Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039744.t1 | RHN65795.1 | 79 | 381 | 71 | 2 | 1 | 381 | 70 | 441 | 4.70E-156 | 560.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039744.t1 | Q9S7T8 | 53.5 | 385 | 164 | 6 | 1 | 380 | 17 | 391 | 2.3e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039744.t1 | G7IW05 | 79.0 | 381 | 71 | 2 | 1 | 381 | 17 | 388 | 3.4e-156 | 560.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene039744 | PPI |
| MS.gene065945 | MS.gene039744 | PPI |
| MS.gene031697 | MS.gene039744 | PPI |
| MS.gene039744 | MS.gene045585 | PPI |
| MS.gene039744 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039744.t1 | MTR_3g018740 | 79.003 | 381 | 71 | 2 | 1 | 381 | 17 | 388 | 0.0 | 583 |
| MS.gene039744.t1 | MTR_3g101010 | 72.178 | 381 | 94 | 4 | 1 | 379 | 17 | 387 | 0.0 | 518 |
| MS.gene039744.t1 | MTR_8g027395 | 67.018 | 379 | 113 | 4 | 1 | 379 | 29 | 395 | 1.18e-175 | 494 |
| MS.gene039744.t1 | MTR_3g101030 | 64.706 | 391 | 122 | 5 | 1 | 379 | 41 | 427 | 1.27e-173 | 491 |
| MS.gene039744.t1 | MTR_4g045707 | 66.755 | 379 | 116 | 3 | 1 | 379 | 18 | 386 | 4.61e-173 | 488 |
| MS.gene039744.t1 | MTR_2g045980 | 66.234 | 385 | 113 | 5 | 1 | 381 | 17 | 388 | 1.75e-170 | 481 |
| MS.gene039744.t1 | MTR_2g046030 | 65.195 | 385 | 117 | 5 | 1 | 381 | 17 | 388 | 1.83e-169 | 478 |
| MS.gene039744.t1 | MTR_8g027420 | 65.963 | 379 | 106 | 6 | 1 | 379 | 18 | 373 | 3.56e-167 | 472 |
| MS.gene039744.t1 | MTR_4g088525 | 64.960 | 371 | 118 | 4 | 9 | 379 | 9 | 367 | 2.21e-164 | 465 |
| MS.gene039744.t1 | MTR_8g461160 | 64.858 | 387 | 116 | 7 | 1 | 379 | 18 | 392 | 1.65e-163 | 464 |
| MS.gene039744.t1 | MTR_3g048000 | 61.942 | 381 | 118 | 4 | 1 | 381 | 39 | 392 | 9.95e-163 | 461 |
| MS.gene039744.t1 | MTR_3g101180 | 63.171 | 391 | 122 | 6 | 1 | 379 | 18 | 398 | 5.50e-162 | 460 |
| MS.gene039744.t1 | MTR_7g451890 | 60.260 | 385 | 137 | 5 | 1 | 379 | 26 | 400 | 4.59e-157 | 447 |
| MS.gene039744.t1 | MTR_7g047780 | 60.779 | 385 | 135 | 5 | 1 | 379 | 26 | 400 | 2.47e-155 | 443 |
| MS.gene039744.t1 | MTR_7g050810 | 60.260 | 385 | 137 | 5 | 1 | 379 | 28 | 402 | 5.62e-155 | 442 |
| MS.gene039744.t1 | MTR_4g088535 | 62.766 | 376 | 112 | 6 | 1 | 376 | 19 | 366 | 4.64e-154 | 439 |
| MS.gene039744.t1 | MTR_3g101050 | 63.969 | 383 | 107 | 8 | 1 | 379 | 41 | 396 | 2.02e-151 | 433 |
| MS.gene039744.t1 | MTR_3g101130 | 59.896 | 384 | 135 | 6 | 1 | 379 | 18 | 387 | 5.96e-151 | 432 |
| MS.gene039744.t1 | MTR_7g050750 | 58.961 | 385 | 142 | 5 | 1 | 379 | 20 | 394 | 8.62e-150 | 429 |
| MS.gene039744.t1 | MTR_3g015620 | 59.481 | 385 | 116 | 6 | 1 | 379 | 28 | 378 | 1.83e-141 | 407 |
| MS.gene039744.t1 | MTR_3g018747 | 78.161 | 261 | 41 | 3 | 122 | 381 | 10 | 255 | 2.46e-136 | 389 |
| MS.gene039744.t1 | MTR_3g102920 | 58.594 | 384 | 109 | 8 | 1 | 379 | 70 | 408 | 1.35e-135 | 393 |
| MS.gene039744.t1 | MTR_3g101190 | 55.556 | 369 | 93 | 4 | 11 | 379 | 13 | 310 | 6.17e-129 | 373 |
| MS.gene039744.t1 | MTR_3g100995 | 66.406 | 256 | 81 | 3 | 125 | 379 | 11 | 262 | 3.46e-115 | 336 |
| MS.gene039744.t1 | MTR_3g100010 | 57.508 | 313 | 92 | 3 | 12 | 299 | 40 | 336 | 5.61e-115 | 338 |
