Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039743.t1 | RHN65795.1 | 85.6 | 389 | 53 | 2 | 1 | 387 | 54 | 441 | 6.90E-179 | 636.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039743.t1 | Q9S7T8 | 52.6 | 390 | 180 | 3 | 1 | 385 | 1 | 390 | 5.1e-114 | 412.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039743.t1 | G7IW05 | 85.6 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 5.0e-179 | 636.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039743 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene039743 | PPI |
| MS.gene039743 | MS.gene065944 | PPI |
| MS.gene039743 | MS.gene031697 | PPI |
| MS.gene006610 | MS.gene039743 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039743.t1 | MTR_3g018740 | 85.604 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 0.0 | 660 |
| MS.gene039743.t1 | MTR_3g101010 | 72.680 | 388 | 102 | 2 | 1 | 385 | 1 | 387 | 0.0 | 552 |
| MS.gene039743.t1 | MTR_4g045707 | 68.930 | 383 | 117 | 2 | 4 | 385 | 5 | 386 | 0.0 | 530 |
| MS.gene039743.t1 | MTR_2g045980 | 69.975 | 393 | 107 | 5 | 1 | 387 | 1 | 388 | 0.0 | 524 |
| MS.gene039743.t1 | MTR_8g027395 | 68.394 | 386 | 114 | 3 | 3 | 385 | 15 | 395 | 0.0 | 521 |
| MS.gene039743.t1 | MTR_2g046030 | 68.193 | 393 | 114 | 5 | 1 | 387 | 1 | 388 | 0.0 | 515 |
| MS.gene039743.t1 | MTR_3g048000 | 65.617 | 381 | 112 | 3 | 6 | 385 | 28 | 390 | 3.03e-180 | 506 |
| MS.gene039743.t1 | MTR_4g088525 | 68.508 | 362 | 112 | 2 | 24 | 385 | 8 | 367 | 6.98e-177 | 497 |
| MS.gene039743.t1 | MTR_3g101030 | 64.987 | 397 | 115 | 5 | 10 | 385 | 34 | 427 | 7.42e-177 | 499 |
| MS.gene039743.t1 | MTR_3g101180 | 65.316 | 395 | 121 | 7 | 5 | 385 | 6 | 398 | 1.93e-176 | 497 |
| MS.gene039743.t1 | MTR_8g027420 | 66.321 | 386 | 111 | 4 | 3 | 385 | 4 | 373 | 5.95e-176 | 494 |
| MS.gene039743.t1 | MTR_8g461160 | 66.154 | 390 | 124 | 4 | 5 | 387 | 6 | 394 | 1.05e-173 | 490 |
| MS.gene039743.t1 | MTR_4g088535 | 67.196 | 378 | 106 | 3 | 5 | 382 | 7 | 366 | 1.97e-173 | 489 |
| MS.gene039743.t1 | MTR_7g451890 | 62.211 | 389 | 139 | 3 | 5 | 386 | 14 | 401 | 3.41e-169 | 479 |
| MS.gene039743.t1 | MTR_7g047780 | 62.725 | 389 | 137 | 4 | 5 | 386 | 14 | 401 | 7.85e-168 | 475 |
| MS.gene039743.t1 | MTR_3g101130 | 62.629 | 388 | 134 | 4 | 4 | 385 | 5 | 387 | 1.25e-167 | 474 |
| MS.gene039743.t1 | MTR_7g050750 | 61.381 | 391 | 143 | 3 | 3 | 386 | 6 | 395 | 5.91e-167 | 473 |
| MS.gene039743.t1 | MTR_7g050810 | 61.183 | 389 | 143 | 3 | 5 | 386 | 16 | 403 | 1.67e-164 | 467 |
| MS.gene039743.t1 | MTR_3g101050 | 62.953 | 386 | 114 | 6 | 8 | 385 | 32 | 396 | 5.69e-158 | 450 |
| MS.gene039743.t1 | MTR_3g015620 | 61.697 | 389 | 117 | 4 | 5 | 386 | 16 | 379 | 2.62e-157 | 447 |
| MS.gene039743.t1 | MTR_3g018747 | 80.077 | 261 | 36 | 2 | 129 | 387 | 9 | 255 | 3.92e-145 | 412 |
| MS.gene039743.t1 | MTR_3g102920 | 56.091 | 394 | 124 | 7 | 5 | 385 | 51 | 408 | 6.19e-138 | 399 |
