Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040099.t1 | XP_024629046.1 | 89.1 | 421 | 43 | 1 | 1 | 418 | 1 | 421 | 1.90E-203 | 718.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040099.t1 | Q9LVJ0 | 67.8 | 366 | 109 | 5 | 55 | 418 | 63 | 421 | 7.9e-129 | 461.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040099.t1 | A0A396GSD0 | 89.1 | 421 | 43 | 1 | 1 | 418 | 1 | 421 | 1.4e-203 | 718.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72908 | MS.gene040099 | PPI |
| MS.gene040099 | MS.gene028007 | PPI |
| MS.gene98452 | MS.gene040099 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040099.t1 | MTR_6g071465 | 64.872 | 390 | 124 | 5 | 30 | 418 | 41 | 418 | 5.30e-165 | 470 |
| MS.gene040099.t1 | MTR_5g028020 | 44.496 | 427 | 198 | 11 | 4 | 416 | 7 | 408 | 1.44e-107 | 323 |
| MS.gene040099.t1 | MTR_8g012420 | 32.153 | 367 | 190 | 10 | 71 | 413 | 36 | 367 | 2.24e-51 | 177 |
| MS.gene040099.t1 | MTR_7g053530 | 28.010 | 382 | 211 | 14 | 51 | 413 | 1 | 337 | 2.89e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040099.t1 | AT1G48450 | 64.075 | 373 | 119 | 5 | 54 | 418 | 58 | 423 | 1.86e-164 | 469 |
| MS.gene040099.t1 | AT3G17800 | 67.486 | 366 | 110 | 5 | 55 | 418 | 63 | 421 | 9.98e-163 | 464 |
| MS.gene040099.t1 | AT3G17800 | 67.486 | 366 | 110 | 5 | 55 | 418 | 69 | 427 | 1.09e-162 | 464 |
| MS.gene040099.t1 | AT1G48450 | 59.191 | 272 | 96 | 5 | 54 | 317 | 58 | 322 | 8.80e-103 | 308 |
| MS.gene040099.t1 | AT1G48450 | 58.333 | 276 | 100 | 5 | 54 | 321 | 58 | 326 | 1.18e-101 | 306 |
| MS.gene040099.t1 | AT1G32160 | 43.358 | 399 | 175 | 11 | 36 | 416 | 39 | 404 | 3.83e-97 | 296 |
| MS.gene040099.t1 | AT3G07310 | 36.288 | 361 | 181 | 10 | 63 | 418 | 40 | 356 | 2.78e-53 | 182 |
| MS.gene040099.t1 | AT3G07310 | 36.879 | 282 | 133 | 8 | 142 | 418 | 11 | 252 | 2.61e-44 | 155 |
| MS.gene040099.t1 | AT5G48590 | 32.648 | 389 | 179 | 11 | 38 | 413 | 10 | 328 | 4.00e-44 | 157 |
Find 123 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAGCTTTGGTGGTTTA+AGG | 0.185413 | 4.4:-113640 | MS.gene040099:CDS |
| CTTTCCTCCTTCTAATAATA+AGG | 0.195362 | 4.4:-115031 | MS.gene040099:intron |
| GAATGAGAGCCAAGTGGTTT+TGG | 0.255570 | 4.4:+114146 | None:intergenic |
| AACCACTTGGCTCTCATTCT+TGG | 0.279367 | 4.4:-114142 | MS.gene040099:CDS |
| CTCACGTGTGATAACCATTC+CGG | 0.313242 | 4.4:+113697 | None:intergenic |
| GATAGTACCTTATTATTAGA+AGG | 0.339689 | 4.4:+115024 | None:intergenic |
| ATCTTATTGTTGCGTATCTC+TGG | 0.348662 | 4.4:+113774 | None:intergenic |
| AAGCACACAGAGGCATTGTT+TGG | 0.370683 | 4.4:-113725 | MS.gene040099:CDS |
| TCGACCCTACCAGTTGCATC+TGG | 0.375048 | 4.4:+114232 | None:intergenic |
| ACTTCTCCAGCTGGAACCTT+TGG | 0.389283 | 4.4:+114014 | None:intergenic |
| GCAATCTTATGAGAAGAGTC+TGG | 0.407257 | 4.4:+114637 | None:intergenic |
| GAAACCATCAAAATTAGCTT+TGG | 0.409557 | 4.4:-113650 | MS.gene040099:CDS |
| ATACGCAACAATAAGATCTA+AGG | 0.415923 | 4.4:-113768 | MS.gene040099:CDS |
| GATGTCAGTCCTGGTGGATT+TGG | 0.419214 | 4.4:-113857 | MS.gene040099:CDS |
| ATTGGTTGTGCAAAAGTTCA+TGG | 0.419257 | 4.4:-114287 | MS.gene040099:CDS |