| MS.gene039744.t1 | MTR_3g101200 | 52.139 | 374 | 138 | 7 | 11 | 379 | 53 | 390 | 6.92e-113 | 335 |
| MS.gene039744.t1 | MTR_7g050830 | 55.116 | 303 | 110 | 4 | 1 | 289 | 28 | 318 | 3.70e-106 | 315 |
| MS.gene039744.t1 | MTR_3g015760 | 64.615 | 260 | 84 | 5 | 123 | 379 | 25 | 279 | 1.01e-100 | 300 |
| MS.gene039744.t1 | MTR_3g111160 | 68.304 | 224 | 59 | 4 | 162 | 379 | 1 | 218 | 4.74e-95 | 283 |
| MS.gene039744.t1 | MTR_3g100520 | 63.927 | 219 | 66 | 4 | 162 | 379 | 1 | 207 | 1.24e-88 | 266 |
| MS.gene039744.t1 | MTR_3g114310 | 42.820 | 383 | 189 | 10 | 12 | 378 | 39 | 407 | 4.65e-86 | 267 |
| MS.gene039744.t1 | MTR_2g046410 | 66.827 | 208 | 63 | 3 | 178 | 381 | 144 | 349 | 8.13e-86 | 264 |
| MS.gene039744.t1 | MTR_3g101110 | 59.494 | 237 | 64 | 4 | 124 | 355 | 71 | 280 | 3.48e-82 | 253 |
| MS.gene039744.t1 | MTR_3g099970 | 61.929 | 197 | 56 | 3 | 122 | 318 | 21 | 198 | 6.44e-75 | 231 |
| MS.gene039744.t1 | MTR_3g101020 | 58.065 | 186 | 49 | 4 | 195 | 379 | 1 | 158 | 5.27e-59 | 189 |
| MS.gene039744.t1 | MTR_3g111150 | 57.143 | 175 | 43 | 3 | 1 | 175 | 11 | 153 | 2.98e-58 | 187 |
| MS.gene039744.t1 | MTR_3g101150 | 64.780 | 159 | 48 | 3 | 227 | 379 | 1 | 157 | 1.86e-57 | 185 |
| MS.gene039744.t1 | MTR_3g102870 | 59.146 | 164 | 60 | 3 | 186 | 344 | 3 | 164 | 1.22e-56 | 183 |
| MS.gene039744.t1 | MTR_3g100990 | 67.257 | 113 | 37 | 0 | 1 | 113 | 17 | 129 | 2.35e-44 | 160 |
| MS.gene039744.t1 | MTR_4g093550 | 66.667 | 72 | 24 | 0 | 1 | 72 | 18 | 89 | 7.58e-26 | 100 |
| MS.gene039744.t1 | MTR_6g046890 | 71.875 | 64 | 18 | 0 | 6 | 69 | 16 | 79 | 5.97e-24 | 96.7 |
| MS.gene039744.t1 | MTR_3g101140 | 56.757 | 74 | 28 | 2 | 309 | 379 | 42 | 114 | 6.56e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039744.t1 | AT1G47710 | 53.506 | 385 | 164 | 6 | 1 | 380 | 17 | 391 | 1.48e-138 | 400 |
| MS.gene039744.t1 | AT1G47710 | 53.506 | 385 | 164 | 6 | 1 | 380 | 44 | 418 | 7.68e-138 | 399 |
| MS.gene039744.t1 | AT2G25240 | 50.131 | 383 | 169 | 9 | 1 | 378 | 17 | 382 | 6.95e-120 | 352 |
| MS.gene039744.t1 | AT3G45220 | 47.436 | 390 | 177 | 8 | 1 | 378 | 17 | 390 | 2.33e-116 | 344 |
| MS.gene039744.t1 | AT2G26390 | 48.205 | 390 | 170 | 9 | 1 | 378 | 17 | 386 | 3.57e-115 | 341 |
| MS.gene039744.t1 | AT1G62170 | 41.689 | 379 | 182 | 6 | 7 | 378 | 85 | 431 | 5.92e-93 | 285 |
| MS.gene039744.t1 | AT2G14540 | 43.883 | 376 | 169 | 9 | 11 | 378 | 56 | 397 | 8.67e-91 | 279 |
| MS.gene039744.t1 | AT1G62170 | 39.109 | 404 | 190 | 7 | 7 | 378 | 85 | 464 | 4.52e-89 | 276 |
| MS.gene039744.t1 | AT2G35580 | 42.588 | 371 | 172 | 11 | 17 | 378 | 33 | 371 | 2.10e-87 | 269 |
| MS.gene039744.t1 | AT1G64030 | 40.731 | 383 | 185 | 7 | 5 | 378 | 22 | 371 | 1.43e-86 | 267 |
| MS.gene039744.t1 | AT1G64010 | 47.273 | 220 | 88 | 5 | 162 | 378 | 1 | 195 | 1.15e-58 | 189 |
| MS.gene039744.t1 | AT1G64010 | 45.854 | 205 | 83 | 5 | 177 | 378 | 2 | 181 | 2.77e-50 | 167 |
| MS.gene039744.t1 | AT1G62160 | 39.000 | 200 | 94 | 6 | 184 | 378 | 42 | 218 | 1.54e-34 | 127 |
| MS.gene039744.t1 | AT1G63280 | 51.754 | 114 | 51 | 2 | 122 | 233 | 9 | 120 | 1.18e-30 | 114 |