| MS.gene039743.t1 | MTR_3g101190 | 56.104 | 385 | 94 | 6 | 1 | 385 | 1 | 310 | 7.02e-134 | 385 |
| MS.gene039743.t1 | MTR_3g101200 | 53.351 | 388 | 150 | 6 | 3 | 385 | 29 | 390 | 2.26e-124 | 364 |
| MS.gene039743.t1 | MTR_3g100995 | 64.844 | 256 | 85 | 2 | 133 | 386 | 11 | 263 | 9.21e-118 | 343 |
| MS.gene039743.t1 | MTR_3g100010 | 57.372 | 312 | 85 | 2 | 28 | 306 | 40 | 336 | 6.53e-116 | 341 |
| MS.gene039743.t1 | MTR_7g050830 | 56.051 | 314 | 105 | 3 | 5 | 296 | 16 | 318 | 9.79e-113 | 332 |
| MS.gene039743.t1 | MTR_3g015760 | 59.574 | 282 | 104 | 4 | 110 | 386 | 4 | 280 | 1.84e-105 | 312 |
| MS.gene039743.t1 | MTR_3g111160 | 69.863 | 219 | 62 | 3 | 170 | 385 | 1 | 218 | 7.81e-102 | 301 |
| MS.gene039743.t1 | MTR_3g114310 | 41.985 | 393 | 209 | 10 | 6 | 384 | 20 | 407 | 4.20e-89 | 275 |
| MS.gene039743.t1 | MTR_3g100520 | 61.751 | 217 | 72 | 3 | 170 | 385 | 1 | 207 | 3.24e-86 | 260 |
| MS.gene039743.t1 | MTR_3g101110 | 54.054 | 259 | 85 | 4 | 109 | 361 | 50 | 280 | 4.83e-85 | 260 |
| MS.gene039743.t1 | MTR_2g046410 | 64.423 | 208 | 66 | 4 | 186 | 387 | 144 | 349 | 8.55e-83 | 256 |
| MS.gene039743.t1 | MTR_3g099970 | 62.562 | 203 | 58 | 3 | 123 | 325 | 14 | 198 | 1.70e-82 | 250 |
| MS.gene039743.t1 | MTR_3g111150 | 64.972 | 177 | 38 | 2 | 7 | 183 | 1 | 153 | 1.37e-69 | 216 |
| MS.gene039743.t1 | MTR_3g102870 | 60.000 | 160 | 60 | 2 | 194 | 350 | 3 | 161 | 4.84e-59 | 189 |
| MS.gene039743.t1 | MTR_3g101020 | 53.226 | 186 | 58 | 2 | 203 | 386 | 1 | 159 | 9.56e-58 | 186 |
| MS.gene039743.t1 | MTR_3g101150 | 58.861 | 158 | 57 | 3 | 235 | 385 | 1 | 157 | 5.00e-56 | 181 |
| MS.gene039743.t1 | MTR_3g100990 | 62.338 | 154 | 57 | 1 | 1 | 154 | 1 | 153 | 4.48e-54 | 186 |
| MS.gene039743.t1 | MTR_4g093550 | 67.816 | 87 | 28 | 0 | 2 | 88 | 3 | 89 | 5.74e-33 | 119 |
| MS.gene039743.t1 | MTR_6g046890 | 68.493 | 73 | 23 | 0 | 13 | 85 | 7 | 79 | 3.66e-25 | 99.8 |
| MS.gene039743.t1 | MTR_3g101140 | 58.209 | 67 | 24 | 1 | 323 | 385 | 48 | 114 | 1.45e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039743.t1 | AT1G47710 | 52.564 | 390 | 180 | 3 | 1 | 385 | 1 | 390 | 3.68e-147 | 422 |
| MS.gene039743.t1 | AT1G47710 | 52.564 | 390 | 180 | 3 | 1 | 385 | 28 | 417 | 2.39e-146 | 421 |
| MS.gene039743.t1 | AT3G45220 | 48.855 | 393 | 189 | 5 | 1 | 384 | 1 | 390 | 2.09e-127 | 372 |
| MS.gene039743.t1 | AT2G25240 | 48.711 | 388 | 189 | 5 | 1 | 384 | 1 | 382 | 1.14e-125 | 367 |
| MS.gene039743.t1 | AT2G26390 | 48.744 | 398 | 178 | 7 | 1 | 384 | 1 | 386 | 2.13e-123 | 362 |
| MS.gene039743.t1 | AT1G64030 | 43.003 | 393 | 193 | 6 | 1 | 384 | 1 | 371 | 5.84e-104 | 312 |
| MS.gene039743.t1 | AT2G14540 | 43.590 | 390 | 189 | 6 | 3 | 384 | 31 | 397 | 7.45e-103 | 310 |
| MS.gene039743.t1 | AT1G62170 | 44.022 | 368 | 171 | 5 | 27 | 384 | 89 | 431 | 2.09e-101 | 307 |
| MS.gene039743.t1 | AT2G35580 | 42.494 | 393 | 181 | 9 | 1 | 384 | 15 | 371 | 4.27e-98 | 297 |
