AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040429.t1 MTR_3g101030 80.706 425 65 3 39 446 5 429 0.0 676
MS.gene040429.t1 MTR_3g101050 72.768 448 68 7 1 445 1 397 0.0 603
MS.gene040429.t1 MTR_3g101010 80.418 383 71 2 66 446 9 389 0.0 594
MS.gene040429.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 519
MS.gene040429.t1 MTR_8g027395 66.250 400 124 4 49 446 7 397 0.0 518
MS.gene040429.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 1.79e-179 506
MS.gene040429.t1 MTR_8g461160 65.561 392 131 3 57 444 1 392 3.49e-177 501
MS.gene040429.t1 MTR_8g027420 64.935 385 116 4 64 446 8 375 1.81e-171 486
MS.gene040429.t1 MTR_3g101180 64.070 398 131 4 57 444 3 398 3.80e-171 486
MS.gene040429.t1 MTR_3g048000 63.144 388 118 6 60 444 25 390 9.79e-167 474
MS.gene040429.t1 MTR_7g451890 61.818 385 143 2 66 446 18 402 3.72e-166 473
MS.gene040429.t1 MTR_7g047780 62.078 385 142 2 66 446 18 402 1.73e-164 469
MS.gene040429.t1 MTR_4g088525 65.395 367 119 4 81 445 8 368 3.39e-164 467
MS.gene040429.t1 MTR_2g046030 63.896 385 126 5 66 444 9 386 3.68e-164 468
MS.gene040429.t1 MTR_2g045980 63.896 385 126 5 66 444 9 386 1.20e-163 466
MS.gene040429.t1 MTR_4g088535 64.767 386 110 6 58 441 5 366 2.80e-163 465
MS.gene040429.t1 MTR_7g050810 61.440 389 138 3 66 446 20 404 4.70e-163 466
MS.gene040429.t1 MTR_7g050750 61.039 385 146 2 66 446 12 396 8.51e-161 459
MS.gene040429.t1 MTR_3g101130 60.052 388 151 3 60 446 5 389 7.47e-159 454
MS.gene040429.t1 MTR_3g015620 62.240 384 115 6 66 444 20 378 5.33e-149 429
MS.gene040429.t1 MTR_3g100995 74.902 255 63 1 192 446 11 264 7.81e-138 396
MS.gene040429.t1 MTR_3g102920 57.784 379 120 4 70 444 66 408 5.10e-136 397
MS.gene040429.t1 MTR_3g101200 55.014 369 141 4 78 444 45 390 3.09e-125 369
MS.gene040429.t1 MTR_3g101190 53.804 368 103 4 83 446 8 312 1.93e-122 359
MS.gene040429.t1 MTR_3g018747 68.462 260 64 3 188 444 9 253 6.67e-120 350
MS.gene040429.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 1.76e-115 342
MS.gene040429.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 7.45e-111 330
MS.gene040429.t1 MTR_3g015760 58.123 277 106 4 173 444 8 279 3.50e-98 296
MS.gene040429.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 4.83e-90 273
MS.gene040429.t1 MTR_3g101110 59.833 239 64 4 188 420 68 280 1.12e-84 261
MS.gene040429.t1 MTR_3g100520 59.910 222 72 3 229 446 1 209 1.86e-84 258
MS.gene040429.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 1.09e-83 256
MS.gene040429.t1 MTR_3g114310 41.250 400 208 11 64 446 21 410 2.38e-83 262
MS.gene040429.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 1.36e-79 250
MS.gene040429.t1 MTR_3g101020 65.946 185 38 2 262 446 1 160 2.72e-75 233
MS.gene040429.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 6.97e-62 198
MS.gene040429.t1 MTR_3g101150 61.783 157 54 2 294 444 1 157 6.26e-59 190
MS.gene040429.t1 MTR_3g102870 56.522 161 68 1 251 409 1 161 5.27e-55 181
MS.gene040429.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.06e-44 162
MS.gene040429.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 1.85e-24 97.1
MS.gene040429.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 6.03e-20 86.3
MS.gene040429.t1 MTR_3g101140 63.077 65 23 1 383 446 52 116 1.84e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040429.t1 AT1G47710 52.593 405 183 5 44 444 18 417 4.38e-146 423
MS.gene040429.t1 AT1G47710 53.316 392 175 4 57 444 3 390 1.27e-145 421
MS.gene040429.t1 AT3G45220 49.231 390 178 7 66 443 9 390 1.02e-122 362
MS.gene040429.t1 AT2G25240 48.177 384 183 7 66 443 9 382 8.71e-117 347
MS.gene040429.t1 AT2G26390 47.028 387 187 6 66 443 9 386 1.33e-114 342
MS.gene040429.t1 AT1G62170 43.360 369 178 5 85 445 88 433 2.82e-97 299
MS.gene040429.t1 AT2G14540 44.792 384 183 6 66 443 37 397 8.91e-96 294
MS.gene040429.t1 AT1G64030 42.969 384 192 7 66 443 9 371 1.04e-92 285
MS.gene040429.t1 AT1G62170 39.801 402 178 6 85 445 88 466 4.29e-90 281
MS.gene040429.t1 AT2G35580 42.440 377 180 10 81 443 18 371 5.59e-90 278
MS.gene040429.t1 AT1G64010 46.759 216 93 4 229 443 1 195 3.72e-60 195
MS.gene040429.t1 AT1G64010 46.766 201 85 4 244 443 2 181 5.26e-54 179
MS.gene040429.t1 AT1G62160 40.659 182 85 4 266 445 60 220 1.16e-35 131
MS.gene040429.t1 AT1G63280 52.174 115 51 2 188 300 8 120 3.62e-32 119
MS.gene040429.t1 AT1G51330 49.550 111 53 2 187 294 30 140 5.98e-24 99.0
MS.gene040429.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.72e-12 63.9

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:+68995329 MS.gene040429:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:+68995228 MS.gene040429:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:-68995497 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:-68994748 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:+68995733 MS.gene040429:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:-68994625 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:+68995659 MS.gene040429:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:+68995968 MS.gene040429:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:-68994871 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:-68995658 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:+68995568 MS.gene040429:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:+68995589 MS.gene040429:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:-68995231 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:+68994958 MS.gene040429:CDS