| MS.gene039744.t1 | AT1G51330 | 57.143 | 91 | 39 | 0 | 124 | 214 | 34 | 124 | 2.75e-26 | 104 |
| MS.gene039744.t1 | AT1G64020 | 34.286 | 105 | 66 | 3 | 1 | 103 | 17 | 120 | 3.74e-12 | 63.2 |
Find 67 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGCACTCTACTTTAA+AGG | 0.124495 | 3.3:+11347740 | MS.gene039744:CDS |
| CAATGATACTTAGCACAATT+TGG | 0.212116 | 3.3:-11346826 | None:intergenic |
| GGACAAACTAGATTTATAAT+TGG | 0.281808 | 3.3:-11347059 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.3:-11347682 | None:intergenic |
| TTATCTTTGCCTTTCTTATA+CGG | 0.304297 | 3.3:-11347908 | None:intergenic |
| TCTCCTTTGTCAATGGTGTA+TGG | 0.329536 | 3.3:+11346987 | MS.gene039744:CDS |
| TTATTAAAGAAGTGAACTTA+TGG | 0.334252 | 3.3:+11347639 | MS.gene039744:CDS |
| AATTCACCTACTTCTACTTT+AGG | 0.342079 | 3.3:-11348043 | None:intergenic |
| GTTGATTCATCTACTGATCT+TGG | 0.347636 | 3.3:-11347704 | None:intergenic |
| GTTGAGATGATCTGTGGATT+TGG | 0.358590 | 3.3:-11346900 | None:intergenic |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.3:+11347967 | MS.gene039744:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3.3:-11347021 | None:intergenic |
| ACTGAAATAATTCTCTTTGT+CGG | 0.397067 | 3.3:+11348361 | MS.gene039744:CDS |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.3:+11347953 | MS.gene039744:CDS |
| TATTAAAGAAGTGAACTTAT+GGG | 0.409139 | 3.3:+11347640 | MS.gene039744:CDS |
| ACTTTATTTCAGCACAAAGT+AGG | 0.419428 | 3.3:+11347287 | MS.gene039744:intron |
| TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3.3:-11346768 | None:intergenic |
| CTCCTTTGTCAATGGTGTAT+GGG | 0.438426 | 3.3:+11346988 | MS.gene039744:CDS |
| CTCTGTTGATTTCATGACCA+AGG | 0.442392 | 3.3:+11347081 | MS.gene039744:CDS |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.3:+11346953 | MS.gene039744:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.3:-11347020 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.3:+11348226 | MS.gene039744:CDS |
| CCTCGACTCTCCTTTGTCAA+TGG | 0.460604 | 3.3:+11346980 | MS.gene039744:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.3:+11347899 | MS.gene039744:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.3:+11348253 | MS.gene039744:CDS |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.3:-11346957 | None:intergenic |
| GTCAAACCTCCGGAAAAGAA+AGG | 0.482483 | 3.3:-11348139 | None:intergenic |
| CGTCTTCCTAAAGTAGAAGT+AGG | 0.495565 | 3.3:+11348037 | MS.gene039744:CDS |
| CATCTCATCGCTAGTCATGA+AGG | 0.497416 | 3.3:-11347843 | None:intergenic |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.3:+11347961 | MS.gene039744:CDS |
| CTTGTCGGCTTTGGTTAAGA+AGG | 0.503520 | 3.3:+11347976 | MS.gene039744:CDS |
| GTGCTAAGTATCATTGCTGC+TGG | 0.503595 | 3.3:+11346833 | MS.gene039744:CDS |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.3:+11348166 | MS.gene039744:CDS |
| CTTTATTTCAGCACAAAGTA+GGG | 0.508614 | 3.3:+11347288 | MS.gene039744:intron |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 3.3:-11348331 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.3:+11347747 | MS.gene039744:CDS |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.3:+11346956 | MS.gene039744:CDS |
| TCTGAATGGCAGCTCGGTCA+AGG | 0.529185 | 3.3:+11347817 | MS.gene039744:CDS |
| GAGATATGTACCACAAGCCT+TGG | 0.536161 | 3.3:-11347098 | None:intergenic |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 3.3:-11348330 | None:intergenic |
| TCTGATATGCTGAAAGAGCT+AGG | 0.538261 | 3.3:+11348106 | MS.gene039744:CDS |
| TATCATTGCTGCTGGTTGTG+AGG | 0.540874 | 3.3:+11346841 | MS.gene039744:CDS |
| ATCATTGCTGCTGGTTGTGA+GGG | 0.541244 | 3.3:+11346842 | MS.gene039744:CDS |
| AATGGTGGACTCTTCTCTTG+TGG | 0.543680 | 3.3:+11348165 | MS.gene039744:CDS |
| GATGATCTGTGGATTTGGAC+TGG | 0.552896 | 3.3:-11346895 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.559977 | 3.3:-11346867 | None:intergenic |
| TCACCTTCTGAATGGCAGCT+CGG | 0.561657 | 3.3:+11347811 | MS.gene039744:CDS |
| TGCTAAGATCACTCATGAAG+AGG | 0.566263 | 3.3:-11348397 | None:intergenic |
| GATTCATCTACTGATCTTGG+AGG | 0.568404 | 3.3:-11347701 | None:intergenic |
| TGGGCTGAAAATGAGACGAA+TGG | 0.586040 | 3.3:+11347659 | MS.gene039744:CDS |
| AGCACAATTTGGATTGACAA+TGG | 0.590144 | 3.3:-11346815 | None:intergenic |
| TGCATTAGTAAAGATGAGCC+TGG | 0.591361 | 3.3:-11347726 | None:intergenic |
| TGACCGAGCTGCCATTCAGA+AGG | 0.594617 | 3.3:-11347814 | None:intergenic |
| ATCTCATCGCTAGTCATGAA+GGG | 0.612833 | 3.3:-11347842 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.620063 | 3.3:-11346866 | None:intergenic |
| GATTTCATGACCAAGGCTTG+TGG | 0.625065 | 3.3:+11347088 | MS.gene039744:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.3:-11346968 | None:intergenic |
| AAAATGTACATAGAGAATTG+AGG | 0.639607 | 3.3:-11347932 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.3:-11346969 | None:intergenic |
| AACCCATACACCATTGACAA+AGG | 0.645992 | 3.3:-11346990 | None:intergenic |
| GAGATAGTTGAGATGATCTG+TGG | 0.676063 | 3.3:-11346906 | None:intergenic |
| CACGACAGAAACAAGCTGAG+AGG | 0.687540 | 3.3:-11346930 | None:intergenic |
| GATCAGTAGATGAATCAACC+AGG | 0.703083 | 3.3:+11347708 | MS.gene039744:CDS |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.709518 | 3.3:+11348111 | MS.gene039744:CDS |
| CTTGGTCATGAAATCAACAG+AGG | 0.721147 | 3.3:-11347080 | None:intergenic |
| GATCTGTGGATTTGGACTGG+AGG | 0.737678 | 3.3:-11346892 | None:intergenic |
| CCATTGACAAAGGAGAGTCG+AGG | 0.747113 | 3.3:-11346980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTTAATTAATTAA+AGG | + | chr3.3:11347187-11347206 | MS.gene039744:intron | 10.0% |
| !! | TTTCATGTTAATTAATTAAA+GGG | + | chr3.3:11347188-11347207 | MS.gene039744:intron | 10.0% |
| !!! | ATTTGTTTTTATTTTATTTG+AGG | - | chr3.3:11347157-11347176 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTATTTTATTTGA+GGG | - | chr3.3:11347156-11347175 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTTTTTGAAG+GGG | - | chr3.3:11347427-11347446 | None:intergenic | 10.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | + | chr3.3:11347598-11347617 | MS.gene039744:intron | 15.0% |
| !! | ATAGTAAAATTTCATGACTT+TGG | + | chr3.3:11347331-11347350 | MS.gene039744:intron | 20.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | - | chr3.3:11348333-11348352 | None:intergenic | 20.0% |
| !! | TATTAAAGAAGTGAACTTAT+GGG | + | chr3.3:11347640-11347659 | MS.gene039744:CDS | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | - | chr3.3:11348334-11348353 | None:intergenic | 20.0% |
| !! | TTATTAAAGAAGTGAACTTA+TGG | + | chr3.3:11347639-11347658 | MS.gene039744:CDS | 20.0% |
| !!! | GAAATATTTTAGAAACAGAA+AGG | - | chr3.3:11348198-11348217 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.3:11348076-11348095 | None:intergenic | 20.0% |
| ! | AAAATGTACATAGAGAATTG+AGG | - | chr3.3:11347935-11347954 | None:intergenic | 25.0% |
| ! | ACTGAAATAATTCTCTTTGT+CGG | + | chr3.3:11348361-11348380 | MS.gene039744:CDS | 25.0% |
| ! | GGACAAACTAGATTTATAAT+TGG | - | chr3.3:11347062-11347081 | None:intergenic | 25.0% |
| ! | TATTACGTTGCTAAATTAGT+TGG | - | chr3.3:11347501-11347520 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.3:11347911-11347930 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.3:11348226-11348245 | MS.gene039744:CDS | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | - | chr3.3:11347363-11347382 | None:intergenic | 25.0% |
| AATTCACCTACTTCTACTTT+AGG | - | chr3.3:11348046-11348065 | None:intergenic | 30.0% | |
| ACAGATTGCTGTGAAAAAAA+GGG | - | chr3.3:11347123-11347142 | None:intergenic | 30.0% | |
| ACTAATGCACTCTACTTTAA+AGG | + | chr3.3:11347740-11347759 | MS.gene039744:CDS | 30.0% | |
| CAATGATACTTAGCACAATT+TGG | - | chr3.3:11346829-11346848 | None:intergenic | 30.0% | |
| CCAACTAACCAGAAAATTTA+GGG | - | chr3.3:11347242-11347261 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.3:11347685-11347704 | None:intergenic | 30.0% | |
| GGATGCTAGAAAACAATAAA+GGG | - | chr3.3:11347480-11347499 | None:intergenic | 30.0% | |
| TCCAACTAACCAGAAAATTT+AGG | - | chr3.3:11347243-11347262 | None:intergenic | 30.0% | |
| TGGATGCTAGAAAACAATAA+AGG | - | chr3.3:11347481-11347500 | None:intergenic | 30.0% | |
| ! | ACTTTATTTCAGCACAAAGT+AGG | + | chr3.3:11347287-11347306 | MS.gene039744:intron | 30.0% |
| ! | CAGAAAATTTAGGGTATACT+AGG | - | chr3.3:11347233-11347252 | None:intergenic | 30.0% |
| ! | CTAGTATACCCTAAATTTTC+TGG | + | chr3.3:11347231-11347250 | MS.gene039744:intron | 30.0% |
| ! | CTGAAATAAAGTAGAAGCAT+TGG | - | chr3.3:11347279-11347298 | None:intergenic | 30.0% |
| ! | CTTTATTTCAGCACAAAGTA+GGG | + | chr3.3:11347288-11347307 | MS.gene039744:intron | 30.0% |
| ! | TAATAAAGTGTTTCGTCACA+TGG | - | chr3.3:11347400-11347419 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr3.3:11347803-11347822 | MS.gene039744:CDS | 30.0% |
| AGCACAATTTGGATTGACAA+TGG | - | chr3.3:11346818-11346837 | None:intergenic | 35.0% | |
| GACAGATTGCTGTGAAAAAA+AGG | - | chr3.3:11347124-11347143 | None:intergenic | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.3:11347477-11347496 | None:intergenic | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.3:11347953-11347972 | MS.gene039744:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.3:11347961-11347980 | MS.gene039744:CDS | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | chr3.3:11347041-11347060 | None:intergenic | 35.0% |
| ! | GTTGATTCATCTACTGATCT+TGG | - | chr3.3:11347707-11347726 | None:intergenic | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | chr3.3:11347037-11347056 | None:intergenic | 35.0% |
| !! | GTGGTTTTACCTTTCTTTTC+CGG | + | chr3.3:11348130-11348149 | MS.gene039744:CDS | 35.0% |
| !!! | CCCTAAATTTTCTGGTTAGT+TGG | + | chr3.3:11347239-11347258 | MS.gene039744:intron | 35.0% |
| AACCCATACACCATTGACAA+AGG | - | chr3.3:11346993-11347012 | None:intergenic | 40.0% | |
| ATCTCATCGCTAGTCATGAA+GGG | - | chr3.3:11347845-11347864 | None:intergenic | 40.0% | |
| CGTCTTCCTAAAGTAGAAGT+AGG | + | chr3.3:11348037-11348056 | MS.gene039744:CDS | 40.0% | |
| CTCCTTTGTCAATGGTGTAT+GGG | + | chr3.3:11346988-11347007 | MS.gene039744:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.3:11347899-11347918 | MS.gene039744:CDS | 40.0% | |
| CTTGGTCATGAAATCAACAG+AGG | - | chr3.3:11347083-11347102 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.3:11347023-11347042 | None:intergenic | 40.0% | |
| GAGATAGTTGAGATGATCTG+TGG | - | chr3.3:11346909-11346928 | None:intergenic | 40.0% | |
| GATCAGTAGATGAATCAACC+AGG | + | chr3.3:11347708-11347727 | MS.gene039744:CDS | 40.0% | |
| GATTCATCTACTGATCTTGG+AGG | - | chr3.3:11347704-11347723 | None:intergenic | 40.0% | |
| GTTGAGATGATCTGTGGATT+TGG | - | chr3.3:11346903-11346922 | None:intergenic | 40.0% | |
| TCTCCTTTGTCAATGGTGTA+TGG | + | chr3.3:11346987-11347006 | MS.gene039744:CDS | 40.0% | |
| TCTGATATGCTGAAAGAGCT+AGG | + | chr3.3:11348106-11348125 | MS.gene039744:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.3:11347024-11347043 | None:intergenic | 40.0% | |
| TGCATTAGTAAAGATGAGCC+TGG | - | chr3.3:11347729-11347748 | None:intergenic | 40.0% | |
| TTCCGGAGGTTTGACAAAAA+TGG | + | chr3.3:11348147-11348166 | MS.gene039744:CDS | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | - | chr3.3:11346771-11346790 | None:intergenic | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.3:11347958-11347977 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.3:11347747-11347766 | MS.gene039744:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.3:11347962-11347981 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTTTTCCGG+AGG | + | chr3.3:11348133-11348152 | MS.gene039744:CDS | 40.0% |
| !! | CACCATTTTTGTCAAACCTC+CGG | - | chr3.3:11348152-11348171 | None:intergenic | 40.0% |
| !! | CTCTGTTGATTTCATGACCA+AGG | + | chr3.3:11347081-11347100 | MS.gene039744:CDS | 40.0% |
| CATCTCATCGCTAGTCATGA+AGG | - | chr3.3:11347846-11347865 | None:intergenic | 45.0% | |
| CGGAGGTTTGACAAAAATGG+TGG | + | chr3.3:11348150-11348169 | MS.gene039744:CDS | 45.0% | |
| GAGATATGTACCACAAGCCT+TGG | - | chr3.3:11347101-11347120 | None:intergenic | 45.0% | |
| GATGATCTGTGGATTTGGAC+TGG | - | chr3.3:11346898-11346917 | None:intergenic | 45.0% | |
| GATTTCATGACCAAGGCTTG+TGG | + | chr3.3:11347088-11347107 | MS.gene039744:CDS | 45.0% | |
| GTCAAACCTCCGGAAAAGAA+AGG | - | chr3.3:11348142-11348161 | None:intergenic | 45.0% | |
| GTGCTAAGTATCATTGCTGC+TGG | + | chr3.3:11346833-11346852 | MS.gene039744:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.3:11348111-11348130 | MS.gene039744:CDS | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.3:11346869-11346888 | None:intergenic | 45.0% | |
| TGGGCTGAAAATGAGACGAA+TGG | + | chr3.3:11347659-11347678 | MS.gene039744:CDS | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | - | chr3.3:11347389-11347408 | None:intergenic | 45.0% | |
| ! | ATCATTGCTGCTGGTTGTGA+GGG | + | chr3.3:11346842-11346861 | MS.gene039744:CDS | 45.0% |
| ! | TATCATTGCTGCTGGTTGTG+AGG | + | chr3.3:11346841-11346860 | MS.gene039744:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.3:11347967-11347986 | MS.gene039744:CDS | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.3:11348165-11348184 | MS.gene039744:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.3:11348166-11348185 | MS.gene039744:CDS | 45.0% |
| !! | CTTGTCGGCTTTGGTTAAGA+AGG | + | chr3.3:11347976-11347995 | MS.gene039744:CDS | 45.0% |
| !!! | AATTTTTATTTTTTTTTTGA+AGG | - | chr3.3:11347429-11347448 | None:intergenic | 5.0% |
| !!! | ATTTTTATTTTTTTTTTGAA+GGG | - | chr3.3:11347428-11347447 | None:intergenic | 5.0% |
| CACGACAGAAACAAGCTGAG+AGG | - | chr3.3:11346933-11346952 | None:intergenic | 50.0% | |
| CCATTGACAAAGGAGAGTCG+AGG | - | chr3.3:11346983-11347002 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTTGTCAA+TGG | + | chr3.3:11346980-11346999 | MS.gene039744:CDS | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.3:11346870-11346889 | None:intergenic | 50.0% | |
| TCACCTTCTGAATGGCAGCT+CGG | + | chr3.3:11347811-11347830 | MS.gene039744:CDS | 50.0% | |
| ! | GATCTGTGGATTTGGACTGG+AGG | - | chr3.3:11346895-11346914 | None:intergenic | 50.0% |
| TCTGAATGGCAGCTCGGTCA+AGG | + | chr3.3:11347817-11347836 | MS.gene039744:CDS | 55.0% | |
| TGACCGAGCTGCCATTCAGA+AGG | - | chr3.3:11347817-11347836 | None:intergenic | 55.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.3:11348253-11348272 | MS.gene039744:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.3:11346971-11346990 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.3:11346960-11346979 | None:intergenic | 60.0% | |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.3:11346953-11346972 | MS.gene039744:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.3:11346972-11346991 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.3:11346956-11346975 | MS.gene039744:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 11346764 | 11348411 | 11346764 | ID=MS.gene039744 |
| chr3.3 | mRNA | 11346764 | 11348411 | 11346764 | ID=MS.gene039744.t1;Parent=MS.gene039744 |
| chr3.3 | exon | 11346764 | 11347109 | 11346764 | ID=MS.gene039744.t1.exon1;Parent=MS.gene039744.t1 |
| chr3.3 | CDS | 11346764 | 11347109 | 11346764 | ID=cds.MS.gene039744.t1;Parent=MS.gene039744.t1 |
| chr3.3 | exon | 11347299 | 11347315 | 11347299 | ID=MS.gene039744.t1.exon2;Parent=MS.gene039744.t1 |
| chr3.3 | CDS | 11347299 | 11347315 | 11347299 | ID=cds.MS.gene039744.t1;Parent=MS.gene039744.t1 |
| chr3.3 | exon | 11347629 | 11348411 | 11347629 | ID=MS.gene039744.t1.exon3;Parent=MS.gene039744.t1 |
| chr3.3 | CDS | 11347629 | 11348411 | 11347629 | ID=cds.MS.gene039744.t1;Parent=MS.gene039744.t1 |
| Gene Sequence |
| Protein sequence |
