Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039673.t1 | AES68818.1 | 84.3 | 402 | 39 | 2 | 1 | 400 | 1 | 380 | 4.50E-181 | 644 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039673.t1 | Q9S7T8 | 51.3 | 390 | 183 | 4 | 14 | 398 | 3 | 390 | 1.3e-107 | 391.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039673.t1 | G7IVY4 | 84.3 | 402 | 39 | 2 | 1 | 400 | 1 | 380 | 3.2e-181 | 644.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene039673 | PPI |
| MS.gene039673 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene039673 | PPI |
| MS.gene065945 | MS.gene039673 | PPI |
| MS.gene039673 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039673.t1 | MTR_3g015620 | 84.328 | 402 | 39 | 2 | 1 | 400 | 1 | 380 | 0.0 | 642 |
| MS.gene039673.t1 | MTR_3g018740 | 68.462 | 390 | 108 | 5 | 16 | 398 | 5 | 386 | 0.0 | 522 |
| MS.gene039673.t1 | MTR_3g101010 | 69.948 | 386 | 110 | 4 | 16 | 398 | 5 | 387 | 0.0 | 511 |
| MS.gene039673.t1 | MTR_8g027395 | 64.000 | 400 | 130 | 6 | 7 | 399 | 4 | 396 | 6.68e-176 | 496 |
| MS.gene039673.t1 | MTR_8g461160 | 67.005 | 394 | 112 | 6 | 16 | 398 | 6 | 392 | 1.79e-175 | 495 |
| MS.gene039673.t1 | MTR_3g101180 | 64.232 | 397 | 126 | 7 | 16 | 399 | 6 | 399 | 9.65e-170 | 481 |
| MS.gene039673.t1 | MTR_4g045707 | 63.990 | 386 | 131 | 4 | 16 | 398 | 6 | 386 | 7.08e-169 | 478 |
| MS.gene039673.t1 | MTR_7g451890 | 60.250 | 400 | 146 | 6 | 10 | 398 | 3 | 400 | 1.28e-166 | 473 |
| MS.gene039673.t1 | MTR_7g047780 | 61.364 | 396 | 141 | 6 | 11 | 398 | 9 | 400 | 1.28e-164 | 468 |
| MS.gene039673.t1 | MTR_3g101030 | 62.250 | 400 | 127 | 8 | 19 | 398 | 32 | 427 | 1.32e-164 | 469 |
| MS.gene039673.t1 | MTR_7g050750 | 59.799 | 398 | 144 | 6 | 11 | 398 | 3 | 394 | 9.62e-164 | 465 |
| MS.gene039673.t1 | MTR_7g050810 | 59.024 | 410 | 148 | 7 | 1 | 398 | 1 | 402 | 1.58e-162 | 462 |
| MS.gene039673.t1 | MTR_3g048000 | 60.442 | 407 | 125 | 7 | 6 | 399 | 8 | 391 | 8.13e-162 | 460 |
| MS.gene039673.t1 | MTR_3g101130 | 61.954 | 389 | 137 | 6 | 16 | 399 | 6 | 388 | 1.67e-161 | 459 |
| MS.gene039673.t1 | MTR_8g027420 | 63.049 | 387 | 122 | 6 | 16 | 399 | 6 | 374 | 2.41e-161 | 458 |
| MS.gene039673.t1 | MTR_2g046030 | 60.769 | 390 | 138 | 7 | 16 | 398 | 5 | 386 | 2.46e-161 | 459 |
| MS.gene039673.t1 | MTR_2g045980 | 61.282 | 390 | 136 | 7 | 16 | 398 | 5 | 386 | 5.23e-160 | 455 |
| MS.gene039673.t1 | MTR_4g088525 | 62.162 | 370 | 126 | 5 | 35 | 399 | 8 | 368 | 4.61e-157 | 447 |
| MS.gene039673.t1 | MTR_4g088535 | 60.724 | 387 | 126 | 7 | 16 | 399 | 7 | 370 | 1.72e-151 | 433 |
| MS.gene039673.t1 | MTR_3g101050 | 62.051 | 390 | 113 | 9 | 19 | 398 | 32 | 396 | 7.37e-148 | 425 |
| MS.gene039673.t1 | MTR_3g015760 | 76.449 | 276 | 63 | 2 | 125 | 400 | 8 | 281 | 1.54e-141 | 404 |
| MS.gene039673.t1 | MTR_3g102920 | 56.510 | 384 | 121 | 7 | 23 | 399 | 65 | 409 | 1.85e-134 | 391 |
| MS.gene039673.t1 | MTR_3g101190 | 55.858 | 367 | 89 | 6 | 38 | 399 | 13 | 311 | 2.77e-130 | 377 |