TGTTGCAGCCACCGCATCTA+TGG 0.363179 7.2:+68995835 MS.gene040429:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:+68995633 MS.gene040429:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:+68995542 MS.gene040429:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:-68995659 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:-68994733 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.389726 7.2:-68995828 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.396788 7.2:-68995390 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:+68995944 MS.gene040429:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:-68994991 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:-68994992 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:+68994755 MS.gene040429:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:-68995005 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:+68995275 MS.gene040429:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:+68995406 MS.gene040429:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:-68995403 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:+68995949 MS.gene040429:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:+68995276 MS.gene040429:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.445486 7.2:+68995616 MS.gene040429:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:-68994638 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:+68995803 MS.gene040429:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:-68995914 None:intergenic
GCATTCACTAGCAGTGGAAT+GGG 0.460465 7.2:+68995857 MS.gene040429:CDS
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:+68994813 MS.gene040429:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:+68994996 MS.gene040429:CDS
GTTGTCCAGTAACTCAGATT+CGG 0.482833 7.2:-68995594 None:intergenic
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:+68995543 MS.gene040429:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:-68995569 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:+68994959 MS.gene040429:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:-68994939 None:intergenic
GGCATTCACTAGCAGTGGAA+TGG 0.494436 7.2:+68995856 MS.gene040429:CDS
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:+68994804 MS.gene040429:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:-68994837 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:+68995229 MS.gene040429:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:-68994866 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:-68995493 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:-68994615 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:+68995969 MS.gene040429:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:-68994829 None:intergenic
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:+68995926 MS.gene040429:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:-68995913 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:-68994838 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:-68994691 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:-68995884 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:-68994722 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:-68994786 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:+68995488 MS.gene040429:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:+68994812 MS.gene040429:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:+68995336 MS.gene040429:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:-68994863 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:-68994901 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:-68994895 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:+68995692 MS.gene040429:CDS
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:-68994541 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:+68994928 MS.gene040429:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:+68994924 MS.gene040429:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:-68994695 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:-68995623 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:-68994649 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:+68994951 MS.gene040429:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:+68995623 MS.gene040429:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:+68995052 MS.gene040429:CDS
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:+68994912 MS.gene040429:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:-68994694 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:-68994836 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:-68995725 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:-68995980 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:+68994927 MS.gene040429:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:-68994908 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:-68994721 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:-68994535 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:-68994880 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:+68995685 MS.gene040429:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:-68994940 None:intergenic
TCTATGGCATTCACTAGCAG+TGG 0.610202 7.2:+68995851 MS.gene040429:CDS
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:-68994707 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:+68995280 MS.gene040429:CDS
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:-68994680 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:+68994557 MS.gene040429:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:-68994648 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:+68994962 MS.gene040429:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:+68995248 MS.gene040429:CDS
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:-68994677 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:-68994727 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:+68995297 MS.gene040429:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:-68994877 None:intergenic
AGTGAATGCCATAGATGCGG+TGG 0.685956 7.2:-68995843 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:+68995697 MS.gene040429:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:-68994951 None:intergenic
GCTAGTGAATGCCATAGATG+CGG 0.746693 7.2:-68995846 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:-68995290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG + chr7.2:68995187-68995206 MS.gene040429:intron 10.0%
!! TACAAAAATTTAACAAAATC+AGG - chr7.2:68995126-68995145 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG - chr7.2:68995661-68995680 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG - chr7.2:68995916-68995935 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG - chr7.2:68995917-68995936 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG + chr7.2:68995196-68995215 MS.gene040429:intron 20.0%
! ATCTTATCAAGACAAGAATA+TGG + chr7.2:68994755-68994774 MS.gene040429:CDS 25.0%
! ATGATTATAGAAGAATTGAC+TGG + chr7.2:68995926-68995945 MS.gene040429:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG - chr7.2:68995393-68995412 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG + chr7.2:68995659-68995678 MS.gene040429:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG - chr7.2:68995662-68995681 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG + chr7.2:68995803-68995822 MS.gene040429:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG - chr7.2:68995095-68995114 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG - chr7.2:68995094-68995113 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr7.2:68995392-68995411 MS.gene040429:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG + chr7.2:68995358-68995377 MS.gene040429:CDS 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG - chr7.2:68995775-68995794 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG + chr7.2:68995470-68995489 MS.gene040429:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG - chr7.2:68994618-68994637 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG + chr7.2:68995275-68995294 MS.gene040429:CDS 30.0%
CTTGTCTTGATAAGATTCTT+TGG - chr7.2:68994751-68994770 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG + chr7.2:68995229-68995248 MS.gene040429:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG - chr7.2:68995406-68995425 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG + chr7.2:68995228-68995247 MS.gene040429:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG + chr7.2:68995276-68995295 MS.gene040429:CDS 30.0%
TTATCTTCACCTTGCTTATA+AGG - chr7.2:68995500-68995519 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG + chr7.2:68995406-68995425 MS.gene040429:CDS 30.0%
! GAAAAATGACTTTTGGATCA+AGG - chr7.2:68994596-68994615 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG - chr7.2:68995093-68995112 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG - chr7.2:68994736-68994755 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG - chr7.2:68994628-68994647 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG + chr7.2:68995949-68995968 MS.gene040429:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG + chr7.2:68995944-68995963 MS.gene040429:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG - chr7.2:68995234-68995253 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG + chr7.2:68995733-68995752 MS.gene040429:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG - chr7.2:68994994-68995013 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG + chr7.2:68995543-68995562 MS.gene040429:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG + chr7.2:68994996-68995015 MS.gene040429:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr7.2:68995685-68995704 MS.gene040429:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG - chr7.2:68994995-68995014 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG + chr7.2:68995542-68995561 MS.gene040429:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG - chr7.2:68994603-68994622 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG - chr7.2:68995008-68995027 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG - chr7.2:68994840-68994859 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG - chr7.2:68995735-68995754 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG + chr7.2:68995052-68995071 MS.gene040429:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG + chr7.2:68995633-68995652 MS.gene040429:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG - chr7.2:68994651-68994670 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG - chr7.2:68994789-68994808 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG + chr7.2:68994959-68994978 MS.gene040429:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG + chr7.2:68995616-68995635 MS.gene040429:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG - chr7.2:68995626-68995645 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG + chr7.2:68995623-68995642 MS.gene040429:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG - chr7.2:68995496-68995515 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG - chr7.2:68994544-68994563 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG + chr7.2:68995329-68995348 MS.gene040429:CDS 40.0%
GTCTCCGTCATTCTACAAAA+CGG + chr7.2:68994912-68994931 MS.gene040429:CDS 40.0%
GTTGTCCAGTAACTCAGATT+CGG - chr7.2:68995597-68995616 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG + chr7.2:68994958-68994977 MS.gene040429:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG - chr7.2:68994919-68994938 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG - chr7.2:68994841-68994860 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG + chr7.2:68995719-68995738 MS.gene040429:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG - chr7.2:68994839-68994858 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG + chr7.2:68995716-68995735 MS.gene040429:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG - chr7.2:68994725-68994744 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG - chr7.2:68994724-68994743 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG - chr7.2:68994954-68994973 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG + chr7.2:68994951-68994970 MS.gene040429:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG - chr7.2:68994652-68994671 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG - chr7.2:68994641-68994660 None:intergenic 45.0%