| MS.gene039743.t1 | AT1G62170 | 40.399 | 401 | 171 | 6 | 27 | 384 | 89 | 464 | 3.13e-94 | 290 |
| MS.gene039743.t1 | AT1G64010 | 44.749 | 219 | 93 | 5 | 170 | 384 | 1 | 195 | 1.88e-58 | 189 |
| MS.gene039743.t1 | AT1G64010 | 43.137 | 204 | 88 | 5 | 185 | 384 | 2 | 181 | 2.22e-50 | 167 |
| MS.gene039743.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 126 | 241 | 5 | 120 | 1.00e-35 | 127 |
| MS.gene039743.t1 | AT1G62160 | 37.879 | 198 | 97 | 6 | 192 | 384 | 42 | 218 | 7.27e-33 | 123 |
| MS.gene039743.t1 | AT1G51330 | 58.065 | 93 | 39 | 0 | 130 | 222 | 32 | 124 | 1.13e-27 | 108 |
| MS.gene039743.t1 | AT1G64020 | 33.036 | 112 | 72 | 3 | 10 | 119 | 10 | 120 | 8.61e-14 | 68.2 |
Find 71 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCGCTCTACTTTAA+AGG | 0.156076 | 3.3:+11342721 | MS.gene039743:CDS |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 3.3:+11342620 | MS.gene039743:CDS |
| TTCATTGAAGTAAATGAAAA+AGG | 0.254090 | 3.3:+11343204 | MS.gene039743:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.3:-11342889 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.3:-11342663 | None:intergenic |
| TCTCCTTTGTCAATGGTGTA+TGG | 0.329536 | 3.3:+11341862 | MS.gene039743:CDS |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3.3:-11342940 | None:intergenic |
| TTCTAATTACAAGGCCACTA+TGG | 0.349818 | 3.3:+11341932 | MS.gene039743:CDS |
| ACTGGAGCCATTCTCTTTGT+TGG | 0.371218 | 3.3:+11343336 | MS.gene039743:CDS |
| GTTAAGATGATCGGTGGCTT+TGG | 0.387080 | 3.3:-11341775 | None:intergenic |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.3:-11341643 | None:intergenic |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.3:+11343084 | MS.gene039743:CDS |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3.3:+11342934 | MS.gene039743:CDS |
| ACTTGTTTCTGTCGTGCTCT+CGG | 0.406977 | 3.3:+11341812 | MS.gene039743:CDS |
| GAAGGAAGATTGAAGAGAAA+GGG | 0.410651 | 3.3:-11341895 | None:intergenic |
| TGAAGGAAGATTGAAGAGAA+AGG | 0.414037 | 3.3:-11341896 | None:intergenic |
| AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.3:-11341913 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.3:+11343077 | MS.gene039743:CDS |
| TGCATAGAGAAACGTTCGTT+TGG | 0.431307 | 3.3:-11341617 | None:intergenic |
| CTCCTTTGTCAATGGTGTAT+GGG | 0.438426 | 3.3:+11341863 | MS.gene039743:CDS |
| GTCAGCATTGGTTGATGAGT+TGG | 0.440539 | 3.3:+11342960 | MS.gene039743:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.3:-11342685 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 3.3:+11342621 | MS.gene039743:CDS |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.459047 | 3.3:+11343144 | MS.gene039743:CDS |
| CCTCGACTCTCCTTTGTCAA+TGG | 0.460604 | 3.3:+11341855 | MS.gene039743:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.3:+11342880 | MS.gene039743:CDS |
| AACAACTTCTCGACTTCCTC+CGG | 0.462876 | 3.3:+11341751 | MS.gene039743:CDS |
| CTCTCGGACGCTGCTCCCAC+AGG | 0.463738 | 3.3:+11341828 | MS.gene039743:CDS |
