738 None:intergenic 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr4.3:89908497-89908516 MS.gene034314:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + chr4.3:89909059-89909078 None:intergenic 40.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr4.3:89908348-89908367 None:intergenic 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr4.3:89908713-89908732 MS.gene034314:intron 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr4.3:89911721-89911740 None:intergenic 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr4.3:89909399-89909418 MS.gene034314:intron 40.0%
ACCATCCAGGTACCTCTATT+AGG + chr4.3:89908689-89908708 None:intergenic 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr4.3:89911953-89911972 None:intergenic 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr4.3:89910761-89910780 None:intergenic 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr4.3:89908326-89908345 MS.gene034314:CDS 45.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr4.3:89908236-89908255 MS.gene034314:CDS 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr4.3:89910345-89910364 MS.gene034314:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr4.3:89911136-89911155 MS.gene034314:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr4.3:89909454-89909473 MS.gene034314:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr4.3:89910398-89910417 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr4.3:89909878-89909897 MS.gene034314:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr4.3:89909714-89909733 None:intergenic 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr4.3:89909466-89909485 MS.gene034314:intron 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr4.3:89910531-89910550 None:intergenic 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr4.3:89908621-89908640 None:intergenic 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr4.3:89911067-89911086 MS.gene034314:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr4.3:89909459-89909478 MS.gene034314:intron 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr4.3:89910343-89910362 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr4.3:89910575-89910594 MS.gene034314:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr4.3:89909550-89909569 MS.gene034314:CDS 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr4.3:89909465-89909484 MS.gene034314:intron 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr4.3:89908404-89908423 None:intergenic 45.0%
TTTATCGCACCAAGTGGAGT+CGG + chr4.3:89909053-89909072 None:intergenic 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr4.3:89909467-89909486 MS.gene034314:intron 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr4.3:89908674-89908693 MS.gene034314:intron 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - chr4.3:89908698-89908717 MS.gene034314:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr4.3:89908922-89908941 MS.gene034314:intron 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr4.3:89910942-89910961 MS.gene034314:intron 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr4.3:89910438-89910457 None:intergenic 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr4.3:89909559-89909578 MS.gene034314:CDS 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - chr4.3:89911956-89911975 MS.gene034314:CDS 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr4.3:89911943-89911962 MS.gene034314:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr4.3:89912045-89912064 MS.gene034314:CDS 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr4.3:89909449-89909468 MS.gene034314:intron 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr4.3:89908611-89908630 MS.gene034314:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr4.3:89910943-89910962 MS.gene034314:intron 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr4.3:89909720-89909739 None:intergenic 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr4.3:89908617-89908636 MS.gene034314:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr4.3:89908685-89908704 MS.gene034314:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr4.3:89908616-89908635 MS.gene034314:intron 45.0%
ACCGGAAAACACAACCATCC+AGG + chr4.3:89908702-89908721 None:intergenic 50.0%
AGAAACCACGAGGACAAGAC+AGG + chr4.3:89908650-89908669 None:intergenic 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr4.3:89911917-89911936 MS.gene034314:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr4.3:89909709-89909728 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr4.3:89912065-89912084 None:intergenic 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr4.3:89910812-89910831 MS.gene034314:intron 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr4.3:89908683-89908702 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr4.3:89909098-89909117 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr4.3:89908684-89908703 None:intergenic 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr4.3:89908622-89908641 None:intergenic 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr4.3:89911068-89911087 MS.gene034314:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr4.3:89909460-89909479 MS.gene034314:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - chr4.3:89909489-89909508 MS.gene034314:CDS 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr4.3:89909710-89909729 None:intergenic 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr4.3:89911914-89911933 MS.gene034314:CDS 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr4.3:89910344-89910363 MS.gene034314:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr4.3:89910978-89910997 MS.gene034314:intron 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr4.3:89908545-89908564 MS.gene034314:intron 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr4.3:89910058-89910077 None:intergenic 50.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr4.3:89908399-89908418 MS.gene034314:CDS 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr4.3:89909458-89909477 MS.gene034314:intron 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr4.3:89909492-89909511 MS.gene034314:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr4.3:89912055-89912074 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr4.3:89909711-89909730 None:intergenic 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr4.3:89910349-89910368 MS.gene034314:intron 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr4.3:89908620-89908639 MS.gene034314:intron 50.0%
ACCAAGTGGAGTCGGCTACA+TGG + chr4.3:89909045-89909064 None:intergenic 55.0%
AGCCATCTCCAACCCAGTCT+TGG + chr4.3:89910360-89910379 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr4.3:89911074-89911093 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr4.3:89911881-89911900 MS.gene034314:CDS 55.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr4.3:89908332-89908351 MS.gene034314:CDS 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr4.3:89911887-89911906 MS.gene034314:CDS 55.0%
! TCCATGTAGCCGACTCCACT+TGG - chr4.3:89909041-89909060 MS.gene034314:intron 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr4.3:89910355-89910374 MS.gene034314:intron 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr4.3:89911885-89911904 None:intergenic 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr4.3:89908681-89908700 MS.gene034314:intron 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr4.3:89911884-89911903 None:intergenic 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr4.3:89908623-89908642 MS.gene034314:intron 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr4.3:89908336-89908355 MS.gene034314:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr4.3:89910971-89910990 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr4.3:89910968-89910987 MS.gene034314:intron 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr4.3:89911905-89911924 MS.gene034314:CDS 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr4.3:89911903-89911922 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr4.3:89911904-89911923 MS.gene034314:CDS 60.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr4.3:89910963-89910982 None:intergenic 65.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr4.3:89908642-89908661 MS.gene034314:intron 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr4.3:89911900-89911919 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 89908236 89912120 89908236 ID=MS.gene034314
chr4.3 mRNA 89908236 89912120 89908236 ID=MS.gene034314.t1;Parent=MS.gene034314
chr4.3 exon 89911593 89912120 89911593 ID=MS.gene034314.t1.exon1;Parent=MS.gene034314.t1
chr4.3 CDS 89911593 89912120 89911593 ID=cds.MS.gene034314.t1;Parent=MS.gene034314.t1
chr4.3 exon 89909483 89910008 89909483 ID=MS.gene034314.t1.exon2;Parent=MS.gene034314.t1
chr4.3 CDS 89909483 89910008 89909483 ID=cds.MS.gene034314.t1;Parent=MS.gene034314.t1
chr4.3 exon 89909199 89909401 89909199 ID=MS.gene034314.t1.exon3;Parent=MS.gene034314.t1
chr4.3 CDS 89909199 89909401 89909199 ID=cds.MS.gene034314.t1;Parent=MS.gene034314.t1
chr4.3 exon 89908236 89908481 89908236 ID=MS.gene034314.t1.exon4;Parent=MS.gene034314.t1
chr4.3 CDS 89908236 89908481 89908236 ID=cds.MS.gene034314.t1;Parent=MS.gene034314.t1
Gene Sequence

>MS.gene034314

ATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGGTAAATTCATTATCTTTGTCTGTTTCTTCATTCATTGCATTCAAAGATTAAAATCTATGTTAATGTTTTTTTTTTTTTTTTTTATATATATAATTGAAAAGATGGTGGAAATTAGGGTTAAGTGGTTTGGGCATGTAGAAAAGAATTATAGATTCTGTAGCAAAGAGAGCAGTTCTGATGGAGAATAGTCAAATCACTATTTACAGAGGAAGACCAAGAAAAAGTATAAGAAAAGATAGAAATATGGTTTATGATAGAACATTATAGCATAACTTGATCCATGTAGCCGACTCCACTTGGTGCGATAAAACTTGATTGTTCTTCTTTCTTTCCTAGCTTTGCACGCAGTTCATGATCTGTTTTCCTAGCTTTCCTCTGTTACAATGATACACGATAGACATACATATTGATTGTAAACCAGTACTTAAGAGTGTCTACACTAGGAGAGAAAAGAGGATAACTGACACCTCCGCAAATGTAACAAAATGAGACATAAGAGGAGTTGGTTAGTATTTAGATGAGGTTAATATAGTGAGTAGTGAGATAGGTAGAAACAGAAAAAGTATGTAAGGAAAGAATACGGATCTCTTGAATCAAGGAAAGGTCAATGTGTTTTACTTAACAAAGGGGTGTATGTGCCATTTTAGAACACCAAAGGAAGGTGAGTGCAATATCGCCTTGATATTAAGGCTTTGTCTGGGTGTTTGGAAAGGAAGGGGAAAGGGGAGTAGATCCCCATCTTGTGTGGAGGTTTTTCTTTTTTCATTGGACCAAAACCCTTCAATATGTAGGAAACGTGTTGAAGGAGGATTTTGAGGGTTTTGAATAAATCTATAAATCATTTTCATCTCTTTATAATACTCTCAAATCAAAGAAAATATTAGCAATATGCATGCTCTCATCCTCTCCAAAAGTACTCTTCAAAGTAAGGTGAAAGATGCTCCCCTCCTTTCCCTCCTAACACTCAAACAAAGCCTAGATGATTCAAATCTCAGCCAGTTTGCAGTTAAACTAGTAGTTATAATGTTAACTCTATTTGTTTGTTGCGAGAGCTATGTATATTTCCAATTTGCTTAAGCCTTTATTTCAAATTTTGAACTTACCTAGGATTCAAGGTCTAAGTGTAGGAGAATCAGGAGATATCCCAAATCTCCTTGATTTAATTTAGTTCTAATTTCAGATGTTATTTATTATTTCCTTCCTATCATTCCTTCATGCAAGAAAGAATTTTATTGTGATCCCTCAATTTAAATAGTTGTAAACGGCTAAATTAATTACAAAAAGCATTTTGCCACTTCCTTCCTATGTGTAGCCAACAATTAACTGCCAAAAGACTTAAGTAATGTATAACATGACAGAAATTGTAAATTTTCTTTTTATTACGAAAATACAATCGCTAAAGAACCATTTACTTTCATCATTTAGCCTAGGAAACTGTTATGGCTTTACTTGTCTTAAGGAATATATCTAAACTTTTACTAATCTTGCTAATGTTCTGTCAATGCAATGTAACGTTTCTATCTCTGTTGAATACCTGACAAATCATAGAGATGATGGGTTCACCCAATGCAATGTTCCTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGGTATGTTTACTACTGATTTCAGAATTGTTTTACTATACCATTCCCGGGAAATGTATGATTGATGCCAAATTTTGTGCACAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGGTAATGTCTTTATGCAATATATTTTAATTAATTTTGAATGATCTGGTTGAAGCAGAGTTTTTGAGAGAAATCTTGTGCATTCTTCGGTAGAAAGAAGCTAAACCTATTCTATACTGTTGTTGAATATTAAGATAAGTACTATTGTATAGCAATTGGTAAAAGTCCAATCCAATAAGACTACTAAAATATGAAGCTTCTGCATCAATAAGAAGAATGTTATTATCTTAAGGGGTTGCTAACACGTGTCTTAAGAGCATATAATGCAAAGTATCAATTAAAAAGTACAGCATTATTAACTTCAAATGGTGTATTTTTCGTGAAACATTTATGTGTTTTATTTCTTAACCAATTCTTTTACGGAATTTGTTAGCATTTGCATTATTTCCTTACAAAGTTAGTTCTCTGTGTTTGTTACATAGAAGTGCTCCTAGAAAAAATAAAGCAAATTATGGATGAACTAGTCCTCTTTAAGAATTGTCAAAACAAATGCAAACTATACCTGGCTTTAAATTACTCCCTACCTCATTGTTTTTGAATTAACTGTTAAAACTAATAAGTTACCACAAAGAAAAAAGGTCTCACCAGTTATTAGATAGGAACTATTCGTTTATATACTTTCGTCATGTATAAGACATGGTTTCACAGCAATGTTTTTCGGTCTAATTCTTCTTTATAAATGGTGGAAGTTAACATGTGCAAGATTTATATGAACTGCAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>MS.gene034314.t1

MTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV