Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039745.t1 | RHN65795.1 | 82.3 | 389 | 65 | 2 | 1 | 386 | 54 | 441 | 9.90E-170 | 606.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039745.t1 | Q9S7T8 | 51.9 | 391 | 180 | 6 | 1 | 384 | 1 | 390 | 3.2e-108 | 393.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039745.t1 | G7IW05 | 82.3 | 389 | 65 | 2 | 1 | 386 | 1 | 388 | 7.2e-170 | 606.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039745 | MS.gene065944 | PPI |
| MS.gene039745 | MS.gene006610 | PPI |
| MS.gene039745 | MS.gene031697 | PPI |
| MS.gene039745 | MS.gene045585 | PPI |
| MS.gene039745 | MS.gene065945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039745.t1 | MTR_3g018740 | 82.262 | 389 | 65 | 2 | 1 | 386 | 1 | 388 | 0.0 | 622 |
| MS.gene039745.t1 | MTR_3g101010 | 73.454 | 388 | 98 | 3 | 1 | 384 | 1 | 387 | 0.0 | 551 |
| MS.gene039745.t1 | MTR_2g045980 | 71.173 | 392 | 103 | 4 | 1 | 386 | 1 | 388 | 0.0 | 527 |
| MS.gene039745.t1 | MTR_2g046030 | 69.898 | 392 | 108 | 4 | 1 | 386 | 1 | 388 | 0.0 | 523 |
| MS.gene039745.t1 | MTR_4g045707 | 69.191 | 383 | 115 | 2 | 4 | 384 | 5 | 386 | 0.0 | 516 |
| MS.gene039745.t1 | MTR_3g101030 | 67.342 | 395 | 108 | 5 | 10 | 384 | 34 | 427 | 0.0 | 514 |
| MS.gene039745.t1 | MTR_8g027395 | 67.700 | 387 | 114 | 4 | 3 | 384 | 15 | 395 | 0.0 | 512 |
| MS.gene039745.t1 | MTR_3g048000 | 65.714 | 385 | 104 | 7 | 6 | 384 | 28 | 390 | 1.12e-174 | 492 |
| MS.gene039745.t1 | MTR_8g461160 | 67.430 | 393 | 113 | 8 | 5 | 386 | 6 | 394 | 1.13e-174 | 492 |
| MS.gene039745.t1 | MTR_8g027420 | 65.885 | 384 | 115 | 4 | 3 | 384 | 4 | 373 | 4.47e-173 | 487 |
| MS.gene039745.t1 | MTR_3g101180 | 65.261 | 403 | 116 | 10 | 1 | 384 | 1 | 398 | 6.87e-172 | 485 |
| MS.gene039745.t1 | MTR_4g088525 | 67.218 | 363 | 114 | 3 | 24 | 384 | 8 | 367 | 3.26e-171 | 482 |
| MS.gene039745.t1 | MTR_7g451890 | 62.916 | 391 | 136 | 4 | 3 | 385 | 12 | 401 | 3.54e-169 | 478 |
| MS.gene039745.t1 | MTR_7g047780 | 63.427 | 391 | 134 | 5 | 3 | 385 | 12 | 401 | 8.81e-168 | 475 |
| MS.gene039745.t1 | MTR_7g050810 | 62.404 | 391 | 138 | 4 | 3 | 385 | 14 | 403 | 6.83e-167 | 473 |
| MS.gene039745.t1 | MTR_3g101130 | 64.249 | 386 | 130 | 4 | 4 | 384 | 5 | 387 | 6.85e-167 | 472 |
| MS.gene039745.t1 | MTR_7g050750 | 61.637 | 391 | 141 | 4 | 3 | 385 | 6 | 395 | 1.17e-165 | 469 |
| MS.gene039745.t1 | MTR_4g088535 | 65.435 | 379 | 110 | 4 | 5 | 381 | 7 | 366 | 1.85e-163 | 463 |
| MS.gene039745.t1 | MTR_3g101050 | 63.874 | 382 | 116 | 6 | 8 | 384 | 32 | 396 | 3.34e-160 | 456 |
| MS.gene039745.t1 | MTR_3g018747 | 85.115 | 262 | 20 | 3 | 129 | 386 | 9 | 255 | 7.29e-155 | 436 |
| MS.gene039745.t1 | MTR_3g015620 | 60.724 | 387 | 123 | 4 | 5 | 385 | 16 | 379 | 7.11e-151 | 431 |
| MS.gene039745.t1 | MTR_3g102920 | 56.423 | 397 | 117 | 9 | 5 | 384 | 51 | 408 | 1.51e-134 | 391 |
| MS.gene039745.t1 | MTR_3g101190 | 54.404 | 386 | 98 | 5 | 1 | 384 | 1 | 310 | 1.42e-128 | 372 |
| MS.gene039745.t1 | MTR_3g101200 | 55.181 | 386 | 145 | 5 | 3 | 384 | 29 | 390 | 1.50e-127 | 372 |
| MS.gene039745.t1 | MTR_3g100995 | 67.589 | 253 | 80 | 2 | 134 | 385 | 12 | 263 | 9.41e-121 | 350 |
| MS.gene039745.t1 | MTR_7g050830 | 58.095 | 315 | 98 | 4 | 5 | 297 | 16 | 318 | 1.94e-114 | 337 |