GCATTCACTAGCAGTGGAAT+GGG + chr7.2:68995857-68995876 MS.gene040429:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG - chr7.2:68995887-68995906 None:intergenic 45.0%
GCTAGTGAATGCCATAGATG+CGG - chr7.2:68995849-68995868 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG - chr7.2:68994730-68994749 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG - chr7.2:68995728-68995747 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG - chr7.2:68994697-68994716 None:intergenic 45.0%
TCTATGGCATTCACTAGCAG+TGG + chr7.2:68995851-68995870 MS.gene040429:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG + chr7.2:68995692-68995711 MS.gene040429:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG + chr7.2:68995248-68995267 MS.gene040429:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG + chr7.2:68995336-68995355 MS.gene040429:CDS 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG + chr7.2:68995488-68995507 MS.gene040429:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG - chr7.2:68995547-68995566 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG - chr7.2:68994869-68994888 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG - chr7.2:68994911-68994930 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG + chr7.2:68995280-68995299 MS.gene040429:CDS 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG - chr7.2:68994874-68994893 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG + chr7.2:68995969-68995988 MS.gene040429:CDS 50.0%
AGTGAATGCCATAGATGCGG+TGG - chr7.2:68995846-68995865 None:intergenic 50.0%
CGTTGCTATGGTTGTTTGCG+AGG - chr7.2:68994698-68994717 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG + chr7.2:68994557-68994576 MS.gene040429:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG - chr7.2:68994538-68994557 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG + chr7.2:68995568-68995587 MS.gene040429:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG - chr7.2:68995572-68995591 None:intergenic 50.0%
GGCATTCACTAGCAGTGGAA+TGG + chr7.2:68995856-68995875 MS.gene040429:CDS 50.0%
GGCTTCCGAATCTGAGTTAC+TGG + chr7.2:68995589-68995608 MS.gene040429:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG + chr7.2:68995297-68995316 MS.gene040429:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG - chr7.2:68994710-68994729 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG - chr7.2:68994683-68994702 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG + chr7.2:68994962-68994981 MS.gene040429:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG - chr7.2:68994904-68994923 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG - chr7.2:68994866-68994885 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG - chr7.2:68995551-68995570 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG - chr7.2:68994880-68994899 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG - chr7.2:68994883-68994902 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG - chr7.2:68995293-68995312 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr7.2:68995968-68995987 MS.gene040429:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG - chr7.2:68994694-68994713 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG + chr7.2:68994804-68994823 MS.gene040429:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG + chr7.2:68995697-68995716 MS.gene040429:CDS 55.0%
TGTTGCAGCCACCGCATCTA+TGG + chr7.2:68995835-68995854 MS.gene040429:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG - chr7.2:68994832-68994851 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG - chr7.2:68994943-68994962 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG - chr7.2:68994680-68994699 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG + chr7.2:68994924-68994943 MS.gene040429:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG - chr7.2:68994898-68994917 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG - chr7.2:68995831-68995850 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG + chr7.2:68994813-68994832 MS.gene040429:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG + chr7.2:68994928-68994947 MS.gene040429:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG + chr7.2:68994927-68994946 MS.gene040429:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG - chr7.2:68994942-68994961 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG + chr7.2:68994812-68994831 MS.gene040429:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 68994510 68995994 68994510 ID=MS.gene040429
chr7.2 mRNA 68994510 68995994 68994510 ID=MS.gene040429.t1;Parent=MS.gene040429
chr7.2 exon 68994510 68995073 68994510 ID=MS.gene040429.t1.exon1;Parent=MS.gene040429.t1
chr7.2 CDS 68994510 68995073 68994510 ID=cds.MS.gene040429.t1;Parent=MS.gene040429.t1
chr7.2 exon 68995218 68995994 68995218 ID=MS.gene040429.t1.exon2;Parent=MS.gene040429.t1
chr7.2 CDS 68995218 68995994 68995218 ID=cds.MS.gene040429.t1;Parent=MS.gene040429.t1
Gene Sequence

>MS.gene040429

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATACCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGACAACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTATGGCATTCACTAGCAGTGGAATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene040429.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNTYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLDNKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASMAFTSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG