Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041446.t1 | XP_013458166.1 | 100 | 145 | 0 | 0 | 72 | 216 | 1 | 145 | 1.00E-83 | 319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041446.t1 | Q65WT0 | 88.3 | 145 | 17 | 0 | 72 | 216 | 1 | 145 | 6.6e-79 | 295.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041446.t1 | A0A072UR78 | 100.0 | 145 | 0 | 0 | 72 | 216 | 1 | 145 | 7.5e-84 | 319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene041446 | MS.gene86409 | PPI |
MS.gene041446 | MS.gene83541 | PPI |
MS.gene067412 | MS.gene041446 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041446.t1 | MTR_4g117260 | 100.000 | 145 | 0 | 0 | 72 | 216 | 1 | 145 | 6.18e-105 | 299 |
MS.gene041446.t1 | MTR_8g083120 | 96.552 | 145 | 5 | 0 | 72 | 216 | 1 | 145 | 6.52e-103 | 293 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041446.t1 | AT4G21110 | 86.207 | 145 | 20 | 0 | 72 | 216 | 1 | 145 | 2.52e-93 | 270 |
MS.gene041446.t1 | AT4G21110 | 86.207 | 145 | 20 | 0 | 72 | 216 | 1 | 145 | 2.52e-93 | 270 |
Find 61 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAAATTTCCTTTCTCTTA+TGG | 0.231250 | 8.2:-12072187 | None:intergenic |
TCAATTAATTCCCAGCCTTC+TGG | 0.234580 | 8.2:-12071924 | None:intergenic |
ACTCGGCTTGTCTTTACTTT+TGG | 0.267712 | 8.2:-12071894 | None:intergenic |
AAGGAAACAAGTCTAGTAAA+TGG | 0.284740 | 8.2:+12070007 | MS.gene041446:CDS |
TGTCTTCTCATTCTTCTTCT+CGG | 0.300836 | 8.2:+12070596 | MS.gene041446:CDS |
TTCTCCTCCCTGAGCTCCTT+GGG | 0.301872 | 8.2:-12073622 | None:intergenic |
CAAATACATAGCGGCTCTTC+TGG | 0.318337 | 8.2:-12072157 | None:intergenic |
CTTCTCCTCCCTGAGCTCCT+TGG | 0.345032 | 8.2:-12073623 | None:intergenic |
AAAGAAAATGTGAGACTTTG+TGG | 0.382714 | 8.2:+12072114 | MS.gene041446:CDS |
ACCGCAACCTAATTGCAAAA+TGG | 0.383315 | 8.2:+12072249 | MS.gene041446:CDS |
GCAGAGTGCCCAAGGAGCTC+AGG | 0.388903 | 8.2:+12073614 | MS.gene041446:CDS |
CAATTAATTCCCAGCCTTCT+GGG | 0.404207 | 8.2:-12071923 | None:intergenic |
TATGAATTCTGTTTAGATCA+AGG | 0.408300 | 8.2:+12072218 | MS.gene041446:CDS |
GAGGTAAACTCCGTCACTTC+CGG | 0.412868 | 8.2:+12070624 | MS.gene041446:CDS |
CCTACACTTCGTGAACTTCA+AGG | 0.446024 | 8.2:+12071948 | MS.gene041446:CDS |
GGTGAATGAGTGTTGTTTGT+TGG | 0.459199 | 8.2:+12069977 | None:intergenic |
TGGGATTGGCAACTTGATCT+TGG | 0.465311 | 8.2:+12070027 | MS.gene041446:CDS |
AGGAAACAAGTCTAGTAAAT+GGG | 0.472961 | 8.2:+12070008 | MS.gene041446:CDS |
AGCCTTCTGGGTATTTAACT+CGG | 0.490950 | 8.2:-12071911 | None:intergenic |
GAGTTAAATACCCAGAAGGC+TGG | 0.492946 | 8.2:+12071913 | MS.gene041446:CDS |
CAAGGAGCTCAGGGAGGAGA+AGG | 0.494422 | 8.2:+12073624 | MS.gene041446:CDS |
TGGTCACTACCACCACTACT+AGG | 0.502573 | 8.2:+12070563 | MS.gene041446:CDS |
CCTTTGCTTATTGTCGTCTG+AGG | 0.507480 | 8.2:+12070672 | MS.gene041446:CDS |
GTGTGTTCATTGTGGTTGCA+AGG | 0.509966 | 8.2:+12073654 | MS.gene041446:CDS |
GTTGCAAGGGTTGTGCAAGT+GGG | 0.512248 | 8.2:+12073668 | MS.gene041446:CDS |
GGTTGCAAGGGTTGTGCAAG+TGG | 0.514571 | 8.2:+12073667 | MS.gene041446:CDS |
CAACATAGGCGTTCATAACC+AGG | 0.518122 | 8.2:-12073541 | None:intergenic |
CCTAATTGCAAAATGGAAGA+AGG | 0.526082 | 8.2:+12072256 | MS.gene041446:CDS |
TTATCGTATAAGTTACTCAC+TGG | 0.530571 | 8.2:+12070543 | MS.gene041446:intron |
ACAAGTCTAGTAAATGGGAT+TGG | 0.531126 | 8.2:+12070013 | MS.gene041446:CDS |
CGCACAACTGCCGGAAGTGA+CGG | 0.538937 | 8.2:-12070634 | None:intergenic |
CTTTGCTTATTGTCGTCTGA+GGG | 0.540274 | 8.2:+12070673 | MS.gene041446:CDS |
GTATGCACCTCAAGCAACAT+AGG | 0.540597 | 8.2:-12073555 | None:intergenic |
CCTTGAAGTTCACGAAGTGT+AGG | 0.544038 | 8.2:-12071948 | None:intergenic |
CAGAGTGCCCAAGGAGCTCA+GGG | 0.552081 | 8.2:+12073615 | MS.gene041446:CDS |
TGTGTTCATTGTGGTTGCAA+GGG | 0.552779 | 8.2:+12073655 | MS.gene041446:CDS |
GTGGTTGGTCGCACAACTGC+CGG | 0.555253 | 8.2:-12070643 | None:intergenic |
TTGCAAGGGTTGTGCAAGTG+GGG | 0.556074 | 8.2:+12073669 | MS.gene041446:CDS |
TGAACTCTACCATAAGAGAA+AGG | 0.559158 | 8.2:+12072178 | MS.gene041446:CDS |
AGTTAAATACCCAGAAGGCT+GGG | 0.561161 | 8.2:+12071914 | MS.gene041446:CDS |
AAGCAAAGGTGAGCGGTGGT+TGG | 0.563572 | 8.2:-12070658 | None:intergenic |
CTTCAAGGAAAGATGAGGGA+AGG | 0.566524 | 8.2:+12071963 | MS.gene041446:CDS |
TTGTGTATGCAGAGTGCCCA+AGG | 0.571684 | 8.2:+12073606 | MS.gene041446:CDS |
GTTATAGAGTGTGTTCATTG+TGG | 0.573951 | 8.2:+12073646 | MS.gene041446:CDS |
GTTGTTTGTTGGTATTTGCA+AGG | 0.577066 | 8.2:+12069988 | MS.gene041446:CDS |
ATTCTTCTTCTCGGTTGTCG+AGG | 0.580297 | 8.2:+12070605 | MS.gene041446:CDS |
GTGAACTTCAAGGAAAGATG+AGG | 0.592845 | 8.2:+12071958 | MS.gene041446:CDS |
CACTCTGCATACACAAGTGG+TGG | 0.609114 | 8.2:-12073599 | None:intergenic |
GCTGAGAATGACCCACATGA+TGG | 0.619377 | 8.2:+12072089 | MS.gene041446:intron |
TAGTATACTCCTAGTAGTGG+TGG | 0.627714 | 8.2:-12070572 | None:intergenic |
CAATAGTATACTCCTAGTAG+TGG | 0.633199 | 8.2:-12070575 | None:intergenic |
TGAACTTCAAGGAAAGATGA+GGG | 0.638807 | 8.2:+12071959 | MS.gene041446:CDS |
ATGAACGCCTATGTTGCTTG+AGG | 0.642564 | 8.2:+12073548 | MS.gene041446:CDS |
GGGCACTCTGCATACACAAG+TGG | 0.642607 | 8.2:-12073602 | None:intergenic |
AGCCGAGTTAAATACCCAGA+AGG | 0.645736 | 8.2:+12071909 | MS.gene041446:CDS |
CGACAATAAGCAAAGGTGAG+CGG | 0.662024 | 8.2:-12070665 | None:intergenic |
CAATAAGCAAAGGTGAGCGG+TGG | 0.673579 | 8.2:-12070662 | None:intergenic |
GTGGCGAAATTGTGATCGCG+TGG | 0.685360 | 8.2:-12073580 | None:intergenic |
CCTCAGACGACAATAAGCAA+AGG | 0.692457 | 8.2:-12070672 | None:intergenic |
AGTGCCCAAGGAGCTCAGGG+AGG | 0.692740 | 8.2:+12073618 | MS.gene041446:CDS |
GGTAGAGTTCAAATACATAG+CGG | 0.738599 | 8.2:-12072166 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGATATTAAAATTTCAAATA+TGG | - | chr8.2:12070384-12070403 | None:intergenic | 10.0% |
!!! | ATTTTATATATATTCCTATA+TGG | - | chr8.2:12073121-12073140 | None:intergenic | 10.0% |
!!! | TAAATAACTAATTTTGTAAA+TGG | + | chr8.2:12071227-12071246 | MS.gene041446:intron | 10.0% |
!!! | TTATTTTTTTAAAATGTGTT+TGG | - | chr8.2:12070278-12070297 | None:intergenic | 10.0% |
!! | AAATGAAAATATGACATATA+AGG | - | chr8.2:12071860-12071879 | None:intergenic | 15.0% |
!! | AATCATGATGTAAAATTTAA+GGG | - | chr8.2:12070242-12070261 | None:intergenic | 15.0% |
!! | ATTAAAATTTCAAATATGGA+TGG | - | chr8.2:12070380-12070399 | None:intergenic | 15.0% |
!! | ATTAACACATAAAAACAATT+AGG | - | chr8.2:12071198-12071217 | None:intergenic | 15.0% |
!! | TTAACACATAAAAACAATTA+GGG | - | chr8.2:12071197-12071216 | None:intergenic | 15.0% |
!! | TTCAAATTATTCAAGAAATT+TGG | - | chr8.2:12070880-12070899 | None:intergenic | 15.0% |
!!! | ATTTTTTATTGTGATTTCTT+TGG | + | chr8.2:12070186-12070205 | MS.gene041446:intron | 15.0% |
!!! | TAAAATAGTTTGTAAATTAG+AGG | - | chr8.2:12070356-12070375 | None:intergenic | 15.0% |
!!! | TAACATTTTTGTCATTTATA+CGG | - | chr8.2:12072686-12072705 | None:intergenic | 15.0% |
!!! | TTATTATTTCTAAGGAATAA+CGG | + | chr8.2:12070318-12070337 | MS.gene041446:intron | 15.0% |
!! | AAAACCATTAAAAAACCAAA+AGG | - | chr8.2:12072812-12072831 | None:intergenic | 20.0% |
!! | AAGCTTAATTAAAATCACTT+AGG | - | chr8.2:12070738-12070757 | None:intergenic | 20.0% |
!! | AATCAAATAAGAACGAAAAA+AGG | + | chr8.2:12070433-12070452 | MS.gene041446:intron | 20.0% |
!! | ATATTGTTATATCCTTTATG+TGG | + | chr8.2:12072064-12072083 | MS.gene041446:intron | 20.0% |
!! | ATCAAATAAGAACGAAAAAA+GGG | + | chr8.2:12070434-12070453 | MS.gene041446:intron | 20.0% |
!! | GAATCATGATGTAAAATTTA+AGG | - | chr8.2:12070243-12070262 | None:intergenic | 20.0% |
!! | GTATAAATGACAAAAATGTT+AGG | + | chr8.2:12072685-12072704 | MS.gene041446:intron | 20.0% |
!! | GTTATTCCTTAGAAATAATA+AGG | - | chr8.2:12070319-12070338 | None:intergenic | 20.0% |
!! | TAACATAAATGGAACTTTAA+AGG | - | chr8.2:12071812-12071831 | None:intergenic | 20.0% |
!! | TGATTTCTTTGGTAAAATTT+GGG | + | chr8.2:12070197-12070216 | MS.gene041446:intron | 20.0% |
!!! | AATGATCCTTATTATTTCTA+AGG | + | chr8.2:12070310-12070329 | MS.gene041446:intron | 20.0% |
!!! | CTGTTCTTCAATATTTTTTA+GGG | + | chr8.2:12070708-12070727 | MS.gene041446:intron | 20.0% |
! | AAACCCTTAGTTTATAATGT+TGG | - | chr8.2:12070974-12070993 | None:intergenic | 25.0% |
! | AAAGTAGATCAATTAACTGA+AGG | - | chr8.2:12073416-12073435 | None:intergenic | 25.0% |
! | AACAAGGTGATTAGAATTTA+AGG | - | chr8.2:12072527-12072546 | None:intergenic | 25.0% |
! | ACCGTTGAAAATGAAATATA+TGG | + | chr8.2:12073448-12073467 | MS.gene041446:intron | 25.0% |
! | ACTAAATCTACTCTTACAAT+TGG | + | chr8.2:12073242-12073261 | MS.gene041446:intron | 25.0% |
! | ACTGGTATTATTGGATAAAA+TGG | + | chr8.2:12071533-12071552 | MS.gene041446:intron | 25.0% |
! | ATGATATTCAAGAGAACAAA+AGG | - | chr8.2:12070057-12070076 | None:intergenic | 25.0% |
! | ATTCAAGAAATTTGGATACA+CGG | - | chr8.2:12070872-12070891 | None:intergenic | 25.0% |
! | ATTCTAGCAAGTAACATAAA+TGG | - | chr8.2:12071823-12071842 | None:intergenic | 25.0% |
! | CAAACAATTACTTTAGCAAA+GGG | - | chr8.2:12073155-12073174 | None:intergenic | 25.0% |
! | CCTAAAAAATATTGAAGAAC+AGG | - | chr8.2:12070710-12070729 | None:intergenic | 25.0% |
! | CTGGTATTATTGGATAAAAT+GGG | + | chr8.2:12071534-12071553 | MS.gene041446:intron | 25.0% |
! | GAAAGTAAATTTCATTTGAC+GGG | + | chr8.2:12072330-12072349 | MS.gene041446:intron | 25.0% |
! | GAATGAAAAAGAATACAGTA+AGG | - | chr8.2:12072020-12072039 | None:intergenic | 25.0% |
! | GGAAAGTAAATTTCATTTGA+CGG | + | chr8.2:12072329-12072348 | MS.gene041446:intron | 25.0% |
! | GTGATTTCTTTGGTAAAATT+TGG | + | chr8.2:12070196-12070215 | MS.gene041446:intron | 25.0% |
! | TAGAAATTTCCTTTCTCTTA+TGG | - | chr8.2:12072190-12072209 | None:intergenic | 25.0% |
! | TATGAATTCTGTTTAGATCA+AGG | + | chr8.2:12072218-12072237 | MS.gene041446:CDS | 25.0% |
! | TATTATTCATAAGCTTGTCA+AGG | - | chr8.2:12071122-12071141 | None:intergenic | 25.0% |
! | TATTCAATGAATGAACCAAA+TGG | + | chr8.2:12073026-12073045 | MS.gene041446:intron | 25.0% |
! | TCAAACAATTACTTTAGCAA+AGG | - | chr8.2:12073156-12073175 | None:intergenic | 25.0% |
! | TCATTCATTGAATATTCATC+TGG | - | chr8.2:12073020-12073039 | None:intergenic | 25.0% |
! | TCTATTCTACTTATGTTAAG+AGG | - | chr8.2:12071764-12071783 | None:intergenic | 25.0% |
! | TCTTACTCTTTGTAAGTTTA+GGG | + | chr8.2:12070463-12070482 | MS.gene041446:intron | 25.0% |
! | TCTTATCAATGGTATATACT+TGG | - | chr8.2:12071633-12071652 | None:intergenic | 25.0% |
! | TGGTATTATTGGATAAAATG+GGG | + | chr8.2:12071535-12071554 | MS.gene041446:intron | 25.0% |
! | TTGTTCTCTTGAATATCATT+TGG | + | chr8.2:12070058-12070077 | MS.gene041446:intron | 25.0% |
! | TTTAATAGTGAATGGTTGTT+TGG | + | chr8.2:12073075-12073094 | MS.gene041446:intron | 25.0% |
!! | ATTTTATGCACTAGATGATA+TGG | + | chr8.2:12070139-12070158 | MS.gene041446:intron | 25.0% |
!! | GCCATATATTTCATTTTCAA+CGG | - | chr8.2:12073452-12073471 | None:intergenic | 25.0% |
!! | GTTTAAAACGTAAAGAGAAA+AGG | - | chr8.2:12070773-12070792 | None:intergenic | 25.0% |
!! | TATAAACTAAGGGTTTGTTT+GGG | + | chr8.2:12070978-12070997 | MS.gene041446:intron | 25.0% |
!! | TCAACTTGTTTAATAGTGAA+TGG | + | chr8.2:12073067-12073086 | MS.gene041446:intron | 25.0% |
!! | TGGTGTGCAATTTTAAATAT+AGG | - | chr8.2:12072140-12072159 | None:intergenic | 25.0% |
!! | TTATAAACTAAGGGTTTGTT+TGG | + | chr8.2:12070977-12070996 | MS.gene041446:intron | 25.0% |
!! | TTCACTATTAAACAAGTTGA+AGG | - | chr8.2:12073067-12073086 | None:intergenic | 25.0% |
!! | TTTACGATGCTTATTTCTTA+AGG | + | chr8.2:12070822-12070841 | MS.gene041446:intron | 25.0% |
!! | TTTTATCCAATAATACCAGT+TGG | - | chr8.2:12071533-12071552 | None:intergenic | 25.0% |
!! | TTTTATGCACTAGATGATAT+GGG | + | chr8.2:12070140-12070159 | MS.gene041446:intron | 25.0% |
!!! | AGACAATATTTTTTTCCTAG+AGG | + | chr8.2:12073303-12073322 | MS.gene041446:intron | 25.0% |
!!! | CCTGTTCTTCAATATTTTTT+AGG | + | chr8.2:12070707-12070726 | MS.gene041446:intron | 25.0% |
AAAAATATTGAAGAACAGGC+AGG | - | chr8.2:12070706-12070725 | None:intergenic | 30.0% | |
AAAAATGTTAGGAGAAATGG+TGG | + | chr8.2:12072696-12072715 | MS.gene041446:intron | 30.0% | |
AAAATATTGAAGAACAGGCA+GGG | - | chr8.2:12070705-12070724 | None:intergenic | 30.0% | |
AAAGAAAATGTGAGACTTTG+TGG | + | chr8.2:12072114-12072133 | MS.gene041446:CDS | 30.0% | |
AAGGAAACAAGTCTAGTAAA+TGG | + | chr8.2:12070007-12070026 | MS.gene041446:CDS | 30.0% | |
AATGATCAAGTCCTTTACTT+TGG | - | chr8.2:12072783-12072802 | None:intergenic | 30.0% | |
AGAAATAAGTCAATCCAAAC+GGG | + | chr8.2:12071171-12071190 | MS.gene041446:intron | 30.0% | |
AGAAGTGAGAAATCTATATC+TGG | + | chr8.2:12072376-12072395 | MS.gene041446:intron | 30.0% | |
AGAATTTACAGTAAAACACC+TGG | + | chr8.2:12071566-12071585 | MS.gene041446:intron | 30.0% | |
AGGAAACAAGTCTAGTAAAT+GGG | + | chr8.2:12070008-12070027 | MS.gene041446:CDS | 30.0% | |
AGGGCACAAATTTAGATTTA+GGG | - | chr8.2:12070223-12070242 | None:intergenic | 30.0% | |
AGTTAGGTTAAGTTAGTTAG+TGG | - | chr8.2:12071711-12071730 | None:intergenic | 30.0% | |
ATAAGAACGAAAAAAGGGTT+TGG | + | chr8.2:12070439-12070458 | MS.gene041446:intron | 30.0% | |
ATTAACTGAAGGCAATGAAA+AGG | - | chr8.2:12073405-12073424 | None:intergenic | 30.0% | |
CAAGCTATGAAGTTGTTTAT+AGG | - | chr8.2:12071787-12071806 | None:intergenic | 30.0% | |
CAATTTATTCTTGCACTATG+AGG | - | chr8.2:12072642-12072661 | None:intergenic | 30.0% | |
CAGAAATAAGTCAATCCAAA+CGG | + | chr8.2:12071170-12071189 | MS.gene041446:intron | 30.0% | |
GAAGTGAGAAATCTATATCT+GGG | + | chr8.2:12072377-12072396 | MS.gene041446:intron | 30.0% | |
GACAAAAATGTTAGGAGAAA+TGG | + | chr8.2:12072693-12072712 | MS.gene041446:intron | 30.0% | |
GAGATAGAATAAGTATGATC+AGG | + | chr8.2:12072352-12072371 | MS.gene041446:intron | 30.0% | |
GTCTTACTCTTTGTAAGTTT+AGG | + | chr8.2:12070462-12070481 | MS.gene041446:intron | 30.0% | |
GTGCCAACATTATAAACTAA+GGG | + | chr8.2:12070968-12070987 | MS.gene041446:intron | 30.0% | |
TAAGAACGAAAAAAGGGTTT+GGG | + | chr8.2:12070440-12070459 | MS.gene041446:intron | 30.0% | |
TGTGCCAACATTATAAACTA+AGG | + | chr8.2:12070967-12070986 | MS.gene041446:intron | 30.0% | |
TTAGTTAAGAAGAGTTCACT+TGG | - | chr8.2:12071736-12071755 | None:intergenic | 30.0% | |
TTATCGTATAAGTTACTCAC+TGG | + | chr8.2:12070543-12070562 | MS.gene041446:intron | 30.0% | |
TTTAATTAAGCTTATGCTCG+TGG | + | chr8.2:12070745-12070764 | MS.gene041446:intron | 30.0% | |
TTTCTTATGATGTCATGTTG+TGG | + | chr8.2:12070918-12070937 | MS.gene041446:intron | 30.0% | |
! | AAGGGCACAAATTTAGATTT+AGG | - | chr8.2:12070224-12070243 | None:intergenic | 30.0% |
! | ATTTTCTTTTGCCATCATGT+GGG | - | chr8.2:12072103-12072122 | None:intergenic | 30.0% |
! | GAACAATTTATTTGAGACCT+TGG | - | chr8.2:12072874-12072893 | None:intergenic | 30.0% |
! | GGTTTTTGAATCATCAACAA+TGG | + | chr8.2:12070843-12070862 | MS.gene041446:intron | 30.0% |
! | TATGGTTTGTAGCAAAAACA+AGG | - | chr8.2:12072543-12072562 | None:intergenic | 30.0% |
! | TTGATCATTTAGTGACCTTT+TGG | + | chr8.2:12072794-12072813 | MS.gene041446:intron | 30.0% |
!! | TTTGGTGTATGTCTTAGTTT+TGG | + | chr8.2:12073093-12073112 | MS.gene041446:intron | 30.0% |
!!! | ACTTGATAGCTAGCTTTTAA+GGG | - | chr8.2:12071299-12071318 | None:intergenic | 30.0% |
!!! | GTGACCTTTTGGTTTTTTAA+TGG | + | chr8.2:12072805-12072824 | MS.gene041446:intron | 30.0% |
!!! | TCTTCTCGAGCAATTTTTTA+TGG | - | chr8.2:12072561-12072580 | None:intergenic | 30.0% |
!!! | TTTTTTTCCTAGAGGTTACA+AGG | + | chr8.2:12073311-12073330 | MS.gene041446:intron | 30.0% |
AAGAGTTCACTTGGTAAGTT+AGG | - | chr8.2:12071727-12071746 | None:intergenic | 35.0% | |
ACAAACAAAGATACCTTCAG+TGG | - | chr8.2:12070096-12070115 | None:intergenic | 35.0% | |
ACAAGTCTAGTAAATGGGAT+TGG | + | chr8.2:12070013-12070032 | MS.gene041446:CDS | 35.0% | |
ACATGTTGCCTATAGATAAG+AGG | - | chr8.2:12071675-12071694 | None:intergenic | 35.0% | |
AGAGTGAGCTATCTTATCAA+TGG | - | chr8.2:12071644-12071663 | None:intergenic | 35.0% | |
AGTGAACTACAATCAGCTTT+AGG | - | chr8.2:12072923-12072942 | None:intergenic | 35.0% | |
CAAACAAAGATACCTTCAGT+GGG | - | chr8.2:12070095-12070114 | None:intergenic | 35.0% | |
CAATAGTATACTCCTAGTAG+TGG | - | chr8.2:12070578-12070597 | None:intergenic | 35.0% | |
CATCGTAGTTGCTATCTATA+AGG | + | chr8.2:12073198-12073217 | MS.gene041446:intron | 35.0% | |
CATGTTGCCTATAGATAAGA+GGG | - | chr8.2:12071674-12071693 | None:intergenic | 35.0% | |
CCTAATTGCAAAATGGAAGA+AGG | + | chr8.2:12072256-12072275 | MS.gene041446:CDS | 35.0% | |
GAGACATATCCATATGCTTA+AGG | - | chr8.2:12072463-12072482 | None:intergenic | 35.0% | |
GAGTAAACTCTCCAAAGTAA+AGG | + | chr8.2:12072769-12072788 | MS.gene041446:intron | 35.0% | |
GCAGTAAACAACAGTGATAT+TGG | - | chr8.2:12073383-12073402 | None:intergenic | 35.0% | |
GGTAGAGTTCAAATACATAG+CGG | - | chr8.2:12072169-12072188 | None:intergenic | 35.0% | |
GTGAAGTAACCTTAAGCATA+TGG | + | chr8.2:12072451-12072470 | MS.gene041446:intron | 35.0% | |
GTTATAGAGTGTGTTCATTG+TGG | + | chr8.2:12073646-12073665 | MS.gene041446:CDS | 35.0% | |
TAAAGCTGATTGTAGTTCAC+TGG | + | chr8.2:12072922-12072941 | MS.gene041446:intron | 35.0% | |
TAAAGTTATGCGTGTGAGTA+AGG | + | chr8.2:12072846-12072865 | MS.gene041446:intron | 35.0% | |
TCGAAACCAACTGGTATTAT+TGG | + | chr8.2:12071524-12071543 | MS.gene041446:intron | 35.0% | |
TGAACTCTACCATAAGAGAA+AGG | + | chr8.2:12072178-12072197 | MS.gene041446:CDS | 35.0% | |
TGAACTTCAAGGAAAGATGA+GGG | + | chr8.2:12071959-12071978 | MS.gene041446:CDS | 35.0% | |
TGTCTTCTCATTCTTCTTCT+CGG | + | chr8.2:12070596-12070615 | MS.gene041446:CDS | 35.0% | |
! | CATTTTCTTTTGCCATCATG+TGG | - | chr8.2:12072104-12072123 | None:intergenic | 35.0% |
! | CCTTCTTCCATTTTGCAATT+AGG | - | chr8.2:12072259-12072278 | None:intergenic | 35.0% |
! | GTTGTTTGTTGGTATTTGCA+AGG | + | chr8.2:12069988-12070007 | MS.gene041446:CDS | 35.0% |
!! | TCCATTTTGCAATTAGGTTG+CGG | - | chr8.2:12072253-12072272 | None:intergenic | 35.0% |
!!! | GACTTGATAGCTAGCTTTTA+AGG | - | chr8.2:12071300-12071319 | None:intergenic | 35.0% |
!!! | TCTTAGTTTTGGCTCCATAT+AGG | + | chr8.2:12073104-12073123 | MS.gene041446:intron | 35.0% |
AAAAACAATTAGGGCCCGTT+TGG | - | chr8.2:12071188-12071207 | None:intergenic | 40.0% | |
AAATTCCACATCAGGCAGTA+TGG | - | chr8.2:12071347-12071366 | None:intergenic | 40.0% | |
AATTCCACATCAGGCAGTAT+GGG | - | chr8.2:12071346-12071365 | None:intergenic | 40.0% | |
ACCGCAACCTAATTGCAAAA+TGG | + | chr8.2:12072249-12072268 | MS.gene041446:CDS | 40.0% | |
AGCCTTCTGGGTATTTAACT+CGG | - | chr8.2:12071914-12071933 | None:intergenic | 40.0% | |
AGTAGGACTGCAAATGATAC+AGG | + | chr8.2:12072498-12072517 | MS.gene041446:intron | 40.0% | |
AGTTAAATACCCAGAAGGCT+GGG | + | chr8.2:12071914-12071933 | MS.gene041446:CDS | 40.0% | |
CAATTAATTCCCAGCCTTCT+GGG | - | chr8.2:12071926-12071945 | None:intergenic | 40.0% | |
CCTAAAAAGGTCATTTCGCA+GGG | + | chr8.2:12072607-12072626 | MS.gene041446:intron | 40.0% | |
CTTATGATGTCATGTTGTGG+TGG | + | chr8.2:12070921-12070940 | MS.gene041446:intron | 40.0% | |
CTTTGCTTATTGTCGTCTGA+GGG | + | chr8.2:12070673-12070692 | MS.gene041446:CDS | 40.0% | |
GATAAGATAGCTCACTCTCT+AGG | + | chr8.2:12071646-12071665 | MS.gene041446:intron | 40.0% | |
GCTCTCTGATCATCCTAAAA+AGG | + | chr8.2:12072594-12072613 | MS.gene041446:intron | 40.0% | |
GCTTAAGGTTACTTCACCTA+GGG | - | chr8.2:12072448-12072467 | None:intergenic | 40.0% | |
GTGAACTTCAAGGAAAGATG+AGG | + | chr8.2:12071958-12071977 | MS.gene041446:CDS | 40.0% | |
GTTACACTTTCCTACTCTTG+TGG | - | chr8.2:12072426-12072445 | None:intergenic | 40.0% | |
TAGAGTCTCTCTAATACTCC+AGG | - | chr8.2:12071587-12071606 | None:intergenic | 40.0% | |
TAGTATACTCCTAGTAGTGG+TGG | - | chr8.2:12070575-12070594 | None:intergenic | 40.0% | |
TCAATTAATTCCCAGCCTTC+TGG | - | chr8.2:12071927-12071946 | None:intergenic | 40.0% | |
TCCTAAAAAGGTCATTTCGC+AGG | + | chr8.2:12072606-12072625 | MS.gene041446:intron | 40.0% | |
TGCTTAAGGTTACTTCACCT+AGG | - | chr8.2:12072449-12072468 | None:intergenic | 40.0% | |
TGTGTTCATTGTGGTTGCAA+GGG | + | chr8.2:12073655-12073674 | MS.gene041446:CDS | 40.0% | |
TTACCAAGATTCACGCCATT+TGG | - | chr8.2:12073044-12073063 | None:intergenic | 40.0% | |
TTAGGAGAAATGGTGGTAGA+AGG | + | chr8.2:12072703-12072722 | MS.gene041446:intron | 40.0% | |
! | AACTAAGGGTTTGTTTGGGT+TGG | + | chr8.2:12070982-12071001 | MS.gene041446:intron | 40.0% |
! | CTGATTGTAGTTCACTGGTT+TGG | + | chr8.2:12072927-12072946 | MS.gene041446:intron | 40.0% |
! | GGTATATACTTGGAGCCTTT+TGG | - | chr8.2:12071623-12071642 | None:intergenic | 40.0% |
! | TTGTAAGTTTAGGGCGTGTT+TGG | + | chr8.2:12070472-12070491 | MS.gene041446:intron | 40.0% |
!! | ACTCGGCTTGTCTTTACTTT+TGG | - | chr8.2:12071897-12071916 | None:intergenic | 40.0% |
!! | TTTGTTTCTGAATTGCAGCC+TGG | + | chr8.2:12073523-12073542 | MS.gene041446:intron | 40.0% |
!!! | GATAGCTAGCTTTTAAGGGA+GGG | - | chr8.2:12071295-12071314 | None:intergenic | 40.0% |
!!! | TGATAGCTAGCTTTTAAGGG+AGG | - | chr8.2:12071296-12071315 | None:intergenic | 40.0% |
ACAACGACCTTGTAACCTCT+AGG | - | chr8.2:12073321-12073340 | None:intergenic | 45.0% | |
ACACTTTCCTACTCTTGTGG+TGG | - | chr8.2:12072423-12072442 | None:intergenic | 45.0% | |
AGCCGAGTTAAATACCCAGA+AGG | + | chr8.2:12071909-12071928 | MS.gene041446:CDS | 45.0% | |
AGTCCTACTGTGTATGTGGT+AGG | - | chr8.2:12072487-12072506 | None:intergenic | 45.0% | |
ATTCTTCTTCTCGGTTGTCG+AGG | + | chr8.2:12070605-12070624 | MS.gene041446:CDS | 45.0% | |
CAAAAGTCAGCTCTCATGGA+CGG | - | chr8.2:12071404-12071423 | None:intergenic | 45.0% | |
CAAATACATAGCGGCTCTTC+TGG | - | chr8.2:12072160-12072179 | None:intergenic | 45.0% | |
CAACATAGGCGTTCATAACC+AGG | - | chr8.2:12073544-12073563 | None:intergenic | 45.0% | |
CATTCTCAGCTGCCACATAA+AGG | - | chr8.2:12072079-12072098 | None:intergenic | 45.0% | |
CCCACAGACAGAATTCTAAG+GGG | + | chr8.2:12072994-12073013 | MS.gene041446:intron | 45.0% | |
CCCCTTAGAATTCTGTCTGT+GGG | - | chr8.2:12072997-12073016 | None:intergenic | 45.0% | |
CCTACACTTCGTGAACTTCA+AGG | + | chr8.2:12071948-12071967 | MS.gene041446:CDS | 45.0% | |
CCTACTCTTGTGGTGGTAAA+AGG | - | chr8.2:12072416-12072435 | None:intergenic | 45.0% | |
CCTCAGACGACAATAAGCAA+AGG | - | chr8.2:12070675-12070694 | None:intergenic | 45.0% | |
CCTTGAAGTTCACGAAGTGT+AGG | - | chr8.2:12071951-12071970 | None:intergenic | 45.0% | |
CCTTTGCTTATTGTCGTCTG+AGG | + | chr8.2:12070672-12070691 | MS.gene041446:CDS | 45.0% | |
CGACAATAAGCAAAGGTGAG+CGG | - | chr8.2:12070668-12070687 | None:intergenic | 45.0% | |
CTAGGCTCCCTCTTATCTAT+AGG | + | chr8.2:12071664-12071683 | MS.gene041446:intron | 45.0% | |
CTTCAAGGAAAGATGAGGGA+AGG | + | chr8.2:12071963-12071982 | MS.gene041446:CDS | 45.0% | |
GAACCAAATGGCGTGAATCT+TGG | + | chr8.2:12073038-12073057 | MS.gene041446:intron | 45.0% | |
GAGTAGTACAATCCCACTGA+AGG | + | chr8.2:12070080-12070099 | MS.gene041446:intron | 45.0% | |
GAGTTAAATACCCAGAAGGC+TGG | + | chr8.2:12071913-12071932 | MS.gene041446:CDS | 45.0% | |
GCCCACAGACAGAATTCTAA+GGG | + | chr8.2:12072993-12073012 | MS.gene041446:intron | 45.0% | |
GGATCTAGCTAACAAGCATC+AGG | - | chr8.2:12072665-12072684 | None:intergenic | 45.0% | |
GTATGCACCTCAAGCAACAT+AGG | - | chr8.2:12073558-12073577 | None:intergenic | 45.0% | |
GTGTGTTCATTGTGGTTGCA+AGG | + | chr8.2:12073654-12073673 | MS.gene041446:CDS | 45.0% | |
TAGACTCTCCCAATGCCAAA+AGG | + | chr8.2:12071605-12071624 | MS.gene041446:intron | 45.0% | |
TCCAGTTGATCGAAACCAAC+TGG | + | chr8.2:12071515-12071534 | MS.gene041446:intron | 45.0% | |
TCTCCTACCACATACACAGT+AGG | + | chr8.2:12072481-12072500 | MS.gene041446:intron | 45.0% | |
TGCCCACAGACAGAATTCTA+AGG | + | chr8.2:12072992-12073011 | MS.gene041446:intron | 45.0% | |
TGGTGGTAAAAGGCAAGTGT+TGG | - | chr8.2:12072406-12072425 | None:intergenic | 45.0% | |
TTCACTCTCAACGCTGTACT+TGG | + | chr8.2:12071432-12071451 | MS.gene041446:intron | 45.0% | |
TTCTGTCTGTGGGCAAATTG+TGG | - | chr8.2:12072987-12073006 | None:intergenic | 45.0% | |
TTGCAGTCCTACTGTGTATG+TGG | - | chr8.2:12072491-12072510 | None:intergenic | 45.0% | |
! | ACCAGTTGGTTTCGATCAAC+TGG | - | chr8.2:12071519-12071538 | None:intergenic | 45.0% |
! | ACTTGGAGCCTTTTGGCATT+GGG | - | chr8.2:12071616-12071635 | None:intergenic | 45.0% |
! | ATGAACGCCTATGTTGCTTG+AGG | + | chr8.2:12073548-12073567 | MS.gene041446:CDS | 45.0% |
! | CCCTGCGAAATGACCTTTTT+AGG | - | chr8.2:12072610-12072629 | None:intergenic | 45.0% |
! | CCTTTTACCACCACAAGAGT+AGG | + | chr8.2:12072413-12072432 | MS.gene041446:intron | 45.0% |
! | GAGTAGGAAAGTGTAACCCT+AGG | + | chr8.2:12072429-12072448 | MS.gene041446:intron | 45.0% |
! | GTTTAGGGCGTGTTTGGTTA+CGG | + | chr8.2:12070478-12070497 | MS.gene041446:intron | 45.0% |
! | TACTTGGAGCCTTTTGGCAT+TGG | - | chr8.2:12071617-12071636 | None:intergenic | 45.0% |
! | TGGGATTGGCAACTTGATCT+TGG | + | chr8.2:12070027-12070046 | MS.gene041446:CDS | 45.0% |
!! | AGGGAGGGTACTTATCAAGT+TGG | - | chr8.2:12071280-12071299 | None:intergenic | 45.0% |
!! | TCCATGAGAGCTGACTTTTG+CGG | + | chr8.2:12071404-12071423 | MS.gene041446:intron | 45.0% |
!!! | TTTATTTTGTTTTTTTTTAT+AGG | + | chr8.2:12072308-12072327 | MS.gene041446:intron | 5.0% |
AGGCAGTATGGGATGCTCAA+TGG | - | chr8.2:12071335-12071354 | None:intergenic | 50.0% | |
CAATAAGCAAAGGTGAGCGG+TGG | - | chr8.2:12070665-12070684 | None:intergenic | 50.0% | |
CACTCTGCATACACAAGTGG+TGG | - | chr8.2:12073602-12073621 | None:intergenic | 50.0% | |
CGATCAACTGGAATCAGAGC+TGG | - | chr8.2:12071507-12071526 | None:intergenic | 50.0% | |
CTGGAATCAGAGCTGGTTGT+TGG | - | chr8.2:12071500-12071519 | None:intergenic | 50.0% | |
GAATCAGAGCTGGTTGTTGG+TGG | - | chr8.2:12071497-12071516 | None:intergenic | 50.0% | |
GAGGTAAACTCCGTCACTTC+CGG | + | chr8.2:12070624-12070643 | MS.gene041446:CDS | 50.0% | |
GCCCCTTAGAATTCTGTCTG+TGG | - | chr8.2:12072998-12073017 | None:intergenic | 50.0% | |
GCTCGAGAAGATATTGCACC+TGG | + | chr8.2:12072570-12072589 | MS.gene041446:intron | 50.0% | |
GCTGAGAATGACCCACATGA+TGG | + | chr8.2:12072089-12072108 | MS.gene041446:intron | 50.0% | |
GTGCACGCAAATTCCACATC+AGG | - | chr8.2:12071355-12071374 | None:intergenic | 50.0% | |
GTTGCAAGGGTTGTGCAAGT+GGG | + | chr8.2:12073668-12073687 | MS.gene041446:CDS | 50.0% | |
TCCGCAAAAGTCAGCTCTCA+TGG | - | chr8.2:12071408-12071427 | None:intergenic | 50.0% | |
TGGTCACTACCACCACTACT+AGG | + | chr8.2:12070563-12070582 | MS.gene041446:CDS | 50.0% | |
TTGCAAGGGTTGTGCAAGTG+GGG | + | chr8.2:12073669-12073688 | MS.gene041446:CDS | 50.0% | |
! | AACGCTGTACTTGGCCTTTC+TGG | + | chr8.2:12071441-12071460 | MS.gene041446:intron | 50.0% |
! | TGCTCAATGGAGTGTCTGAG+TGG | - | chr8.2:12071322-12071341 | None:intergenic | 50.0% |
! | TTGTGTATGCAGAGTGCCCA+AGG | + | chr8.2:12073606-12073625 | MS.gene041446:CDS | 50.0% |
!! | TAGGATGATCAGAGAGCACC+AGG | - | chr8.2:12072591-12072610 | None:intergenic | 50.0% |
!! | TCATGGACGGTGCTACAGTA+GGG | - | chr8.2:12071391-12071410 | None:intergenic | 50.0% |
AAGCAAAGGTGAGCGGTGGT+TGG | - | chr8.2:12070661-12070680 | None:intergenic | 55.0% | |
GCATCCCATACTGCCTGATG+TGG | + | chr8.2:12071339-12071358 | MS.gene041446:intron | 55.0% | |
GGGCACTCTGCATACACAAG+TGG | - | chr8.2:12073605-12073624 | None:intergenic | 55.0% | |
GGTTGCAAGGGTTGTGCAAG+TGG | + | chr8.2:12073667-12073686 | MS.gene041446:CDS | 55.0% | |
GTGGCGAAATTGTGATCGCG+TGG | - | chr8.2:12073583-12073602 | None:intergenic | 55.0% | |
TACGGAGGAGCTGACCAGAA+AGG | - | chr8.2:12071458-12071477 | None:intergenic | 55.0% | |
TGCGTGTGAGTAAGGAGCCA+AGG | + | chr8.2:12072854-12072873 | MS.gene041446:intron | 55.0% | |
TTCTCCTCCCTGAGCTCCTT+GGG | - | chr8.2:12073625-12073644 | None:intergenic | 55.0% | |
! | TTTCTGGTCAGCTCCTCCGT+AGG | + | chr8.2:12071457-12071476 | MS.gene041446:intron | 55.0% |
!! | ACGGTGCTACAGTAGGGGTT+TGG | - | chr8.2:12071385-12071404 | None:intergenic | 55.0% |
!! | AGAGCTGGTTGTTGGTGGCT+CGG | - | chr8.2:12071492-12071511 | None:intergenic | 55.0% |
!! | CATGGACGGTGCTACAGTAG+GGG | - | chr8.2:12071390-12071409 | None:intergenic | 55.0% |
!! | CGGTGCTACAGTAGGGGTTT+GGG | - | chr8.2:12071384-12071403 | None:intergenic | 55.0% |
!! | CTCATGGACGGTGCTACAGT+AGG | - | chr8.2:12071392-12071411 | None:intergenic | 55.0% |
!! | GGTTGTTGGTGGCTCGGAAA+GGG | - | chr8.2:12071486-12071505 | None:intergenic | 55.0% |
!! | TGGTTGTTGGTGGCTCGGAA+AGG | - | chr8.2:12071487-12071506 | None:intergenic | 55.0% |
CAAGGAGCTCAGGGAGGAGA+AGG | + | chr8.2:12073624-12073643 | MS.gene041446:CDS | 60.0% | |
CGCACAACTGCCGGAAGTGA+CGG | - | chr8.2:12070637-12070656 | None:intergenic | 60.0% | |
CTTCTCCTCCCTGAGCTCCT+TGG | - | chr8.2:12073626-12073645 | None:intergenic | 60.0% | |
GGCTCGGAAAGGGCTACCTA+CGG | - | chr8.2:12071476-12071495 | None:intergenic | 60.0% | |
TCGGAAAGGGCTACCTACGG+AGG | - | chr8.2:12071473-12071492 | None:intergenic | 60.0% | |
! | CAGAGTGCCCAAGGAGCTCA+GGG | + | chr8.2:12073615-12073634 | MS.gene041446:CDS | 60.0% |
! | GTGGTTGGTCGCACAACTGC+CGG | - | chr8.2:12070646-12070665 | None:intergenic | 60.0% |
AGTGCCCAAGGAGCTCAGGG+AGG | + | chr8.2:12073618-12073637 | MS.gene041446:CDS | 65.0% | |
! | GCAGAGTGCCCAAGGAGCTC+AGG | + | chr8.2:12073614-12073633 | MS.gene041446:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 12069982 | 12073696 | 12069982 | ID=MS.gene041446 |
chr8.2 | mRNA | 12069982 | 12073696 | 12069982 | ID=MS.gene041446.t1;Parent=MS.gene041446 |
chr8.2 | exon | 12069982 | 12070048 | 12069982 | ID=MS.gene041446.t1.exon1;Parent=MS.gene041446.t1 |
chr8.2 | CDS | 12069982 | 12070048 | 12069982 | ID=cds.MS.gene041446.t1;Parent=MS.gene041446.t1 |
chr8.2 | exon | 12070555 | 12070694 | 12070555 | ID=MS.gene041446.t1.exon2;Parent=MS.gene041446.t1 |
chr8.2 | CDS | 12070555 | 12070694 | 12070555 | ID=cds.MS.gene041446.t1;Parent=MS.gene041446.t1 |
chr8.2 | exon | 12071885 | 12071984 | 12071885 | ID=MS.gene041446.t1.exon3;Parent=MS.gene041446.t1 |
chr8.2 | CDS | 12071885 | 12071984 | 12071885 | ID=cds.MS.gene041446.t1;Parent=MS.gene041446.t1 |
chr8.2 | exon | 12072090 | 12072277 | 12072090 | ID=MS.gene041446.t1.exon4;Parent=MS.gene041446.t1 |
chr8.2 | CDS | 12072090 | 12072277 | 12072090 | ID=cds.MS.gene041446.t1;Parent=MS.gene041446.t1 |
chr8.2 | exon | 12073541 | 12073696 | 12073541 | ID=MS.gene041446.t1.exon5;Parent=MS.gene041446.t1 |
chr8.2 | CDS | 12073541 | 12073696 | 12073541 | ID=cds.MS.gene041446.t1;Parent=MS.gene041446.t1 |
Gene Sequence |
Protein sequence |