| MS.gene039745.t1 | MTR_3g100010 | 57.508 | 313 | 84 | 4 | 28 | 307 | 40 | 336 | 3.63e-113 | 334 |
| MS.gene039745.t1 | MTR_3g015760 | 63.602 | 261 | 90 | 4 | 128 | 385 | 22 | 280 | 6.37e-105 | 311 |
| MS.gene039745.t1 | MTR_3g111160 | 71.689 | 219 | 57 | 3 | 170 | 384 | 1 | 218 | 3.17e-103 | 304 |
| MS.gene039745.t1 | MTR_2g046410 | 68.116 | 207 | 59 | 3 | 186 | 386 | 144 | 349 | 4.43e-88 | 270 |
| MS.gene039745.t1 | MTR_3g100520 | 62.557 | 219 | 66 | 5 | 170 | 384 | 1 | 207 | 3.13e-83 | 253 |
| MS.gene039745.t1 | MTR_3g114310 | 42.025 | 395 | 205 | 12 | 6 | 383 | 20 | 407 | 3.82e-83 | 259 |
| MS.gene039745.t1 | MTR_3g099970 | 63.366 | 202 | 56 | 3 | 123 | 323 | 14 | 198 | 1.92e-81 | 248 |
| MS.gene039745.t1 | MTR_3g101110 | 56.846 | 241 | 67 | 5 | 129 | 360 | 68 | 280 | 7.12e-80 | 247 |
| MS.gene039745.t1 | MTR_3g111150 | 61.582 | 177 | 44 | 1 | 7 | 183 | 1 | 153 | 1.55e-66 | 208 |
| MS.gene039745.t1 | MTR_3g101020 | 56.044 | 182 | 55 | 2 | 205 | 385 | 2 | 159 | 1.62e-60 | 193 |
| MS.gene039745.t1 | MTR_3g101150 | 63.694 | 157 | 49 | 3 | 236 | 384 | 1 | 157 | 1.81e-58 | 187 |
| MS.gene039745.t1 | MTR_3g102870 | 60.256 | 156 | 59 | 2 | 192 | 345 | 1 | 155 | 2.47e-57 | 185 |
| MS.gene039745.t1 | MTR_3g100990 | 68.939 | 132 | 41 | 0 | 1 | 132 | 1 | 132 | 3.03e-53 | 184 |
| MS.gene039745.t1 | MTR_4g093550 | 67.442 | 86 | 28 | 0 | 3 | 88 | 4 | 89 | 6.68e-32 | 116 |
| MS.gene039745.t1 | MTR_6g046890 | 69.863 | 73 | 22 | 0 | 13 | 85 | 7 | 79 | 8.23e-27 | 104 |
| MS.gene039745.t1 | MTR_3g101140 | 59.701 | 67 | 24 | 1 | 321 | 384 | 48 | 114 | 1.61e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039745.t1 | AT1G47710 | 51.918 | 391 | 180 | 6 | 1 | 384 | 1 | 390 | 4.25e-139 | 402 |
| MS.gene039745.t1 | AT1G47710 | 51.918 | 391 | 180 | 6 | 1 | 384 | 28 | 417 | 2.81e-138 | 400 |
| MS.gene039745.t1 | AT3G45220 | 48.363 | 397 | 184 | 8 | 1 | 383 | 1 | 390 | 3.63e-123 | 361 |
| MS.gene039745.t1 | AT2G25240 | 48.974 | 390 | 184 | 8 | 1 | 383 | 1 | 382 | 2.13e-120 | 354 |
| MS.gene039745.t1 | AT2G26390 | 49.000 | 400 | 173 | 10 | 1 | 383 | 1 | 386 | 6.71e-119 | 350 |
| MS.gene039745.t1 | AT1G64030 | 43.223 | 391 | 194 | 8 | 1 | 383 | 1 | 371 | 6.87e-101 | 304 |
| MS.gene039745.t1 | AT1G62170 | 42.199 | 391 | 197 | 6 | 1 | 383 | 62 | 431 | 6.18e-98 | 298 |
| MS.gene039745.t1 | AT2G14540 | 44.615 | 390 | 188 | 7 | 1 | 383 | 29 | 397 | 1.97e-97 | 296 |
| MS.gene039745.t1 | AT2G35580 | 42.602 | 392 | 181 | 11 | 1 | 383 | 15 | 371 | 2.20e-93 | 285 |
| MS.gene039745.t1 | AT1G62170 | 38.915 | 424 | 197 | 7 | 1 | 383 | 62 | 464 | 1.01e-90 | 281 |
| MS.gene039745.t1 | AT1G64010 | 47.907 | 215 | 91 | 4 | 170 | 383 | 1 | 195 | 3.23e-62 | 199 |
| MS.gene039745.t1 | AT1G64010 | 46.500 | 200 | 86 | 4 | 185 | 383 | 2 | 181 | 2.14e-54 | 178 |
| MS.gene039745.t1 | AT1G62160 | 42.132 | 197 | 89 | 4 | 192 | 383 | 42 | 218 | 1.18e-34 | 127 |
| MS.gene039745.t1 | AT1G63280 | 55.462 | 119 | 48 | 3 | 126 | 242 | 5 | 120 | 7.90e-34 | 122 |
| MS.gene039745.t1 | AT1G51330 | 49.587 | 121 | 50 | 2 | 103 | 223 | 15 | 124 | 3.08e-26 | 104 |
| MS.gene039745.t1 | AT1G64020 | 30.579 | 121 | 81 | 3 | 1 | 119 | 1 | 120 | 9.17e-13 | 65.1 |
Find 75 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.3:+11353053 | MS.gene039745:CDS |
| CGACTAAAGAAGTGAATTTA+TGG | 0.178990 | 3.3:+11352952 | MS.gene039745:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.3:-11353224 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.3:-11352995 | None:intergenic |
| TCTCCTTCGTCAGTGGTGTA+TGG | 0.338625 | 3.3:+11352241 | MS.gene039745:CDS |
| AATAAACTGCATCTCCTTGC+TGG | 0.359084 | 3.3:-11353168 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.359618 | 3.3:+11353665 | MS.gene039745:CDS |
| TATTTCTGATTAGAGAAGAT+TGG | 0.360147 | 3.3:+11353642 | MS.gene039745:CDS |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.3:+11353283 | MS.gene039745:CDS |
| AATTCACCTACTTCTTCTTC+AGG | 0.377679 | 3.3:-11353356 | None:intergenic |
| CTTGTCGGCTTTGGTTAATA+AGG | 0.379850 | 3.3:+11353292 | MS.gene039745:CDS |
| ATCTAATTACGAGGCCACTA+TGG | 0.387391 | 3.3:+11352311 | MS.gene039745:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.3:-11352022 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.3:-11352275 | None:intergenic |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.3:+11353269 | MS.gene039745:CDS |
| TGCATAGGGAAACGTTTGTT+TGG | 0.411227 | 3.3:-11351996 | None:intergenic |
| AGATGACACGATTTCTTTGA+AGG | 0.432418 | 3.3:-11352292 | None:intergenic |
| CTCCTTGCTGGTCGTCATGA+AGG | 0.435175 | 3.3:-11353156 | None:intergenic |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.3:-11353017 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.3:-11352274 | None:intergenic |
| CTCCTTCGTCAGTGGTGTAT+GGG | 0.456822 | 3.3:+11352242 | MS.gene039745:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.3:+11353215 | MS.gene039745:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.462620 | 3.3:+11352953 | MS.gene039745:CDS |
| AGGAAAATGTACATAGAGAA+TGG | 0.462827 | 3.3:-11353251 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.3:+11353530 | MS.gene039745:CDS |
| AACAGCTTCTCGACTTCCTC+CGG | 0.467511 | 3.3:+11352130 | MS.gene039745:CDS |
| CTCTTCGACGCTGCTCCCAC+AGG | 0.473581 | 3.3:+11352207 | MS.gene039745:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.3:-11353039 | None:intergenic |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.3:+11353277 | MS.gene039745:CDS |
| CTGATTAGAGAAGATTGGAC+TGG | 0.501644 | 3.3:+11353647 | MS.gene039745:CDS |
| TAGGGAAACGTTTGTTTGGT+TGG | 0.507693 | 3.3:-11351992 | None:intergenic |
| GAAATATTTCAGAAACAGAA+AGG | 0.510094 | 3.3:-11353499 | None:intergenic |
| GTACTAAGCATCATCGCTGC+TGG | 0.510384 | 3.3:+11352087 | MS.gene039745:CDS |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.3:+11352096 | MS.gene039745:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.3:+11353060 | MS.gene039745:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.3:-11353127 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.3:+11352095 | MS.gene039745:CDS |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.3:-11352010 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.523677 | 3.3:-11352288 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.3:-11353452 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3.3:-11351978 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.3:-11353672 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.528708 | 3.3:-11353635 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.3:+11353130 | MS.gene039745:CDS |