| CATCTCCTCGCTAGTCATGA+AGG | 0.477758 | 3.3:-11342824 | None:intergenic |
| CGCATTAGCAAAGATGAGTC+TGG | 0.481214 | 3.3:-11342707 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.3:-11343306 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.487146 | 3.3:-11341599 | None:intergenic |
| GAAATCAACAAAAGCCATAG+TGG | 0.490033 | 3.3:-11341946 | None:intergenic |
| AAGCTGAGTTTGAATACCCT+TGG | 0.490459 | 3.3:-11343265 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3.3:-11342991 | None:intergenic |
| CGCTCTACTTTAAAGGAGCA+TGG | 0.493111 | 3.3:+11342728 | MS.gene039743:CDS |
| CTGATTAGAGAAGATTCGAC+TGG | 0.494613 | 3.3:+11343318 | MS.gene039743:CDS |
| TAGAGAAACGTTCGTTTGGT+TGG | 0.495618 | 3.3:-11341613 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.3:+11341717 | MS.gene039743:CDS |
| GTACTAAGCATCATCGCTGC+TGG | 0.512015 | 3.3:+11341708 | MS.gene039743:CDS |
| GATGATCGGTGGCTTTGGAC+CGG | 0.513561 | 3.3:-11341770 | None:intergenic |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.3:-11342795 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.3:-11343305 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.3:+11341716 | MS.gene039743:CDS |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.3:-11343117 | None:intergenic |
| TGCTGCAATATGTTGTTCCA+AGG | 0.525097 | 3.3:+11343248 | MS.gene039743:CDS |
| TCGAGAAGTTGTTGTTGTGT+TGG | 0.526642 | 3.3:-11341741 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.527168 | 3.3:-11343343 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 3.3:-11343018 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.3:+11342798 | MS.gene039743:CDS |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 3.3:+11343015 | MS.gene039743:CDS |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.3:-11343372 | None:intergenic |
| AATCGTGTCTTCTAATTACA+AGG | 0.552219 | 3.3:+11341923 | MS.gene039743:CDS |
| GGCGAGACAGTTAAGATGAT+CGG | 0.559809 | 3.3:-11341784 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.3:-11342682 | None:intergenic |
| TCGGACGCTGCTCCCACAGG+TGG | 0.573945 | 3.3:+11341831 | MS.gene039743:CDS |
| GCTGCAATATGTTGTTCCAA+GGG | 0.578130 | 3.3:+11343249 | MS.gene039743:CDS |
| ACAACATATTGCAGCACTAA+CGG | 0.581830 | 3.3:-11343241 | None:intergenic |
| ATCTCCTCGCTAGTCATGAA+GGG | 0.612833 | 3.3:-11342823 | None:intergenic |
| GATCGGTGGCTTTGGACCGG+AGG | 0.613908 | 3.3:-11341767 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.3:+11343089 | MS.gene039743:CDS |
| CACGACAGAAACAAGTTGAG+AGG | 0.624906 | 3.3:-11341805 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.3:-11341843 | None:intergenic |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3.3:+11342948 | MS.gene039743:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.3:-11343302 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.3:-11341844 | None:intergenic |
| AACCCATACACCATTGACAA+AGG | 0.645992 | 3.3:-11341865 | None:intergenic |
| GAGACAGTTAAGATGATCGG+TGG | 0.683008 | 3.3:-11341781 | None:intergenic |
| GGTTCCCTTCATGACTAGCG+AGG | 0.683605 | 3.3:+11342819 | MS.gene039743:CDS |
| AGTACAACTTGAAGAGACAG+TGG | 0.690097 | 3.3:-11341690 | None:intergenic |
| CCATTGACAAAGGAGAGTCG+AGG | 0.747113 | 3.3:-11341855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTATATGGTTTTAA+AGG | + | chr3.3:11342588-11342607 | MS.gene039743:intron | 10.0% |
| !! | TATATTTCATCAACAATTAA+TGG | + | chr3.3:11342027-11342046 | MS.gene039743:intron | 15.0% |
| !! | TCATATAGTTATGATATATT+TGG | + | chr3.3:11342277-11342296 | MS.gene039743:intron | 15.0% |
| !!! | AATAACATTTGCTATAAATT+AGG | - | chr3.3:11342093-11342112 | None:intergenic | 15.0% |
| !!! | ATTTAAAAATCAATTAGCTT+TGG | - | chr3.3:11342573-11342592 | None:intergenic | 15.0% |
| !! | TAGTTATGATATATTTGGAT+TGG | + | chr3.3:11342282-11342301 | MS.gene039743:intron | 20.0% |
| !! | TATCATAACTATATGATTGA+AGG | - | chr3.3:11342273-11342292 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.3:11343204-11343223 | MS.gene039743:CDS | 20.0% |
| !!! | TATAATTTTCACCTTTTGAA+TGG | + | chr3.3:11342784-11342803 | MS.gene039743:CDS | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.3:11343054-11343073 | None:intergenic | 20.0% |
| ! | ACAAAATAAACTGTTTGTGA+AGG | - | chr3.3:11342058-11342077 | None:intergenic | 25.0% |
| ! | ACTTATAAGTATAATGCTCT+TGG | + | chr3.3:11342150-11342169 | MS.gene039743:intron | 25.0% |
| ! | CAATTAGTATTTAGAAGCTT+TGG | - | chr3.3:11342439-11342458 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.3:11343308-11343327 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.3:11342621-11342640 | MS.gene039743:CDS | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.3:11343309-11343328 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr3.3:11342620-11342639 | MS.gene039743:CDS | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.3:11342892-11342911 | None:intergenic | 25.0% |
| !! | AAAGTAGGTTCTTCTTTTAA+AGG | + | chr3.3:11342206-11342225 | MS.gene039743:intron | 25.0% |
| !! | ATTGGTGGTATATAGTATAA+TGG | + | chr3.3:11342300-11342319 | MS.gene039743:intron | 25.0% |
| !! | GTTGATGAAATATAAAAGCA+AGG | - | chr3.3:11342021-11342040 | None:intergenic | 25.0% |
| !! | TTATGATATATTTGGATTGG+TGG | + | chr3.3:11342285-11342304 | MS.gene039743:intron | 25.0% |
| !!! | TTTTGTTGATTTCAAAACCA+AGG | + | chr3.3:11341956-11341975 | MS.gene039743:CDS | 25.0% |
| AATCGTGTCTTCTAATTACA+AGG | + | chr3.3:11341923-11341942 | MS.gene039743:CDS | 30.0% | |
| ATACCTCCAAATATACAAGA+TGG | - | chr3.3:11342503-11342522 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.3:11342666-11342685 | None:intergenic | 30.0% | |
| GTATGTCCATCTTGTATATT+TGG | + | chr3.3:11342494-11342513 | MS.gene039743:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.3:11343305-11343324 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.3:11343077-11343096 | MS.gene039743:CDS | 30.0% | |
| TGAAATATAAAAGCAAGGCA+TGG | - | chr3.3:11342016-11342035 | None:intergenic | 30.0% | |
| TGCTCTTGGAATTTATTTGA+TGG | + | chr3.3:11342164-11342183 | MS.gene039743:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.3:11341646-11341665 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | + | chr3.3:11342934-11342953 | MS.gene039743:CDS | 30.0% | |
| ! | ATAAAAGGGTATACTTGGAT+TGG | - | chr3.3:11342391-11342410 | None:intergenic | 30.0% |
| ! | ATCCAAGTATACCCTTTTAT+TGG | + | chr3.3:11342391-11342410 | MS.gene039743:intron | 30.0% |
| ! | TGGTATATAGTATAATGGAG+TGG | + | chr3.3:11342305-11342324 | MS.gene039743:intron | 30.0% |
| !! | GATTGGTGTTATTGAGTAAA+AGG | - | chr3.3:11342374-11342393 | None:intergenic | 30.0% |
| ACAACATATTGCAGCACTAA+CGG | - | chr3.3:11343244-11343263 | None:intergenic | 35.0% | |
| ACATCCAACTAGCCAATAAA+AGG | - | chr3.3:11342406-11342425 | None:intergenic | 35.0% | |
| AGAAGACACGATTTCTTTGA+AGG | - | chr3.3:11341916-11341935 | None:intergenic | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | chr3.3:11342994-11343013 | None:intergenic | 35.0% | |
| CATCCAACTAGCCAATAAAA+GGG | - | chr3.3:11342405-11342424 | None:intergenic | 35.0% | |
| CTGATTCTAGTGTAGAAAGT+AGG | + | chr3.3:11342191-11342210 | MS.gene039743:intron | 35.0% | |
| GAAATCAACAAAAGCCATAG+TGG | - | chr3.3:11341949-11341968 | None:intergenic | 35.0% | |
| GAAGGAAGATTGAAGAGAAA+GGG | - | chr3.3:11341898-11341917 | None:intergenic | 35.0% | |
| GGAGTGGAATGAAATGATTT+GGG | + | chr3.3:11342321-11342340 | MS.gene039743:intron | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.3:11342688-11342707 | None:intergenic | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.3:11343084-11343103 | MS.gene039743:CDS | 35.0% | |
| TGAAGGAAGATTGAAGAGAA+AGG | - | chr3.3:11341899-11341918 | None:intergenic | 35.0% | |
| TGGAGTGGAATGAAATGATT+TGG | + | chr3.3:11342320-11342339 | MS.gene039743:intron | 35.0% | |
| TGTCCATCTTGTATATTTGG+AGG | + | chr3.3:11342497-11342516 | MS.gene039743:intron | 35.0% | |
| TTCTAATTACAAGGCCACTA+TGG | + | chr3.3:11341932-11341951 | MS.gene039743:CDS | 35.0% | |
| ! | AGCCAATAAAAGGGTATACT+TGG | - | chr3.3:11342396-11342415 | None:intergenic | 35.0% |
| !! | ATACCCTTTTATTGGCTAGT+TGG | + | chr3.3:11342399-11342418 | MS.gene039743:intron | 35.0% |
| !! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.3:11341602-11341621 | None:intergenic | 35.0% |
| AACCCATACACCATTGACAA+AGG | - | chr3.3:11341868-11341887 | None:intergenic | 40.0% | |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.3:11342685-11342704 | None:intergenic | 40.0% | |
| AAGCTGAGTTTGAATACCCT+TGG | - | chr3.3:11343268-11343287 | None:intergenic | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.3:11342226-11342245 | MS.gene039743:intron | 40.0% | |
| AGTACAACTTGAAGAGACAG+TGG | - | chr3.3:11341693-11341712 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.3:11343346-11343365 | None:intergenic | 40.0% | |
| CTCCTTTGTCAATGGTGTAT+GGG | + | chr3.3:11341863-11341882 | MS.gene039743:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.3:11343318-11343337 | MS.gene039743:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.3:11342880-11342899 | MS.gene039743:CDS | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | - | chr3.3:11342943-11342962 | None:intergenic | 40.0% | |
| GCTAATGCGCTCTACTTTAA+AGG | + | chr3.3:11342721-11342740 | MS.gene039743:CDS | 40.0% | |
| GCTGCAATATGTTGTTCCAA+GGG | + | chr3.3:11343249-11343268 | MS.gene039743:CDS | 40.0% | |
| GGGGATATACAAACATACCT+TGG | - | chr3.3:11341976-11341995 | None:intergenic | 40.0% | |
| TAGAGAAACGTTCGTTTGGT+TGG | - | chr3.3:11341616-11341635 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.3:11343089-11343108 | MS.gene039743:CDS | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.3:11343125-11343144 | MS.gene039743:CDS | 40.0% | |
| TCTCCTTTGTCAATGGTGTA+TGG | + | chr3.3:11341862-11341881 | MS.gene039743:CDS | 40.0% | |
| TGCATAGAGAAACGTTCGTT+TGG | - | chr3.3:11341620-11341639 | None:intergenic | 40.0% | |
| TGCTGCAATATGTTGTTCCA+AGG | + | chr3.3:11343248-11343267 | MS.gene039743:CDS | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.3:11343128-11343147 | MS.gene039743:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.3:11342640-11342659 | MS.gene039743:CDS | 40.0% | |
| ! | ATGGATTGCAGCAAAAAGTG+GGG | - | chr3.3:11341997-11342016 | None:intergenic | 40.0% |
| ! | CATGGATTGCAGCAAAAAGT+GGG | - | chr3.3:11341998-11342017 | None:intergenic | 40.0% |
| ! | TCGAGAAGTTGTTGTTGTGT+TGG | - | chr3.3:11341744-11341763 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.3:11343129-11343148 | None:intergenic | 40.0% |
| !! | TAAAGATGGACTGTCAGCAT+TGG | + | chr3.3:11342948-11342967 | MS.gene039743:CDS | 40.0% |
| AACAACTTCTCGACTTCCTC+CGG | + | chr3.3:11341751-11341770 | MS.gene039743:CDS | 45.0% | |
| ACTGGAGCCATTCTCTTTGT+TGG | + | chr3.3:11343336-11343355 | MS.gene039743:CDS | 45.0% | |
| ATCTCCTCGCTAGTCATGAA+GGG | - | chr3.3:11342826-11342845 | None:intergenic | 45.0% | |
| CGCATTAGCAAAGATGAGTC+TGG | - | chr3.3:11342710-11342729 | None:intergenic | 45.0% | |
| GAGACAGTTAAGATGATCGG+TGG | - | chr3.3:11341784-11341803 | None:intergenic | 45.0% | |
| GGCGAGACAGTTAAGATGAT+CGG | - | chr3.3:11341787-11341806 | None:intergenic | 45.0% | |
| GTTAAGATGATCGGTGGCTT+TGG | - | chr3.3:11341778-11341797 | None:intergenic | 45.0% | |
| TGGATTGCAGCAAAAAGTGG+GGG | - | chr3.3:11341996-11342015 | None:intergenic | 45.0% | |
| ! | CACGACAGAAACAAGTTGAG+AGG | - | chr3.3:11341808-11341827 | None:intergenic | 45.0% |
| ! | CGCTCTACTTTAAAGGAGCA+TGG | + | chr3.3:11342728-11342747 | MS.gene039743:CDS | 45.0% |
| ! | GCATGGATTGCAGCAAAAAG+TGG | - | chr3.3:11341999-11342018 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.3:11343111-11343130 | MS.gene039743:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.3:11342792-11342811 | MS.gene039743:CDS | 45.0% |
| !! | ACTTGTTTCTGTCGTGCTCT+CGG | + | chr3.3:11341812-11341831 | MS.gene039743:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | chr3.3:11343144-11343163 | MS.gene039743:CDS | 45.0% |
| !! | GTCAGCATTGGTTGATGAGT+TGG | + | chr3.3:11342960-11342979 | MS.gene039743:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.3:11343108-11343127 | MS.gene039743:CDS | 45.0% |
| !!! | ATTGATTTTTAAATTTTATA+TGG | + | chr3.3:11342579-11342598 | MS.gene039743:intron | 5.0% |
| CATCTCCTCGCTAGTCATGA+AGG | - | chr3.3:11342827-11342846 | None:intergenic | 50.0% | |
| CCATTGACAAAGGAGAGTCG+AGG | - | chr3.3:11341858-11341877 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTTGTCAA+TGG | + | chr3.3:11341855-11341874 | MS.gene039743:CDS | 50.0% | |
| GGATTGCAGCAAAAAGTGGG+GGG | - | chr3.3:11341995-11342014 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.3:11341708-11341727 | MS.gene039743:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.3:11343120-11343139 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | chr3.3:11343021-11343040 | None:intergenic | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.3:11342798-11342817 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.3:11342798-11342817 | MS.gene039743:CDS | 50.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | chr3.3:11343015-11343034 | MS.gene039743:CDS | 55.0% | |
| GGTTCCCTTCATGACTAGCG+AGG | + | chr3.3:11342819-11342838 | MS.gene039743:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.3:11341717-11341736 | MS.gene039743:CDS | 55.0% |
| !! | GATGATCGGTGGCTTTGGAC+CGG | - | chr3.3:11341773-11341792 | None:intergenic | 55.0% |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.3:11341846-11341865 | None:intergenic | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.3:11341716-11341735 | MS.gene039743:CDS | 60.0% |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.3:11341847-11341866 | None:intergenic | 65.0% | |
| !! | GATCGGTGGCTTTGGACCGG+AGG | - | chr3.3:11341770-11341789 | None:intergenic | 65.0% |
| CTCTCGGACGCTGCTCCCAC+AGG | + | chr3.3:11341828-11341847 | MS.gene039743:CDS | 70.0% | |
| TCGGACGCTGCTCCCACAGG+TGG | + | chr3.3:11341831-11341850 | MS.gene039743:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 11341591 | 11343386 | 11341591 | ID=MS.gene039743 |
| chr3.3 | mRNA | 11341591 | 11343386 | 11341591 | ID=MS.gene039743.t1;Parent=MS.gene039743 |
| chr3.3 | exon | 11341591 | 11341977 | 11341591 | ID=MS.gene039743.t1.exon1;Parent=MS.gene039743.t1 |
| chr3.3 | CDS | 11341591 | 11341977 | 11341591 | ID=cds.MS.gene039743.t1;Parent=MS.gene039743.t1 |
| chr3.3 | exon | 11342610 | 11343386 | 11342610 | ID=MS.gene039743.t1.exon2;Parent=MS.gene039743.t1 |
| chr3.3 | CDS | 11342610 | 11343386 | 11342610 | ID=cds.MS.gene039743.t1;Parent=MS.gene039743.t1 |
| Gene Sequence |
| Protein sequence |
