Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036310.t1 | XP_003612875.1 | 92.7 | 287 | 19 | 2 | 1 | 286 | 1 | 286 | 3.20E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036310.t1 | Q39061 | 30.5 | 200 | 128 | 4 | 98 | 287 | 118 | 316 | 6.2e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036310.t1 | G7KDR6 | 92.7 | 287 | 19 | 2 | 1 | 286 | 1 | 286 | 2.3e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036310 | MS.gene02482 | PPI |
| MS.gene036310 | MS.gene89616 | PPI |
| MS.gene036310 | MS.gene76448 | PPI |
| MS.gene036310 | MS.gene012058 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036310.t1 | MTR_5g030020 | 91.531 | 307 | 24 | 2 | 1 | 306 | 1 | 306 | 1.21e-171 | 478 |
| MS.gene036310.t1 | MTR_7g106440 | 31.944 | 216 | 114 | 4 | 76 | 271 | 89 | 291 | 3.75e-32 | 122 |
| MS.gene036310.t1 | MTR_3g099590 | 35.371 | 229 | 129 | 6 | 54 | 278 | 60 | 273 | 6.15e-31 | 117 |
| MS.gene036310.t1 | MTR_1g056520 | 37.838 | 185 | 94 | 6 | 96 | 268 | 108 | 283 | 2.20e-30 | 117 |
| MS.gene036310.t1 | MTR_3g075500 | 38.418 | 177 | 104 | 4 | 98 | 271 | 111 | 285 | 8.59e-29 | 112 |
| MS.gene036310.t1 | MTR_1g045510 | 35.393 | 178 | 108 | 3 | 95 | 271 | 112 | 283 | 1.06e-28 | 112 |
| MS.gene036310.t1 | MTR_4g104470 | 32.961 | 179 | 116 | 3 | 98 | 275 | 124 | 299 | 1.08e-25 | 103 |
| MS.gene036310.t1 | MTR_3g075500 | 38.889 | 162 | 94 | 4 | 98 | 256 | 111 | 270 | 3.05e-25 | 102 |
| MS.gene036310.t1 | MTR_1g064230 | 27.341 | 267 | 153 | 9 | 38 | 274 | 23 | 278 | 3.27e-20 | 89.0 |
| MS.gene036310.t1 | MTR_3g027140 | 32.584 | 178 | 107 | 6 | 96 | 265 | 60 | 232 | 3.72e-18 | 82.0 |
| MS.gene036310.t1 | MTR_7g102730 | 28.111 | 217 | 141 | 7 | 97 | 307 | 99 | 306 | 5.49e-17 | 81.6 |
| MS.gene036310.t1 | MTR_7g102730 | 28.108 | 185 | 119 | 4 | 97 | 271 | 190 | 370 | 9.21e-14 | 72.0 |
| MS.gene036310.t1 | MTR_7g102730 | 32.075 | 159 | 97 | 5 | 98 | 255 | 12 | 160 | 1.86e-11 | 65.1 |
| MS.gene036310.t1 | MTR_1g061870 | 25.368 | 272 | 159 | 9 | 61 | 298 | 50 | 311 | 6.62e-17 | 81.3 |
| MS.gene036310.t1 | MTR_1g061870 | 27.933 | 179 | 123 | 4 | 97 | 271 | 195 | 371 | 3.17e-12 | 67.4 |
| MS.gene036310.t1 | MTR_6g040070 | 31.522 | 184 | 115 | 5 | 97 | 271 | 106 | 287 | 1.64e-15 | 77.4 |
| MS.gene036310.t1 | MTR_1g097440 | 30.928 | 194 | 103 | 8 | 97 | 271 | 210 | 391 | 2.82e-14 | 73.6 |
| MS.gene036310.t1 | MTR_6g040190 | 30.435 | 184 | 117 | 5 | 97 | 271 | 201 | 382 | 1.56e-13 | 71.2 |
| MS.gene036310.t1 | MTR_4g085540 | 26.316 | 190 | 116 | 4 | 97 | 271 | 214 | 394 | 2.91e-12 | 67.4 |
| MS.gene036310.t1 | MTR_4g085540 | 27.933 | 179 | 119 | 5 | 95 | 271 | 121 | 291 | 1.13e-11 | 65.9 |
| MS.gene036310.t1 | MTR_4g085540 | 28.571 | 168 | 109 | 5 | 92 | 258 | 30 | 187 | 3.48e-11 | 64.3 |
| MS.gene036310.t1 | MTR_4g124940 | 24.074 | 216 | 148 | 5 | 96 | 308 | 46 | 248 | 1.45e-11 | 65.1 |
| MS.gene036310.t1 | MTR_2g097960 | 24.176 | 182 | 124 | 3 | 96 | 271 | 15 | 188 | 3.97e-11 | 63.9 |
| MS.gene036310.t1 | MTR_3g065190 | 29.310 | 174 | 111 | 4 | 100 | 271 | 29 | 192 | 4.54e-11 | 63.5 |
| MS.gene036310.t1 | MTR_4g131970 | 24.390 | 205 | 137 | 6 | 96 | 294 | 74 | 266 | 5.18e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036310.t1 | AT2G35410 | 48.763 | 283 | 132 | 5 | 1 | 275 | 1 | 278 | 3.98e-82 | 251 |
| MS.gene036310.t1 | AT4G09040 | 37.566 | 189 | 112 | 2 | 93 | 278 | 31 | 216 | 2.19e-34 | 125 |
| MS.gene036310.t1 | AT4G09040 | 37.566 | 189 | 112 | 2 | 93 | 278 | 91 | 276 | 1.12e-33 | 125 |
| MS.gene036310.t1 | AT5G50250 | 32.509 | 283 | 148 | 7 | 31 | 273 | 9 | 288 | 1.02e-31 | 120 |
| MS.gene036310.t1 | AT3G52380 | 32.461 | 191 | 106 | 5 | 98 | 273 | 118 | 300 | 3.66e-28 | 111 |
| MS.gene036310.t1 | AT4G24770 | 36.000 | 175 | 108 | 3 | 98 | 271 | 152 | 323 | 3.89e-28 | 111 |
| MS.gene036310.t1 | AT4G24770 | 36.000 | 175 | 108 | 3 | 98 | 271 | 152 | 323 | 3.89e-28 | 111 |
| MS.gene036310.t1 | AT1G60000 | 31.443 | 194 | 124 | 4 | 82 | 271 | 68 | 256 | 1.89e-24 | 99.8 |
| MS.gene036310.t1 | AT2G37220 | 31.658 | 199 | 103 | 5 | 98 | 271 | 93 | 283 | 4.87e-24 | 99.4 |
| MS.gene036310.t1 | AT3G52150 | 30.415 | 217 | 129 | 7 | 59 | 265 | 46 | 250 | 8.04e-19 | 84.3 |
| MS.gene036310.t1 | AT3G52150 | 30.415 | 217 | 129 | 7 | 59 | 265 | 46 | 250 | 8.04e-19 | 84.3 |
| MS.gene036310.t1 | AT1G01080 | 31.844 | 179 | 110 | 5 | 98 | 266 | 110 | 286 | 1.83e-18 | 84.3 |
| MS.gene036310.t1 | AT1G01080 | 31.461 | 178 | 111 | 5 | 98 | 266 | 110 | 285 | 2.68e-18 | 83.6 |
| MS.gene036310.t1 | AT1G01080 | 31.902 | 163 | 101 | 4 | 98 | 251 | 110 | 271 | 1.29e-16 | 79.0 |
| MS.gene036310.t1 | AT4G34110 | 30.000 | 190 | 109 | 5 | 97 | 271 | 216 | 396 | 3.22e-15 | 76.6 |
| MS.gene036310.t1 | AT4G34110 | 26.554 | 177 | 120 | 4 | 97 | 271 | 125 | 293 | 1.64e-11 | 65.5 |
| MS.gene036310.t1 | AT1G49760 | 26.500 | 200 | 131 | 6 | 97 | 288 | 134 | 325 | 1.42e-13 | 71.6 |
| MS.gene036310.t1 | AT1G49760 | 26.500 | 200 | 131 | 6 | 97 | 288 | 134 | 325 | 1.42e-13 | 71.6 |
| MS.gene036310.t1 | AT3G16380 | 26.601 | 203 | 136 | 4 | 78 | 271 | 184 | 382 | 2.30e-13 | 70.9 |
| MS.gene036310.t1 | AT1G22760 | 26.389 | 216 | 152 | 4 | 95 | 307 | 135 | 346 | 3.98e-13 | 70.1 |
| MS.gene036310.t1 | AT1G22760 | 23.958 | 192 | 118 | 5 | 97 | 271 | 230 | 410 | 3.95e-12 | 67.0 |
| MS.gene036310.t1 | AT2G23350 | 26.630 | 184 | 111 | 4 | 97 | 271 | 135 | 303 | 9.17e-12 | 66.2 |
| MS.gene036310.t1 | AT1G71770 | 24.519 | 208 | 128 | 6 | 82 | 271 | 224 | 420 | 1.09e-11 | 65.9 |
| MS.gene036310.t1 | AT1G71770 | 27.624 | 181 | 121 | 4 | 98 | 278 | 61 | 231 | 9.62e-11 | 63.2 |
| MS.gene036310.t1 | AT1G71770 | 24.519 | 208 | 128 | 6 | 82 | 271 | 224 | 420 | 1.09e-11 | 65.9 |
| MS.gene036310.t1 | AT1G71770 | 27.624 | 181 | 121 | 4 | 98 | 278 | 61 | 231 | 9.62e-11 | 63.2 |
| MS.gene036310.t1 | AT2G36660 | 27.841 | 176 | 117 | 5 | 97 | 271 | 113 | 279 | 1.47e-11 | 65.5 |
| MS.gene036310.t1 | AT1G34140 | 27.419 | 186 | 120 | 4 | 97 | 271 | 120 | 301 | 4.01e-11 | 63.9 |
Find 71 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGGAGCTGGAGGAGGTGG+AGG | 0.249111 | 5.3:+18975952 | None:intergenic |
| ACTTCTTCACTTCCAGCTTC+TGG | 0.261287 | 5.3:+18973206 | None:intergenic |
| AGGTTATACATTTGTTACTA+TGG | 0.261835 | 5.3:-18977563 | MS.gene036310:CDS |
| AGTTGAAGCATGGAGTTTAA+TGG | 0.267862 | 5.3:+18978064 | None:intergenic |
| ACATTTGTTACTATGGATTC+AGG | 0.282353 | 5.3:-18977556 | MS.gene036310:CDS |
| ATTAGGATTTATGACTCTTC+TGG | 0.285662 | 5.3:+18973158 | None:intergenic |
| GTGGATATTGTGAGAGAAAA+TGG | 0.287566 | 5.3:+18978019 | None:intergenic |
| TAAAGCGTAGCAGAGTGTTT+TGG | 0.351271 | 5.3:+18977965 | None:intergenic |
| GGAGCTGGAGGAGGTGGAGG+AGG | 0.377123 | 5.3:+18975955 | None:intergenic |
| TAGATTGTAAAGAGCAAAGA+TGG | 0.379214 | 5.3:-18977595 | MS.gene036310:CDS |
| GGAGTGGGAGCTGGAGGAGG+TGG | 0.381685 | 5.3:+18975949 | None:intergenic |
| AAATATCAGGCCGGATAGTA+AGG | 0.395140 | 5.3:-18976005 | MS.gene036310:CDS |
| CTTCCCTTGCAAAGCAGAAA+TGG | 0.396033 | 5.3:+18975738 | None:intergenic |
| ATCCCTTTGCAGGAGTTACT+TGG | 0.398199 | 5.3:-18973314 | MS.gene036310:intron |
| GGTGGGAAATCTGCTGGGTA+TGG | 0.419393 | 5.3:-18975799 | MS.gene036310:CDS |
| AAGACAACCCTGGCTGAAAC+TGG | 0.421042 | 5.3:+18975832 | None:intergenic |
| AGCAAAGATGGGAAGGGAAA+AGG | 0.425037 | 5.3:-18977583 | MS.gene036310:CDS |
| ACCCCTGGTGGGAAATCTGC+TGG | 0.433529 | 5.3:-18975805 | MS.gene036310:CDS |
| TTAGGAGTGGGAGCTGGAGG+AGG | 0.441065 | 5.3:+18975946 | None:intergenic |
| AGGGTTGTCTTTCAAACCCC+TGG | 0.459212 | 5.3:-18975820 | MS.gene036310:CDS |
| GCCTTGGTCTCTTTCTAAGC+CGG | 0.461671 | 5.3:-18977847 | MS.gene036310:CDS |
| TGGATTTGTTTCTTATCATA+CGG | 0.462438 | 5.3:-18975779 | MS.gene036310:CDS |
| ATTACATAACGAGCTTCCTT+AGG | 0.467393 | 5.3:+18975928 | None:intergenic |
| TCGTTGTCTTTAACTTGCCT+TGG | 0.470028 | 5.3:-18977863 | MS.gene036310:CDS |
| TCAAAACACCAGTTTCAGCC+AGG | 0.476508 | 5.3:-18975840 | MS.gene036310:CDS |
| TCTTTCTAAGCCGGATATCA+AGG | 0.480039 | 5.3:-18977838 | MS.gene036310:CDS |
| GCGAAGAGATCCTTGATATC+CGG | 0.480231 | 5.3:+18977828 | None:intergenic |
| GCATGGAGTTTAATGGAATC+TGG | 0.482931 | 5.3:+18978071 | None:intergenic |
| GGATTCAGGAGAGGAGGCTC+AGG | 0.485969 | 5.3:-18977542 | MS.gene036310:CDS |
| AAGAAGAAAAGTGAAGTTTG+TGG | 0.493594 | 5.3:+18978000 | None:intergenic |
| TAGATCTTGCTTTCCACGCA+AGG | 0.504732 | 5.3:+18975893 | None:intergenic |
| CAAACTCTACCCTTACTATC+CGG | 0.508382 | 5.3:+18975995 | None:intergenic |
| TGTGTGGTTCAGGAAATATC+AGG | 0.510663 | 5.3:-18976018 | MS.gene036310:intron |
| TTGATGTGTGAATACAGTTA+TGG | 0.514213 | 5.3:+18978136 | None:intergenic |
| TCCTTAGGAGTGGGAGCTGG+AGG | 0.524312 | 5.3:+18975943 | None:intergenic |
| GCTTCCTTAGGAGTGGGAGC+TGG | 0.524785 | 5.3:+18975940 | None:intergenic |
| TACCCAGCAGATTTCCCACC+AGG | 0.524803 | 5.3:+18975802 | None:intergenic |
| TCCTCCAGCTCCCACTCCTA+AGG | 0.525600 | 5.3:-18975944 | MS.gene036310:CDS |
| TGTAAAGAGCAAAGATGGGA+AGG | 0.529390 | 5.3:-18977590 | MS.gene036310:CDS |
| AAGGGATTGAAGTTGAAGCA+TGG | 0.531889 | 5.3:+18978054 | None:intergenic |
| GTAAGGGTAGAGTTTGCAAA+GGG | 0.535644 | 5.3:-18975988 | MS.gene036310:CDS |
| GACGACGCGCAACCAGAAGC+TGG | 0.536977 | 5.3:-18973218 | MS.gene036310:CDS |
| AGATTGTAAAGAGCAAAGAT+GGG | 0.546323 | 5.3:-18977594 | MS.gene036310:CDS |
| CTGCCATTTCTGCTTTGCAA+GGG | 0.550388 | 5.3:-18975741 | MS.gene036310:CDS |
| AGTAAGGGTAGAGTTTGCAA+AGG | 0.552899 | 5.3:-18975989 | MS.gene036310:CDS |
| CATTTCTGCTTTGCAAGGGA+AGG | 0.553509 | 5.3:-18975737 | MS.gene036310:intron |
| GCTGCCATTTCTGCTTTGCA+AGG | 0.563024 | 5.3:-18975742 | MS.gene036310:CDS |
| CCCCTGGTGGGAAATCTGCT+GGG | 0.563781 | 5.3:-18975804 | MS.gene036310:CDS |
| TCTTGCTTTCCACGCAAGGT+TGG | 0.567345 | 5.3:+18975897 | None:intergenic |
| GTTGATTCTAACGTTGCCAT+TGG | 0.567931 | 5.3:+18978158 | None:intergenic |
| TACTATGGATTCAGGAGAGG+AGG | 0.578732 | 5.3:-18977548 | MS.gene036310:CDS |
| TGTTTCTTATCATACGGAGG+AGG | 0.584671 | 5.3:-18975773 | MS.gene036310:CDS |
| TGTTACTATGGATTCAGGAG+AGG | 0.585105 | 5.3:-18977551 | MS.gene036310:CDS |
| CCCAGCAGATTTCCCACCAG+GGG | 0.587328 | 5.3:+18975804 | None:intergenic |
| TCTATGCATCCAACCTTGCG+TGG | 0.590146 | 5.3:-18975906 | MS.gene036310:CDS |
| GTTGTCTTTCAAACCCCTGG+TGG | 0.593929 | 5.3:-18975817 | MS.gene036310:CDS |
| CAAAACACCAGTTTCAGCCA+GGG | 0.593941 | 5.3:-18975839 | MS.gene036310:CDS |
| TAACGAGCTTCCTTAGGAGT+GGG | 0.608846 | 5.3:+18975934 | None:intergenic |
| TTGTCTTTCAAACCCCTGGT+GGG | 0.617575 | 5.3:-18975816 | MS.gene036310:CDS |
| ATAACGAGCTTCCTTAGGAG+TGG | 0.620126 | 5.3:+18975933 | None:intergenic |
| GTAAAGAGCAAAGATGGGAA+GGG | 0.628943 | 5.3:-18977589 | MS.gene036310:CDS |
| ACTCTGCTACGCTTTACAAG+AGG | 0.635592 | 5.3:-18977958 | MS.gene036310:CDS |
| AATATCAGGCCGGATAGTAA+GGG | 0.636833 | 5.3:-18976004 | MS.gene036310:CDS |
| AAGGATCTCTTCGCTCAATG+TGG | 0.649377 | 5.3:-18977819 | MS.gene036310:CDS |
| ATTTGTTTCTTATCATACGG+AGG | 0.652812 | 5.3:-18975776 | MS.gene036310:CDS |
| TGGTTCAGGAAATATCAGGC+CGG | 0.653607 | 5.3:-18976014 | MS.gene036310:intron |
| ACCCAGCAGATTTCCCACCA+GGG | 0.675913 | 5.3:+18975803 | None:intergenic |
| TGGAACTGTAATTGACGTTG+AGG | 0.676463 | 5.3:-18977799 | MS.gene036310:intron |
| TCCGGCTTAGAAAGAGACCA+AGG | 0.685478 | 5.3:+18977846 | None:intergenic |
| AGGGGTTTGAAAGACAACCC+TGG | 0.712579 | 5.3:+18975822 | None:intergenic |
| AAGGCAAGTTAAAGACAACG+AGG | 0.810771 | 5.3:+18977865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATGAATATAAAAATAT+TGG | - | chr5.3:18975228-18975247 | MS.gene036310:intron | 10.0% |
| !!! | AATTAGATAATTAATTTTAC+TGG | - | chr5.3:18974287-18974306 | MS.gene036310:intron | 10.0% |
| !!! | TGTTTTAATTTTTGAATTTT+TGG | - | chr5.3:18973571-18973590 | MS.gene036310:intron | 10.0% |
| !! | AAAAAAAAAAACTACCTAAA+AGG | - | chr5.3:18975035-18975054 | MS.gene036310:intron | 15.0% |
| !! | AAAAAAAAAACTACCTAAAA+GGG | - | chr5.3:18975036-18975055 | MS.gene036310:intron | 15.0% |
| !! | ATAATGAATCTTCTTAATAA+TGG | - | chr5.3:18973897-18973916 | MS.gene036310:intron | 15.0% |
| !! | CTTAACAAATAATATCTAAA+GGG | + | chr5.3:18977668-18977687 | None:intergenic | 15.0% |
| !! | GAATAAAAAATCATATGAAT+AGG | - | chr5.3:18977711-18977730 | MS.gene036310:intron | 15.0% |
| !! | TTATAACATTAAAATTGTTG+AGG | + | chr5.3:18976867-18976886 | None:intergenic | 15.0% |
| !!! | ATGAATAATATCTAAAACAT+AGG | + | chr5.3:18974642-18974661 | None:intergenic | 15.0% |
| !!! | ATTAAAGATTTTTTTCAACA+AGG | + | chr5.3:18975747-18975766 | None:intergenic | 15.0% |
| !!! | ATTAAGAAGATTCATTATTT+TGG | + | chr5.3:18973895-18973914 | None:intergenic | 15.0% |
| !!! | ATTTTGATTTTTGTATCTTT+AGG | - | chr5.3:18975969-18975988 | MS.gene036310:CDS | 15.0% |
| !!! | TGTTTCTTTTTCATAATTTT+GGG | - | chr5.3:18976405-18976424 | MS.gene036310:intron | 15.0% |
| !! | AAATAATCTTATCACCTAAA+AGG | - | chr5.3:18974997-18975016 | MS.gene036310:intron | 20.0% |
| !! | AATAATCTTATCACCTAAAA+GGG | - | chr5.3:18974998-18975017 | MS.gene036310:intron | 20.0% |
| !! | AGATAAATGTAGAAAAGTAA+AGG | + | chr5.3:18976328-18976347 | None:intergenic | 20.0% |
| !! | AGTAAAAAACTTCATGTTTA+TGG | + | chr5.3:18977130-18977149 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAATAGATGCG+AGG | + | chr5.3:18973837-18973856 | None:intergenic | 20.0% |
| !! | ATACAGAAAAGAAACTAAAA+TGG | + | chr5.3:18975111-18975130 | None:intergenic | 20.0% |
| !! | ATATTCATTTCATTCAACTT+CGG | + | chr5.3:18975220-18975239 | None:intergenic | 20.0% |
| !! | CAACAAATATAGAAAATAAG+AGG | + | chr5.3:18974738-18974757 | None:intergenic | 20.0% |
| !! | CATAAAAGTTGAATAAGATA+TGG | + | chr5.3:18975257-18975276 | None:intergenic | 20.0% |
| !! | CCTTAACAAATAATATCTAA+AGG | + | chr5.3:18977669-18977688 | None:intergenic | 20.0% |
| !! | GTTTAAAGATTATAGACTAA+TGG | + | chr5.3:18975939-18975958 | None:intergenic | 20.0% |
| !! | TAAGACTCAATAATATTCTT+TGG | - | chr5.3:18976069-18976088 | MS.gene036310:intron | 20.0% |
| !! | TACTAAAATGTAAAAACTAG+AGG | - | chr5.3:18974871-18974890 | MS.gene036310:intron | 20.0% |
| !! | TCAAATAGTCAAATATAGTT+TGG | + | chr5.3:18976105-18976124 | None:intergenic | 20.0% |
| !! | TCAATAATATTCTTTGGATT+TGG | - | chr5.3:18976075-18976094 | MS.gene036310:intron | 20.0% |
| !! | TTATTTATGTTATGAACTTC+TGG | + | chr5.3:18974983-18975002 | None:intergenic | 20.0% |
| !! | TTGAGACAATTTGATATTAA+TGG | - | chr5.3:18975711-18975730 | MS.gene036310:intron | 20.0% |
| !!! | AAAACATATGTTAATTTGGT+TGG | - | chr5.3:18974825-18974844 | MS.gene036310:intron | 20.0% |
| !!! | AAACATATGTTAATTTGGTT+GGG | - | chr5.3:18974826-18974845 | MS.gene036310:intron | 20.0% |
| !!! | AACCAAATTAACATATGTTT+TGG | + | chr5.3:18974826-18974845 | None:intergenic | 20.0% |
| !!! | AACTAAAATGGACATTTTAA+AGG | + | chr5.3:18975099-18975118 | None:intergenic | 20.0% |
| !!! | ATTATTGAGTCTTATTTATG+TGG | + | chr5.3:18976063-18976082 | None:intergenic | 20.0% |
| !!! | CCTTTAGATATTATTTGTTA+AGG | - | chr5.3:18977666-18977685 | MS.gene036310:intron | 20.0% |
| !!! | GTGTTTCTTTTTCATAATTT+TGG | - | chr5.3:18976404-18976423 | MS.gene036310:intron | 20.0% |
| !!! | TAATCAAAAATCCGATTTTA+AGG | + | chr5.3:18976374-18976393 | None:intergenic | 20.0% |
| !!! | TAGAATGCTTAATTTTTACT+TGG | - | chr5.3:18977786-18977805 | MS.gene036310:intron | 20.0% |
| !!! | TATCTTATTCAACTTTTATG+TGG | - | chr5.3:18975257-18975276 | MS.gene036310:intron | 20.0% |
| !!! | TGTTCAAGATATGTATTTTA+TGG | - | chr5.3:18976015-18976034 | MS.gene036310:intron | 20.0% |
| ! | AAAATGGAAAAAGAAGAAGA+AGG | + | chr5.3:18973289-18973308 | None:intergenic | 25.0% |
| ! | AAATGGAAAAAGAAGAAGAA+GGG | + | chr5.3:18973288-18973307 | None:intergenic | 25.0% |
| ! | AACTTGAAAAATGTCAAGAA+AGG | - | chr5.3:18974439-18974458 | MS.gene036310:intron | 25.0% |
| ! | AATTATGAAAAAGAAACACG+TGG | + | chr5.3:18976403-18976422 | None:intergenic | 25.0% |
| ! | AGTAAAGAATGAAACCAAAT+AGG | + | chr5.3:18977886-18977905 | None:intergenic | 25.0% |
| ! | ATAGACTAATGGTGTAAAAA+CGG | + | chr5.3:18975928-18975947 | None:intergenic | 25.0% |
| ! | ATATAAGTATACAACCTTTG+TGG | - | chr5.3:18976207-18976226 | MS.gene036310:intron | 25.0% |
| ! | ATTATATCACACTTCTTTGA+GGG | + | chr5.3:18974938-18974957 | None:intergenic | 25.0% |
| ! | ATTGTGTAATTTGGAGAAAT+GGG | - | chr5.3:18973685-18973704 | MS.gene036310:intron | 25.0% |
| ! | CATATGTAAATAAATAGCAG+AGG | + | chr5.3:18975640-18975659 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGTTAAAGAAGC+TGG | - | chr5.3:18978055-18978074 | MS.gene036310:CDS | 25.0% |
| ! | GTAAAGAATGAAACCAAATA+GGG | + | chr5.3:18977885-18977904 | None:intergenic | 25.0% |
| ! | TAAATATTACTGCTCTATGA+GGG | - | chr5.3:18977186-18977205 | MS.gene036310:intron | 25.0% |
| ! | TAATATTCTTTGGATTTGGA+TGG | - | chr5.3:18976079-18976098 | MS.gene036310:intron | 25.0% |
| ! | TACAATGAATTTGGTTATGT+TGG | - | chr5.3:18977362-18977381 | MS.gene036310:intron | 25.0% |
| ! | TACTACATGATTGTGTAATT+TGG | - | chr5.3:18973676-18973695 | MS.gene036310:intron | 25.0% |
| ! | TGCCAAAACATATGTTAATT+TGG | - | chr5.3:18974821-18974840 | MS.gene036310:intron | 25.0% |
| ! | TTAAATATTACTGCTCTATG+AGG | - | chr5.3:18977185-18977204 | MS.gene036310:intron | 25.0% |
| ! | TTATTAGTGCTTTGATATGT+CGG | + | chr5.3:18976263-18976282 | None:intergenic | 25.0% |
| ! | TTGTTGTGATACAATGAATT+TGG | - | chr5.3:18977353-18977372 | MS.gene036310:intron | 25.0% |
| ! | TTTAATGACATCTTATTGTG+TGG | - | chr5.3:18975287-18975306 | MS.gene036310:intron | 25.0% |
| !! | AAACTTCATGTTTATGGTTT+TGG | + | chr5.3:18977124-18977143 | None:intergenic | 25.0% |
| !! | AGGTTATACATTTGTTACTA+TGG | - | chr5.3:18973758-18973777 | MS.gene036310:intron | 25.0% |
| !! | ATTTATGTGTTTAAGACATG+CGG | + | chr5.3:18976677-18976696 | None:intergenic | 25.0% |
| !! | CTTAATTTTTACTTGGATTG+TGG | - | chr5.3:18977793-18977812 | MS.gene036310:intron | 25.0% |
| !! | TAATAGTCTAAATCCCTTTT+AGG | + | chr5.3:18975014-18975033 | None:intergenic | 25.0% |
| !! | TGGATTTGTTTCTTATCATA+CGG | - | chr5.3:18975542-18975561 | MS.gene036310:intron | 25.0% |
| !!! | GTTCATTTTTATACACAACT+TGG | - | chr5.3:18977818-18977837 | MS.gene036310:CDS | 25.0% |
| !!! | TGGTTGATAATATGAGATAA+AGG | + | chr5.3:18974111-18974130 | None:intergenic | 25.0% |
| AAGAAGAAAAGTGAAGTTTG+TGG | + | chr5.3:18973324-18973343 | None:intergenic | 30.0% | |
| ACACATAAATTGCATTTGCA+TGG | - | chr5.3:18976687-18976706 | MS.gene036310:intron | 30.0% | |
| ACTCTAGTGATCCTTAAAAT+CGG | - | chr5.3:18976360-18976379 | MS.gene036310:intron | 30.0% | |
| AGATTGTAAAGAGCAAAGAT+GGG | - | chr5.3:18973727-18973746 | MS.gene036310:intron | 30.0% | |
| AGTTATCATCTCATTGTTCA+TGG | - | chr5.3:18975608-18975627 | MS.gene036310:intron | 30.0% | |
| ATATTGGTGCAGAAAAATAC+TGG | + | chr5.3:18976464-18976483 | None:intergenic | 30.0% | |
| ATGACATGATTAAGAGTTTG+TGG | - | chr5.3:18973635-18973654 | MS.gene036310:intron | 30.0% | |
| ATTTGACTATTTGAGTGTCT+AGG | - | chr5.3:18976111-18976130 | MS.gene036310:intron | 30.0% | |
| CTGTGAAGTTTAGTTATTTG+AGG | - | chr5.3:18974781-18974800 | MS.gene036310:intron | 30.0% | |
| GATGAAATGTTTATGAAGCA+TGG | - | chr5.3:18974175-18974194 | MS.gene036310:intron | 30.0% | |
| GATTATATCACACTTCTTTG+AGG | + | chr5.3:18974939-18974958 | None:intergenic | 30.0% | |
| GATTGTGTAATTTGGAGAAA+TGG | - | chr5.3:18973684-18973703 | MS.gene036310:intron | 30.0% | |
| GCTTCATAAACATTTCATCT+GGG | + | chr5.3:18974174-18974193 | None:intergenic | 30.0% | |
| GGAGATATAAAGGCTAAATA+TGG | - | chr5.3:18976228-18976247 | MS.gene036310:intron | 30.0% | |
| TAATAACCAATTGAGGCTTA+TGG | - | chr5.3:18977565-18977584 | MS.gene036310:CDS | 30.0% | |
| TAGATTGTAAAGAGCAAAGA+TGG | - | chr5.3:18973726-18973745 | MS.gene036310:intron | 30.0% | |
| TATGAATAGGCTTGTCTTTA+AGG | - | chr5.3:18977724-18977743 | MS.gene036310:intron | 30.0% | |
| TCCAAAATGATGTGATTCTT+TGG | + | chr5.3:18973963-18973982 | None:intergenic | 30.0% | |
| TGCTTCATAAACATTTCATC+TGG | + | chr5.3:18974175-18974194 | None:intergenic | 30.0% | |
| TTCAACTGTATGAATGAAAC+TGG | - | chr5.3:18977950-18977969 | MS.gene036310:CDS | 30.0% | |
| TTGATGTGTGAATACAGTTA+TGG | + | chr5.3:18973188-18973207 | None:intergenic | 30.0% | |
| TTTGAATGATTGTTAAGCTC+AGG | - | chr5.3:18976577-18976596 | MS.gene036310:intron | 30.0% | |
| ! | ACATTTGTTACTATGGATTC+AGG | - | chr5.3:18973765-18973784 | MS.gene036310:intron | 30.0% |
| ! | ACCAAAGAATCACATCATTT+TGG | - | chr5.3:18973959-18973978 | MS.gene036310:intron | 30.0% |
| ! | ACCACTTACTCTTTTGATAT+AGG | - | chr5.3:18977307-18977326 | MS.gene036310:intron | 30.0% |
| ! | AGATTCAGAATCAAGAGTAT+TGG | + | chr5.3:18974612-18974631 | None:intergenic | 30.0% |
| ! | ATTTGTTTCTTATCATACGG+AGG | - | chr5.3:18975545-18975564 | MS.gene036310:intron | 30.0% |
| !! | AAGAAGCATCTGTATATTCA+GGG | - | chr5.3:18976805-18976824 | MS.gene036310:intron | 30.0% |
| !! | CTGGTGATTTTGATAAGAAA+TGG | + | chr5.3:18973234-18973253 | None:intergenic | 30.0% |
| !! | GTATTTTTGTCTGTTCTGAA+TGG | - | chr5.3:18973864-18973883 | MS.gene036310:intron | 30.0% |
| !! | GTTTAAAACAAAAGCACCAT+TGG | + | chr5.3:18976547-18976566 | None:intergenic | 30.0% |
| !! | TAATTTTGGGTCAGAGTAAA+TGG | - | chr5.3:18976418-18976437 | MS.gene036310:intron | 30.0% |
| !! | TTTTACTGGCTAACATGATT+TGG | - | chr5.3:18974301-18974320 | MS.gene036310:intron | 30.0% |
| !!! | TCACTTATTTTTACGAGAAG+TGG | + | chr5.3:18978037-18978056 | None:intergenic | 30.0% |
| !!! | TGGTGCTTTTGTTTTAAACT+AGG | - | chr5.3:18976548-18976567 | MS.gene036310:intron | 30.0% |
| AATAGGGATACACACAATGA+CGG | + | chr5.3:18977869-18977888 | None:intergenic | 35.0% | |
| ACACCATTGTGAGATATGAT+TGG | - | chr5.3:18975889-18975908 | MS.gene036310:CDS | 35.0% | |
| ACTTGCGAAATGTTGCATTT+GGG | - | chr5.3:18976512-18976531 | MS.gene036310:intron | 35.0% | |
| AGGATGCATGATTTCTTGTT+TGG | - | chr5.3:18977686-18977705 | MS.gene036310:intron | 35.0% | |
| AGTTGAAGCATGGAGTTTAA+TGG | + | chr5.3:18973260-18973279 | None:intergenic | 35.0% | |
| ATTACATAACGAGCTTCCTT+AGG | + | chr5.3:18975396-18975415 | None:intergenic | 35.0% | |
| ATTGTTAAGCTCAGGTATGT+AGG | - | chr5.3:18976585-18976604 | MS.gene036310:intron | 35.0% | |
| CAACCTTTGTGGAGATATAA+AGG | - | chr5.3:18976218-18976237 | MS.gene036310:intron | 35.0% | |
| CAAGCTAAGTGAAAATCAGA+AGG | + | chr5.3:18976296-18976315 | None:intergenic | 35.0% | |
| CAATTGAGGCTTATGGAAAA+GGG | - | chr5.3:18977572-18977591 | MS.gene036310:CDS | 35.0% | |
| CTCTAGCAAAAAACTTCCAA+CGG | - | chr5.3:18975140-18975159 | MS.gene036310:intron | 35.0% | |
| CTTCAGAACAAACAAACAAG+AGG | + | chr5.3:18977922-18977941 | None:intergenic | 35.0% | |
| CTTCCAATCATATCTCACAA+TGG | + | chr5.3:18975895-18975914 | None:intergenic | 35.0% | |
| GCCTATATCAAAAGAGTAAG+TGG | + | chr5.3:18977311-18977330 | None:intergenic | 35.0% | |
| GTATCTTTAGGCAGAACTTT+AGG | - | chr5.3:18975981-18976000 | MS.gene036310:CDS | 35.0% | |
| GTGGATATTGTGAGAGAAAA+TGG | + | chr5.3:18973305-18973324 | None:intergenic | 35.0% | |
| GTGTCTCGTAGTTGAAAATT+GGG | - | chr5.3:18977430-18977449 | MS.gene036310:intron | 35.0% | |
| TAGCCTTTATATCTCCACAA+AGG | + | chr5.3:18976224-18976243 | None:intergenic | 35.0% | |
| TCATTGTGTGTATCCCTATT+TGG | - | chr5.3:18977869-18977888 | MS.gene036310:CDS | 35.0% | |
| TGATCACCGTGAAAACATAT+TGG | + | chr5.3:18976480-18976499 | None:intergenic | 35.0% | |
| TGCAGGCATGTTAAAATCAT+CGG | + | chr5.3:18977407-18977426 | None:intergenic | 35.0% | |
| TGTCTAGGTTATAGCTGAAT+TGG | - | chr5.3:18976126-18976145 | MS.gene036310:intron | 35.0% | |
| TGTGTCTCGTAGTTGAAAAT+TGG | - | chr5.3:18977429-18977448 | MS.gene036310:intron | 35.0% | |
| ! | AGGCTTGAATTTTGCAAACA+AGG | - | chr5.3:18977327-18977346 | MS.gene036310:intron | 35.0% |
| ! | AGTGACATAACTTCCCTTTT+AGG | + | chr5.3:18975052-18975071 | None:intergenic | 35.0% |
| ! | ATATGTTTTCACGGTGATCA+TGG | - | chr5.3:18976480-18976499 | MS.gene036310:intron | 35.0% |
| ! | GATACAGTAGCATTTTCCAA+AGG | + | chr5.3:18976613-18976632 | None:intergenic | 35.0% |
| ! | TAGACAAGAAATGAGAGTGT+TGG | + | chr5.3:18974268-18974287 | None:intergenic | 35.0% |
| ! | TCTGCACCAATATGTTTTCA+CGG | - | chr5.3:18976471-18976490 | MS.gene036310:intron | 35.0% |
| ! | TGTTAATTTGGTTGGGACTA+TGG | - | chr5.3:18974833-18974852 | MS.gene036310:intron | 35.0% |
| !! | AGAAGCATCTGTATATTCAG+GGG | - | chr5.3:18976806-18976825 | MS.gene036310:intron | 35.0% |
| !! | ATTTGGGTTGCAATTTCCAA+TGG | - | chr5.3:18976528-18976547 | MS.gene036310:intron | 35.0% |
| !! | GAAGAAGCATCTGTATATTC+AGG | - | chr5.3:18976804-18976823 | MS.gene036310:intron | 35.0% |
| !! | GTATTTCATGCGGTTTTGAT+GGG | - | chr5.3:18977275-18977294 | MS.gene036310:intron | 35.0% |
| !! | GTTTTGAGTGGTTGGATATA+CGG | - | chr5.3:18976158-18976177 | MS.gene036310:intron | 35.0% |
| !! | TTCAGAATCAAGAGTATTGG+AGG | + | chr5.3:18974609-18974628 | None:intergenic | 35.0% |
| !! | TTTGTAGTGTTTTGAGTGGT+TGG | - | chr5.3:18976150-18976169 | MS.gene036310:intron | 35.0% |
| !! | TTTTTGTCTGTTCTGAATGG+TGG | - | chr5.3:18973867-18973886 | MS.gene036310:intron | 35.0% |
| !!! | ATGGTTTTGGTTGAATCAGA+GGG | + | chr5.3:18977111-18977130 | None:intergenic | 35.0% |
| !!! | TATGGTTTTGGTTGAATCAG+AGG | + | chr5.3:18977112-18977131 | None:intergenic | 35.0% |
| !!! | TCACATCATTTTGGAACTCT+TGG | - | chr5.3:18973968-18973987 | MS.gene036310:intron | 35.0% |
| !!! | TGGTTTTGTAGTGTTTTGAG+TGG | - | chr5.3:18976146-18976165 | MS.gene036310:intron | 35.0% |
| AAAATGAGTTTCCATGGGTC+AGG | + | chr5.3:18976892-18976911 | None:intergenic | 40.0% | |
| AAAGGAGTTGCGAGTCATAA+GGG | + | chr5.3:18974093-18974112 | None:intergenic | 40.0% | |
| AAATACCGCCAATAGGAACA+AGG | + | chr5.3:18977261-18977280 | None:intergenic | 40.0% | |
| AAATATCAGGCCGGATAGTA+AGG | - | chr5.3:18975316-18975335 | MS.gene036310:intron | 40.0% | |
| AAATGAGTTTCCATGGGTCA+GGG | + | chr5.3:18976891-18976910 | None:intergenic | 40.0% | |
| AAGGCAAGTTAAAGACAACG+AGG | + | chr5.3:18973459-18973478 | None:intergenic | 40.0% | |
| AAGGGATTGAAGTTGAAGCA+TGG | + | chr5.3:18973270-18973289 | None:intergenic | 40.0% | |
| AATATCAGGCCGGATAGTAA+GGG | - | chr5.3:18975317-18975336 | MS.gene036310:intron | 40.0% | |
| ACACGCAAAATGAGTTTCCA+TGG | + | chr5.3:18976898-18976917 | None:intergenic | 40.0% | |
| ACTCAACTATGCCTTGGTAA+AGG | - | chr5.3:18974337-18974356 | MS.gene036310:intron | 40.0% | |
| AGATGGTCAATGACACATGT+TGG | + | chr5.3:18977013-18977032 | None:intergenic | 40.0% | |
| AGCTTCAATAACACACTTGG+GGG | + | chr5.3:18977846-18977865 | None:intergenic | 40.0% | |
| AGGTGTTAGAGACTCTAATG+TGG | - | chr5.3:18974213-18974232 | MS.gene036310:intron | 40.0% | |
| AGTAAGGGTAGAGTTTGCAA+AGG | - | chr5.3:18975332-18975351 | MS.gene036310:intron | 40.0% | |
| ATACGTGACTAATACGGCTA+TGG | - | chr5.3:18977456-18977475 | MS.gene036310:intron | 40.0% | |
| ATGTTATAATCCCTGACCCA+TGG | - | chr5.3:18976878-18976897 | MS.gene036310:intron | 40.0% | |
| CAAACTCTACCCTTACTATC+CGG | + | chr5.3:18975329-18975348 | None:intergenic | 40.0% | |
| CACACATGTATGTATTTCGG+GGG | - | chr5.3:18974517-18974536 | MS.gene036310:intron | 40.0% | |
| CACGCAAAATGAGTTTCCAT+GGG | + | chr5.3:18976897-18976916 | None:intergenic | 40.0% | |
| CACTTGCGAAATGTTGCATT+TGG | - | chr5.3:18976511-18976530 | MS.gene036310:intron | 40.0% | |
| CAGAGCTTCTTAGGGATATA+GGG | - | chr5.3:18976829-18976848 | MS.gene036310:intron | 40.0% | |
| CATGGCGAGAAAAAATTGGA+TGG | + | chr5.3:18975826-18975845 | None:intergenic | 40.0% | |
| CCAATTGAGGCTTATGGAAA+AGG | - | chr5.3:18977571-18977590 | MS.gene036310:CDS | 40.0% | |
| CCACACATGTATGTATTTCG+GGG | - | chr5.3:18974516-18974535 | MS.gene036310:intron | 40.0% | |
| CCCACACATGTATGTATTTC+GGG | - | chr5.3:18974515-18974534 | MS.gene036310:intron | 40.0% | |
| CCCCACACATGTATGTATTT+CGG | - | chr5.3:18974514-18974533 | MS.gene036310:intron | 40.0% | |
| CCCGAAATACATACATGTGT+GGG | + | chr5.3:18974518-18974537 | None:intergenic | 40.0% | |
| CCGAAATACATACATGTGTG+GGG | + | chr5.3:18974517-18974536 | None:intergenic | 40.0% | |
| CGAAATACATACATGTGTGG+GGG | + | chr5.3:18974516-18974535 | None:intergenic | 40.0% | |
| GACATAGACTGTGCAATGAA+AGG | - | chr5.3:18973919-18973938 | MS.gene036310:intron | 40.0% | |
| GACATCTTATTGTGTGGTTC+AGG | - | chr5.3:18975293-18975312 | MS.gene036310:intron | 40.0% | |
| GAGCTTCAATAACACACTTG+GGG | + | chr5.3:18977847-18977866 | None:intergenic | 40.0% | |
| GATGCTTCTTCTAACTCCTT+CGG | + | chr5.3:18976795-18976814 | None:intergenic | 40.0% | |
| GATTCATGTGTCCTTTACCA+AGG | + | chr5.3:18974351-18974370 | None:intergenic | 40.0% | |
| GCATGGAGTTTAATGGAATC+TGG | + | chr5.3:18973253-18973272 | None:intergenic | 40.0% | |
| GCGTGAGTAATAACCAATTG+AGG | - | chr5.3:18977558-18977577 | MS.gene036310:CDS | 40.0% | |
| GCTACATGGCGAGAAAAAAT+TGG | + | chr5.3:18975830-18975849 | None:intergenic | 40.0% | |
| GGAGCTTCAATAACACACTT+GGG | + | chr5.3:18977848-18977867 | None:intergenic | 40.0% | |
| GTAAAGAGCAAAGATGGGAA+GGG | - | chr5.3:18973732-18973751 | MS.gene036310:intron | 40.0% | |
| GTAAGGGTAGAGTTTGCAAA+GGG | - | chr5.3:18975333-18975352 | MS.gene036310:intron | 40.0% | |
| GTTTGTGTTAGTGTTGTGTC+TGG | - | chr5.3:18974670-18974689 | MS.gene036310:intron | 40.0% | |
| TAAAATTGTTGAGGTGACCG+CGG | + | chr5.3:18976858-18976877 | None:intergenic | 40.0% | |
| TAAAGGAGTTGCGAGTCATA+AGG | + | chr5.3:18974094-18974113 | None:intergenic | 40.0% | |
| TACCCTGAGAAATAGCTACA+TGG | + | chr5.3:18975844-18975863 | None:intergenic | 40.0% | |
| TACTGTATCACAATGACGCT+AGG | - | chr5.3:18976624-18976643 | MS.gene036310:intron | 40.0% | |
| TCTGCAATATGCCAGTGAAA+GGG | - | chr5.3:18977526-18977545 | MS.gene036310:CDS | 40.0% | |
| TCTTTCTAAGCCGGATATCA+AGG | - | chr5.3:18973483-18973502 | MS.gene036310:intron | 40.0% | |
| TGGAACTGTAATTGACGTTG+AGG | - | chr5.3:18973522-18973541 | MS.gene036310:intron | 40.0% | |
| TGGATGCATCATAAGGAGTT+GGG | - | chr5.3:18977499-18977518 | MS.gene036310:intron | 40.0% | |
| TGTAAAGAGCAAAGATGGGA+AGG | - | chr5.3:18973731-18973750 | MS.gene036310:intron | 40.0% | |
| TGTGTGGTTCAGGAAATATC+AGG | - | chr5.3:18975303-18975322 | MS.gene036310:intron | 40.0% | |
| TGTTACTATGGATTCAGGAG+AGG | - | chr5.3:18973770-18973789 | MS.gene036310:intron | 40.0% | |
| TGTTTCTTATCATACGGAGG+AGG | - | chr5.3:18975548-18975567 | MS.gene036310:intron | 40.0% | |
| TTGGTGCAGAAAAATACTGG+TGG | + | chr5.3:18976461-18976480 | None:intergenic | 40.0% | |
| TTTGACACTCAACTATGCCT+TGG | - | chr5.3:18974331-18974350 | MS.gene036310:intron | 40.0% | |
| TTTGGCATAGCATGTTCAAC+TGG | + | chr5.3:18974808-18974827 | None:intergenic | 40.0% | |
| ! | AAGTGAAAATCAGAAGGTGC+TGG | + | chr5.3:18976290-18976309 | None:intergenic | 40.0% |
| ! | CCTTTTCCATAAGCCTCAAT+TGG | + | chr5.3:18977574-18977593 | None:intergenic | 40.0% |
| !! | GAGTGTTTTGGATTTGGAAG+AGG | + | chr5.3:18973347-18973366 | None:intergenic | 40.0% |
| !! | GCTATTTCTCAGGGTAGTTT+AGG | - | chr5.3:18975848-18975867 | MS.gene036310:CDS | 40.0% |
| !! | GGTATTTCATGCGGTTTTGA+TGG | - | chr5.3:18977274-18977293 | MS.gene036310:intron | 40.0% |
| !! | GTAGCAGAGTGTTTTGGATT+TGG | + | chr5.3:18973353-18973372 | None:intergenic | 40.0% |
| !! | TAAAGCGTAGCAGAGTGTTT+TGG | + | chr5.3:18973359-18973378 | None:intergenic | 40.0% |
| !! | TCGTTGTCTTTAACTTGCCT+TGG | - | chr5.3:18973458-18973477 | MS.gene036310:intron | 40.0% |
| AAAGGGTGGGAACAAAGGTT+TGG | - | chr5.3:18977589-18977608 | MS.gene036310:CDS | 45.0% | |
| AAGGAGTTGCGAGTCATAAG+GGG | + | chr5.3:18974092-18974111 | None:intergenic | 45.0% | |
| AAGGATCTCTTCGCTCAATG+TGG | - | chr5.3:18973502-18973521 | MS.gene036310:intron | 45.0% | |
| ACTCTGCTACGCTTTACAAG+AGG | - | chr5.3:18973363-18973382 | MS.gene036310:intron | 45.0% | |
| ACTTCTTCACTTCCAGCTTC+TGG | + | chr5.3:18978118-18978137 | None:intergenic | 45.0% | |
| AGAGGAGAGGCAGATTCAAA+GGG | + | chr5.3:18977063-18977082 | None:intergenic | 45.0% | |
| AGCAAAGATGGGAAGGGAAA+AGG | - | chr5.3:18973738-18973757 | MS.gene036310:intron | 45.0% | |
| AGCCTGAATTTCATCACCGA+AGG | - | chr5.3:18976776-18976795 | MS.gene036310:intron | 45.0% | |
| AGCTTCTTAGGGATATAGGG+TGG | - | chr5.3:18976832-18976851 | MS.gene036310:intron | 45.0% | |
| AGGCAGATTCAAAGGGAGAA+CGG | + | chr5.3:18977056-18977075 | None:intergenic | 45.0% | |
| AGTAACTCCTGCAAAGGGAT+AGG | + | chr5.3:18978007-18978026 | None:intergenic | 45.0% | |
| ATAACGAGCTTCCTTAGGAG+TGG | + | chr5.3:18975391-18975410 | None:intergenic | 45.0% | |
| ATCCCTTTGCAGGAGTTACT+TGG | - | chr5.3:18978007-18978026 | MS.gene036310:CDS | 45.0% | |
| ATGAAGCACGAAGACAACTG+TGG | + | chr5.3:18974699-18974718 | None:intergenic | 45.0% | |
| ATGCATCATAAGGAGTTGGG+AGG | - | chr5.3:18977502-18977521 | MS.gene036310:intron | 45.0% | |
| ATGGAAAAGGGTGGGAACAA+AGG | - | chr5.3:18977584-18977603 | MS.gene036310:CDS | 45.0% | |
| CAAAACACCAGTTTCAGCCA+GGG | - | chr5.3:18975482-18975501 | MS.gene036310:intron | 45.0% | |
| CATTTCTGCTTTGCAAGGGA+AGG | - | chr5.3:18975584-18975603 | MS.gene036310:intron | 45.0% | |
| CCCCGAAATACATACATGTG+TGG | + | chr5.3:18974519-18974538 | None:intergenic | 45.0% | |
| CCTATTGGCGGTATTTCATG+CGG | - | chr5.3:18977265-18977284 | MS.gene036310:intron | 45.0% | |
| CGGAGCTTCAATAACACACT+TGG | + | chr5.3:18977849-18977868 | None:intergenic | 45.0% | |
| CTCCTTCGGTGATGAAATTC+AGG | + | chr5.3:18976781-18976800 | None:intergenic | 45.0% | |
| CTTCCCTTGCAAAGCAGAAA+TGG | + | chr5.3:18975586-18975605 | None:intergenic | 45.0% | |
| GAAGTTATGTCACTCTGCAG+TGG | - | chr5.3:18975058-18975077 | MS.gene036310:intron | 45.0% | |
| GAGTCTCTAACACCTCAAGA+AGG | + | chr5.3:18974208-18974227 | None:intergenic | 45.0% | |
| GCAGAGCTTCTTAGGGATAT+AGG | - | chr5.3:18976828-18976847 | MS.gene036310:intron | 45.0% | |
| GCGAAGAGATCCTTGATATC+CGG | + | chr5.3:18973496-18973515 | None:intergenic | 45.0% | |
| GCTAATGCTTTCCCTTTCAC+TGG | + | chr5.3:18977540-18977559 | None:intergenic | 45.0% | |
| GGCTATGGTGGTAAGAATGT+GGG | - | chr5.3:18977471-18977490 | MS.gene036310:intron | 45.0% | |
| GGGTGCATACGTGACTAATA+CGG | - | chr5.3:18977450-18977469 | MS.gene036310:intron | 45.0% | |
| GTCCAAGTAACTCCTGCAAA+GGG | + | chr5.3:18978012-18978031 | None:intergenic | 45.0% | |
| GTCTGCAATATGCCAGTGAA+AGG | - | chr5.3:18977525-18977544 | MS.gene036310:CDS | 45.0% | |
| GTGGATGCATCATAAGGAGT+TGG | - | chr5.3:18977498-18977517 | MS.gene036310:intron | 45.0% | |
| TAACGAGCTTCCTTAGGAGT+GGG | + | chr5.3:18975390-18975409 | None:intergenic | 45.0% | |
| TACTATGGATTCAGGAGAGG+AGG | - | chr5.3:18973773-18973792 | MS.gene036310:intron | 45.0% | |
| TAGATCTTGCTTTCCACGCA+AGG | + | chr5.3:18975431-18975450 | None:intergenic | 45.0% | |
| TCAAAACACCAGTTTCAGCC+AGG | - | chr5.3:18975481-18975500 | MS.gene036310:intron | 45.0% | |
| TCCTGCAAAGGGATAGGTAA+CGG | + | chr5.3:18978001-18978020 | None:intergenic | 45.0% | |
| TGAGGCTTATGGAAAAGGGT+GGG | - | chr5.3:18977576-18977595 | MS.gene036310:CDS | 45.0% | |
| TGCATCATAAGGAGTTGGGA+GGG | - | chr5.3:18977503-18977522 | MS.gene036310:intron | 45.0% | |
| TGGAGCTTAGTTTAGTCCGT+TGG | + | chr5.3:18975159-18975178 | None:intergenic | 45.0% | |
| TGGTTCAGGAAATATCAGGC+CGG | - | chr5.3:18975307-18975326 | MS.gene036310:intron | 45.0% | |
| TGTTCTAACTTTCGCTGCAG+TGG | - | chr5.3:18977619-18977638 | MS.gene036310:intron | 45.0% | |
| TTGAGGCTTATGGAAAAGGG+TGG | - | chr5.3:18977575-18977594 | MS.gene036310:CDS | 45.0% | |
| TTGTCTTTCAAACCCCTGGT+GGG | - | chr5.3:18975505-18975524 | MS.gene036310:intron | 45.0% | |
| ! | CGAAGCATCATCTCTATTCC+TGG | + | chr5.3:18975179-18975198 | None:intergenic | 45.0% |
| ! | CTGCCATTTCTGCTTTGCAA+GGG | - | chr5.3:18975580-18975599 | MS.gene036310:intron | 45.0% |
| ! | GCTCTATGAGGGTTTTGCTT+GGG | - | chr5.3:18977197-18977216 | MS.gene036310:intron | 45.0% |
| ! | TGCTCTATGAGGGTTTTGCT+TGG | - | chr5.3:18977196-18977215 | MS.gene036310:intron | 45.0% |
| !! | AACGGACTAAACTAAGCTCC+AGG | - | chr5.3:18975158-18975177 | MS.gene036310:intron | 45.0% |
| !! | CGCCATGTAGCTATTTCTCA+GGG | - | chr5.3:18975839-18975858 | MS.gene036310:CDS | 45.0% |
| !! | TCGCCATGTAGCTATTTCTC+AGG | - | chr5.3:18975838-18975857 | MS.gene036310:CDS | 45.0% |
| !!! | ATCTATTTTTATTTTATTTT+TGG | - | chr5.3:18973840-18973859 | MS.gene036310:intron | 5.0% |
| !!! | TAATTTAGAATTTTTTTTAA+AGG | - | chr5.3:18974005-18974024 | MS.gene036310:intron | 5.0% |
| AAGACAACCCTGGCTGAAAC+TGG | + | chr5.3:18975492-18975511 | None:intergenic | 50.0% | |
| ACAATGCAGCGCATACGCAA+AGG | + | chr5.3:18976983-18977002 | None:intergenic | 50.0% | |
| ACGCTAGGCGTCAATTGAGA+TGG | - | chr5.3:18976639-18976658 | MS.gene036310:intron | 50.0% | |
| ACTCTGCAGTGGCATGTAGT+AGG | - | chr5.3:18975069-18975088 | MS.gene036310:intron | 50.0% | |
| AGGGGTTTGAAAGACAACCC+TGG | + | chr5.3:18975502-18975521 | None:intergenic | 50.0% | |
| AGGGTTGTCTTTCAAACCCC+TGG | - | chr5.3:18975501-18975520 | MS.gene036310:intron | 50.0% | |
| ATCGCACACACAGAGCTAGA+TGG | + | chr5.3:18977030-18977049 | None:intergenic | 50.0% | |
| ATTCAGGGGCAGAGCTTCTT+AGG | - | chr5.3:18976820-18976839 | MS.gene036310:intron | 50.0% | |
| CAACTACGAGACACACTTGC+AGG | + | chr5.3:18977424-18977443 | None:intergenic | 50.0% | |
| CAATGCAGCGCATACGCAAA+GGG | + | chr5.3:18976982-18977001 | None:intergenic | 50.0% | |
| CACCGATACATGTACGCATG+TGG | - | chr5.3:18974242-18974261 | MS.gene036310:intron | 50.0% | |
| CAGAGGAGAGGCAGATTCAA+AGG | + | chr5.3:18977064-18977083 | None:intergenic | 50.0% | |
| CATGGCACTTCTCCTTCTTG+AGG | - | chr5.3:18974193-18974212 | MS.gene036310:intron | 50.0% | |
| CCGCATGAAATACCGCCAAT+AGG | + | chr5.3:18977268-18977287 | None:intergenic | 50.0% | |
| CGGCTATGGTGGTAAGAATG+TGG | - | chr5.3:18977470-18977489 | MS.gene036310:intron | 50.0% | |
| CGTCCAAGTAACTCCTGCAA+AGG | + | chr5.3:18978013-18978032 | None:intergenic | 50.0% | |
| CGTGACTAATACGGCTATGG+TGG | - | chr5.3:18977459-18977478 | MS.gene036310:intron | 50.0% | |
| CTCAGGTATGTAGGTGCCTT+TGG | - | chr5.3:18976594-18976613 | MS.gene036310:intron | 50.0% | |
| GCCTTGGTCTCTTTCTAAGC+CGG | - | chr5.3:18973474-18973493 | MS.gene036310:intron | 50.0% | |
| GGCCACATGCGTACATGTAT+CGG | + | chr5.3:18974247-18974266 | None:intergenic | 50.0% | |
| GGCGTCAATTGAGATGGAAG+TGG | - | chr5.3:18976645-18976664 | MS.gene036310:intron | 50.0% | |
| GTACATGAACCATGCAGCAC+AGG | + | chr5.3:18977087-18977106 | None:intergenic | 50.0% | |
| GTTGTCTTTCAAACCCCTGG+TGG | - | chr5.3:18975504-18975523 | MS.gene036310:intron | 50.0% | |
| TCCGGCTTAGAAAGAGACCA+AGG | + | chr5.3:18973478-18973497 | None:intergenic | 50.0% | |
| TCCGTTACCTATCCCTTTGC+AGG | - | chr5.3:18977997-18978016 | MS.gene036310:CDS | 50.0% | |
| TCGGGGGAATCACAAATCAG+AGG | - | chr5.3:18974533-18974552 | MS.gene036310:intron | 50.0% | |
| TCTAACTTTCGCTGCAGTGG+TGG | - | chr5.3:18977622-18977641 | MS.gene036310:intron | 50.0% | |
| TCTATGCATCCAACCTTGCG+TGG | - | chr5.3:18975415-18975434 | MS.gene036310:intron | 50.0% | |
| TCTTGCTTTCCACGCAAGGT+TGG | + | chr5.3:18975427-18975446 | None:intergenic | 50.0% | |
| TGGTAAGAATGTGGGCTTGG+TGG | - | chr5.3:18977479-18977498 | MS.gene036310:intron | 50.0% | |
| TGGTGGTAAGAATGTGGGCT+TGG | - | chr5.3:18977476-18977495 | MS.gene036310:intron | 50.0% | |
| TTCAGGGGCAGAGCTTCTTA+GGG | - | chr5.3:18976821-18976840 | MS.gene036310:intron | 50.0% | |
| ! | GCTGCCATTTCTGCTTTGCA+AGG | - | chr5.3:18975579-18975598 | MS.gene036310:intron | 50.0% |
| ! | TCTGCCTGCCTTGTTCCTAT+TGG | - | chr5.3:18977250-18977269 | MS.gene036310:intron | 50.0% |
| !! | GGCTTGGTGGATGCATCATA+AGG | - | chr5.3:18977492-18977511 | MS.gene036310:intron | 50.0% |
| ACCCAGCAGATTTCCCACCA+GGG | + | chr5.3:18975521-18975540 | None:intergenic | 55.0% | |
| ACCGCCAATAGGAACAAGGC+AGG | + | chr5.3:18977257-18977276 | None:intergenic | 55.0% | |
| AGGGACAGAGTGGTCATGAC+AGG | + | chr5.3:18976963-18976982 | None:intergenic | 55.0% | |
| ATCTGGGTTACACACCTCCC+TGG | + | chr5.3:18974158-18974177 | None:intergenic | 55.0% | |
| GCATACGCAAAGGGACAGAG+TGG | + | chr5.3:18976973-18976992 | None:intergenic | 55.0% | |
| GGTGGGAAATCTGCTGGGTA+TGG | - | chr5.3:18975522-18975541 | MS.gene036310:intron | 55.0% | |
| TACCCAGCAGATTTCCCACC+AGG | + | chr5.3:18975522-18975541 | None:intergenic | 55.0% | |
| TCTGGGTTACACACCTCCCT+GGG | + | chr5.3:18974157-18974176 | None:intergenic | 55.0% | |
| TTAGGGATATAGGGTGGCCG+CGG | - | chr5.3:18976838-18976857 | MS.gene036310:intron | 55.0% | |
| ! | GCCTGCCTTGTTCCTATTGG+CGG | - | chr5.3:18977253-18977272 | MS.gene036310:intron | 55.0% |
| ! | TAGACGGAGGGTGCAGTACT+GGG | + | chr5.3:18976924-18976943 | None:intergenic | 55.0% |
| ACCCCTGGTGGGAAATCTGC+TGG | - | chr5.3:18975516-18975535 | MS.gene036310:intron | 60.0% | |
| ACCCTTACGACTCCCTCCCA+GGG | - | chr5.3:18974138-18974157 | MS.gene036310:intron | 60.0% | |
| ACGCAGACGCAGTGGGTAGA+CGG | + | chr5.3:18976940-18976959 | None:intergenic | 60.0% | |
| AGACGCAGTGGGTAGACGGA+GGG | + | chr5.3:18976936-18976955 | None:intergenic | 60.0% | |
| AGGGAGTCGTAAGGGTGGCT+TGG | + | chr5.3:18974134-18974153 | None:intergenic | 60.0% | |
| ATGACAGGACGCAGACGCAG+TGG | + | chr5.3:18976948-18976967 | None:intergenic | 60.0% | |
| ATGCAGCACAGGCAGAGGAG+AGG | + | chr5.3:18977076-18977095 | None:intergenic | 60.0% | |
| CCCAGCAGATTTCCCACCAG+GGG | + | chr5.3:18975520-18975539 | None:intergenic | 60.0% | |
| CCCCTGGTGGGAAATCTGCT+GGG | - | chr5.3:18975517-18975536 | MS.gene036310:intron | 60.0% | |
| GAACCATGCAGCACAGGCAG+AGG | + | chr5.3:18977081-18977100 | None:intergenic | 60.0% | |
| GCTTCCTTAGGAGTGGGAGC+TGG | + | chr5.3:18975384-18975403 | None:intergenic | 60.0% | |
| GGATTCAGGAGAGGAGGCTC+AGG | - | chr5.3:18973779-18973798 | MS.gene036310:intron | 60.0% | |
| GGTTACACACCTCCCTGGGA+GGG | + | chr5.3:18974153-18974172 | None:intergenic | 60.0% | |
| TCCCTGGGAGGGAGTCGTAA+GGG | + | chr5.3:18974142-18974161 | None:intergenic | 60.0% | |
| TCCTCCAGCTCCCACTCCTA+AGG | - | chr5.3:18975377-18975396 | MS.gene036310:intron | 60.0% | |
| TCCTTAGGAGTGGGAGCTGG+AGG | + | chr5.3:18975381-18975400 | None:intergenic | 60.0% | |
| TCTCCTCTGCCTGTGCTGCA+TGG | - | chr5.3:18977075-18977094 | MS.gene036310:intron | 60.0% | |
| TGACAGGACGCAGACGCAGT+GGG | + | chr5.3:18976947-18976966 | None:intergenic | 60.0% | |
| TTAGGAGTGGGAGCTGGAGG+AGG | + | chr5.3:18975378-18975397 | None:intergenic | 60.0% | |
| ! | ACATACATGTGTGGGGGCGC+AGG | + | chr5.3:18974510-18974529 | None:intergenic | 60.0% |
| ! | AGACGGAGGGTGCAGTACTG+GGG | + | chr5.3:18976923-18976942 | None:intergenic | 60.0% |
| ! | CATACATGTGTGGGGGCGCA+GGG | + | chr5.3:18974509-18974528 | None:intergenic | 60.0% |
| ! | GAGTCGTAAGGGTGGCTTGG+TGG | + | chr5.3:18974131-18974150 | None:intergenic | 60.0% |
| ! | GTAGACGGAGGGTGCAGTAC+TGG | + | chr5.3:18976925-18976944 | None:intergenic | 60.0% |
| CACCCTTACGACTCCCTCCC+AGG | - | chr5.3:18974137-18974156 | MS.gene036310:intron | 65.0% | |
| CAGACGCAGTGGGTAGACGG+AGG | + | chr5.3:18976937-18976956 | None:intergenic | 65.0% | |
| CTCCCTGGGAGGGAGTCGTA+AGG | + | chr5.3:18974143-18974162 | None:intergenic | 65.0% | |
| CTGGGAGGGAGTCGTAAGGG+TGG | + | chr5.3:18974139-18974158 | None:intergenic | 65.0% | |
| CTTACGACTCCCTCCCAGGG+AGG | - | chr5.3:18974141-18974160 | MS.gene036310:intron | 65.0% | |
| GACGACGCGCAACCAGAAGC+TGG | - | chr5.3:18978103-18978122 | MS.gene036310:CDS | 65.0% | |
| GGGTTACACACCTCCCTGGG+AGG | + | chr5.3:18974154-18974173 | None:intergenic | 65.0% | |
| GGAGCTGGAGGAGGTGGAGG+AGG | + | chr5.3:18975369-18975388 | None:intergenic | 70.0% | |
| GGAGTGGGAGCTGGAGGAGG+TGG | + | chr5.3:18975375-18975394 | None:intergenic | 70.0% | |
| GTGGGAGCTGGAGGAGGTGG+AGG | + | chr5.3:18975372-18975391 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18973166 | 18978177 | 18973166 | ID=MS.gene036310 |
| chr5.3 | mRNA | 18973166 | 18978177 | 18973166 | ID=MS.gene036310.t1;Parent=MS.gene036310 |
| chr5.3 | exon | 18977800 | 18978177 | 18977800 | ID=MS.gene036310.t1.exon1;Parent=MS.gene036310.t1 |
| chr5.3 | CDS | 18977800 | 18978177 | 18977800 | ID=cds.MS.gene036310.t1;Parent=MS.gene036310.t1 |
| chr5.3 | exon | 18977516 | 18977614 | 18977516 | ID=MS.gene036310.t1.exon2;Parent=MS.gene036310.t1 |
| chr5.3 | CDS | 18977516 | 18977614 | 18977516 | ID=cds.MS.gene036310.t1;Parent=MS.gene036310.t1 |
| chr5.3 | exon | 18975738 | 18976028 | 18975738 | ID=MS.gene036310.t1.exon3;Parent=MS.gene036310.t1 |
| chr5.3 | CDS | 18975738 | 18976028 | 18975738 | ID=cds.MS.gene036310.t1;Parent=MS.gene036310.t1 |
| chr5.3 | exon | 18973166 | 18973324 | 18973166 | ID=MS.gene036310.t1.exon4;Parent=MS.gene036310.t1 |
| chr5.3 | CDS | 18973166 | 18973324 | 18973166 | ID=cds.MS.gene036310.t1;Parent=MS.gene036310.t1 |
| Gene Sequence |
| Protein sequence |