| GTCGGCTTTGGTTAATAAGG+TGG | 0.531612 | 3.3:+11353295 | MS.gene039745:CDS |
| AGTCTTCCTGAAGAAGAAGT+AGG | 0.534032 | 3.3:+11353350 | MS.gene039745:CDS |
| TTCGACGCTGCTCCCACAGG+TGG | 0.536952 | 3.3:+11352210 | MS.gene039745:CDS |
| TCTCATATGCTGAAAGAGCT+AGG | 0.539995 | 3.3:+11353419 | MS.gene039745:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.3:-11352011 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.3:-11352325 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.3:-11353701 | None:intergenic |
| TCCTTGCTGGTCGTCATGAA+GGG | 0.547728 | 3.3:-11353155 | None:intergenic |
| GATGATCAGTGGATTTAGAC+CGG | 0.555777 | 3.3:-11352149 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.3:-11353014 | None:intergenic |
| CCTCGACTCTCCTTCGTCAG+TGG | 0.575802 | 3.3:+11352234 | MS.gene039745:CDS |
| TAATCAGAAATAAGAAAGGA+TGG | 0.579869 | 3.3:-11353631 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.3:+11352335 | MS.gene039745:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.3:-11352121 | None:intergenic |
| AATCTGAGTTACTACACCAC+AGG | 0.598662 | 3.3:+11353324 | MS.gene039745:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.3:-11352120 | None:intergenic |
| CACGACAGAAACAAGCTGAA+AGG | 0.609451 | 3.3:-11352184 | None:intergenic |
| TAGTGCTGCAATATGTTCCG+AGG | 0.625856 | 3.3:+11353571 | MS.gene039745:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.3:-11352222 | None:intergenic |
| AGTTTGAAATCGAATACCCT+CGG | 0.636520 | 3.3:-11353588 | None:intergenic |
| TCCCTTCATGACGACCAGCA+AGG | 0.643413 | 3.3:+11353154 | MS.gene039745:CDS |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.3:-11352223 | None:intergenic |
| AGTGCTGCAATATGTTCCGA+GGG | 0.658631 | 3.3:+11353572 | MS.gene039745:CDS |
| AACCCATACACCACTGACGA+AGG | 0.659348 | 3.3:-11352244 | None:intergenic |
| AAGATAGTTGAGATGATCAG+TGG | 0.660413 | 3.3:-11352160 | None:intergenic |
| AGTACAATTTGAAGAGACAG+TGG | 0.677153 | 3.3:-11352069 | None:intergenic |
| AATCGTGTCATCTAATTACG+AGG | 0.678044 | 3.3:+11352302 | MS.gene039745:CDS |
| CTTCAGGAAGACTAAACCTG+TGG | 0.690571 | 3.3:-11353340 | None:intergenic |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.693506 | 3.3:+11353424 | MS.gene039745:CDS |
| CCACTGACGAAGGAGAGTCG+AGG | 0.741972 | 3.3:-11352234 | None:intergenic |
| GATCAGTGGATTTAGACCGG+AGG | 0.742435 | 3.3:-11352146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCCATTTATAATTAA+TGG | + | chr3.3:11352376-11352395 | MS.gene039745:intron | 10.0% |
| !!! | TCAAATTTTAAAATCAATTA+TGG | - | chr3.3:11352909-11352928 | None:intergenic | 10.0% |
| !!! | AAAATTTGATATTGTTTTGA+AGG | + | chr3.3:11352920-11352939 | MS.gene039745:intron | 15.0% |
| !!! | AATAACATTTGCTATAAATT+AGG | - | chr3.3:11352441-11352460 | None:intergenic | 15.0% |
| !! | AATAGAAGAAATTATGCTAA+AGG | - | chr3.3:11352851-11352870 | None:intergenic | 20.0% |
| !! | ATAAATGGAAAATAAAAGCA+GGG | - | chr3.3:11352370-11352389 | None:intergenic | 20.0% |
| !! | ATACCTCAAAATATACAATA+TGG | - | chr3.3:11352676-11352695 | None:intergenic | 20.0% |
| !! | GTAGATCCATTAATTATAAA+TGG | - | chr3.3:11352385-11352404 | None:intergenic | 20.0% |
