AlfalfaGEDB | MS.gene041925

M. sativa cultivar XinJiangDaYe / MS.gene041925

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041925.t1	RHN62997.1	84.3	861	120	6	1	853	552	1405	0.00E+00	1403.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041925.t1	O22187	45.9	848	387	24	32	853	33	834	8.7e-183	642.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041925.t1	A0A396IJA5	84.3	861	120	6	1	853	552	1405	0.0e+00	1403.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene030390	MS.gene041925	PPI
MS.gene048810	MS.gene041925	PPI
MS.gene72138	MS.gene041925	PPI

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene041925.t1	MTR_4g095012	79.882	850	135	10	8	853	2	819	1291
MS.gene041925.t1	MTR_4g095032	75.534	842	135	7	9	850	3	773	1238
MS.gene041925.t1	MTR_4g095042	76.505	847	179	12	8	850	2	832	1222
MS.gene041925.t1	MTR_4g095018	81.324	589	102	5	1	588	1	582	899
MS.gene041925.t1	MTR_4g095045	69.688	673	171	10	181	851	1	642	895
MS.gene041925.t1	MTR_4g095022	79.365	504	99	3	9	510	3	503	776
MS.gene041925.t1	MTR_6g048090	48.586	778	342	19	36	785	27	774	640
MS.gene041925.t1	MTR_4g061833	43.684	847	410	19	36	853	32	840	627
MS.gene041925.t1	MTR_4g061930	43.684	847	410	19	36	853	32	840	627
MS.gene041925.t1	MTR_1g100110	43.489	837	390	19	36	853	42	814	608

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041925.t1	AT2G23200	46.209	844	390	22	32	853	33	834	0.0	660
MS.gene041925.t1	AT5G24010	46.926	797	378	20	15	796	11	777	0.0	632
MS.gene041925.t1	AT5G54380	42.400	875	436	19	11	847	5	849	0.0	613
MS.gene041925.t1	AT3G46290	44.090	846	411	21	31	853	24	830	0.0	607
MS.gene041925.t1	AT5G59700	44.763	802	389	18	15	799	8	772	0.0	590
MS.gene041925.t1	AT5G61350	43.457	810	392	21	36	799	32	821	0.0	587
MS.gene041925.t1	AT4G39110	44.110	798	393	19	31	803	51	820	0.0	587
MS.gene041925.t1	AT2G21480	44.602	778	392	19	28	787	47	803	0.0	585
MS.gene041925.t1	AT1G30570	38.882	841	461	15	31	836	26	848	0.0	547
MS.gene041925.t1	AT2G39360	40.779	770	403	16	36	785	29	765	9.36e-178	533

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 178 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTGAGCCAGGGTC+AGG	0.467152	8.4:+25674059	MS.gene041925:CDS
AAATCTGATGTGTATTCATT+CGG	0.474484	8.4:+25674521	MS.gene041925:CDS
AAATTCACCGTTTCAGTTCC+TGG	0.311168	8.4:+25672835	MS.gene041925:CDS
AACAGGTGAACTTGGCTGAG+TGG	0.596591	8.4:+25674603	MS.gene041925:CDS
AACCATTCGGAATTCTCAAC+AGG	0.448786	8.4:-25673816	None:intergenic
AACGCGAAAGATGATGTTTG+AGG	0.519139	8.4:-25672964	None:intergenic
AACGCTAAGAATGGTTCCTT+TGG	0.421119	8.4:+25673222	MS.gene041925:CDS
AACTTGTTTGAGGGTAAGTG+AGG	0.583505	8.4:-25672636	None:intergenic
AAGAGGATAATTGGAAAGGG+TGG	0.581428	8.4:+25673984	MS.gene041925:CDS
AAGATGCCGATGACGAATCT+TGG	0.406842	8.4:-25674123	None:intergenic

Showing 1 to 10 of 178 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAAATTCTTGCGGTT+TGG	-	chr8.4:25672717-25672736	None:intergenic	30.0%
ACACTTAGAGAAAGTTTGTA+CGG	+	chr8.4:25674215-25674234	MS.gene041925:CDS	30.0%
ACTGCAAATGATACATATGA+AGG	+	chr8.4:25673261-25673280	MS.gene041925:CDS	30.0%
CGTTGAAATTATGTAACAGA+AGG	-	chr8.4:25672864-25672883	None:intergenic	30.0%
CTAAACTTTCTAAGTGAGTT+TGG	-	chr8.4:25674698-25674717	None:intergenic	30.0%
CTTTACCTAACATAAACCTT+GGG	+	chr8.4:25673910-25673929	MS.gene041925:CDS	30.0%
GAAAAATGCTTACAAGATGA+TGG	+	chr8.4:25674728-25674747	MS.gene041925:CDS	30.0%
GAATTGGGTATTAAATGAAC+AGG	-	chr8.4:25673018-25673037	None:intergenic	30.0%
GATACTTGTTTATGAGTACA+TGG	+	chr8.4:25674184-25674203	MS.gene041925:CDS	30.0%
GTGAAGAGAATGAAAAGAAA+TGG	-	chr8.4:25672795-25672814	None:intergenic	30.0%

Showing 1 to 10 of 208 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	25672457	25675018	25672457	ID=MS.gene041925
chr8.4	mRNA	25672457	25675018	25672457	ID=MS.gene041925.t1;Parent=MS.gene041925
chr8.4	exon	25672457	25675018	25672457	ID=MS.gene041925.t1.exon1;Parent=MS.gene041925.t1
chr8.4	CDS	25672457	25675018	25672457	ID=cds.MS.gene041925.t1;Parent=MS.gene041925.t1

Gene Sequence

>MS.gene041925

ATGTCAACCTTTCACTTCCACACAATTCAACGCTCTATCTTTCTACTTGCTTTTTTTCTTCAATTCTCATCATTACAATTCCCCTCACTCGGATACGATCATCAAGACACATACTTCATCAATTGCGGATCAGATATCACTGTTACTGAAAGTAACAACGTTTATATCGGTGAATCAAACCTCACTTACCCTCAAACAAGTTTCAGCAACAGCAACATAGAAACCAATCAATCATCATCAGTGCCTTCACCTCTCTACCAAACCGCAAGAATTTTTCATTTCGAATCTTCCTACGAATTCAAAACCGTACCAAACAACACTTACATGGTACGTTTCCATTTCTTTTCATTCTCTTCACCAACTAATCTTTCCTCTGCAAAATTCACCGTTTCAGTTCCTGGTTTCCTTCTGTTACATAATTTCAACGCTGAAAACACCACCAACTCTCCTTTAGTAAAAGAGTATTACGTTAAAATCATTCGAAAAAGATTCAAAATCTCTTTCATTCCTCAAACATCATCTTTCGCGTTTGTTAATGCAATAGAACTCTTTATGCTCCCTGTTCATTTAATACCCAATTCAATCGCTCGTTTCAATTATATAGATGCTGCCGGTAGAAACTTATCTACTTATAGTAATGATTTCCTCTCTCAATCGTTGGAAACCAACCTCCGTCTTAATGTTGGTAGCGGAACTGTCGATAGAAAAACCGATACTTTATCGAGAGAATGGTTACCAGATGACAGTTATATAACTAATCCACAGAACGCTAAGAATGGTTCCTTTGGAGGTGAAATTAAACGCACTGCAAATGATACATATGAAGGTCCAAATTCAAATATATATATTGCTCCAGACGCGGTTTATGAAACTGCCAAAGAGAGCAAAAACGGATCTAAAGGTTTAAACATAAGTTGGAATTTTCCTGTTGAGAAGAATATTGATCATTTCCTTAGGCTTCATTTCTGTGACATTTTTAATGATAGACAAAATGGTCTTACATCTTTCTTTCTCTTCATTTATGACCAACTTGTTATGCATATAAATGATGACGTGTTATTGTCATCCGTGTTGTATGATCCTTATTATTATGACTTTGTGATTCGTTCCGATGGCTCAGGTATATTGAAGGTTAGCGTTGTACCTAATACGTCGATTGAGGTTTCTAGACCGAATGCGTTTTTAAACGGGCTAGAACTAATGACAGTGATTAAATCGTCCGGTCCAATTCCCCCTGATGATTTGGATTCGAGGAAGATTAGTCTTCCTGTGGTGGTGGGTTCAGTCGTTGGAGGTTTAGTTCTGGTTTCTGTTGTTGTGGTTTTGTTTCTTTGGATTAGTAAAATCAGGAAACAAAGGCCTGTTGAGAATTCCGAATGGTTGCCAATTCCAGCTGCAAGAGGAGGGAGTTCTCACAGCAGATTAACTGATCCAACAACAATTCAAGGCTCACCTTTACCTAACATAAACCTTGGGTTGAAAATCCCCTTGCTTGATCTTCAATTCGCAACTGATAATTTCGATGCGAAGAGGATAATTGGAAAGGGTGGTTTTGGAATTGTTTATAAGGGAGTTCTCAGGAATGGAATTAGTGTTGCAGTGAAAAGAAGTGAGCCAGGGTCAGGTCAAGGGCTACCTGAATTTCAGACTGAGATAATGGTTTTGTCCAAGATTCGTCATCGGCATCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAGATGATACTTGTTTATGAGTACATGGAAAAAGGGACACTTAGAGAAAGTTTGTACGGTGCAAATTTGCCTAGTTTCTTGACTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGCGATGTGAAGTCCACAAACATATTGCTCGATGAGCATCTTGTAGCTAAAGTTGCTGATTTTGGTCTCTCAAGAACTGGTCCTCTTGATCAGCATTCTTATGTCAGCACAGGTGTTAAGGGAACTTTCGGTTATCTCGATCCTGAGTACTTTAGATCACAACAGCTTACAGAAAAATCTGATGTGTATTCATTCGGTGTGGTTCTACTTGAAGTATTATGTGCAAGACCAGCCATTGAACCGTCGCTTCCAAGGGAACAGGTGAACTTGGCTGAGTGGGGAATTTTTTGCAAAGACAAAGGGATACTTGAAGATATCATTGATCCTTCCATCAAGGGACAAATCGATCCAAACTCACTTAGAAAGTTTAGTGAGACCGTGGAAAAATGCTTACAAGATGATGGTTGTGACAGGCCTTCAATGGGCGATGTTTTGTGGGACTTGGAATATTCTTTGCAGCTTCAGAGAGGTGCAATACATAGAGAACCACATGAAGACAGTTCCAGCAGTGCTTCTGTATCAATTCAATTGCCCAATGTTCGCCGTTTGCCTTCTCTGTCTACACTGAGTGAAGGGGATGACACGTCTATGTCTATTGGGAGGGTTATTGATGAATCTGATAGTGCAGCAGATTCTGTTTTCTCTCAGTTGAAACTTGATGATGCTAGATAG

Protein sequence

>MS.gene041925.t1

MSTFHFHTIQRSIFLLAFFLQFSSLQFPSLGYDHQDTYFINCGSDITVTESNNVYIGESNLTYPQTSFSNSNIETNQSSSVPSPLYQTARIFHFESSYEFKTVPNNTYMVRFHFFSFSSPTNLSSAKFTVSVPGFLLLHNFNAENTTNSPLVKEYYVKIIRKRFKISFIPQTSSFAFVNAIELFMLPVHLIPNSIARFNYIDAAGRNLSTYSNDFLSQSLETNLRLNVGSGTVDRKTDTLSREWLPDDSYITNPQNAKNGSFGGEIKRTANDTYEGPNSNIYIAPDAVYETAKESKNGSKGLNISWNFPVEKNIDHFLRLHFCDIFNDRQNGLTSFFLFIYDQLVMHINDDVLLSSVLYDPYYYDFVIRSDGSGILKVSVVPNTSIEVSRPNAFLNGLELMTVIKSSGPIPPDDLDSRKISLPVVVGSVVGGLVLVSVVVVLFLWISKIRKQRPVENSEWLPIPAARGGSSHSRLTDPTTIQGSPLPNINLGLKIPLLDLQFATDNFDAKRIIGKGGFGIVYKGVLRNGISVAVKRSEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERYEMILVYEYMEKGTLRESLYGANLPSFLTWKQRLEICIGAARGLHYLHKGAAGGIIHRDVKSTNILLDEHLVAKVADFGLSRTGPLDQHSYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPAIEPSLPREQVNLAEWGIFCKDKGILEDIIDPSIKGQIDPNSLRKFSETVEKCLQDDGCDRPSMGDVLWDLEYSLQLQRGAIHREPHEDSSSSASVSIQLPNVRRLPSLSTLSEGDDTSMSIGRVIDESDSAADSVFSQLKLDDAR