AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03990.t1 MTR_3g463960 91.774 389 31 1 1 389 1 388 0.0 729
MS.gene03990.t1 MTR_3g463950 91.774 389 31 1 1 389 1 388 0.0 729
MS.gene03990.t1 MTR_3g463970 91.774 389 31 1 1 389 1 388 0.0 729
MS.gene03990.t1 MTR_3g463940 91.774 389 31 1 1 389 1 388 0.0 729
MS.gene03990.t1 MTR_3g463930 88.636 396 37 2 1 389 1 395 0.0 706
MS.gene03990.t1 MTR_3g448360 65.891 387 115 4 2 388 1 370 0.0 513
MS.gene03990.t1 MTR_3g438030 65.206 388 118 4 2 389 1 371 5.98e-177 497
MS.gene03990.t1 MTR_3g069780 65.206 388 118 4 2 389 1 371 1.22e-176 496
MS.gene03990.t1 MTR_3g069520 65.026 386 116 5 4 389 3 369 1.56e-176 496
MS.gene03990.t1 MTR_2g079090 64.249 386 109 6 4 389 3 359 4.71e-172 484
MS.gene03990.t1 MTR_0029s0050 64.752 383 106 6 7 389 6 359 2.18e-171 483
MS.gene03990.t1 MTR_2g079080 63.731 386 111 6 4 389 3 359 3.07e-170 479
MS.gene03990.t1 MTR_0029s0100 64.230 383 108 6 7 389 6 359 2.13e-169 478
MS.gene03990.t1 MTR_2g043980 57.069 389 128 10 4 389 9 361 3.23e-141 406
MS.gene03990.t1 MTR_2g015650 48.446 386 180 4 6 389 6 374 2.90e-120 353
MS.gene03990.t1 MTR_2g015670 47.175 354 161 6 41 389 28 360 6.69e-105 313
MS.gene03990.t1 MTR_2g015580 46.686 347 171 6 42 382 45 383 5.21e-99 300
MS.gene03990.t1 MTR_2g015630 45.640 344 175 5 49 386 36 373 1.63e-98 298
MS.gene03990.t1 MTR_2g015590 43.966 348 188 4 35 379 22 365 5.23e-98 296
MS.gene03990.t1 MTR_2g043990 51.456 309 105 9 4 309 71 337 9.96e-92 279
MS.gene03990.t1 MTR_2g015590 43.728 279 153 3 35 310 22 299 9.54e-72 228
MS.gene03990.t1 MTR_4g104240 36.888 347 200 10 39 379 34 367 2.63e-68 220
MS.gene03990.t1 MTR_3g466240 50.459 218 76 2 118 332 2 190 2.80e-66 209
MS.gene03990.t1 MTR_7g116870 35.311 354 196 11 42 379 31 367 9.72e-55 185
MS.gene03990.t1 MTR_7g087190 33.766 385 200 13 28 381 25 385 2.83e-54 184
MS.gene03990.t1 MTR_8g028160 35.311 354 200 12 42 379 34 374 4.15e-54 184
MS.gene03990.t1 MTR_1g030220 35.162 401 207 15 4 381 8 378 1.17e-53 182
MS.gene03990.t1 MTR_1g030268 35.180 361 191 13 42 381 38 376 2.24e-50 174
MS.gene03990.t1 MTR_3g466190 55.689 167 52 4 72 238 7 151 2.17e-49 166
MS.gene03990.t1 MTR_3g466190 64.557 79 27 1 311 389 152 229 6.13e-27 107
MS.gene03990.t1 MTR_1g030340 33.005 406 205 15 1 381 18 381 5.56e-49 170
MS.gene03990.t1 MTR_6g007090 34.957 349 201 10 42 379 37 370 2.54e-48 168
MS.gene03990.t1 MTR_1g030230 34.444 360 193 13 44 381 32 370 1.52e-47 166
MS.gene03990.t1 MTR_8g089805 33.422 374 195 12 37 381 33 381 1.51e-46 164
MS.gene03990.t1 MTR_7g111780 31.429 350 201 11 44 381 36 358 5.60e-46 162
MS.gene03990.t1 MTR_7g033165 32.361 377 211 13 31 386 22 375 7.87e-46 162
MS.gene03990.t1 MTR_1g030275 34.341 364 190 14 42 381 37 375 1.77e-45 161
MS.gene03990.t1 MTR_7g033150 33.871 372 198 15 37 381 28 378 5.70e-45 159
MS.gene03990.t1 MTR_6g007095 31.250 400 221 12 1 379 6 372 5.34e-43 159
MS.gene03990.t1 MTR_6g007095 29.070 344 203 8 59 381 367 690 2.43e-31 126
MS.gene03990.t1 MTR_1g082390 31.768 362 216 11 37 381 22 369 2.55e-42 152
MS.gene03990.t1 MTR_7g113860 31.856 361 206 12 40 379 25 366 4.93e-42 152
MS.gene03990.t1 MTR_7g033155 32.653 392 201 17 31 381 23 392 1.58e-41 150
MS.gene03990.t1 MTR_7g113860 30.933 375 215 14 29 379 18 372 2.24e-41 150
MS.gene03990.t1 MTR_8g038680 32.394 355 207 12 42 379 26 364 2.50e-38 141
MS.gene03990.t1 MTR_1g030268 34.589 292 162 9 42 320 38 313 8.54e-37 136
MS.gene03990.t1 MTR_1g030265 32.573 307 171 10 95 381 53 343 2.17e-35 133
MS.gene03990.t1 MTR_6g007100 28.721 383 234 12 1 379 6 353 3.31e-33 127
MS.gene03990.t1 MTR_4g056280 29.365 378 214 13 9 372 6 344 8.53e-33 126
MS.gene03990.t1 MTR_4g056160 29.080 337 212 9 44 372 27 344 2.65e-31 122
MS.gene03990.t1 MTR_7g033165 32.432 296 166 9 31 314 22 295 2.86e-31 121
MS.gene03990.t1 MTR_8g022810 28.933 356 212 13 29 368 22 352 6.86e-31 121
MS.gene03990.t1 MTR_2g033930 28.814 354 217 12 30 374 20 347 1.74e-30 120
MS.gene03990.t1 MTR_8g031420 30.919 359 208 16 40 388 29 357 3.00e-30 119
MS.gene03990.t1 MTR_5g022630 29.006 362 212 14 20 367 24 354 4.69e-30 119
MS.gene03990.t1 MTR_2g015080 29.683 347 207 15 33 364 29 353 5.67e-30 119
MS.gene03990.t1 MTR_8g031430 30.851 376 215 18 8 374 10 349 6.86e-30 118
MS.gene03990.t1 MTR_1g025780 28.529 340 207 12 44 373 41 354 7.55e-30 118
MS.gene03990.t1 MTR_3g052490 29.565 345 205 11 44 375 32 351 8.53e-30 118
MS.gene03990.t1 MTR_7g111780 29.091 275 159 9 119 381 9 259 1.67e-29 115
MS.gene03990.t1 MTR_3g052580 29.651 344 205 11 44 375 28 346 1.72e-29 118
MS.gene03990.t1 MTR_3g052580 29.360 344 206 11 44 375 27 345 2.19e-29 118
MS.gene03990.t1 MTR_8g031400 32.174 345 198 13 40 374 31 349 2.83e-29 117
MS.gene03990.t1 MTR_8g031390 30.337 356 206 15 40 384 31 355 7.82e-29 115
MS.gene03990.t1 MTR_8g014910 26.842 380 228 12 2 372 9 347 2.30e-28 114
MS.gene03990.t1 MTR_2g100620 28.280 343 205 14 44 372 31 346 3.97e-28 113
MS.gene03990.t1 MTR_8g012540 31.707 328 191 12 42 352 26 337 2.92e-27 110
MS.gene03990.t1 MTR_3g052480 29.480 346 205 12 44 375 33 353 9.01e-27 110
MS.gene03990.t1 MTR_5g022640 27.344 384 221 13 7 373 17 359 2.99e-26 108
MS.gene03990.t1 MTR_8g089805 29.677 310 169 10 100 381 25 313 4.14e-26 107
MS.gene03990.t1 MTR_2g033920 28.226 372 206 12 28 374 17 352 4.95e-26 108
MS.gene03990.t1 MTR_5g074270 29.558 362 212 16 20 369 16 346 5.47e-26 107
MS.gene03990.t1 MTR_3g005650 28.228 333 206 11 44 369 30 336 6.81e-26 107
MS.gene03990.t1 MTR_2g044100 26.891 357 217 15 37 377 36 364 7.95e-26 107
MS.gene03990.t1 MTR_4g087985 29.577 355 202 16 44 374 36 366 2.12e-25 106
MS.gene03990.t1 MTR_3g082830 27.954 347 210 12 44 377 38 357 2.16e-25 106
MS.gene03990.t1 MTR_7g113860 28.247 308 183 11 93 379 8 298 4.54e-25 104
MS.gene03990.t1 MTR_2g084585 28.406 345 201 14 44 372 30 344 6.34e-25 104
MS.gene03990.t1 MTR_5g084750 29.023 348 215 13 38 377 26 349 7.88e-25 104
MS.gene03990.t1 MTR_1g025680 28.902 346 200 14 44 373 34 349 2.04e-24 104
MS.gene03990.t1 MTR_1g025720 27.536 345 199 14 42 368 35 346 4.69e-24 102
MS.gene03990.t1 MTR_3g098270 26.823 384 233 13 20 385 8 361 4.95e-24 102
MS.gene03990.t1 MTR_5g093090 27.378 347 208 12 44 374 28 346 6.02e-24 102
MS.gene03990.t1 MTR_8g079050 26.786 392 226 15 1 374 12 360 6.89e-24 102
MS.gene03990.t1 MTR_5g084790 27.794 349 210 14 44 378 32 352 1.68e-23 100
MS.gene03990.t1 MTR_5g084770 27.941 340 210 12 44 372 28 343 2.78e-23 100
MS.gene03990.t1 MTR_4g035353 25.143 350 226 10 37 375 24 348 3.03e-23 100
MS.gene03990.t1 MTR_8g031390 30.872 298 173 12 40 330 31 302 3.49e-23 99.4
MS.gene03990.t1 MTR_1g025700 26.979 341 212 12 44 373 50 364 5.98e-23 99.4
MS.gene03990.t1 MTR_1g025760 27.566 341 211 11 44 373 80 395 8.99e-23 99.4
MS.gene03990.t1 MTR_3g114120 29.412 340 196 15 44 368 47 357 1.37e-22 98.2
MS.gene03990.t1 MTR_5g009100 25.959 339 223 9 46 377 48 365 2.16e-22 97.8
MS.gene03990.t1 MTR_8g087890 25.588 340 206 10 46 369 33 341 5.81e-22 96.7
MS.gene03990.t1 MTR_5g078210 25.513 341 214 12 48 376 29 341 5.85e-22 96.3
MS.gene03990.t1 MTR_7g116520 27.424 361 204 17 36 374 26 350 6.35e-22 96.7
MS.gene03990.t1 MTR_0565s0010 25.150 334 216 11 46 369 34 343 1.21e-21 95.5
MS.gene03990.t1 MTR_3g114090 27.457 346 215 12 39 373 31 351 2.14e-21 94.7
MS.gene03990.t1 MTR_1g025910 27.414 321 209 13 49 365 41 341 2.21e-21 95.1
MS.gene03990.t1 MTR_4g122200 26.361 349 220 11 37 374 30 352 2.28e-21 94.7
MS.gene03990.t1 MTR_3g464730 26.801 347 221 12 37 373 21 344 4.12e-21 94.0
MS.gene03990.t1 MTR_8g075220 27.697 343 217 12 42 373 38 360 1.16e-20 92.8
MS.gene03990.t1 MTR_1g069175 27.536 345 212 13 43 374 32 351 1.79e-20 92.4
MS.gene03990.t1 MTR_8g075200 26.571 350 225 12 33 373 30 356 2.13e-20 92.4
MS.gene03990.t1 MTR_3g435540 26.979 341 209 13 46 373 25 338 2.92e-20 91.7
MS.gene03990.t1 MTR_7g116570 25.915 355 215 13 43 379 33 357 3.95e-20 91.3
MS.gene03990.t1 MTR_0009s0250 26.087 345 215 14 44 380 33 345 5.80e-20 90.5
MS.gene03990.t1 MTR_7g116510 27.874 348 206 14 43 374 24 342 6.59e-20 90.5
MS.gene03990.t1 MTR_4g108690 25.220 341 215 13 46 373 29 342 2.68e-19 89.0
MS.gene03990.t1 MTR_5g083040 26.453 344 213 13 44 371 32 351 2.86e-19 88.6
MS.gene03990.t1 MTR_3g005660 26.409 337 211 14 46 369 38 350 9.27e-19 87.4
MS.gene03990.t1 MTR_1g092750 27.381 336 193 16 45 367 41 338 1.23e-18 86.7
MS.gene03990.t1 MTR_5g078210 27.076 277 173 8 48 313 29 287 5.57e-18 84.3
MS.gene03990.t1 MTR_1g060490 24.926 337 207 13 41 367 34 334 1.18e-17 84.0
MS.gene03990.t1 MTR_4g019880 25.698 358 230 13 29 374 17 350 1.69e-17 83.6
MS.gene03990.t1 MTR_2g033920 27.010 311 173 10 25 310 14 295 1.83e-17 82.8
MS.gene03990.t1 MTR_8g022810 29.339 242 141 9 29 256 22 247 1.90e-17 82.8
MS.gene03990.t1 MTR_1g079540 26.184 359 227 15 33 379 22 354 4.17e-17 82.4
MS.gene03990.t1 MTR_1g060500 25.507 345 211 13 41 371 37 349 6.08e-17 81.6
MS.gene03990.t1 MTR_7g104220 27.485 342 193 15 45 371 43 344 6.83e-17 81.6
MS.gene03990.t1 MTR_3g021460 24.090 357 224 11 28 374 16 335 9.52e-17 81.3
MS.gene03990.t1 MTR_3g024510 24.024 333 220 12 46 369 40 348 5.71e-16 79.0
MS.gene03990.t1 MTR_8g022790 25.000 344 214 12 42 374 35 345 1.03e-15 78.2
MS.gene03990.t1 MTR_2g017925 26.627 338 195 13 45 368 34 332 1.14e-15 78.2
MS.gene03990.t1 MTR_2g017955 24.370 357 216 13 45 385 34 352 2.42e-15 77.4
MS.gene03990.t1 MTR_1g092760 25.223 337 210 12 45 371 40 344 3.08e-15 76.6
MS.gene03990.t1 MTR_2g017875 25.000 372 225 16 30 385 20 353 1.23e-14 75.1
MS.gene03990.t1 MTR_2g461580 22.965 344 219 9 44 377 31 338 1.39e-14 74.7
MS.gene03990.t1 MTR_6g021530 26.087 345 218 13 48 379 33 353 1.47e-14 74.7
MS.gene03990.t1 MTR_2g017915 24.928 349 203 13 45 385 34 331 2.32e-14 73.9
MS.gene03990.t1 MTR_1108s0010 32.886 149 87 3 224 372 68 203 3.01e-14 71.6
MS.gene03990.t1 MTR_8g087870 27.148 291 177 12 45 326 30 294 3.39e-14 73.6
MS.gene03990.t1 MTR_1g079530 23.392 342 222 12 43 374 28 339 2.15e-13 71.2
MS.gene03990.t1 MTR_1g092740 25.074 339 217 11 35 369 32 337 3.81e-13 70.5
MS.gene03990.t1 MTR_7g008060 23.907 343 212 14 43 374 32 336 5.93e-13 69.7
MS.gene03990.t1 MTR_8g074560 25.556 360 213 18 44 379 31 359 4.34e-12 67.4
MS.gene03990.t1 MTR_4g056220 34.862 109 64 2 264 372 80 181 1.04e-11 63.9
MS.gene03990.t1 MTR_1g092690 24.085 328 206 12 45 364 52 344 1.25e-11 65.9
MS.gene03990.t1 MTR_1g082410 26.667 375 168 18 30 381 14 304 1.72e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03990.t1 AT5G45910 47.075 359 180 6 29 380 15 370 6.26e-106 317
MS.gene03990.t1 AT1G28610 44.789 355 184 6 31 381 20 366 7.55e-99 299
MS.gene03990.t1 AT1G28600 44.606 343 178 6 42 379 29 364 1.33e-96 294
MS.gene03990.t1 AT1G31550 44.315 343 179 6 42 379 34 369 5.45e-95 290
MS.gene03990.t1 AT1G28570 44.068 354 183 7 35 379 21 368 3.66e-93 285
MS.gene03990.t1 AT1G28590 43.931 346 183 6 42 382 34 373 5.91e-93 285
MS.gene03990.t1 AT1G28580 43.440 343 183 7 42 379 35 371 1.93e-91 280
MS.gene03990.t1 AT1G31550 43.732 343 178 7 42 379 34 366 4.07e-91 280
MS.gene03990.t1 AT2G27360 42.733 344 185 8 42 379 31 368 2.07e-90 278
MS.gene03990.t1 AT1G28640 41.739 345 190 7 42 381 33 371 1.05e-88 273
MS.gene03990.t1 AT1G28670 42.197 346 188 8 42 381 33 372 6.21e-88 271
MS.gene03990.t1 AT1G28660 42.319 345 188 7 42 381 33 371 7.89e-88 271
MS.gene03990.t1 AT1G28660 42.609 345 186 8 42 381 33 370 7.16e-87 268
MS.gene03990.t1 AT1G28650 41.159 345 192 6 42 381 35 373 8.24e-86 266
MS.gene03990.t1 AT1G28580 40.411 292 166 5 90 379 5 290 1.16e-69 222
MS.gene03990.t1 AT3G48460 37.500 352 189 11 41 379 35 368 4.31e-69 223
MS.gene03990.t1 AT5G03980 33.333 351 172 7 29 371 14 310 7.32e-55 184
MS.gene03990.t1 AT4G01130 34.637 358 197 11 42 379 32 372 2.02e-53 182
MS.gene03990.t1 AT1G28570 41.981 212 118 3 170 379 88 296 4.25e-52 176
MS.gene03990.t1 AT1G28570 55.224 67 23 2 35 94 21 87 1.20e-12 68.6
MS.gene03990.t1 AT1G28570 42.512 207 114 3 175 379 2 205 1.60e-51 172
MS.gene03990.t1 AT1G56670 32.316 393 222 14 1 379 1 363 1.70e-50 174
MS.gene03990.t1 AT1G54790 31.081 370 213 12 40 386 28 378 8.60e-48 167
MS.gene03990.t1 AT1G67830 32.133 361 207 11 35 374 21 364 1.86e-43 155
MS.gene03990.t1 AT3G26430 34.060 367 198 14 39 381 26 372 4.93e-43 154
MS.gene03990.t1 AT1G28600 44.693 179 91 4 42 216 29 203 1.28e-42 149
MS.gene03990.t1 AT1G09390 30.836 347 206 9 44 379 37 360 2.33e-42 152
MS.gene03990.t1 AT1G54790 29.058 382 227 13 30 386 15 377 2.95e-42 152
MS.gene03990.t1 AT5G14450 30.141 355 216 9 42 379 39 378 3.66e-41 149
MS.gene03990.t1 AT1G28610 42.246 187 100 4 31 214 20 201 1.28e-39 142
MS.gene03990.t1 AT3G05180 30.556 360 212 13 37 377 31 371 2.78e-39 144
MS.gene03990.t1 AT3G62280 29.360 344 211 10 45 379 37 357 6.80e-39 143
MS.gene03990.t1 AT1G54790 27.723 404 230 13 30 386 15 403 1.01e-37 140
MS.gene03990.t1 AT4G01130 34.643 280 159 8 42 310 32 298 1.89e-36 135
MS.gene03990.t1 AT3G27950 29.301 372 208 11 37 383 25 366 9.91e-34 129
MS.gene03990.t1 AT1G56670 30.960 323 184 12 1 310 1 297 1.39e-32 124
MS.gene03990.t1 AT4G01130 29.766 299 178 9 100 379 1 286 8.75e-31 119
MS.gene03990.t1 AT1G71120 28.986 345 198 11 44 374 31 342 1.38e-30 120
MS.gene03990.t1 AT1G20120 31.124 347 204 11 42 376 76 399 1.78e-30 120
MS.gene03990.t1 AT1G53920 29.330 358 213 14 44 388 48 378 4.11e-30 119
MS.gene03990.t1 AT1G23500 28.324 346 212 12 34 374 25 339 5.90e-30 118
MS.gene03990.t1 AT5G40990 32.471 348 193 16 44 375 37 358 9.95e-29 115
MS.gene03990.t1 AT5G45950 28.446 341 194 13 44 369 40 345 2.25e-28 114
MS.gene03990.t1 AT5G41890 29.444 360 214 14 46 388 33 369 4.34e-28 114
MS.gene03990.t1 AT1G73610 29.023 348 203 14 34 373 26 337 6.64e-28 112
MS.gene03990.t1 AT1G06990 27.461 386 240 13 1 376 1 356 2.35e-27 111
MS.gene03990.t1 AT1G20132 27.907 344 206 13 44 373 61 376 3.28e-27 111
MS.gene03990.t1 AT1G75890 27.596 337 217 10 44 373 47 363 1.51e-26 109
MS.gene03990.t1 AT2G40250 27.954 347 206 12 39 368 31 350 1.59e-26 109
MS.gene03990.t1 AT5G15720 26.269 335 217 11 44 369 30 343 2.05e-26 108
MS.gene03990.t1 AT1G75880 27.297 370 241 10 10 373 21 368 2.13e-26 109
MS.gene03990.t1 AT1G75890 27.596 337 217 10 44 373 76 392 2.58e-26 109
MS.gene03990.t1 AT1G75890 27.143 350 215 11 44 373 47 376 2.58e-26 108
MS.gene03990.t1 AT1G75880 27.297 370 240 10 10 373 21 367 2.76e-26 108
MS.gene03990.t1 AT1G53940 30.925 346 201 16 44 375 39 360 3.14e-26 108
MS.gene03990.t1 AT2G42990 28.144 334 208 12 44 368 28 338 1.09e-25 106
MS.gene03990.t1 AT1G75900 26.243 362 220 10 29 372 24 356 1.11e-25 107
MS.gene03990.t1 AT4G10950 27.401 354 216 12 35 374 61 387 1.24e-25 107
MS.gene03990.t1 AT2G04570 26.989 352 221 12 35 376 21 346 5.91e-25 104
MS.gene03990.t1 AT5G08460 28.070 342 206 12 42 368 47 363 8.84e-25 104
MS.gene03990.t1 AT5G63170 27.941 340 197 13 35 364 21 322 1.14e-24 103
MS.gene03990.t1 AT3G14225 28.451 355 217 15 44 384 37 368 1.65e-24 103
MS.gene03990.t1 AT1G71250 25.740 338 225 7 44 375 41 358 1.90e-24 103
MS.gene03990.t1 AT3G14225 28.329 353 216 15 44 384 37 364 2.07e-24 103
MS.gene03990.t1 AT5G45960 28.824 340 208 13 44 371 47 364 2.46e-24 103
MS.gene03990.t1 AT1G75920 28.809 361 193 14 31 373 22 336 3.19e-24 102
MS.gene03990.t1 AT3G16370 26.629 353 224 13 35 377 23 350 1.03e-23 101
MS.gene03990.t1 AT1G75910 27.401 354 214 14 30 373 16 336 1.08e-23 101
MS.gene03990.t1 AT1G20130 26.629 353 206 12 44 373 204 526 1.78e-23 102
MS.gene03990.t1 AT4G26790 26.316 342 218 13 42 373 27 344 2.09e-23 100
MS.gene03990.t1 AT4G26790 26.316 342 218 13 42 373 27 344 2.09e-23 100
MS.gene03990.t1 AT2G23540 30.252 357 190 18 44 374 48 371 3.04e-23 100
MS.gene03990.t1 AT1G20130 26.629 353 206 12 44 373 184 506 4.51e-23 101
MS.gene03990.t1 AT4G10950 27.119 354 213 13 35 374 61 383 5.38e-23 100
MS.gene03990.t1 AT3G62280 27.737 274 171 8 45 310 37 291 6.94e-23 97.8
MS.gene03990.t1 AT1G71691 27.035 344 207 10 44 374 55 367 8.46e-23 99.4
MS.gene03990.t1 AT1G74460 27.273 341 208 12 46 373 25 338 1.07e-22 98.6
MS.gene03990.t1 AT1G20135 25.816 337 212 9 37 367 22 326 1.76e-22 97.4
MS.gene03990.t1 AT3G04290 26.471 340 220 10 43 374 28 345 3.49e-22 97.1
MS.gene03990.t1 AT3G14820 27.139 339 209 12 44 372 32 342 3.68e-22 97.1
MS.gene03990.t1 AT1G29670 27.353 340 199 12 46 369 34 341 4.96e-22 96.7
MS.gene03990.t1 AT1G53990 27.068 399 228 19 1 384 5 355 6.62e-22 96.3
MS.gene03990.t1 AT1G29670 27.353 340 199 12 46 369 102 409 9.15e-22 96.7
MS.gene03990.t1 AT5G18430 26.239 343 219 12 43 374 27 346 2.05e-21 95.1
MS.gene03990.t1 AT5G22810 25.806 341 218 9 44 372 34 351 2.29e-21 94.7
MS.gene03990.t1 AT5G03810 26.901 342 211 14 44 372 30 345 4.09e-21 94.0
MS.gene03990.t1 AT1G75920 28.963 328 174 14 65 373 21 308 5.04e-21 93.2
MS.gene03990.t1 AT5G03820 26.023 342 215 13 44 372 33 349 5.09e-21 93.6
MS.gene03990.t1 AT1G75920 27.926 376 192 15 31 373 17 346 7.87e-21 93.2
MS.gene03990.t1 AT5G42170 26.506 332 221 10 44 372 50 361 8.04e-21 93.2
MS.gene03990.t1 AT1G59406 26.686 341 211 10 44 373 30 342 8.77e-21 92.8
MS.gene03990.t1 AT1G59030 26.686 341 211 10 44 373 30 342 8.77e-21 92.8
MS.gene03990.t1 AT1G58725 26.686 341 211 10 44 373 30 342 8.77e-21 92.8
MS.gene03990.t1 AT3G53100 26.822 343 209 13 44 372 29 343 1.15e-20 92.8
MS.gene03990.t1 AT5G03820 26.023 342 215 13 44 372 61 377 1.52e-20 92.8
MS.gene03990.t1 AT1G75930 25.000 364 213 15 28 372 13 335 2.81e-20 91.3
MS.gene03990.t1 AT2G19010 27.457 346 201 13 46 379 62 369 9.55e-20 90.5
MS.gene03990.t1 AT2G19060 26.513 347 205 14 46 379 32 341 1.05e-19 89.7
MS.gene03990.t1 AT2G19010 27.666 347 199 14 46 379 32 339 1.21e-19 89.7
MS.gene03990.t1 AT3G50400 27.397 365 219 14 30 374 20 358 2.67e-19 89.0
MS.gene03990.t1 AT5G15720 25.362 276 184 8 44 310 30 292 2.75e-19 88.2
MS.gene03990.t1 AT2G31540 28.212 358 202 18 42 376 33 358 3.49e-19 88.6
MS.gene03990.t1 AT5G33370 25.731 342 220 11 43 374 29 346 4.10e-19 88.2
MS.gene03990.t1 AT1G58520 26.176 340 207 9 44 373 30 335 4.67e-19 87.8
MS.gene03990.t1 AT1G58525 26.176 340 207 9 44 373 30 335 4.67e-19 87.8
MS.gene03990.t1 AT3G09930 24.699 332 211 11 45 367 40 341 9.64e-19 87.0
MS.gene03990.t1 AT3G09930 24.699 332 211 11 45 367 40 341 9.64e-19 87.0
MS.gene03990.t1 AT1G33811 25.664 339 215 14 45 369 35 350 1.54e-18 86.7
MS.gene03990.t1 AT2G03980 26.488 336 213 11 42 368 41 351 1.89e-18 86.3
MS.gene03990.t1 AT2G03980 26.488 336 213 11 42 368 41 351 1.89e-18 86.3
MS.gene03990.t1 AT2G03980 26.488 336 213 11 42 368 41 351 1.89e-18 86.3
MS.gene03990.t1 AT2G03980 26.488 336 213 11 42 368 41 351 1.89e-18 86.3
MS.gene03990.t1 AT1G53940 30.435 276 168 11 43 310 38 297 1.99e-18 85.5
MS.gene03990.t1 AT2G24560 27.616 344 210 16 35 364 24 342 3.24e-18 85.5
MS.gene03990.t1 AT5G45670 24.706 340 210 11 46 369 31 340 2.02e-17 83.2
MS.gene03990.t1 AT1G29660 26.048 334 212 13 46 369 34 342 2.80e-17 82.8
MS.gene03990.t1 AT5G03610 24.000 375 250 12 3 373 7 350 2.95e-17 82.8
MS.gene03990.t1 AT1G54020 24.870 386 231 17 7 385 8 341 4.54e-17 82.4
MS.gene03990.t1 AT4G28780 26.361 349 221 14 43 379 30 354 5.32e-17 82.0
MS.gene03990.t1 AT5G55050 26.844 339 209 14 44 367 39 353 7.47e-17 81.6
MS.gene03990.t1 AT1G58430 26.225 347 210 15 42 371 33 350 1.49e-16 80.9
MS.gene03990.t1 AT1G71691 26.882 279 170 7 44 310 55 311 1.82e-16 80.1
MS.gene03990.t1 AT4G18970 24.189 339 213 10 46 369 30 339 1.95e-16 80.5
MS.gene03990.t1 AT2G19050 26.012 346 206 14 46 377 33 342 2.06e-16 80.1
MS.gene03990.t1 AT4G18970 24.260 338 212 10 46 368 30 338 2.16e-16 80.9
MS.gene03990.t1 AT3G43570 24.852 338 192 9 44 373 30 313 6.32e-16 78.6
MS.gene03990.t1 AT1G54010 26.361 349 200 16 39 371 31 338 1.21e-15 78.2
MS.gene03990.t1 AT5G15720 23.944 284 187 10 94 368 48 311 1.30e-15 77.8
MS.gene03990.t1 AT5G37690 24.157 356 222 14 34 371 13 338 5.83e-15 75.9
MS.gene03990.t1 AT1G75920 24.786 351 189 11 31 373 22 305 1.01e-14 74.7
MS.gene03990.t1 AT2G36325 24.316 329 213 12 45 367 48 346 2.78e-14 73.9
MS.gene03990.t1 AT3G14210 27.348 362 205 18 40 385 32 351 6.35e-14 73.2
MS.gene03990.t1 AT5G03600 23.243 370 236 10 4 367 15 342 7.16e-14 72.8
MS.gene03990.t1 AT1G54000 24.781 343 209 15 41 371 33 338 1.02e-13 72.4
MS.gene03990.t1 AT5G03600 24.852 338 194 14 45 367 15 307 4.94e-13 69.7
MS.gene03990.t1 AT3G43550 26.689 296 183 8 29 310 11 286 7.76e-13 68.9
MS.gene03990.t1 AT1G71691 24.579 297 180 10 91 374 1 266 1.63e-12 67.8
MS.gene03990.t1 AT1G54030 22.601 323 207 10 43 361 51 334 6.61e-12 67.0
MS.gene03990.t1 AT2G24560 27.241 290 180 13 35 310 24 296 1.17e-11 65.9
MS.gene03990.t1 AT3G14220 23.977 342 199 15 45 368 33 331 5.86e-11 63.9

Find 64 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCAAAATATATAAAT+TGG 0.130836 3.2:-54566313 MS.gene03990:CDS
ATTGCTCCTTCTTTGATTAA+TGG 0.131323 3.2:+54566801 None:intergenic
TACGAAGCCATCTTCAATTT+TGG 0.178136 3.2:-54567752 MS.gene03990:CDS
GCTGAATGCAGCAGCATTTC+CGG 0.257779 3.2:+54567712 None:intergenic
CACCCAATTGGAAAGTTTCC+AGG 0.330852 3.2:+54566765 None:intergenic
AAGTTGTTCATTGTAGTATT+CGG 0.350636 3.2:+54566656 None:intergenic
ATGCCTGAAAATAGTCCTTA+TGG 0.355145 3.2:-54567680 MS.gene03990:CDS
TATCAAACACCACAACAATA+TGG 0.370274 3.2:-54566549 MS.gene03990:intron
GCAATGGAGCTGGTGATTCC+TGG 0.371995 3.2:-54566783 MS.gene03990:CDS
CCCCTTTCTTCGTGTCTCCT+TGG 0.374519 3.2:+54567344 None:intergenic
CGAAAGCATTGTAAGCTATC+AGG 0.379885 3.2:+54566679 None:intergenic
ATTCCTGGAAACTTTCCAAT+TGG 0.402546 3.2:-54566768 MS.gene03990:CDS
TTGTTTATAGTGGGAGAGAT+TGG 0.429569 3.2:-54567054 MS.gene03990:CDS
AATATATTATCTTAGCTTGA+GGG 0.435747 3.2:+54566601 None:intergenic
CCCTTCAAAATATATAAATT+GGG 0.454082 3.2:-54566312 MS.gene03990:CDS
TTAAGGGAAGGATTTGCAAA+AGG 0.454628 3.2:+54566230 None:intergenic
TTCCTGGAAACTTTCCAATT+GGG 0.455772 3.2:-54566767 MS.gene03990:CDS
ACACCAGCATTACACCCAAT+TGG 0.462222 3.2:+54566753 None:intergenic
AATGTCGTTTCAATTTCAAA+TGG 0.463870 3.2:-54567821 MS.gene03990:CDS
AGAATCACCAAAATTGAAGA+TGG 0.466360 3.2:+54567745 None:intergenic
GCCAAGGAGACACGAAGAAA+GGG 0.468871 3.2:-54567345 MS.gene03990:CDS
GTTCAGCCATTAATCAAAGA+AGG 0.471614 3.2:-54566807 MS.gene03990:intron
GTGTAATAGATTCAACCAAT+GGG 0.476700 3.2:+54566968 None:intergenic
GGCTTCGTAAGGTAAAGAAT+TGG 0.479011 3.2:+54567766 None:intergenic
TAAGGGAAGGATTTGCAAAA+GGG 0.481951 3.2:+54566231 None:intergenic
ACTTACTTCAAACATCCATC+TGG 0.482860 3.2:-54567653 MS.gene03990:CDS
ACTTTAAGATTAACATGGTA+TGG 0.485552 3.2:+54566371 None:intergenic
AAAGAAGACTATGATGAACT+TGG 0.486886 3.2:-54566705 MS.gene03990:CDS
TTATAGTGGGAGAGATTGGT+GGG 0.487433 3.2:-54567050 MS.gene03990:CDS
TTGAAGTAAGTTGAGCCATA+AGG 0.494864 3.2:+54567665 None:intergenic
TTTCCAATTGGGTGTAATGC+TGG 0.500453 3.2:-54566756 MS.gene03990:CDS
AAAGCATGTTGTGGAGGAAG+TGG 0.510426 3.2:-54566395 MS.gene03990:CDS