| !! | TATAAATGGAAAATAAAAGC+AGG | - | chr3.3:11352371-11352390 | None:intergenic | 20.0% |
| !!! | GTATATTTTAACACAAAGTA+GGG | + | chr3.3:11352631-11352650 | MS.gene039745:intron | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.3:11353389-11353408 | None:intergenic | 20.0% |
| !!! | TGTATATTTTAACACAAAGT+AGG | + | chr3.3:11352630-11352649 | MS.gene039745:intron | 20.0% |
| ! | ATAAAATAAACTGTTTGCGA+AGG | - | chr3.3:11352407-11352426 | None:intergenic | 25.0% |
| ! | GAAATATTTCAGAAACAGAA+AGG | - | chr3.3:11353502-11353521 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.3:11352953-11352972 | MS.gene039745:CDS | 25.0% |
| ! | TAATCAGAAATAAGAAAGGA+TGG | - | chr3.3:11353634-11353653 | None:intergenic | 25.0% |
| ! | TAGAACAAATAGATTCTTTC+TGG | - | chr3.3:11352883-11352902 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.3:11353638-11353657 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.3:11353227-11353246 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.3:11353530-11353549 | MS.gene039745:CDS | 25.0% |
| ! | TTCTTTGATCAATATAGCTT+TGG | - | chr3.3:11352746-11352765 | None:intergenic | 25.0% |
| !! | AAAGTAGGTTCTTCTTTTAA+AGG | + | chr3.3:11352554-11352573 | MS.gene039745:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.3:11353116-11353135 | MS.gene039745:CDS | 25.0% |
| !! | TATTTCTGATTAGAGAAGAT+TGG | + | chr3.3:11353642-11353661 | MS.gene039745:CDS | 25.0% |
| !! | TGTCCATATTGTATATTTTG+AGG | + | chr3.3:11352670-11352689 | MS.gene039745:intron | 25.0% |
| !!! | GTTATTTTACTTTTGAAGCA+TGG | + | chr3.3:11352455-11352474 | MS.gene039745:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.3:11352335-11352354 | MS.gene039745:CDS | 25.0% |
| AGGAAAATGTACATAGAGAA+TGG | - | chr3.3:11353254-11353273 | None:intergenic | 30.0% | |
| CAGTGCTATAAAATTTGAAG+AGG | - | chr3.3:11352806-11352825 | None:intergenic | 30.0% | |
| CGACTAAAGAAGTGAATTTA+TGG | + | chr3.3:11352952-11352971 | MS.gene039745:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.3:11352998-11353017 | None:intergenic | 30.0% | |
| TGCTCTTGGAATTTATTTGA+CGG | + | chr3.3:11352512-11352531 | MS.gene039745:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.3:11352025-11352044 | None:intergenic | 30.0% | |
| !! | CAAAAGTTTTGTCACATACA+CGG | - | chr3.3:11352772-11352791 | None:intergenic | 30.0% |
| AAGATAGTTGAGATGATCAG+TGG | - | chr3.3:11352163-11352182 | None:intergenic | 35.0% | |
| AATCGTGTCATCTAATTACG+AGG | + | chr3.3:11352302-11352321 | MS.gene039745:CDS | 35.0% | |
| AATTCACCTACTTCTTCTTC+AGG | - | chr3.3:11353359-11353378 | None:intergenic | 35.0% | |
| AGATGACACGATTTCTTTGA+AGG | - | chr3.3:11352295-11352314 | None:intergenic | 35.0% | |
| AGTACAATTTGAAGAGACAG+TGG | - | chr3.3:11352072-11352091 | None:intergenic | 35.0% | |
| CTGATTCTAGTGTAGAAAGT+AGG | + | chr3.3:11352539-11352558 | MS.gene039745:intron | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.3:11352328-11352347 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.3:11353053-11353072 | MS.gene039745:CDS | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.3:11353020-11353039 | None:intergenic | 35.0% | |