| MS.gene039673.t1 | MTR_3g101200 | 51.613 | 403 | 164 | 8 | 1 | 399 | 16 | 391 | 3.22e-121 | 357 |
| MS.gene039673.t1 | MTR_7g050830 | 54.545 | 330 | 116 | 4 | 1 | 308 | 1 | 318 | 7.07e-116 | 341 |
| MS.gene039673.t1 | MTR_3g100010 | 57.329 | 307 | 82 | 3 | 39 | 312 | 40 | 330 | 5.39e-111 | 329 |
| MS.gene039673.t1 | MTR_3g100995 | 62.451 | 253 | 90 | 3 | 147 | 398 | 14 | 262 | 2.58e-107 | 317 |
| MS.gene039673.t1 | MTR_3g018747 | 59.470 | 264 | 83 | 4 | 140 | 398 | 9 | 253 | 1.84e-99 | 296 |
| MS.gene039673.t1 | MTR_3g100520 | 58.482 | 224 | 72 | 5 | 181 | 399 | 1 | 208 | 4.99e-81 | 248 |
| MS.gene039673.t1 | MTR_3g114310 | 39.750 | 400 | 210 | 14 | 17 | 397 | 20 | 407 | 2.76e-77 | 245 |
| MS.gene039673.t1 | MTR_3g101110 | 56.017 | 241 | 72 | 5 | 140 | 374 | 68 | 280 | 1.07e-75 | 236 |
| MS.gene039673.t1 | MTR_3g111160 | 59.641 | 223 | 80 | 6 | 181 | 398 | 1 | 218 | 2.41e-75 | 233 |
| MS.gene039673.t1 | MTR_2g046410 | 57.416 | 209 | 77 | 5 | 197 | 398 | 144 | 347 | 1.10e-74 | 236 |
| MS.gene039673.t1 | MTR_3g099970 | 58.883 | 197 | 61 | 4 | 140 | 334 | 20 | 198 | 1.53e-68 | 215 |
| MS.gene039673.t1 | MTR_3g111150 | 59.887 | 177 | 47 | 2 | 18 | 194 | 1 | 153 | 5.08e-65 | 205 |
| MS.gene039673.t1 | MTR_3g101020 | 57.527 | 186 | 50 | 5 | 214 | 398 | 1 | 158 | 1.07e-60 | 194 |
| MS.gene039673.t1 | MTR_3g101150 | 64.151 | 159 | 50 | 4 | 248 | 400 | 2 | 159 | 6.42e-57 | 184 |
| MS.gene039673.t1 | MTR_3g102870 | 59.603 | 151 | 56 | 3 | 205 | 352 | 3 | 151 | 1.99e-53 | 176 |
| MS.gene039673.t1 | MTR_3g100990 | 72.000 | 125 | 35 | 0 | 16 | 140 | 5 | 129 | 3.27e-52 | 182 |
| MS.gene039673.t1 | MTR_4g093550 | 63.953 | 86 | 31 | 0 | 14 | 99 | 4 | 89 | 1.14e-27 | 105 |
| MS.gene039673.t1 | MTR_6g046890 | 58.904 | 73 | 30 | 0 | 24 | 96 | 7 | 79 | 2.64e-19 | 84.0 |
| MS.gene039673.t1 | MTR_3g101140 | 61.765 | 68 | 24 | 2 | 332 | 398 | 48 | 114 | 5.97e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039673.t1 | AT1G47710 | 50.750 | 400 | 190 | 4 | 4 | 398 | 20 | 417 | 8.37e-139 | 402 |
| MS.gene039673.t1 | AT1G47710 | 51.282 | 390 | 183 | 4 | 14 | 398 | 3 | 390 | 3.79e-138 | 400 |
| MS.gene039673.t1 | AT3G45220 | 45.823 | 395 | 192 | 7 | 16 | 397 | 5 | 390 | 7.46e-117 | 346 |
| MS.gene039673.t1 | AT2G26390 | 46.701 | 394 | 186 | 9 | 16 | 397 | 5 | 386 | 2.49e-116 | 344 |
| MS.gene039673.t1 | AT2G25240 | 47.436 | 390 | 185 | 8 | 16 | 397 | 5 | 382 | 1.90e-115 | 342 |
| MS.gene039673.t1 | AT1G62170 | 42.931 | 389 | 192 | 6 | 16 | 397 | 66 | 431 | 1.53e-102 | 311 |
| MS.gene039673.t1 | AT2G14540 | 44.500 | 400 | 193 | 6 | 4 | 397 | 21 | 397 | 5.24e-101 | 306 |
| MS.gene039673.t1 | AT1G64030 | 43.990 | 391 | 190 | 8 | 14 | 397 | 3 | 371 | 2.43e-98 | 298 |
| MS.gene039673.t1 | AT1G62170 | 39.573 | 422 | 192 | 7 | 16 | 397 | 66 | 464 | 1.48e-95 | 294 |
| MS.gene039673.t1 | AT2G35580 | 42.931 | 389 | 179 | 10 | 16 | 397 | 19 | 371 | 4.95e-93 | 284 |
| MS.gene039673.t1 | AT1G64010 | 45.413 | 218 | 95 | 4 | 181 | 397 | 1 | 195 | 1.07e-58 | 190 |
| MS.gene039673.t1 | AT1G64010 | 43.842 | 203 | 90 | 4 | 196 | 397 | 2 | 181 | 1.09e-50 | 169 |
| MS.gene039673.t1 | AT1G62160 | 42.211 | 199 | 89 | 4 | 203 | 397 | 42 | 218 | 5.53e-38 | 137 |
| MS.gene039673.t1 | AT1G63280 | 56.897 | 116 | 45 | 3 | 140 | 253 | 8 | 120 | 2.38e-35 | 126 |
| MS.gene039673.t1 | AT1G51330 | 54.054 | 111 | 47 | 3 | 139 | 246 | 30 | 139 | 6.76e-30 | 114 |
| MS.gene039673.t1 | AT1G64020 | 34.821 | 112 | 70 | 3 | 21 | 130 | 10 | 120 | 7.27e-14 | 68.2 |
Find 78 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGAAGAAGTGAATTTA+TGG | 0.232229 | 3.3:-10021881 | MS.gene039673:CDS |
| AATCGTATCTAATGATTATA+AGG | 0.286766 | 3.3:-10022440 | MS.gene039673:CDS |
| GTTGAGATGATCAGTTGATT+TGG | 0.296982 | 3.3:+10022588 | None:intergenic |
| CCTTGCCTCTCTTTCGTCAA+TGG | 0.302081 | 3.3:-10022508 | MS.gene039673:CDS |
| GCGAATGCACTGTACTTTAA+AGG | 0.316476 | 3.3:-10021780 | MS.gene039673:CDS |
| AAAAGACTTGTGAAATATCT+TGG | 0.368731 | 3.3:+10021323 | None:intergenic |
| TCGAAAGAAATATTGAATCT+TGG | 0.379974 | 3.3:+10021447 | None:intergenic |
| AAGTTCAAATTAGTGCCTTC+CGG | 0.380051 | 3.3:-10021473 | MS.gene039673:CDS |
| TTGTCTTCACCTTGCTCATA+AGG | 0.385648 | 3.3:+10021609 | None:intergenic |
| TTCTTTAGAGAAGAGATGTT+TGG | 0.388693 | 3.3:+10022720 | None:intergenic |
| AATCATTAGATACGATTTGT+TGG | 0.398638 | 3.3:+10022446 | None:intergenic |
| GCTTTCAAAGATGAGGAGTA+TGG | 0.400025 | 3.3:-10021258 | MS.gene039673:CDS |
| GCGCTCAGCATGATCGCTGC+TGG | 0.406741 | 3.3:-10022655 | MS.gene039673:CDS |
| TCTGGAACTGTACTCTTCAT+TGG | 0.410398 | 3.3:-10021159 | MS.gene039673:CDS |
| AAATTGCTTCTCATAATAAC+TGG | 0.413173 | 3.3:+10021668 | None:intergenic |
| TTTCTTCCTGATGCAAAAGA+TGG | 0.424204 | 3.3:-10021564 | MS.gene039673:CDS |
| CTCTTTCGTCAATGGAGTGT+GGG | 0.427737 | 3.3:-10022500 | MS.gene039673:CDS |
| CTCTCCAATGCTGCTCCCTC+CGG | 0.438523 | 3.3:-10022535 | MS.gene039673:CDS |
| ACCACCGGAGGGAGCAGCAT+TGG | 0.442798 | 3.3:+10022531 | None:intergenic |
| TCGAGAAGCTGTTCTCTTGT+GGG | 0.445430 | 3.3:+10022622 | None:intergenic |
| TTGATCAGAGACGATCTGTC+TGG | 0.453137 | 3.3:-10021177 | MS.gene039673:CDS |
| CGATCATGCTGAGCGCAACT+TGG | 0.453638 | 3.3:+10022662 | None:intergenic |
| CACTCCGAAGATAGAATTTG+TGG | 0.453884 | 3.3:-10021220 | MS.gene039673:CDS |
| CTCATAATAACTGGTCATGA+AGG | 0.454809 | 3.3:+10021677 | None:intergenic |
| GAAAGAGAGGCAAGGACCAC+CGG | 0.455855 | 3.3:+10022516 | None:intergenic |
| GTCGAGAAGCTGTTCTCTTG+TGG | 0.461285 | 3.3:+10022621 | None:intergenic |
| GATACGATTTGTTGGAAGGA+AGG | 0.462624 | 3.3:+10022454 | None:intergenic |
| TTTATTGAAGTAAATGAAGC+AGG | 0.473462 | 3.3:-10021303 | MS.gene039673:CDS |
| AGCGCAACTTGGAGGGAAAG+TGG | 0.476968 | 3.3:+10022673 | None:intergenic |
| AAATATTGAATCTTGGAATC+CGG | 0.479824 | 3.3:+10021454 | None:intergenic |
| GGGAGCAGCATTGGAGAGGA+TGG | 0.479850 | 3.3:+10022540 | None:intergenic |
| GCTTGAAGAAGTGAATTTAT+GGG | 0.483467 | 3.3:-10021880 | MS.gene039673:CDS |
| ATGATCGCTGCTGGCTCTGA+CGG | 0.486610 | 3.3:-10022646 | MS.gene039673:CDS |
| TCAGCCACAAATTCTATCTT+CGG | 0.492664 | 3.3:+10021216 | None:intergenic |
| AACTAAGTCATCAACTGAGC+CGG | 0.497028 | 3.3:+10021815 | None:intergenic |
| CACTGTACTTTAAAGGAGCA+TGG | 0.504436 | 3.3:-10021773 | MS.gene039673:CDS |
| TCTCTTTCGTCAATGGAGTG+TGG | 0.505142 | 3.3:-10022501 | MS.gene039673:CDS |
| CTTTGATTCACTGTGAGCCA+TGG | 0.505783 | 3.3:+10022807 | None:intergenic |
| ATTAGATACGATTTGTTGGA+AGG | 0.508632 | 3.3:+10022450 | None:intergenic |
| GATCAGTTGATTTGGAGAGA+AGG | 0.523363 | 3.3:+10022596 | None:intergenic |
| TCATGCTGAGCGCAACTTGG+AGG | 0.523467 | 3.3:+10022665 | None:intergenic |
| AGAGATGTTTGGCGATTCTG+AGG | 0.536626 | 3.3:+10022731 | None:intergenic |
| GGAAGGAAGGTTGCAGAGAA+CGG | 0.538634 | 3.3:+10022467 | None:intergenic |
| CATGCTGAGCGCAACTTGGA+GGG | 0.539990 | 3.3:+10022666 | None:intergenic |
| TCTACTATGCTGATGGAGCT+AGG | 0.541284 | 3.3:-10021414 | MS.gene039673:CDS |
| TCCAATGCTGCTCCCTCCGG+TGG | 0.541746 | 3.3:-10022532 | MS.gene039673:CDS |
| ATTGTTAAGTTTGATTGAGA+AGG | 0.552198 | 3.3:-10021541 | MS.gene039673:CDS |
| TGAAACTTCTACTATGCTGA+TGG | 0.560759 | 3.3:-10021421 | MS.gene039673:CDS |
| CTTCGTCTTCCTTATGAGCA+AGG | 0.564269 | 3.3:-10021618 | MS.gene039673:CDS |
| GCGCAACTTGGAGGGAAAGT+GGG | 0.565456 | 3.3:+10022674 | None:intergenic |
| ACTAAGTCATCAACTGAGCC+GGG | 0.569577 | 3.3:+10021816 | None:intergenic |
| AGAAACGAGATGAGAAGCAA+AGG | 0.575505 | 3.3:+10022564 | None:intergenic |
| GTCTGTTGATTTCAAGAACA+AGG | 0.576796 | 3.3:-10022407 | MS.gene039673:intron |
| TCTGAATGGCAACTCTGTCA+AGG | 0.581715 | 3.3:-10021703 | MS.gene039673:CDS |
| CGCAACTTGGAGGGAAAGTG+GGG | 0.583444 | 3.3:+10022675 | None:intergenic |
| TCATAATAACTGGTCATGAA+GGG | 0.584803 | 3.3:+10021678 | None:intergenic |
| AGAGAGGCAAGGACCACCGG+AGG | 0.589977 | 3.3:+10022519 | None:intergenic |
| TATCTTCGGAGTGTCGTCAC+AGG | 0.592557 | 3.3:+10021230 | None:intergenic |
| GGCAACTGCTTTCAAAGATG+AGG | 0.600631 | 3.3:-10021265 | MS.gene039673:CDS |
| CTTGAAATCAACAGACGACA+AGG | 0.603597 | 3.3:+10022414 | None:intergenic |
| ACTGTACTTTAAAGGAGCAT+GGG | 0.607721 | 3.3:-10021772 | MS.gene039673:CDS |
| ATTCACTTCTTCAAGCACTT+CGG | 0.609522 | 3.3:+10021887 | None:intergenic |
| AGTTAAGATTACATGACAAG+AGG | 0.614011 | 3.3:+10021123 | None:intergenic |
| CGGAGGGAGCAGCATTGGAG+AGG | 0.619755 | 3.3:+10022536 | None:intergenic |
| GTACTTTAAAGGAGCATGGG+AGG | 0.625570 | 3.3:-10021769 | MS.gene039673:CDS |
| ATTGAATCTTGGAATCCGGA+AGG | 0.629746 | 3.3:+10021458 | None:intergenic |
| GAGATGTTTGGCGATTCTGA+GGG | 0.631667 | 3.3:+10022732 | None:intergenic |
| GTTCGATATTTCAGATACAG+AGG | 0.632034 | 3.3:-10021742 | MS.gene039673:CDS |
| AGCAGGTACTGAAGCTGCTG+CGG | 0.638818 | 3.3:-10021286 | MS.gene039673:CDS |
| TATGCTGATGGAGCTAGGAG+TGG | 0.644969 | 3.3:-10021409 | MS.gene039673:CDS |
| ACACTCCATTGACGAAAGAG+AGG | 0.648769 | 3.3:+10022503 | None:intergenic |
| GATGACTTAGTTGTGCTCAT+CGG | 0.655177 | 3.3:-10021804 | MS.gene039673:CDS |
| GAAATATCTTGGAAACGACA+AGG | 0.665998 | 3.3:+10021334 | None:intergenic |
| GAGAGGCAAGGACCACCGGA+GGG | 0.686020 | 3.3:+10022520 | None:intergenic |
| CTTGCTCATAAGGAAGACGA+AGG | 0.700277 | 3.3:+10021619 | None:intergenic |
| AAGTCATCAACTGAGCCGGG+TGG | 0.701911 | 3.3:+10021819 | None:intergenic |
| CCATTGACGAAAGAGAGGCA+AGG | 0.731733 | 3.3:+10022508 | None:intergenic |
| GAAATCAACAGACGACAAGG+TGG | 0.734878 | 3.3:+10022417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTATTTTATATGGTTTTAA+AGG | - | chr3.3:10022023-10022042 | MS.gene039673:intron | 15.0% |
| !! | AATCGTATCTAATGATTATA+AGG | - | chr3.3:10021496-10021515 | MS.gene039673:CDS | 20.0% |
| !! | AATTATGTTGCTAAATAAGT+TGG | + | chr3.3:10021989-10022008 | None:intergenic | 20.0% |
| !! | CAGTAATATAAAACTATAAG+AGG | + | chr3.3:10021836-10021855 | None:intergenic | 20.0% |
| !!! | ACTGGTTTTTGTATTTTATA+TGG | - | chr3.3:10022014-10022033 | MS.gene039673:intron | 20.0% |
| !!! | GTTTTACCTTTTTTAGATAT+TGG | - | chr3.3:10022549-10022568 | MS.gene039673:CDS | 20.0% |
| ! | AAAAGACTTGTGAAATATCT+TGG | + | chr3.3:10022616-10022635 | None:intergenic | 25.0% |
| ! | AAATATTGAATCTTGGAATC+CGG | + | chr3.3:10022485-10022504 | None:intergenic | 25.0% |
| ! | AAATTGCTTCTCATAATAAC+TGG | + | chr3.3:10022271-10022290 | None:intergenic | 25.0% |
| ! | AATCATTAGATACGATTTGT+TGG | + | chr3.3:10021493-10021512 | None:intergenic | 25.0% |
| ! | ATTAGCAAGAAATCAAAGTA+GGG | + | chr3.3:10021594-10021613 | None:intergenic | 25.0% |
| ! | ATTGTTAAGTTTGATTGAGA+AGG | - | chr3.3:10022395-10022414 | MS.gene039673:intron | 25.0% |
| ! | GTGTTGTAAAAACTCAAATT+CGG | + | chr3.3:10022427-10022446 | None:intergenic | 25.0% |
| ! | TCGAAAGAAATATTGAATCT+TGG | + | chr3.3:10022492-10022511 | None:intergenic | 25.0% |
| ! | TGTTTATTTCATCACAAAGT+AGG | - | chr3.3:10021724-10021743 | MS.gene039673:CDS | 25.0% |
| ! | TTTATTGAAGTAAATGAAGC+AGG | - | chr3.3:10022633-10022652 | MS.gene039673:CDS | 25.0% |
| !! | AAGTATCATTCTTTTCTCTT+TGG | + | chr3.3:10021156-10021175 | None:intergenic | 25.0% |
| !! | AGTAAAATTTGATGATCCTT+TGG | - | chr3.3:10021862-10021881 | MS.gene039673:CDS | 25.0% |
| !! | AGTATCATTCTTTTCTCTTT+GGG | + | chr3.3:10021155-10021174 | None:intergenic | 25.0% |
| !! | TATGATTTTCACATTCTGAA+TGG | - | chr3.3:10022219-10022238 | MS.gene039673:intron | 25.0% |
| !!! | AGTTTTATGAAAGCAATTGA+CGG | - | chr3.3:10021929-10021948 | MS.gene039673:intron | 25.0% |
| !!! | CAATTTATCAGTGTTTTTGA+TGG | - | chr3.3:10022285-10022304 | MS.gene039673:intron | 25.0% |
| !!! | TTACCTTTTTTAGATATTGG+AGG | - | chr3.3:10022552-10022571 | MS.gene039673:CDS | 25.0% |
| ACACCTCCAATATCTAAAAA+AGG | + | chr3.3:10022558-10022577 | None:intergenic | 30.0% | |
| ATAAAAAATCTACTTCCACC+CGG | - | chr3.3:10022102-10022121 | MS.gene039673:intron | 30.0% | |
| CTCTGATCAAAAACAAGAAA+GGG | + | chr3.3:10022749-10022768 | None:intergenic | 30.0% | |
| GATTAGCAAGAAATCAAAGT+AGG | + | chr3.3:10021595-10021614 | None:intergenic | 30.0% | |
| GCTTGAAGAAGTGAATTTAT+GGG | - | chr3.3:10022056-10022075 | MS.gene039673:intron | 30.0% | |
| TAGCAACATAATTGCATAAC+TGG | - | chr3.3:10021996-10022015 | MS.gene039673:intron | 30.0% | |
| TCATAATAACTGGTCATGAA+GGG | + | chr3.3:10022261-10022280 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | + | chr3.3:10022750-10022769 | None:intergenic | 30.0% | |
| TGCTTGAAGAAGTGAATTTA+TGG | - | chr3.3:10022055-10022074 | MS.gene039673:intron | 30.0% | |
| ! | CTAATTTGAACTTTTTGACG+AGG | + | chr3.3:10022456-10022475 | None:intergenic | 30.0% |
| ! | TTCTTTAGAGAAGAGATGTT+TGG | + | chr3.3:10021219-10021238 | None:intergenic | 30.0% |
| !! | AAGAGGCATTTGAATAACAA+AGG | + | chr3.3:10021819-10021838 | None:intergenic | 30.0% |
| !! | ATTAGATACGATTTGTTGGA+AGG | + | chr3.3:10021489-10021508 | None:intergenic | 30.0% |
| !!! | TTTTTTAGATATTGGAGGTG+TGG | - | chr3.3:10022557-10022576 | MS.gene039673:CDS | 30.0% |
| AAAGCAATTCCATGTATGTG+AGG | - | chr3.3:10021791-10021810 | MS.gene039673:CDS | 35.0% | |
| AAGTTCAAATTAGTGCCTTC+CGG | - | chr3.3:10022463-10022482 | MS.gene039673:CDS | 35.0% | |
| ATTCACTTCTTCAAGCACTT+CGG | + | chr3.3:10022052-10022071 | None:intergenic | 35.0% | |
| CTCATAATAACTGGTCATGA+AGG | + | chr3.3:10022262-10022281 | None:intergenic | 35.0% | |
| GAAATATCTTGGAAACGACA+AGG | + | chr3.3:10022605-10022624 | None:intergenic | 35.0% | |
| GTTCGATATTTCAGATACAG+AGG | - | chr3.3:10022194-10022213 | MS.gene039673:intron | 35.0% | |
| GTTGAATAGTTGTATGCCAA+AGG | + | chr3.3:10021881-10021900 | None:intergenic | 35.0% | |
| GTTGAGATGATCAGTTGATT+TGG | + | chr3.3:10021351-10021370 | None:intergenic | 35.0% | |
| TCAGCCACAAATTCTATCTT+CGG | + | chr3.3:10022723-10022742 | None:intergenic | 35.0% | |
| TCTTGCTAATCACAAACGAT+TGG | - | chr3.3:10021604-10021623 | MS.gene039673:CDS | 35.0% | |
| TGAAACTTCTACTATGCTGA+TGG | - | chr3.3:10022515-10022534 | MS.gene039673:CDS | 35.0% | |
| TTTCTTCCTGATGCAAAAGA+TGG | - | chr3.3:10022372-10022391 | MS.gene039673:intron | 35.0% | |
| ! | AACAATCCATCTTTTGCATC+AGG | + | chr3.3:10022381-10022400 | None:intergenic | 35.0% |
| ! | ACTGTACTTTAAAGGAGCAT+GGG | - | chr3.3:10022164-10022183 | MS.gene039673:intron | 35.0% |
| ! | CATGGATTGCAATGAAAAGA+GGG | + | chr3.3:10021571-10021590 | None:intergenic | 35.0% |
| !! | GTCTGTTGATTTCAAGAACA+AGG | - | chr3.3:10021529-10021548 | MS.gene039673:CDS | 35.0% |
| !! | TTCTGAGGGAAACTTTTGTT+TGG | + | chr3.3:10021193-10021212 | None:intergenic | 35.0% |
| AACTAAGTCATCAACTGAGC+CGG | + | chr3.3:10022124-10022143 | None:intergenic | 40.0% | |
| ACAAAGGTTCCTCACATACA+TGG | + | chr3.3:10021803-10021822 | None:intergenic | 40.0% | |
| AGAAACGAGATGAGAAGCAA+AGG | + | chr3.3:10021375-10021394 | None:intergenic | 40.0% | |
| ATTGAATCTTGGAATCCGGA+AGG | + | chr3.3:10022481-10022500 | None:intergenic | 40.0% | |
| CAAGAAATCAAAGTAGGGCA+TGG | + | chr3.3:10021589-10021608 | None:intergenic | 40.0% | |
| CACTCCGAAGATAGAATTTG+TGG | - | chr3.3:10022716-10022735 | MS.gene039673:CDS | 40.0% | |
| CTTGAAATCAACAGACGACA+AGG | + | chr3.3:10021525-10021544 | None:intergenic | 40.0% | |
| GATGACTTAGTTGTGCTCAT+CGG | - | chr3.3:10022132-10022151 | MS.gene039673:intron | 40.0% | |
| GCGAATGCACTGTACTTTAA+AGG | - | chr3.3:10022156-10022175 | MS.gene039673:intron | 40.0% | |
| GCTTTCAAAGATGAGGAGTA+TGG | - | chr3.3:10022678-10022697 | MS.gene039673:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr3.3:10022075-10022094 | MS.gene039673:intron | 40.0% | |
| TTGTCTTCACCTTGCTCATA+AGG | + | chr3.3:10022330-10022349 | None:intergenic | 40.0% | |
| ! | CACTGTACTTTAAAGGAGCA+TGG | - | chr3.3:10022163-10022182 | MS.gene039673:intron | 40.0% |
| ! | GCATGGATTGCAATGAAAAG+AGG | + | chr3.3:10021572-10021591 | None:intergenic | 40.0% |
| ! | TATTGGAGGTGTGGCAAAAA+CGG | - | chr3.3:10022566-10022585 | MS.gene039673:CDS | 40.0% |
| ! | TCTGGAACTGTACTCTTCAT+TGG | - | chr3.3:10022777-10022796 | MS.gene039673:CDS | 40.0% |
| !! | GATACGATTTGTTGGAAGGA+AGG | + | chr3.3:10021485-10021504 | None:intergenic | 40.0% |
| !! | GATCAGTTGATTTGGAGAGA+AGG | + | chr3.3:10021343-10021362 | None:intergenic | 40.0% |
| ACACTCCATTGACGAAAGAG+AGG | + | chr3.3:10021436-10021455 | None:intergenic | 45.0% | |
| ACTAAGTCATCAACTGAGCC+GGG | + | chr3.3:10022123-10022142 | None:intergenic | 45.0% | |
| AGAGATGTTTGGCGATTCTG+AGG | + | chr3.3:10021208-10021227 | None:intergenic | 45.0% | |
| CTCTTTCGTCAATGGAGTGT+GGG | - | chr3.3:10021436-10021455 | MS.gene039673:CDS | 45.0% | |
| CTTCGTCTTCCTTATGAGCA+AGG | - | chr3.3:10022318-10022337 | MS.gene039673:intron | 45.0% | |
| CTTGCTCATAAGGAAGACGA+AGG | + | chr3.3:10022320-10022339 | None:intergenic | 45.0% | |
| GAAATCAACAGACGACAAGG+TGG | + | chr3.3:10021522-10021541 | None:intergenic | 45.0% | |
| GAGATGTTTGGCGATTCTGA+GGG | + | chr3.3:10021207-10021226 | None:intergenic | 45.0% | |
| GGCAACTGCTTTCAAAGATG+AGG | - | chr3.3:10022671-10022690 | MS.gene039673:CDS | 45.0% | |
| TCGAGAAGCTGTTCTCTTGT+GGG | + | chr3.3:10021317-10021336 | None:intergenic | 45.0% | |
| TCTACTATGCTGATGGAGCT+AGG | - | chr3.3:10022522-10022541 | MS.gene039673:CDS | 45.0% | |
| TCTCTTTCGTCAATGGAGTG+TGG | - | chr3.3:10021435-10021454 | MS.gene039673:CDS | 45.0% | |
| TCTGAATGGCAACTCTGTCA+AGG | - | chr3.3:10022233-10022252 | MS.gene039673:intron | 45.0% | |
| TTGATCAGAGACGATCTGTC+TGG | - | chr3.3:10022759-10022778 | MS.gene039673:CDS | 45.0% | |
| ! | GTACTTTAAAGGAGCATGGG+AGG | - | chr3.3:10022167-10022186 | MS.gene039673:intron | 45.0% |
| !!! | CTATTTTTTTTTTTATTAAA+AGG | + | chr3.3:10021700-10021719 | None:intergenic | 5.0% |
| CCATTGACGAAAGAGAGGCA+AGG | + | chr3.3:10021431-10021450 | None:intergenic | 50.0% | |
| CCTTGCCTCTCTTTCGTCAA+TGG | - | chr3.3:10021428-10021447 | MS.gene039673:CDS | 50.0% | |
| GGAAGGAAGGTTGCAGAGAA+CGG | + | chr3.3:10021472-10021491 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTCTCTTG+TGG | + | chr3.3:10021318-10021337 | None:intergenic | 50.0% | |
| TATGCTGATGGAGCTAGGAG+TGG | - | chr3.3:10022527-10022546 | MS.gene039673:CDS | 50.0% | |
| !! | TATCTTCGGAGTGTCGTCAC+AGG | + | chr3.3:10022709-10022728 | None:intergenic | 50.0% |
| AAGTCATCAACTGAGCCGGG+TGG | + | chr3.3:10022120-10022139 | None:intergenic | 55.0% | |
| AGCGCAACTTGGAGGGAAAG+TGG | + | chr3.3:10021266-10021285 | None:intergenic | 55.0% | |
| CATGCTGAGCGCAACTTGGA+GGG | + | chr3.3:10021273-10021292 | None:intergenic | 55.0% | |
| CGATCATGCTGAGCGCAACT+TGG | + | chr3.3:10021277-10021296 | None:intergenic | 55.0% | |
| CGCAACTTGGAGGGAAAGTG+GGG | + | chr3.3:10021264-10021283 | None:intergenic | 55.0% | |
| GAAAGAGAGGCAAGGACCAC+CGG | + | chr3.3:10021423-10021442 | None:intergenic | 55.0% | |
| GCGCAACTTGGAGGGAAAGT+GGG | + | chr3.3:10021265-10021284 | None:intergenic | 55.0% | |
| TCATGCTGAGCGCAACTTGG+AGG | + | chr3.3:10021274-10021293 | None:intergenic | 55.0% | |
| ! | TGGAGGTGTGGCAAAAACGG+TGG | - | chr3.3:10022569-10022588 | MS.gene039673:CDS | 55.0% |
| !! | AGCAGGTACTGAAGCTGCTG+CGG | - | chr3.3:10022650-10022669 | MS.gene039673:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+CGG | - | chr3.3:10021290-10021309 | MS.gene039673:CDS | 55.0% |
| CTCTCCAATGCTGCTCCCTC+CGG | - | chr3.3:10021401-10021420 | MS.gene039673:CDS | 60.0% | |
| GGTGTGGCAAAAACGGTGGC+TGG | - | chr3.3:10022573-10022592 | MS.gene039673:CDS | 60.0% | |
| ! | GGGAGCAGCATTGGAGAGGA+TGG | + | chr3.3:10021399-10021418 | None:intergenic | 60.0% |
| ACCACCGGAGGGAGCAGCAT+TGG | + | chr3.3:10021408-10021427 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGACCACCGG+AGG | + | chr3.3:10021420-10021439 | None:intergenic | 65.0% | |
| GAGAGGCAAGGACCACCGGA+GGG | + | chr3.3:10021419-10021438 | None:intergenic | 65.0% | |
| GCGCTCAGCATGATCGCTGC+TGG | - | chr3.3:10021281-10021300 | MS.gene039673:CDS | 65.0% | |
| TCCAATGCTGCTCCCTCCGG+TGG | - | chr3.3:10021404-10021423 | MS.gene039673:CDS | 65.0% | |
| ! | CGGAGGGAGCAGCATTGGAG+AGG | + | chr3.3:10021403-10021422 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 10021131 | 10022827 | 10021131 | ID=MS.gene039673 |
| chr3.3 | mRNA | 10021131 | 10022827 | 10021131 | ID=MS.gene039673.t1;Parent=MS.gene039673 |
| chr3.3 | exon | 10022408 | 10022827 | 10022408 | ID=MS.gene039673.t1.exon1;Parent=MS.gene039673.t1 |
| chr3.3 | CDS | 10022408 | 10022827 | 10022408 | ID=cds.MS.gene039673.t1;Parent=MS.gene039673.t1 |
| chr3.3 | exon | 10021131 | 10021913 | 10021131 | ID=MS.gene039673.t1.exon2;Parent=MS.gene039673.t1 |
| chr3.3 | CDS | 10021131 | 10021913 | 10021131 | ID=cds.MS.gene039673.t1;Parent=MS.gene039673.t1 |
| Gene Sequence |
| Protein sequence |