TTTATAGTGGGAGAGATTGG+TGG 0.512093 3.2:-54567051 MS.gene03990:CDS
AGCCAAGGAGACACGAAGAA+AGG 0.513729 3.2:-54567346 MS.gene03990:CDS
TTCTAAGCTATATTGAAAAG+AGG 0.516067 3.2:+54566203 None:intergenic
ATCTTATAAGTTAATAGCAA+AGG 0.520142 3.2:-54566267 MS.gene03990:CDS
AATGAATGATCTGTGGTGTT+TGG 0.520693 3.2:+54567253 None:intergenic
TCTTATAAGTTAATAGCAAA+GGG 0.521089 3.2:-54566266 MS.gene03990:CDS
TTGTTGACATTCATATATGC+CGG 0.525369 3.2:+54567370 None:intergenic
AAATATATTATCTTAGCTTG+AGG 0.529592 3.2:+54566600 None:intergenic
AATATTTATTTCGCTCGTCG+TGG 0.531515 3.2:-54567286 MS.gene03990:CDS
TTAATTGTAGCTGAGGCATA+CGG 0.536180 3.2:-54567406 MS.gene03990:intron
AGTGTAATAGATTCAACCAA+TGG 0.543554 3.2:+54566967 None:intergenic
ATAGCAAAGGGACTAGTTGA+AGG 0.549807 3.2:-54566254 MS.gene03990:CDS
AAAACCACATGTGAAGGTGA+TGG 0.559909 3.2:+54567850 None:intergenic
TCAAAATATATAAATTGGGA+TGG 0.562252 3.2:-54566308 MS.gene03990:CDS
CAAAGAAGGAGCAATGGAGC+TGG 0.564738 3.2:-54566793 MS.gene03990:CDS
GAATGATCTGTGGTGTTTGG+TGG 0.570728 3.2:+54567256 None:intergenic
ATTAATCAAAGAAGGAGCAA+TGG 0.580572 3.2:-54566799 MS.gene03990:CDS
CATTGCGTGTGCAACTTGAG+TGG 0.582672 3.2:-54567234 MS.gene03990:CDS
AAGAAGACTATGATGAACTT+GGG 0.591953 3.2:-54566704 MS.gene03990:CDS
CCATTCGATAAACGTCCAGA+TGG 0.592371 3.2:+54567638 None:intergenic
TTTATGTCTTAATGTCTCTG+TGG 0.592766 3.2:+54566626 None:intergenic
GGTGATTCTATAAGTGACAC+CGG 0.593539 3.2:-54567731 MS.gene03990:CDS
CCATCTGGACGTTTATCGAA+TGG 0.593553 3.2:-54567638 MS.gene03990:CDS
CTCCACACACCATATTGTTG+TGG 0.599527 3.2:+54566540 None:intergenic
AAATTGAAGATGGCTTCGTA+AGG 0.607757 3.2:+54567755 None:intergenic
ATGAATGTCAACAATAGCCA+AGG 0.610103 3.2:-54567361 MS.gene03990:CDS
CCAAGGAGACACGAAGAAAG+GGG 0.652855 3.2:-54567344 MS.gene03990:CDS
ATTGATATAACATACGATGG+TGG 0.657430 3.2:+54566942 None:intergenic
TGTAATAGATTCAACCAATG+GGG 0.661230 3.2:+54566969 None:intergenic
AAAATACTTTAAGATTAACA+TGG 0.667183 3.2:+54566366 None:intergenic
GTAATAGATTCAACCAATGG+GGG 0.681881 3.2:+54566970 None:intergenic
CACACGCAATGAATGATCTG+TGG 0.710194 3.2:+54567246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGAAAGTAAAAAAAAA+TGG - chr3.2:54566533-54566552 MS.gene03990:intron 10.0%
!! AATTTGACAAAAATAAATTA+TGG + chr3.2:54567594-54567613 None:intergenic 10.0%
!! AAAAAATCATTGTTTATAGT+GGG - chr3.2:54567017-54567036 MS.gene03990:CDS 15.0%
!! TTAAAACAAACAAAATATGT+AGG + chr3.2:54566927-54566946 None:intergenic 15.0%
!!! AAAATACTTTAAGATTAACA+TGG + chr3.2:54567717-54567736 None:intergenic 15.0%
!! AAAATTGATATAACATACGA+TGG + chr3.2:54567144-54567163 None:intergenic 20.0%
!! ACCCTTCAAAATATATAAAT+TGG - chr3.2:54567767-54567786 MS.gene03990:CDS 20.0%
!! ATCTTATAAGTTAATAGCAA+AGG - chr3.2:54567813-54567832 MS.gene03990:CDS 20.0%
!! ATTCTTGGATAAATGTAATA+GGG - chr3.2:54567231-54567250 MS.gene03990:CDS 20.0%
!! CAAAAAATCATTGTTTATAG+TGG - chr3.2:54567016-54567035 MS.gene03990:CDS 20.0%
!! CCCTTCAAAATATATAAATT+GGG - chr3.2:54567768-54567787 MS.gene03990:CDS 20.0%
!! GACTAAATGAATATTATTCT+TGG - chr3.2:54567216-54567235 MS.gene03990:CDS 20.0%
!! TATTCTTGGATAAATGTAAT+AGG - chr3.2:54567230-54567249 MS.gene03990:CDS 20.0%
!! TCAAAATATATAAATTGGGA+TGG - chr3.2:54567772-54567791 MS.gene03990:CDS 20.0%
!! TCTTATAAGTTAATAGCAAA+GGG - chr3.2:54567814-54567833 MS.gene03990:CDS 20.0%
!! TTTATGTAAATTAATGATGC+AGG - chr3.2:54567634-54567653 MS.gene03990:CDS 20.0%
!!! AAATATATTATCTTAGCTTG+AGG + chr3.2:54567483-54567502 None:intergenic 20.0%
!!! AATATATTATCTTAGCTTGA+GGG + chr3.2:54567482-54567501 None:intergenic 20.0%
!!! ATTTATATATTTTGAAGGGT+CGG + chr3.2:54567767-54567786 None:intergenic 20.0%
!!! CCCAATTTATATATTTTGAA+GGG + chr3.2:54567771-54567790 None:intergenic 20.0%
!!! CGACTAATTATAGATTTTAT+AGG - chr3.2:54566466-54566485 MS.gene03990:intron 20.0%
!!! GTTAATCTTAAAGTATTTTG+TGG - chr3.2:54567718-54567737 MS.gene03990:CDS 20.0%
!!! TCCCAATTTATATATTTTGA+AGG + chr3.2:54567772-54567791 None:intergenic 20.0%
!!! TTAATTGAGCTTAGTTTTTA+TGG + chr3.2:54567190-54567209 None:intergenic 20.0%
! AAGTTGTTCATTGTAGTATT+CGG + chr3.2:54567427-54567446 None:intergenic 25.0%
! TTCATGTGTAAAAGCAAAAA+AGG - chr3.2:54566887-54566906 MS.gene03990:intron 25.0%
!! AATGTCGTTTCAATTTCAAA+TGG - chr3.2:54566259-54566278 MS.gene03990:CDS 25.0%
!! TATTGAAAAGAGGAGTTTTA+AGG + chr3.2:54567870-54567889 None:intergenic 25.0%
!!! AAAAGTTGTGTTATTTCATG+AGG + chr3.2:54566963-54566982 None:intergenic 25.0%
!!! ACTTTAAGATTAACATGGTA+TGG + chr3.2:54567712-54567731 None:intergenic 25.0%
!!! ATTGAAAAGAGGAGTTTTAA+GGG + chr3.2:54567869-54567888 None:intergenic 25.0%
!!! TCTTAAAGTATTTTGTGGAA+CGG - chr3.2:54567723-54567742 MS.gene03990:CDS 25.0%
!!! TTTATATATTTTGAAGGGTC+GGG + chr3.2:54567766-54567785 None:intergenic 25.0%
!!! TTTTTGCTTTTACACATGAA+TGG + chr3.2:54566887-54566906 None:intergenic 25.0%
AAAATGGCAATGCTAGAAAA+TGG - chr3.2:54566549-54566568 MS.gene03990:intron 30.0%
AAAGAAGACTATGATGAACT+TGG - chr3.2:54567375-54567394 MS.gene03990:CDS 30.0%
AAGAAGACTATGATGAACTT+GGG - chr3.2:54567376-54567395 MS.gene03990:CDS 30.0%
AGAATCACCAAAATTGAAGA+TGG + chr3.2:54566338-54566357 None:intergenic 30.0%
AGTGTAATAGATTCAACCAA+TGG + chr3.2:54567116-54567135 None:intergenic 30.0%
ATTAATCAAAGAAGGAGCAA+TGG - chr3.2:54567281-54567300 MS.gene03990:CDS 30.0%
ATTGATATAACATACGATGG+TGG + chr3.2:54567141-54567160 None:intergenic 30.0%
ATTGCTCCTTCTTTGATTAA+TGG + chr3.2:54567282-54567301 None:intergenic 30.0%
GTGTAATAGATTCAACCAAT+GGG + chr3.2:54567115-54567134 None:intergenic 30.0%
TATCAAACACCACAACAATA+TGG - chr3.2:54567531-54567550 MS.gene03990:intron 30.0%
TGTAATAGATTCAACCAATG+GGG + chr3.2:54567114-54567133 None:intergenic 30.0%
TTGTTGACATTCATATATGC+CGG + chr3.2:54566713-54566732 None:intergenic 30.0%
TTTATGTCTTAATGTCTCTG+TGG + chr3.2:54567457-54567476 None:intergenic 30.0%
! ATGGCAATGAGATTTTTGTT+CGG - chr3.2:54566278-54566297 MS.gene03990:CDS 30.0%
!! CTTAAAGTATTTTGTGGAAC+GGG - chr3.2:54567724-54567743 MS.gene03990:CDS 30.0%
!! TTATATATTTTGAAGGGTCG+GGG + chr3.2:54567765-54567784 None:intergenic 30.0%
!!! ACTCATTTTAATTGTAGCTG+AGG - chr3.2:54566667-54566686 MS.gene03990:CDS 30.0%
!!! TGCAGGTTTTATTTCTGATA+AGG - chr3.2:54567651-54567670 MS.gene03990:CDS 30.0%
AAATTGAAGATGGCTTCGTA+AGG + chr3.2:54566328-54566347 None:intergenic 35.0%
AATATTTATTTCGCTCGTCG+TGG - chr3.2:54566794-54566813 MS.gene03990:CDS 35.0%
AATGAATGATCTGTGGTGTT+TGG + chr3.2:54566830-54566849 None:intergenic 35.0%
ACTTACTTCAAACATCCATC+TGG - chr3.2:54566427-54566446 MS.gene03990:CDS 35.0%
ATGAATGTCAACAATAGCCA+AGG - chr3.2:54566719-54566738 MS.gene03990:CDS 35.0%
ATGCCTGAAAATAGTCCTTA+TGG - chr3.2:54566400-54566419 MS.gene03990:CDS 35.0%
ATTCCTGGAAACTTTCCAAT+TGG - chr3.2:54567312-54567331 MS.gene03990:CDS 35.0%
GTAATAGATTCAACCAATGG+GGG + chr3.2:54567113-54567132 None:intergenic 35.0%
GTTCAGCCATTAATCAAAGA+AGG - chr3.2:54567273-54567292 MS.gene03990:CDS 35.0%
TAAGGGAAGGATTTGCAAAA+GGG + chr3.2:54567852-54567871 None:intergenic 35.0%
TCCAAAAAAACCACATGTGA+AGG + chr3.2:54566239-54566258 None:intergenic 35.0%
TTAAGGGAAGGATTTGCAAA+AGG + chr3.2:54567853-54567872 None:intergenic 35.0%
TTAATTGTAGCTGAGGCATA+CGG - chr3.2:54566674-54566693 MS.gene03990:CDS 35.0%
TTCATATATGCCGGCAAAAA+TGG + chr3.2:54566704-54566723 None:intergenic 35.0%
TTCCTGGAAACTTTCCAATT+GGG - chr3.2:54567313-54567332 MS.gene03990:CDS 35.0%
! TACGAAGCCATCTTCAATTT+TGG - chr3.2:54566328-54566347 MS.gene03990:CDS 35.0%
! TGGCAATGAGATTTTTGTTC+GGG - chr3.2:54566279-54566298 MS.gene03990:CDS 35.0%
! TTGAAGTAAGTTGAGCCATA+AGG + chr3.2:54566418-54566437 None:intergenic 35.0%
! TTGTTTATAGTGGGAGAGAT+TGG - chr3.2:54567026-54567045 MS.gene03990:CDS 35.0%
!! ATACGGATTACCATTTTTGC+CGG - chr3.2:54566691-54566710 MS.gene03990:CDS 35.0%
!! ATTTTGAAAGCATGTTGTGG+AGG - chr3.2:54567679-54567698 MS.gene03990:CDS 35.0%
!! GAGATTTTGAAAGCATGTTG+TGG - chr3.2:54567676-54567695 MS.gene03990:CDS 35.0%
!! TAAGGACTATTTTCAGGCAT+AGG + chr3.2:54566400-54566419 None:intergenic 35.0%
!!! AAAAGAGGAGTTTTAAGGGA+AGG + chr3.2:54567865-54567884 None:intergenic 35.0%
!!! ACCTTCACATGTGGTTTTTT+TGG - chr3.2:54566235-54566254 MS.gene03990:CDS 35.0%
AAAACCACATGTGAAGGTGA+TGG + chr3.2:54566233-54566252 None:intergenic 40.0%
AAGAAAAGTTGTTCCCCCAT+TGG - chr3.2:54567097-54567116 MS.gene03990:intron 40.0%
GGCTTCGTAAGGTAAAGAAT+TGG + chr3.2:54566317-54566336 None:intergenic 40.0%
GGTGATTCTATAAGTGACAC+CGG - chr3.2:54566349-54566368 MS.gene03990:CDS 40.0%
TTTCCAATTGGGTGTAATGC+TGG - chr3.2:54567324-54567343 MS.gene03990:CDS 40.0%
! GAGCCATAAGGACTATTTTC+AGG + chr3.2:54566406-54566425 None:intergenic 40.0%
! GGGGTAAATTTTGCATTTGC+AGG - chr3.2:54566755-54566774 MS.gene03990:CDS 40.0%
! TTATAGTGGGAGAGATTGGT+GGG - chr3.2:54567030-54567049 MS.gene03990:CDS 40.0%
! TTTATAGTGGGAGAGATTGG+TGG - chr3.2:54567029-54567048 MS.gene03990:CDS 40.0%
! TTTTCCATCACCTTCACATG+TGG - chr3.2:54566226-54566245 MS.gene03990:CDS 40.0%
!! ATAGCAAAGGGACTAGTTGA+AGG - chr3.2:54567826-54567845 MS.gene03990:CDS 40.0%
!! CGAAAGCATTGTAAGCTATC+AGG + chr3.2:54567404-54567423 None:intergenic 40.0%
AAAGCATGTTGTGGAGGAAG+TGG - chr3.2:54567685-54567704 MS.gene03990:CDS 45.0%
ACACCAGCATTACACCCAAT+TGG + chr3.2:54567330-54567349 None:intergenic 45.0%
CACACGCAATGAATGATCTG+TGG + chr3.2:54566837-54566856 None:intergenic 45.0%
CACCACAACAATATGGTGTG+TGG - chr3.2:54567538-54567557 MS.gene03990:intron 45.0%
CACCCAATTGGAAAGTTTCC+AGG + chr3.2:54567318-54567337 None:intergenic 45.0%
CCATCTGGACGTTTATCGAA+TGG - chr3.2:54566442-54566461 MS.gene03990:intron 45.0%
CCATTCGATAAACGTCCAGA+TGG + chr3.2:54566445-54566464 None:intergenic 45.0%
CTCCACACACCATATTGTTG+TGG + chr3.2:54567543-54567562 None:intergenic 45.0%
GAATGATCTGTGGTGTTTGG+TGG + chr3.2:54566827-54566846 None:intergenic 45.0%
AGCCAAGGAGACACGAAGAA+AGG - chr3.2:54566734-54566753 MS.gene03990:CDS 50.0%
CAAAGAAGGAGCAATGGAGC+TGG - chr3.2:54567287-54567306 MS.gene03990:CDS 50.0%
CATTGCGTGTGCAACTTGAG+TGG - chr3.2:54566846-54566865 MS.gene03990:intron 50.0%
CCAAGGAGACACGAAGAAAG+GGG - chr3.2:54566736-54566755 MS.gene03990:CDS 50.0%
GCCAAGGAGACACGAAGAAA+GGG - chr3.2:54566735-54566754 MS.gene03990:CDS 50.0%
GCTGAATGCAGCAGCATTTC+CGG + chr3.2:54566371-54566390 None:intergenic 50.0%
CCCCTTTCTTCGTGTCTCCT+TGG + chr3.2:54566739-54566758 None:intergenic 55.0%
GCAATGGAGCTGGTGATTCC+TGG - chr3.2:54567297-54567316 MS.gene03990:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 54566205 54567897 54566205 ID=MS.gene03990
chr3.2 mRNA 54566205 54567897 54566205 ID=MS.gene03990.t1;Parent=MS.gene03990
chr3.2 exon 54567615 54567897 54567615 ID=MS.gene03990.t1.exon1;Parent=MS.gene03990.t1
chr3.2 CDS 54567615 54567897 54567615 ID=cds.MS.gene03990.t1;Parent=MS.gene03990.t1
chr3.2 exon 54567194 54567418 54567194 ID=MS.gene03990.t1.exon2;Parent=MS.gene03990.t1
chr3.2 CDS 54567194 54567418 54567194 ID=cds.MS.gene03990.t1;Parent=MS.gene03990.t1
chr3.2 exon 54566957 54567102 54566957 ID=MS.gene03990.t1.exon3;Parent=MS.gene03990.t1
chr3.2 CDS 54566957 54567102 54566957 ID=cds.MS.gene03990.t1;Parent=MS.gene03990.t1
chr3.2 exon 54566550 54566823 54566550 ID=MS.gene03990.t1.exon4;Parent=MS.gene03990.t1
chr3.2 CDS 54566550 54566823 54566550 ID=cds.MS.gene03990.t1;Parent=MS.gene03990.t1
chr3.2 exon 54566205 54566446 54566205 ID=MS.gene03990.t1.exon5;Parent=MS.gene03990.t1
chr3.2 CDS 54566205 54566446 54566205 ID=cds.MS.gene03990.t1;Parent=MS.gene03990.t1
Gene Sequence

>MS.gene03990

ATGGTGATGATATTCATTATCTTTTCCATCACCTTCACATGTGGTTTTTTTGGAAATGTCGTTTCAATTTCAAATGGCAATGAGATTTTTGTTCGGGATGAGACATATGCCAATTCTTTACCTTACGAAGCCATCTTCAATTTTGGTGATTCTATAAGTGACACCGGAAATGCTGCTGCATTCAGCGACAAACCTATGCCTGAAAATAGTCCTTATGGCTCAACTTACTTCAAACATCCATCTGGACGTTTATCGAATGGACGACTAATTATAGATTTTATAGGTAATTTTACTCTTCTTTTTTTAAGTTTGTTCAATAAGATTTTCTAATATGAAAGTAAAAAAAAATGGCAATGCTAGAAAATGGTATAACATGCTCTAGTTAATATAGTTTGTTAGAATCGTCAAAATTATTAAATCTTAAAGTCAATATATTTATGATTGAAAAATTTACAAGATTGTACTCATTTTAATTGTAGCTGAGGCATACGGATTACCATTTTTGCCGGCATATATGAATGTCAACAATAGCCAAGGAGACACGAAGAAAGGGGTAAATTTTGCATTTGCAGGTGCTAGTGCACTTAAAAATATTTATTTCGCTCGTCGTGGAATGATGCCACCAAACACCACAGATCATTCATTGCGTGTGCAACTTGAGTGGTTTAAGAAACTAAAGCCATTCATGTGTAAAAGCAAAAAAGGTTTCATTTTAACTACCTACATATTTTGTTTGTTTTAAATATATAAATCTTCCTCATGAAATAACACAACTTTTGTTATGATGTGTGACAGAATGTACTAGCTACTTCAAAAAATCATTGTTTATAGTGGGAGAGATTGGTGGGAATGATGTTCTGCAGTATATCTCATCTAAAAAGTTTGCAGAAATAAGAAAAGTTGTTCCCCCATTGGTTGAATCTATTACACTTACCACCATCGTATGTTATATCAATTTTAAGTACTTGAATGTCTTCTTTAACCATAAAAACTAAGCTCAATTAAAGATATGACTAAATGAATATTATTCTTGGATAAATGTAATAGGGATTTTTTTCTATTTTTTATGTTCAGCCATTAATCAAAGAAGGAGCAATGGAGCTGGTGATTCCTGGAAACTTTCCAATTGGGTGTAATGCTGGTGTTTTGACAAATGTGATTAGTGAGAAGAAAGAAGACTATGATGAACTTGGGTGCCTGATAGCTTACAATGCTTTCGCCGAATACTACAATGAACAACTTAAAAATTCCACAGAGACATTAAGACATAAAAACCCTCAAGCTAAGATAATATATTTTGACTACTACAACAATCTCAAACGTTTATATCAAACACCACAACAATATGGTGTGTGGAGTTACTATTTTATTTTCTTGTTTATTTTACCATAATTTATTTTTGTCAAATTCTTTTGAACATGTACGTCATTTTATGTAAATTAATGATGCAGGTTTTATTTCTGATAAGGACGAGATTTTGAAAGCATGTTGTGGAGGAAGTGGACCATACCATGTTAATCTTAAAGTATTTTGTGGAACGGGTAGCTCAACAGTTTGCCCCGACCCTTCAAAATATATAAATTGGGATGGCTCACACTTAACTGAAGCATCTTATAAGTTAATAGCAAAGGGACTAGTTGAAGGCCCTTTTGCAAATCCTTCCCTTAAAACTCCTCTTTTCAATATAGCTTAG
Protein sequence

>MS.gene03990.t1

MVMIFIIFSITFTCGFFGNVVSISNGNEIFVRDETYANSLPYEAIFNFGDSISDTGNAAAFSDKPMPENSPYGSTYFKHPSGRLSNGRLIIDFIAEAYGLPFLPAYMNVNNSQGDTKKGVNFAFAGASALKNIYFARRGMMPPNTTDHSLRVQLEWFKKLKPFMCKSKKECTSYFKKSLFIVGEIGGNDVLQYISSKKFAEIRKVVPPLVESITLTTIPLIKEGAMELVIPGNFPIGCNAGVLTNVISEKKEDYDELGCLIAYNAFAEYYNEQLKNSTETLRHKNPQAKIIYFDYYNNLKRLYQTPQQYGFISDKDEILKACCGGSGPYHVNLKVFCGTGSSTVCPDPSKYINWDGSHLTEASYKLIAKGLVEGPFANPSLKTPLFNIA