| TGGGCTGAAAAAAAGACAAA+TGG | + | chr3.3:11352972-11352991 | MS.gene039745:CDS | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.3:11353269-11353288 | MS.gene039745:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.3:11353277-11353296 | MS.gene039745:CDS | 35.0% |
| ! | ACTTATAAGCATTGTGCTCT+TGG | + | chr3.3:11352498-11352517 | MS.gene039745:intron | 35.0% |
| ! | AGTTTGAAATCGAATACCCT+CGG | - | chr3.3:11353591-11353610 | None:intergenic | 35.0% |
| !! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.3:11351981-11352000 | None:intergenic | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.3:11353017-11353036 | None:intergenic | 40.0% | |
| AATAAACTGCATCTCCTTGC+TGG | - | chr3.3:11353171-11353190 | None:intergenic | 40.0% | |
| AATCTGAGTTACTACACCAC+AGG | + | chr3.3:11353324-11353343 | MS.gene039745:CDS | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.3:11352014-11352033 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.3:11353665-11353684 | MS.gene039745:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.3:11352574-11352593 | MS.gene039745:intron | 40.0% | |
| AGTCTTCCTGAAGAAGAAGT+AGG | + | chr3.3:11353350-11353369 | MS.gene039745:CDS | 40.0% | |
| ATCTAATTACGAGGCCACTA+TGG | + | chr3.3:11352311-11352330 | MS.gene039745:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.3:11353675-11353694 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.3:11352013-11352032 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTGGAC+TGG | + | chr3.3:11353647-11353666 | MS.gene039745:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.3:11353215-11353234 | MS.gene039745:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.3:11352277-11352296 | None:intergenic | 40.0% | |
| TAGGGAAACGTTTGTTTGGT+TGG | - | chr3.3:11351995-11352014 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.3:11353460-11353479 | MS.gene039745:CDS | 40.0% | |
| TCTCATATGCTGAAAGAGCT+AGG | + | chr3.3:11353419-11353438 | MS.gene039745:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.3:11352278-11352297 | None:intergenic | 40.0% | |
| TGCATAGGGAAACGTTTGTT+TGG | - | chr3.3:11351999-11352018 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.3:11353042-11353061 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.3:11353463-11353482 | MS.gene039745:CDS | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.3:11353274-11353293 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.3:11353060-11353079 | MS.gene039745:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.3:11353278-11353297 | None:intergenic | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.3:11352291-11352310 | None:intergenic | 40.0% |
| ! | GATGATCAGTGGATTTAGAC+CGG | - | chr3.3:11352152-11352171 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.3:11353464-11353483 | None:intergenic | 40.0% |
| !! | CTTGTCGGCTTTGGTTAATA+AGG | + | chr3.3:11353292-11353311 | MS.gene039745:CDS | 40.0% |
| AGTGCTGCAATATGTTCCGA+GGG | + | chr3.3:11353572-11353591 | MS.gene039745:CDS | 45.0% | |
| CACGACAGAAACAAGCTGAA+AGG | - | chr3.3:11352187-11352206 | None:intergenic | 45.0% | |
| CTTCAGGAAGACTAAACCTG+TGG | - | chr3.3:11353343-11353362 | None:intergenic | 45.0% | |
| TAGTGCTGCAATATGTTCCG+AGG | + | chr3.3:11353571-11353590 | MS.gene039745:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.3:11353424-11353443 | MS.gene039745:CDS | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.3:11352123-11352142 | None:intergenic | 45.0% | |
| ! | GTCGGCTTTGGTTAATAAGG+TGG | + | chr3.3:11353295-11353314 | MS.gene039745:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.3:11353446-11353465 | MS.gene039745:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.3:11353124-11353143 | MS.gene039745:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.3:11353283-11353302 | MS.gene039745:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.3:11353443-11353462 | MS.gene039745:CDS | 45.0% |
| AACAGCTTCTCGACTTCCTC+CGG | + | chr3.3:11352130-11352149 | MS.gene039745:CDS | 50.0% | |
| AACCCATACACCACTGACGA+AGG | - | chr3.3:11352247-11352266 | None:intergenic | 50.0% | |
| AAGCAGGGCATGACATACCT+TGG | - | chr3.3:11352355-11352374 | None:intergenic | 50.0% | |
| CTCCTTCGTCAGTGGTGTAT+GGG | + | chr3.3:11352242-11352261 | MS.gene039745:CDS | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.3:11352087-11352106 | MS.gene039745:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.3:11353455-11353474 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.3:11352124-11352143 | None:intergenic | 50.0% | |
| TCCTTGCTGGTCGTCATGAA+GGG | - | chr3.3:11353158-11353177 | None:intergenic | 50.0% | |
| TCTCCTTCGTCAGTGGTGTA+TGG | + | chr3.3:11352241-11352260 | MS.gene039745:CDS | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.3:11353130-11353149 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.3:11353130-11353149 | MS.gene039745:CDS | 50.0% | |
| ! | GATCAGTGGATTTAGACCGG+AGG | - | chr3.3:11352149-11352168 | None:intergenic | 50.0% |
| CTCCTTGCTGGTCGTCATGA+AGG | - | chr3.3:11353159-11353178 | None:intergenic | 55.0% | |
| TCCCTTCATGACGACCAGCA+AGG | + | chr3.3:11353154-11353173 | MS.gene039745:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.3:11352096-11352115 | MS.gene039745:CDS | 55.0% |
| CCACTGACGAAGGAGAGTCG+AGG | - | chr3.3:11352237-11352256 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCAG+TGG | + | chr3.3:11352234-11352253 | MS.gene039745:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.3:11352225-11352244 | None:intergenic | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.3:11352095-11352114 | MS.gene039745:CDS | 60.0% |
| CTCTTCGACGCTGCTCCCAC+AGG | + | chr3.3:11352207-11352226 | MS.gene039745:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.3:11352226-11352245 | None:intergenic | 65.0% | |
| TTCGACGCTGCTCCCACAGG+TGG | + | chr3.3:11352210-11352229 | MS.gene039745:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 11351970 | 11353715 | 11351970 | ID=MS.gene039745 |
| chr3.3 | mRNA | 11351970 | 11353715 | 11351970 | ID=MS.gene039745.t1;Parent=MS.gene039745 |
| chr3.3 | exon | 11351970 | 11352356 | 11351970 | ID=MS.gene039745.t1.exon1;Parent=MS.gene039745.t1 |
| chr3.3 | CDS | 11351970 | 11352356 | 11351970 | ID=cds.MS.gene039745.t1;Parent=MS.gene039745.t1 |
| chr3.3 | exon | 11352942 | 11353715 | 11352942 | ID=MS.gene039745.t1.exon2;Parent=MS.gene039745.t1 |
| chr3.3 | CDS | 11352942 | 11353715 | 11352942 | ID=cds.MS.gene039745.t1;Parent=MS.gene039745.t1 |
| Gene Sequence |
| Protein sequence |