| ACCATCAAAATTAGCTTTGG+TGG | 0.419551 | 4.4:-113647 | MS.gene040099:CDS |
| ATGTTGTAGGAGAAGGATCT+TGG | 0.432474 | 4.4:+114476 | None:intergenic |
| CCACCGCAGCAGGCACAAGA+TGG | 0.439006 | 4.4:+114554 | None:intergenic |
| CCAGGCCAAGTAGATACTTC+AGG | 0.441052 | 4.4:+113884 | None:intergenic |
| CAACTCAATTTAAGACGAAA+TGG | 0.445619 | 4.4:+113546 | None:intergenic |
| AGTTGCTGGTCCACCGCAGC+AGG | 0.446973 | 4.4:+114544 | None:intergenic |
| GTGAAGAAGGCGGCAGGATC+CGG | 0.448164 | 4.4:+115053 | None:intergenic |
| CCATCTTGTGCCTGCTGCGG+TGG | 0.450747 | 4.4:-114554 | MS.gene040099:CDS |
| CTCATCCTGAAGTATCTACT+TGG | 0.453032 | 4.4:-113889 | MS.gene040099:CDS |
| TCACGTGTGATAACCATTCC+GGG | 0.453796 | 4.4:+113698 | None:intergenic |
| ACAAGATCGGTGGATGTTGT+AGG | 0.463443 | 4.4:+114463 | None:intergenic |
| TCATGCTTATGCCTAGGGAT+GGG | 0.466457 | 4.4:+114751 | None:intergenic |
| CAGGAGAATTGCTGAGGTCA+AGG | 0.467848 | 4.4:-114350 | MS.gene040099:CDS |
| CCGTCTTCTTCAATTACAAC+CGG | 0.472072 | 4.4:-115072 | MS.gene040099:CDS |
| CTTCAGGATGAGATGTCACT+TGG | 0.474439 | 4.4:+113900 | None:intergenic |
| ATTGGAGCTGGAGAAGTTGC+TGG | 0.477347 | 4.4:+114530 | None:intergenic |
| TAGAAGGAGGAAAGTGAAGA+AGG | 0.482490 | 4.4:+115040 | None:intergenic |
| CATGCTTATGCCTAGGGATG+GGG | 0.483080 | 4.4:+114752 | None:intergenic |
| AGTTGCATCTGGGGTTATAG+AGG | 0.486143 | 4.4:+114243 | None:intergenic |
| CACCGCAGCAGGCACAAGAT+GGG | 0.488056 | 4.4:+114555 | None:intergenic |
| AAGAAGACGGCGGTGATAAG+AGG | 0.488970 | 4.4:+115085 | None:intergenic |
| TGGGTCTGGCGAGGAGGAAG+AGG | 0.490825 | 4.4:+114657 | None:intergenic |
| GATTCATGGTCAATTGAAGA+TGG | 0.491027 | 4.4:-114211 | MS.gene040099:CDS |
| CTCATGCTTATGCCTAGGGA+TGG | 0.491888 | 4.4:+114750 | None:intergenic |
| AAATGAAAGGAGGACAGCTC+TGG | 0.495873 | 4.4:-114326 | MS.gene040099:CDS |
| TCTATAACCCCAGATGCAAC+TGG | 0.497553 | 4.4:-114241 | MS.gene040099:CDS |
| CAACTGGTAGGGTCGATTCA+TGG | 0.499248 | 4.4:-114225 | MS.gene040099:CDS |
| CGACCCTACCAGTTGCATCT+GGG | 0.501121 | 4.4:+114233 | None:intergenic |
| CCTGGTGGCGATGTCAGTCC+TGG | 0.502730 | 4.4:-113866 | MS.gene040099:CDS |
| CCTGAAGTATCTACTTGGCC+TGG | 0.503117 | 4.4:-113884 | MS.gene040099:CDS |
| CAAATTAGCAAACTGAGGAT+AGG | 0.505986 | 4.4:-114088 | MS.gene040099:CDS |
| TTATGAGAAGAGTCTGGGTC+TGG | 0.513057 | 4.4:+114643 | None:intergenic |
| ATTGCTACAAATACGATAGC+AGG | 0.513749 | 4.4:-114712 | MS.gene040099:CDS |
| AACTATGTGATGTCCTTTGA+CGG | 0.517188 | 4.4:-113806 | MS.gene040099:CDS |
| GTCTCTCATGCTTATGCCTA+GGG | 0.517855 | 4.4:+114746 | None:intergenic |
| AAATTAGCAAACTGAGGATA+GGG | 0.522002 | 4.4:-114087 | MS.gene040099:CDS |
| GAGCAGCATCACGATCAGAT+TGG | 0.523258 | 4.4:+114512 | None:intergenic |
| TGAGAAAGAAACTGACCGAT+TGG | 0.524356 | 4.4:+114595 | None:intergenic |
| CTTCAGTTTCAGTCTCCAAT+CGG | 0.525591 | 4.4:-114610 | MS.gene040099:CDS |
| AGGAAAGTGAAGAAGGCGGC+AGG | 0.526126 | 4.4:+115047 | None:intergenic |
| TGATAAGAGGAGGACGGCTG+TGG | 0.526370 | 4.4:+115098 | None:intergenic |
| ACCGCAGCAGGCACAAGATG+GGG | 0.529440 | 4.4:+114556 | None:intergenic |
| CATCACGATCAGATTGGAGC+TGG | 0.529818 | 4.4:+114518 | None:intergenic |
| TATGCAGCATCAGTGATGTA+TGG | 0.532897 | 4.4:-114058 | MS.gene040099:CDS |
| CAGTTTGCTAATTTGAGCAA+CGG | 0.532928 | 4.4:+114096 | None:intergenic |
| CTGGAGGGTATCACCGTCAA+AGG | 0.539393 | 4.4:+113793 | None:intergenic |
| GAAGTGTCCACTTCACTACC+AGG | 0.539689 | 4.4:+113923 | None:intergenic |
| AGTCTCTCATGCTTATGCCT+AGG | 0.540729 | 4.4:+114745 | None:intergenic |
| GCACTTCCGTCCCCATCCCT+AGG | 0.541488 | 4.4:-114762 | MS.gene040099:CDS |
| AGTCCTGGTGGATTTGGCTA+TGG | 0.543579 | 4.4:-113851 | MS.gene040099:CDS |
| TGATGAATACTACTGTCGTC+TGG | 0.547484 | 4.4:+113968 | None:intergenic |
| TTATTGTTGCGTATCTCTGG+AGG | 0.549788 | 4.4:+113777 | None:intergenic |
| CCAGGACTGACATCGCCACC+AGG | 0.556642 | 4.4:+113866 | None:intergenic |
| ATTGTTTGGAAGACCCGGAA+TGG | 0.558540 | 4.4:-113711 | MS.gene040099:CDS |
| AGTTGACCAAAGGTTCCAGC+TGG | 0.559976 | 4.4:-114020 | MS.gene040099:CDS |
| TTCTTAAGCGAGTTGACCAA+AGG | 0.564871 | 4.4:-114030 | MS.gene040099:CDS |
| CTTTCATCGACTTCTCCAGC+TGG | 0.565573 | 4.4:+114005 | None:intergenic |
| ATTCATGGTCAATTGAAGAT+GGG | 0.567703 | 4.4:-114210 | MS.gene040099:CDS |
| CAATCTTATGAGAAGAGTCT+GGG | 0.567804 | 4.4:+114638 | None:intergenic |
| AAGCATGAGAGACTCTCTGT+TGG | 0.570763 | 4.4:-114736 | MS.gene040099:CDS |
| GAGGCATTGTTTGGAAGACC+CGG | 0.570792 | 4.4:-113716 | MS.gene040099:CDS |
| CTAACCTAGCCGTATGGACG+TGG | 0.574142 | 4.4:-115124 | None:intergenic |
| TCGGTGGATGTTGTAGGAGA+AGG | 0.576997 | 4.4:+114469 | None:intergenic |
| CATCACATAGTTACGCAACC+TGG | 0.581846 | 4.4:+113817 | None:intergenic |
| TAGTATTCATCAAACTATTG+TGG | 0.584247 | 4.4:-113957 | MS.gene040099:CDS |
| TAGCAAACTGAGGATAGGGC+AGG | 0.587895 | 4.4:-114083 | MS.gene040099:CDS |
| GACCCTACCAGTTGCATCTG+GGG | 0.591341 | 4.4:+114234 | None:intergenic |
| AACCCCAGATGCAACTGGTA+GGG | 0.592069 | 4.4:-114236 | MS.gene040099:CDS |
| AGAGTCTGGGTCTGGCGAGG+AGG | 0.592281 | 4.4:+114651 | None:intergenic |
| TAACCCCAGATGCAACTGGT+AGG | 0.592551 | 4.4:-114237 | MS.gene040099:CDS |
| GTGCTTCTCAATAATGCTCA+CGG | 0.595139 | 4.4:+113742 | None:intergenic |
| TATTGTTGCGTATCTCTGGA+GGG | 0.599151 | 4.4:+113778 | None:intergenic |
| GGAAGAGATCTTGTACACAT+TGG | 0.602232 | 4.4:-114305 | MS.gene040099:CDS |
| AGTACCTTATTATTAGAAGG+AGG | 0.610361 | 4.4:+115027 | None:intergenic |
| CCGCAGCAGGCACAAGATGG+GGG | 0.617352 | 4.4:+114557 | None:intergenic |
| AATGGTTATCACACGTGAGG+GGG | 0.623377 | 4.4:-113693 | MS.gene040099:CDS |
| CGCAACAATAAGATCTAAGG+AGG | 0.623407 | 4.4:-113765 | MS.gene040099:CDS |
| AGAAGAGTCTGGGTCTGGCG+AGG | 0.623678 | 4.4:+114648 | None:intergenic |
| ATACCATAGCCAAATCCACC+AGG | 0.624211 | 4.4:+113848 | None:intergenic |
| GGAATGGTTATCACACGTGA+GGG | 0.627905 | 4.4:-113695 | MS.gene040099:CDS |
| GTTGCATCTGGGGTTATAGA+GGG | 0.629178 | 4.4:+114244 | None:intergenic |
| CCTGTACAAAACAAGATCGG+TGG | 0.629414 | 4.4:+114453 | None:intergenic |
| TTTGCTAATTTGAGCAACGG+AGG | 0.631175 | 4.4:+114099 | None:intergenic |
| AAACCTGTACAAAACAAGAT+CGG | 0.632341 | 4.4:+114450 | None:intergenic |
| ATTGGAGACTGAAACTGAAG+AGG | 0.632400 | 4.4:+114613 | None:intergenic |
| GGTGGCGATGTCAGTCCTGG+TGG | 0.636075 | 4.4:-113863 | MS.gene040099:CDS |
| TTCAGGATGAGATGTCACTT+GGG | 0.636764 | 4.4:+113901 | None:intergenic |
| CGGAATGGTTATCACACGTG+AGG | 0.638347 | 4.4:-113696 | MS.gene040099:CDS |
| TGAGATGATCCAAAACCACT+TGG | 0.639402 | 4.4:-114155 | MS.gene040099:CDS |
| CTGAGGTCAAGGCAAATGAA+AGG | 0.640671 | 4.4:-114339 | MS.gene040099:CDS |
| GCTATGGTATAAAGCCGACC+AGG | 0.641906 | 4.4:-113835 | MS.gene040099:CDS |
| TGCAAGACCTGGTAGTGAAG+TGG | 0.643713 | 4.4:-113930 | MS.gene040099:CDS |
| TTGAGAGCTACGTGGACTCG+AGG | 0.645363 | 4.4:-113571 | MS.gene040099:CDS |
| AAGACGGCGGTGATAAGAGG+AGG | 0.647164 | 4.4:+115088 | None:intergenic |
| CCGGTTGTAATTGAAGAAGA+CGG | 0.652339 | 4.4:+115072 | None:intergenic |
| GAAGTATCTACTTGGCCTGG+TGG | 0.652940 | 4.4:-113881 | MS.gene040099:CDS |
| GAATGGTTATCACACGTGAG+GGG | 0.665737 | 4.4:-113694 | MS.gene040099:CDS |
| ACATAGTTACGCAACCTGGT+CGG | 0.667626 | 4.4:+113821 | None:intergenic |
| TACCAAGAATGAGAGCCAAG+TGG | 0.671508 | 4.4:+114140 | None:intergenic |
| CGGCGGTGATAAGAGGAGGA+CGG | 0.675716 | 4.4:+115092 | None:intergenic |
| CTTATGCCTAGGGATGGGGA+CGG | 0.676237 | 4.4:+114756 | None:intergenic |
| CTGGGATGTTGAGAGCTACG+TGG | 0.676347 | 4.4:-113579 | MS.gene040099:CDS |
| AGGTCAAGGCAAATGAAAGG+AGG | 0.687801 | 4.4:-114336 | MS.gene040099:CDS |
| ATTGTGGATGATGCAAGACC+TGG | 0.688318 | 4.4:-113941 | MS.gene040099:CDS |
| TTGCTCAAATTAGCAAACTG+AGG | 0.691447 | 4.4:-114093 | MS.gene040099:CDS |
| AAGGAGGAAAGTGAAGAAGG+CGG | 0.701835 | 4.4:+115043 | None:intergenic |
| CATTATTGAGAAGCACACAG+AGG | 0.764856 | 4.4:-113735 | MS.gene040099:CDS |
| GTTGTAATTGAAGAAGACGG+CGG | 0.772972 | 4.4:+115075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGCAAGATATTATACA+GGG | + | chr4.4:113815-113834 | None:intergenic | 20.0% |
| !! | TAAATTGCAAGATATTATAC+AGG | + | chr4.4:113816-113835 | None:intergenic | 20.0% |
| ! | GATAGTACCTTATTATTAGA+AGG | + | chr4.4:113640-113659 | None:intergenic | 25.0% |
| ! | TAGTATTCATCAAACTATTG+TGG | - | chr4.4:114704-114723 | MS.gene040099:CDS | 25.0% |
| ! | TCATATATTCTGTTTGTTTG+TGG | + | chr4.4:113848-113867 | None:intergenic | 25.0% |
| AAACCTGTACAAAACAAGAT+CGG | + | chr4.4:114214-114233 | None:intergenic | 30.0% | |
| AAATTAGCAAACTGAGGATA+GGG | - | chr4.4:114574-114593 | MS.gene040099:CDS | 30.0% | |
| AGGACAATAGATTGATGAAT+TGG | + | chr4.4:114240-114259 | None:intergenic | 30.0% | |
| AGTACCTTATTATTAGAAGG+AGG | + | chr4.4:113637-113656 | None:intergenic | 30.0% | |
| ATACGCAACAATAAGATCTA+AGG | - | chr4.4:114893-114912 | MS.gene040099:intron | 30.0% | |
| ATGAACAAGCAAGAAATAGT+AGG | + | chr4.4:114260-114279 | None:intergenic | 30.0% | |
| ATTCATGGTCAATTGAAGAT+GGG | - | chr4.4:114451-114470 | MS.gene040099:intron | 30.0% | |
| CTTTCCTCCTTCTAATAATA+AGG | - | chr4.4:113630-113649 | MS.gene040099:CDS | 30.0% | |
| TAATAATTACCACTAGTTGC+TGG | - | chr4.4:113725-113744 | MS.gene040099:CDS | 30.0% | |
| TGAAATATTGATCCATTCCT+TGG | - | chr4.4:113865-113884 | MS.gene040099:CDS | 30.0% | |
| ! | ACCTAAACAAAGCATTAGTT+TGG | + | chr4.4:113759-113778 | None:intergenic | 30.0% |
| ! | GAAACCATCAAAATTAGCTT+TGG | - | chr4.4:115011-115030 | MS.gene040099:intron | 30.0% |
| !! | AAATTAGCTTTGGTGGTTTA+AGG | - | chr4.4:115021-115040 | MS.gene040099:intron | 30.0% |
| !! | ACCAAACTAATGCTTTGTTT+AGG | - | chr4.4:113755-113774 | MS.gene040099:CDS | 30.0% |
| !! | ACTATCTTCTCAACTTTTTC+AGG | - | chr4.4:114292-114311 | MS.gene040099:CDS | 30.0% |
| !!! | TTTAAGGAGACTTGTTTTAG+AGG | - | chr4.4:115037-115056 | MS.gene040099:CDS | 30.0% |
| AACTATGTGATGTCCTTTGA+CGG | - | chr4.4:114855-114874 | MS.gene040099:intron | 35.0% | |
| AAGTTGAGAAGATAGTGCAA+TGG | + | chr4.4:114288-114307 | None:intergenic | 35.0% | |
| ATATTGATCCATTCCTTGGT+TGG | - | chr4.4:113869-113888 | MS.gene040099:CDS | 35.0% | |
| ATCTTATTGTTGCGTATCTC+TGG | + | chr4.4:114890-114909 | None:intergenic | 35.0% | |
| ATTGCTACAAATACGATAGC+AGG | - | chr4.4:113949-113968 | MS.gene040099:CDS | 35.0% | |
| ATTGGTTGTGCAAAAGTTCA+TGG | - | chr4.4:114374-114393 | MS.gene040099:intron | 35.0% | |
| CAAATTAGCAAACTGAGGAT+AGG | - | chr4.4:114573-114592 | MS.gene040099:CDS | 35.0% | |
| CAATCTTATGAGAAGAGTCT+GGG | + | chr4.4:114026-114045 | None:intergenic | 35.0% | |
| GATTCATGGTCAATTGAAGA+TGG | - | chr4.4:114450-114469 | MS.gene040099:intron | 35.0% | |
| TTGCTCAAATTAGCAAACTG+AGG | - | chr4.4:114568-114587 | MS.gene040099:CDS | 35.0% | |
| ! | ACCACCAAAGCTAATTTTGA+TGG | + | chr4.4:115018-115037 | None:intergenic | 35.0% |
| !! | ACCATCAAAATTAGCTTTGG+TGG | - | chr4.4:115014-115033 | MS.gene040099:intron | 35.0% |
| !! | CAGTTTGCTAATTTGAGCAA+CGG | + | chr4.4:114568-114587 | None:intergenic | 35.0% |
| !! | GACTTTTGGTTGTTTTCTCT+GGG | - | chr4.4:115064-115083 | MS.gene040099:CDS | 35.0% |
| !! | TGACTTTTGGTTGTTTTCTC+TGG | - | chr4.4:115063-115082 | MS.gene040099:CDS | 35.0% |
| ATGTTGTAGGAGAAGGATCT+TGG | + | chr4.4:114188-114207 | None:intergenic | 40.0% | |
| ATTGGAGACTGAAACTGAAG+AGG | + | chr4.4:114051-114070 | None:intergenic | 40.0% | |
| CCGGTTGTAATTGAAGAAGA+CGG | + | chr4.4:113592-113611 | None:intergenic | 40.0% | |
| CCGTCTTCTTCAATTACAAC+CGG | - | chr4.4:113589-113608 | MS.gene040099:CDS | 40.0% | |
| CGCAACAATAAGATCTAAGG+AGG | - | chr4.4:114896-114915 | MS.gene040099:intron | 40.0% | |
| CTTCAGTTTCAGTCTCCAAT+CGG | - | chr4.4:114051-114070 | MS.gene040099:CDS | 40.0% | |
| GCAATCTTATGAGAAGAGTC+TGG | + | chr4.4:114027-114046 | None:intergenic | 40.0% | |
| GGAAGAGATCTTGTACACAT+TGG | - | chr4.4:114356-114375 | MS.gene040099:intron | 40.0% | |
| GGGGGCAATTGATTATTCAA+AGG | - | chr4.4:114986-115005 | MS.gene040099:intron | 40.0% | |
| GTGCTTCTCAATAATGCTCA+CGG | + | chr4.4:114922-114941 | None:intergenic | 40.0% | |
| GTTGTAATTCCAGCAACTAG+TGG | + | chr4.4:113737-113756 | None:intergenic | 40.0% | |
| GTTGTAATTGAAGAAGACGG+CGG | + | chr4.4:113589-113608 | None:intergenic | 40.0% | |
| TAGAAGGAGGAAAGTGAAGA+AGG | + | chr4.4:113624-113643 | None:intergenic | 40.0% | |
| TATGCAGCATCAGTGATGTA+TGG | - | chr4.4:114603-114622 | MS.gene040099:CDS | 40.0% | |
| TATTGTTGCGTATCTCTGGA+GGG | + | chr4.4:114886-114905 | None:intergenic | 40.0% | |
| TGAGAAAGAAACTGACCGAT+TGG | + | chr4.4:114069-114088 | None:intergenic | 40.0% | |
| TGAGATGATCCAAAACCACT+TGG | - | chr4.4:114506-114525 | MS.gene040099:CDS | 40.0% | |
| TGATGAATACTACTGTCGTC+TGG | + | chr4.4:114696-114715 | None:intergenic | 40.0% | |
| TTATTGTTGCGTATCTCTGG+AGG | + | chr4.4:114887-114906 | None:intergenic | 40.0% | |
| TTTGCTAATTTGAGCAACGG+AGG | + | chr4.4:114565-114584 | None:intergenic | 40.0% | |
| ! | CATTATTGAGAAGCACACAG+AGG | - | chr4.4:114926-114945 | MS.gene040099:intron | 40.0% |
| ! | CTCATCCTGAAGTATCTACT+TGG | - | chr4.4:114772-114791 | MS.gene040099:intron | 40.0% |
| ! | TTCAGGATGAGATGTCACTT+GGG | + | chr4.4:114763-114782 | None:intergenic | 40.0% |
| ! | TTCTTAAGCGAGTTGACCAA+AGG | - | chr4.4:114631-114650 | MS.gene040099:CDS | 40.0% |
| !!! | CTTTTTCAGGAGAATTGCTG+AGG | - | chr4.4:114305-114324 | MS.gene040099:CDS | 40.0% |
| !!! | GAGAAGGATCTTGGTTTTGT+TGG | + | chr4.4:114179-114198 | None:intergenic | 40.0% |
| !!! | GTTTTAGAGGCTGTGACTTT+TGG | - | chr4.4:115050-115069 | MS.gene040099:CDS | 40.0% |
| AAATGAAAGGAGGACAGCTC+TGG | - | chr4.4:114335-114354 | MS.gene040099:CDS | 45.0% | |
| AAGCATGAGAGACTCTCTGT+TGG | - | chr4.4:113925-113944 | MS.gene040099:CDS | 45.0% | |
| AAGGAGGAAAGTGAAGAAGG+CGG | + | chr4.4:113621-113640 | None:intergenic | 45.0% | |
| AATGGTTATCACACGTGAGG+GGG | - | chr4.4:114968-114987 | MS.gene040099:intron | 45.0% | |
| ACAAGATCGGTGGATGTTGT+AGG | + | chr4.4:114201-114220 | None:intergenic | 45.0% | |
| ACATAGTTACGCAACCTGGT+CGG | + | chr4.4:114843-114862 | None:intergenic | 45.0% | |
| AGGTCAAGGCAAATGAAAGG+AGG | - | chr4.4:114325-114344 | MS.gene040099:CDS | 45.0% | |
| AGTCTCTCATGCTTATGCCT+AGG | + | chr4.4:113919-113938 | None:intergenic | 45.0% | |
| ATACCATAGCCAAATCCACC+AGG | + | chr4.4:114816-114835 | None:intergenic | 45.0% | |
| ATTGTGGATGATGCAAGACC+TGG | - | chr4.4:114720-114739 | MS.gene040099:CDS | 45.0% | |
| ATTGTTTGGAAGACCCGGAA+TGG | - | chr4.4:114950-114969 | MS.gene040099:intron | 45.0% | |
| CATCACATAGTTACGCAACC+TGG | + | chr4.4:114847-114866 | None:intergenic | 45.0% | |
| CCTGTACAAAACAAGATCGG+TGG | + | chr4.4:114211-114230 | None:intergenic | 45.0% | |
| CTCACGTGTGATAACCATTC+CGG | + | chr4.4:114967-114986 | None:intergenic | 45.0% | |
| CTGAGGTCAAGGCAAATGAA+AGG | - | chr4.4:114322-114341 | MS.gene040099:CDS | 45.0% | |
| CTTCAGGATGAGATGTCACT+TGG | + | chr4.4:114764-114783 | None:intergenic | 45.0% | |
| GAATGGTTATCACACGTGAG+GGG | - | chr4.4:114967-114986 | MS.gene040099:intron | 45.0% | |
| GGAATGGTTATCACACGTGA+GGG | - | chr4.4:114966-114985 | MS.gene040099:intron | 45.0% | |
| GTCTCTCATGCTTATGCCTA+GGG | + | chr4.4:113918-113937 | None:intergenic | 45.0% | |
| TACCAAGAATGAGAGCCAAG+TGG | + | chr4.4:114524-114543 | None:intergenic | 45.0% | |
| TCACGTGTGATAACCATTCC+GGG | + | chr4.4:114966-114985 | None:intergenic | 45.0% | |
| TCATGCTTATGCCTAGGGAT+GGG | + | chr4.4:113913-113932 | None:intergenic | 45.0% | |
| TCTATAACCCCAGATGCAAC+TGG | - | chr4.4:114420-114439 | MS.gene040099:intron | 45.0% | |
| TGATCCATTCCTTGGTTGGT+AGG | - | chr4.4:113873-113892 | MS.gene040099:CDS | 45.0% | |
| TTATGAGAAGAGTCTGGGTC+TGG | + | chr4.4:114021-114040 | None:intergenic | 45.0% | |
| ! | AACCACTTGGCTCTCATTCT+TGG | - | chr4.4:114519-114538 | MS.gene040099:CDS | 45.0% |
| ! | AGTTGCATCTGGGGTTATAG+AGG | + | chr4.4:114421-114440 | None:intergenic | 45.0% |
| ! | GAATGAGAGCCAAGTGGTTT+TGG | + | chr4.4:114518-114537 | None:intergenic | 45.0% |
| ! | GATTGTTTGTTGCTTGCTGC+TGG | - | chr4.4:113692-113711 | MS.gene040099:CDS | 45.0% |
| ! | GTTGCATCTGGGGTTATAGA+GGG | + | chr4.4:114420-114439 | None:intergenic | 45.0% |
| !! | AAGCACACAGAGGCATTGTT+TGG | - | chr4.4:114936-114955 | MS.gene040099:intron | 45.0% |
| !!! | CCACCGATCTTGTTTTGTAC+AGG | - | chr4.4:114208-114227 | MS.gene040099:CDS | 45.0% |
| AACCCCAGATGCAACTGGTA+GGG | - | chr4.4:114425-114444 | MS.gene040099:intron | 50.0% | |
| AAGAAGACGGCGGTGATAAG+AGG | + | chr4.4:113579-113598 | None:intergenic | 50.0% | |
| AAGTGCACACCTACCAACCA+AGG | + | chr4.4:113885-113904 | None:intergenic | 50.0% | |
| ACTTCTCCAGCTGGAACCTT+TGG | + | chr4.4:114650-114669 | None:intergenic | 50.0% | |
| AGTTGACCAAAGGTTCCAGC+TGG | - | chr4.4:114641-114660 | MS.gene040099:CDS | 50.0% | |
| ATTGGAGCTGGAGAAGTTGC+TGG | + | chr4.4:114134-114153 | None:intergenic | 50.0% | |
| CACACCTACCAACCAAGGAA+TGG | + | chr4.4:113880-113899 | None:intergenic | 50.0% | |
| CAGGAGAATTGCTGAGGTCA+AGG | - | chr4.4:114311-114330 | MS.gene040099:CDS | 50.0% | |
| CATCACGATCAGATTGGAGC+TGG | + | chr4.4:114146-114165 | None:intergenic | 50.0% | |
| CATGCTTATGCCTAGGGATG+GGG | + | chr4.4:113912-113931 | None:intergenic | 50.0% | |
| CCAGGCCAAGTAGATACTTC+AGG | + | chr4.4:114780-114799 | None:intergenic | 50.0% | |
| CGGAATGGTTATCACACGTG+AGG | - | chr4.4:114965-114984 | MS.gene040099:intron | 50.0% | |
| CTCATGCTTATGCCTAGGGA+TGG | + | chr4.4:113914-113933 | None:intergenic | 50.0% | |
| GAGCAGCATCACGATCAGAT+TGG | + | chr4.4:114152-114171 | None:intergenic | 50.0% | |
| GCTATGGTATAAAGCCGACC+AGG | - | chr4.4:114826-114845 | MS.gene040099:intron | 50.0% | |
| TAACCCCAGATGCAACTGGT+AGG | - | chr4.4:114424-114443 | MS.gene040099:intron | 50.0% | |
| TAGCAAACTGAGGATAGGGC+AGG | - | chr4.4:114578-114597 | MS.gene040099:CDS | 50.0% | |
| TCGGTGGATGTTGTAGGAGA+AGG | + | chr4.4:114195-114214 | None:intergenic | 50.0% | |
| ! | CAACTGGTAGGGTCGATTCA+TGG | - | chr4.4:114436-114455 | MS.gene040099:intron | 50.0% |
| ! | CCTGAAGTATCTACTTGGCC+TGG | - | chr4.4:114777-114796 | MS.gene040099:intron | 50.0% |
| ! | GAAGTATCTACTTGGCCTGG+TGG | - | chr4.4:114780-114799 | MS.gene040099:intron | 50.0% |
| ! | GAAGTGTCCACTTCACTACC+AGG | + | chr4.4:114741-114760 | None:intergenic | 50.0% |
| ! | TGCAAGACCTGGTAGTGAAG+TGG | - | chr4.4:114731-114750 | MS.gene040099:CDS | 50.0% |
| !! | AGTCCTGGTGGATTTGGCTA+TGG | - | chr4.4:114810-114829 | MS.gene040099:intron | 50.0% |
| !! | CTTTCATCGACTTCTCCAGC+TGG | + | chr4.4:114659-114678 | None:intergenic | 50.0% |
| !! | GAGGCATTGTTTGGAAGACC+CGG | - | chr4.4:114945-114964 | MS.gene040099:intron | 50.0% |
| !! | GATGTCAGTCCTGGTGGATT+TGG | - | chr4.4:114804-114823 | MS.gene040099:intron | 50.0% |
| AAGACGGCGGTGATAAGAGG+AGG | + | chr4.4:113576-113595 | None:intergenic | 55.0% | |
| AGGAAAGTGAAGAAGGCGGC+AGG | + | chr4.4:113617-113636 | None:intergenic | 55.0% | |
| CGACCCTACCAGTTGCATCT+GGG | + | chr4.4:114431-114450 | None:intergenic | 55.0% | |
| CTGGGATGTTGAGAGCTACG+TGG | - | chr4.4:115082-115101 | MS.gene040099:CDS | 55.0% | |
| CTTATGCCTAGGGATGGGGA+CGG | + | chr4.4:113908-113927 | None:intergenic | 55.0% | |
| GACCCTACCAGTTGCATCTG+GGG | + | chr4.4:114430-114449 | None:intergenic | 55.0% | |
| TCGACCCTACCAGTTGCATC+TGG | + | chr4.4:114432-114451 | None:intergenic | 55.0% | |
| TGATAAGAGGAGGACGGCTG+TGG | + | chr4.4:113566-113585 | None:intergenic | 55.0% | |
| TTGAGAGCTACGTGGACTCG+AGG | - | chr4.4:115090-115109 | MS.gene040099:CDS | 55.0% | |
| !! | CTGGAGGGTATCACCGTCAA+AGG | + | chr4.4:114871-114890 | None:intergenic | 55.0% |
| ACCGCAGCAGGCACAAGATG+GGG | + | chr4.4:114108-114127 | None:intergenic | 60.0% | |
| AGAAGAGTCTGGGTCTGGCG+AGG | + | chr4.4:114016-114035 | None:intergenic | 60.0% | |
| CACCGCAGCAGGCACAAGAT+GGG | + | chr4.4:114109-114128 | None:intergenic | 60.0% | |
| CGGCGGTGATAAGAGGAGGA+CGG | + | chr4.4:113572-113591 | None:intergenic | 60.0% | |
| GTGAAGAAGGCGGCAGGATC+CGG | + | chr4.4:113611-113630 | None:intergenic | 60.0% | |
| AGAGTCTGGGTCTGGCGAGG+AGG | + | chr4.4:114013-114032 | None:intergenic | 65.0% | |
| AGTTGCTGGTCCACCGCAGC+AGG | + | chr4.4:114120-114139 | None:intergenic | 65.0% | |
| CCACCGCAGCAGGCACAAGA+TGG | + | chr4.4:114110-114129 | None:intergenic | 65.0% | |
| CCAGGACTGACATCGCCACC+AGG | + | chr4.4:114798-114817 | None:intergenic | 65.0% | |
| CCATCTTGTGCCTGCTGCGG+TGG | - | chr4.4:114107-114126 | MS.gene040099:CDS | 65.0% | |
| CCCCCATCTTGTGCCTGCTG+CGG | - | chr4.4:114104-114123 | MS.gene040099:CDS | 65.0% | |
| CCGCAGCAGGCACAAGATGG+GGG | + | chr4.4:114107-114126 | None:intergenic | 65.0% | |
| GCACTTCCGTCCCCATCCCT+AGG | - | chr4.4:113899-113918 | MS.gene040099:CDS | 65.0% | |
| GGTGGCGATGTCAGTCCTGG+TGG | - | chr4.4:114798-114817 | MS.gene040099:intron | 65.0% | |
| TGGGTCTGGCGAGGAGGAAG+AGG | + | chr4.4:114007-114026 | None:intergenic | 65.0% | |
| ! | CCTGGTGGCGATGTCAGTCC+TGG | - | chr4.4:114795-114814 | MS.gene040099:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 113550 | 115133 | 113550 | ID=MS.gene040099 |
| chr4.4 | mRNA | 113550 | 115133 | 113550 | ID=MS.gene040099.t1;Parent=MS.gene040099 |
| chr4.4 | exon | 115032 | 115133 | 115032 | ID=MS.gene040099.t1.exon1;Parent=MS.gene040099.t1 |
| chr4.4 | CDS | 115032 | 115133 | 115032 | ID=cds.MS.gene040099.t1;Parent=MS.gene040099.t1 |
| chr4.4 | exon | 114454 | 114788 | 114454 | ID=MS.gene040099.t1.exon2;Parent=MS.gene040099.t1 |
| chr4.4 | CDS | 114454 | 114788 | 114454 | ID=cds.MS.gene040099.t1;Parent=MS.gene040099.t1 |
| chr4.4 | exon | 113550 | 114369 | 113550 | ID=MS.gene040099.t1.exon3;Parent=MS.gene040099.t1 |
| chr4.4 | CDS | 113550 | 114369 | 113550 | ID=cds.MS.gene040099.t1;Parent=MS.gene040099.t1 |
| Gene Sequence |
| Protein sequence |
