AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040421

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040421.t1 MTR_3g101030 80.706 425 65 3 39 446 5 429 0.0 678
MS.gene040421.t1 MTR_3g101050 72.991 448 67 7 1 445 1 397 0.0 607
MS.gene040421.t1 MTR_3g101010 80.679 383 70 2 66 446 9 389 0.0 598
MS.gene040421.t1 MTR_8g027395 67.000 400 121 4 49 446 7 397 0.0 524
MS.gene040421.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene040421.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 1.54e-179 507
MS.gene040421.t1 MTR_8g461160 65.816 392 130 2 57 444 1 392 1.18e-177 502
MS.gene040421.t1 MTR_8g027420 66.494 385 110 5 64 446 8 375 5.57e-175 494
MS.gene040421.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 4.04e-173 491
MS.gene040421.t1 MTR_3g048000 63.402 388 117 5 60 444 25 390 1.02e-168 479
MS.gene040421.t1 MTR_4g088525 65.940 367 117 3 81 445 8 368 4.34e-167 474
MS.gene040421.t1 MTR_7g451890 62.078 385 142 2 66 446 18 402 5.68e-167 475
MS.gene040421.t1 MTR_4g088535 65.026 386 109 6 58 441 5 366 3.11e-165 470
MS.gene040421.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 2.39e-164 469
MS.gene040421.t1 MTR_2g046030 63.896 385 126 5 66 444 9 386 3.20e-164 468
MS.gene040421.t1 MTR_7g047780 62.338 385 141 2 66 446 18 402 5.00e-164 468
MS.gene040421.t1 MTR_2g045980 63.896 385 126 5 66 444 9 386 1.02e-163 467
MS.gene040421.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 7.97e-162 462
MS.gene040421.t1 MTR_3g101130 60.622 386 148 3 62 446 7 389 2.11e-160 458
MS.gene040421.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 2.72e-150 432
MS.gene040421.t1 MTR_3g102920 58.575 379 117 4 70 444 66 408 1.64e-139 406
MS.gene040421.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 5.69e-139 399
MS.gene040421.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 6.96e-127 373
MS.gene040421.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 2.96e-124 363
MS.gene040421.t1 MTR_3g018747 68.846 260 63 3 188 444 9 253 5.39e-121 353
MS.gene040421.t1 MTR_3g100010 58.075 322 87 2 85 373 38 344 2.78e-116 344
MS.gene040421.t1 MTR_7g050830 55.340 309 107 2 68 356 22 319 1.80e-111 331
MS.gene040421.t1 MTR_3g015760 58.423 279 102 4 173 444 8 279 1.08e-98 297
MS.gene040421.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 1.63e-90 274
MS.gene040421.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 2.70e-86 263
MS.gene040421.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 4.33e-86 265
MS.gene040421.t1 MTR_3g114310 42.250 400 204 12 64 446 21 410 2.20e-85 268
MS.gene040421.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 8.84e-84 256
MS.gene040421.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 1.38e-79 250
MS.gene040421.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 2.94e-76 235
MS.gene040421.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 6.20e-62 198
MS.gene040421.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 1.26e-59 192
MS.gene040421.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 1.09e-56 185
MS.gene040421.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.19e-44 162
MS.gene040421.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 1.65e-24 97.4
MS.gene040421.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 5.80e-20 86.3
MS.gene040421.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 2.45e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040421.t1 AT1G47710 51.852 405 186 5 44 444 18 417 9.36e-143 414
MS.gene040421.t1 AT1G47710 52.551 392 178 4 57 444 3 390 2.16e-142 412
MS.gene040421.t1 AT3G45220 48.072 389 184 6 66 443 9 390 5.92e-120 355
MS.gene040421.t1 AT2G25240 47.656 384 185 7 66 443 9 382 6.55e-115 342
MS.gene040421.t1 AT2G26390 46.770 387 188 6 66 443 9 386 5.24e-113 338
MS.gene040421.t1 AT1G62170 42.779 367 183 4 85 445 88 433 5.13e-96 296
MS.gene040421.t1 AT2G14540 44.792 384 183 6 66 443 37 397 7.87e-95 291
MS.gene040421.t1 AT1G64030 42.708 384 193 7 66 443 9 371 7.10e-92 283
MS.gene040421.t1 AT2G35580 41.823 373 188 8 81 443 18 371 4.57e-89 276
MS.gene040421.t1 AT1G62170 39.250 400 183 5 85 445 88 466 4.75e-89 279
MS.gene040421.t1 AT1G64010 46.759 216 93 4 229 443 1 195 1.12e-59 194
MS.gene040421.t1 AT1G64010 46.766 201 85 4 244 443 2 181 1.18e-53 177
MS.gene040421.t1 AT1G62160 40.110 182 86 4 266 445 60 220 9.74e-35 129
MS.gene040421.t1 AT1G63280 52.174 115 51 2 188 300 8 120 4.69e-32 119
MS.gene040421.t1 AT1G51330 49.550 111 53 2 187 294 30 140 5.52e-24 99.4
MS.gene040421.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.13e-12 64.3

Find 102 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:+69067055 MS.gene040421:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:+69066954 MS.gene040421:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:-69067223 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:-69066474 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:+69067459 MS.gene040421:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:-69066351 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:+69067385 MS.gene040421:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:+69067694 MS.gene040421:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:-69066597 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:-69067384 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:+69067294 MS.gene040421:CDS
ACTGAAACAATCATCTTTGT+TGG 0.329190 7.2:+69067670 MS.gene040421:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:+69067315 MS.gene040421:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:-69066957 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:+69066684 MS.gene040421:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:+69067359 MS.gene040421:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:+69067268 MS.gene040421:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:-69067385 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:-69066459 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:-69067554 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:-69067116 None:intergenic
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:-69066717 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:-69066718 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:+69066481 MS.gene040421:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:-69066731 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:+69067001 MS.gene040421:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:+69067132 MS.gene040421:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:-69067129 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:+69067675 MS.gene040421:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:-69067640 None:intergenic
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:+69067002 MS.gene040421:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:+69067342 MS.gene040421:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:-69066364 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:+69067529 MS.gene040421:CDS
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:-69067639 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:+69066539 MS.gene040421:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:+69066722 MS.gene040421:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:-69067320 None:intergenic
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:+69067269 MS.gene040421:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:-69067295 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:+69066685 MS.gene040421:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:-69066665 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:+69066530 MS.gene040421:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:-69066563 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:+69066955 MS.gene040421:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:-69066592 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:-69067219 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:-69066341 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:+69067695 MS.gene040421:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:-69066555 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:-69066564 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:-69066417 None:intergenic
TGCAGTCACTAGCAGTGGCA+TGG 0.521843 7.2:+69067582 MS.gene040421:CDS
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:-69067610 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:-69066448 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:-69066512 None:intergenic
GCAGTCACTAGCAGTGGCAT+GGG 0.532869 7.2:+69067583 MS.gene040421:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:+69067214 MS.gene040421:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:+69066538 MS.gene040421:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:+69067062 MS.gene040421:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:-69066589 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:-69066627 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:-69066621 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:+69067418 MS.gene040421:CDS
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:-69066267 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:+69066654 MS.gene040421:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:+69066650 MS.gene040421:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:-69066421 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:-69067349 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:-69066375 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:+69066677 MS.gene040421:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:+69067349 MS.gene040421:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:+69066778 MS.gene040421:CDS
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:+69066638 MS.gene040421:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:-69066420 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:-69066562 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:-69067451 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:-69067706 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:+69066653 MS.gene040421:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:-69066634 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:-69066447 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:-69066261 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:-69066606 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:+69067411 MS.gene040421:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:-69066666 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:-69066433 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:+69067006 MS.gene040421:CDS
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:-69066406 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:+69066283 MS.gene040421:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:-69066374 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:+69066688 MS.gene040421:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:+69066974 MS.gene040421:CDS
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:-69066403 None:intergenic
AGTGACTGCATCAGATGCGG+TGG 0.649976 7.2:-69067569 None:intergenic
TCTGATGCAGTCACTAGCAG+TGG 0.651539 7.2:+69067577 MS.gene040421:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:-69066453 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:+69067023 MS.gene040421:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:-69066603 None:intergenic
GCTAGTGACTGCATCAGATG+CGG 0.677841 7.2:-69067572 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:+69067423 MS.gene040421:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:-69066677 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:-69067016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG + chr7.2:69066913-69066932 MS.gene040421:intron 10.0%
!! TACAAAAATTTAACAAAATC+AGG - chr7.2:69066852-69066871 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG - chr7.2:69067387-69067406 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG + chr7.2:69066922-69066941 MS.gene040421:intron 20.0%
! ATCTTATCAAGACAAGAATA+TGG + chr7.2:69066481-69066500 MS.gene040421:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG - chr7.2:69067119-69067138 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG + chr7.2:69067385-69067404 MS.gene040421:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG - chr7.2:69067388-69067407 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG - chr7.2:69067642-69067661 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG - chr7.2:69067643-69067662 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG + chr7.2:69067529-69067548 MS.gene040421:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG - chr7.2:69066821-69066840 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG - chr7.2:69066820-69066839 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr7.2:69067118-69067137 MS.gene040421:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG + chr7.2:69067084-69067103 MS.gene040421:CDS 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG - chr7.2:69067501-69067520 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG + chr7.2:69067196-69067215 MS.gene040421:CDS 25.0%
ACTGAAACAATCATCTTTGT+TGG + chr7.2:69067670-69067689 MS.gene040421:CDS 30.0%
ATATTGCTTATGGTTCTCTT+CGG - chr7.2:69066344-69066363 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG + chr7.2:69067001-69067020 MS.gene040421:CDS 30.0%
CTTGTCTTGATAAGATTCTT+TGG - chr7.2:69066477-69066496 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG + chr7.2:69066955-69066974 MS.gene040421:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG - chr7.2:69067132-69067151 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG + chr7.2:69066954-69066973 MS.gene040421:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG + chr7.2:69067002-69067021 MS.gene040421:CDS 30.0%
TTATCTTCACCTTGCTTATA+AGG - chr7.2:69067226-69067245 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG + chr7.2:69067132-69067151 MS.gene040421:CDS 30.0%
! GAAAAATGACTTTTGGATCA+AGG - chr7.2:69066322-69066341 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG - chr7.2:69066819-69066838 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG - chr7.2:69066462-69066481 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG - chr7.2:69066354-69066373 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG + chr7.2:69067675-69067694 MS.gene040421:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG - chr7.2:69066960-69066979 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG + chr7.2:69067459-69067478 MS.gene040421:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG - chr7.2:69066720-69066739 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG + chr7.2:69067269-69067288 MS.gene040421:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG + chr7.2:69066722-69066741 MS.gene040421:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr7.2:69067411-69067430 MS.gene040421:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG - chr7.2:69066721-69066740 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG + chr7.2:69067268-69067287 MS.gene040421:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG - chr7.2:69066329-69066348 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG - chr7.2:69066734-69066753 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG - chr7.2:69066566-69066585 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG - chr7.2:69067461-69067480 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG + chr7.2:69066778-69066797 MS.gene040421:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG + chr7.2:69067359-69067378 MS.gene040421:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG - chr7.2:69066377-69066396 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG - chr7.2:69066515-69066534 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG + chr7.2:69066685-69066704 MS.gene040421:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG + chr7.2:69067342-69067361 MS.gene040421:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG - chr7.2:69067352-69067371 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG + chr7.2:69067349-69067368 MS.gene040421:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG - chr7.2:69067222-69067241 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG - chr7.2:69066270-69066289 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG + chr7.2:69067055-69067074 MS.gene040421:CDS 40.0%
GTCTCCGTCATTCTACAAAA+CGG + chr7.2:69066638-69066657 MS.gene040421:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG - chr7.2:69067323-69067342 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG + chr7.2:69066684-69066703 MS.gene040421:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG - chr7.2:69066645-69066664 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG - chr7.2:69066567-69066586 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG + chr7.2:69067445-69067464 MS.gene040421:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG - chr7.2:69066565-69066584 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG + chr7.2:69067442-69067461 MS.gene040421:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG - chr7.2:69066451-69066470 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG - chr7.2:69066450-69066469 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG - chr7.2:69066680-69066699 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG + chr7.2:69066677-69066696 MS.gene040421:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG - chr7.2:69066378-69066397 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG - chr7.2:69066367-69066386 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG - chr7.2:69067613-69067632 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG - chr7.2:69066456-69066475 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG - chr7.2:69067454-69067473 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG - chr7.2:69066423-69066442 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG + chr7.2:69067418-69067437 MS.gene040421:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG + chr7.2:69066974-69066993 MS.gene040421:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG + chr7.2:69067062-69067081 MS.gene040421:CDS 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG + chr7.2:69067214-69067233 MS.gene040421:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG - chr7.2:69067273-69067292 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG - chr7.2:69066595-69066614 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG - chr7.2:69066637-69066656 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG + chr7.2:69067006-69067025 MS.gene040421:CDS 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG - chr7.2:69066600-69066619 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG + chr7.2:69067695-69067714 MS.gene040421:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG - chr7.2:69066424-69066443 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG + chr7.2:69066283-69066302 MS.gene040421:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG - chr7.2:69066264-69066283 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG + chr7.2:69067294-69067313 MS.gene040421:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG - chr7.2:69067298-69067317 None:intergenic 50.0%
GCTAGTGACTGCATCAGATG+CGG - chr7.2:69067575-69067594 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG + chr7.2:69067315-69067334 MS.gene040421:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG + chr7.2:69067023-69067042 MS.gene040421:CDS 50.0%
TCTGATGCAGTCACTAGCAG+TGG + chr7.2:69067577-69067596 MS.gene040421:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG - chr7.2:69066436-69066455 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG - chr7.2:69066409-69066428 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG + chr7.2:69066688-69066707 MS.gene040421:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG - chr7.2:69066630-69066649 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG - chr7.2:69066592-69066611 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG - chr7.2:69067277-69067296 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG - chr7.2:69066606-69066625 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG - chr7.2:69066609-69066628 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG - chr7.2:69067019-69067038 None:intergenic 55.0%
AGTGACTGCATCAGATGCGG+TGG - chr7.2:69067572-69067591 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr7.2:69067694-69067713 MS.gene040421:CDS 55.0%
GCAGTCACTAGCAGTGGCAT+GGG + chr7.2:69067583-69067602 MS.gene040421:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG - chr7.2:69066420-69066439 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG + chr7.2:69066530-69066549 MS.gene040421:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG + chr7.2:69067423-69067442 MS.gene040421:CDS 55.0%
TGCAGTCACTAGCAGTGGCA+TGG + chr7.2:69067582-69067601 MS.gene040421:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG - chr7.2:69066558-69066577 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG - chr7.2:69066669-69066688 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG - chr7.2:69066406-69066425 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG + chr7.2:69066650-69066669 MS.gene040421:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG - chr7.2:69066624-69066643 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG - chr7.2:69067557-69067576 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG + chr7.2:69066539-69066558 MS.gene040421:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG + chr7.2:69066654-69066673 MS.gene040421:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG + chr7.2:69066653-69066672 MS.gene040421:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG - chr7.2:69066668-69066687 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG + chr7.2:69066538-69066557 MS.gene040421:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69066236 69067720 69066236 ID=MS.gene040421
chr7.2 mRNA 69066236 69067720 69066236 ID=MS.gene040421.t1;Parent=MS.gene040421
chr7.2 exon 69066236 69066799 69066236 ID=MS.gene040421.t1.exon1;Parent=MS.gene040421.t1
chr7.2 CDS 69066236 69066799 69066236 ID=cds.MS.gene040421.t1;Parent=MS.gene040421.t1
chr7.2 exon 69066944 69067720 69066944 ID=MS.gene040421.t1.exon2;Parent=MS.gene040421.t1
chr7.2 CDS 69066944 69067720 69066944 ID=cds.MS.gene040421.t1;Parent=MS.gene040421.t1
Gene Sequence

>MS.gene040421

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCACTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGAAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene040421.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVTSSGMGFPTRLDFVADHPFLFMIREELTETIIFVGQVLNPLAG