Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041933.t1 | KEH31492.1 | 96.9 | 826 | 18 | 2 | 1 | 826 | 1 | 818 | 0.00E+00 | 1477.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041933.t1 | Q9M3H5 | 74.7 | 723 | 178 | 2 | 103 | 825 | 102 | 819 | 8.2e-313 | 1074.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041933.t1 | A0A072UP92 | 96.9 | 826 | 18 | 2 | 1 | 826 | 1 | 818 | 0.0e+00 | 1477.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene041933 | MS.gene064361 | PPI |
MS.gene041933 | MS.gene36217 | PPI |
MS.gene041933 | MS.gene035831 | PPI |
MS.gene041933 | MS.gene89039 | PPI |
MS.gene041933 | MS.gene060874 | PPI |
MS.gene043599 | MS.gene041933 | PPI |
MS.gene041933 | MS.gene064391 | PPI |
MS.gene041933 | MS.gene36218 | PPI |
MS.gene041933 | MS.gene86378 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041933.t1 | MTR_4g094985 | 96.852 | 826 | 18 | 3 | 1 | 826 | 1 | 818 | 0.0 | 1627 |
MS.gene041933.t1 | MTR_2g036380 | 28.257 | 637 | 389 | 14 | 160 | 788 | 27 | 603 | 1.91e-63 | 227 |
MS.gene041933.t1 | MTR_2g036380 | 28.257 | 637 | 389 | 14 | 160 | 788 | 117 | 693 | 7.08e-63 | 227 |
MS.gene041933.t1 | MTR_2g036380 | 28.647 | 569 | 346 | 12 | 226 | 788 | 27 | 541 | 2.71e-57 | 209 |
MS.gene041933.t1 | MTR_2g036380 | 28.957 | 556 | 335 | 12 | 239 | 788 | 9 | 510 | 7.36e-57 | 207 |
MS.gene041933.t1 | MTR_4g127580 | 26.357 | 645 | 397 | 12 | 159 | 783 | 109 | 695 | 3.67e-56 | 209 |
MS.gene041933.t1 | MTR_4g094232 | 29.524 | 525 | 330 | 13 | 262 | 777 | 390 | 883 | 7.93e-54 | 202 |
MS.gene041933.t1 | MTR_5g010420 | 29.374 | 623 | 376 | 21 | 170 | 766 | 362 | 946 | 7.11e-47 | 181 |
MS.gene041933.t1 | MTR_8g079250 | 27.885 | 624 | 385 | 19 | 171 | 766 | 369 | 955 | 2.01e-44 | 173 |
MS.gene041933.t1 | MTR_3g105190 | 29.119 | 522 | 322 | 11 | 262 | 762 | 354 | 848 | 1.97e-42 | 167 |
MS.gene041933.t1 | MTR_8g012390 | 28.519 | 547 | 310 | 16 | 245 | 762 | 420 | 914 | 1.22e-41 | 165 |
MS.gene041933.t1 | MTR_2g035840 | 25.279 | 716 | 419 | 19 | 120 | 766 | 287 | 955 | 2.35e-39 | 157 |
MS.gene041933.t1 | MTR_4g094695 | 25.278 | 720 | 419 | 21 | 120 | 766 | 283 | 956 | 1.05e-38 | 155 |
MS.gene041933.t1 | MTR_8g079250 | 26.386 | 523 | 329 | 16 | 171 | 672 | 369 | 856 | 2.30e-30 | 129 |
MS.gene041933.t1 | MTR_3g105190 | 27.896 | 423 | 260 | 8 | 262 | 664 | 354 | 751 | 3.34e-30 | 128 |
MS.gene041933.t1 | MTR_8g012390 | 26.477 | 457 | 258 | 13 | 245 | 672 | 420 | 827 | 6.42e-28 | 121 |
MS.gene041933.t1 | MTR_8g079250 | 29.642 | 307 | 195 | 8 | 171 | 462 | 369 | 669 | 3.11e-24 | 109 |
MS.gene041933.t1 | MTR_7g100110 | 27.053 | 207 | 109 | 7 | 604 | 769 | 638 | 843 | 5.00e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041933.t1 | AT4G37270 | 76.170 | 705 | 167 | 1 | 103 | 807 | 102 | 805 | 0.0 | 1095 |
MS.gene041933.t1 | AT4G30110 | 25.077 | 646 | 425 | 14 | 149 | 788 | 104 | 696 | 1.27e-52 | 198 |
MS.gene041933.t1 | AT4G30110 | 25.077 | 646 | 425 | 14 | 149 | 788 | 104 | 696 | 1.27e-52 | 198 |
MS.gene041933.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 208 | 762 | 286 | 840 | 1.32e-51 | 195 |
MS.gene041933.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 208 | 762 | 286 | 840 | 1.32e-51 | 195 |
MS.gene041933.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 183 | 788 | 147 | 705 | 3.14e-51 | 195 |
MS.gene041933.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 183 | 788 | 147 | 705 | 3.14e-51 | 195 |
MS.gene041933.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 183 | 788 | 147 | 705 | 3.14e-51 | 195 |
MS.gene041933.t1 | AT5G21930 | 30.474 | 548 | 322 | 15 | 208 | 725 | 286 | 804 | 1.02e-48 | 186 |
MS.gene041933.t1 | AT4G33520 | 28.916 | 581 | 361 | 18 | 208 | 777 | 353 | 892 | 1.09e-47 | 183 |
MS.gene041933.t1 | AT4G33520 | 29.094 | 574 | 361 | 18 | 208 | 769 | 353 | 892 | 1.55e-47 | 183 |
MS.gene041933.t1 | AT5G44790 | 25.994 | 704 | 422 | 20 | 120 | 764 | 293 | 956 | 1.30e-44 | 174 |
MS.gene041933.t1 | AT1G63440 | 28.185 | 628 | 378 | 19 | 170 | 766 | 369 | 954 | 6.73e-44 | 172 |
MS.gene041933.t1 | AT5G21930 | 28.718 | 585 | 334 | 18 | 208 | 762 | 286 | 817 | 2.25e-41 | 164 |
MS.gene041933.t1 | AT4G30120 | 26.410 | 390 | 236 | 10 | 164 | 545 | 129 | 475 | 1.08e-31 | 131 |
MS.gene041933.t1 | AT4G30120 | 26.836 | 354 | 213 | 9 | 200 | 545 | 1 | 316 | 4.51e-30 | 123 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGAGGTTTGATAGAAAT+TGG | 0.118156 | 8.4:-25743621 | None:intergenic |
GGCTTCCCTTCCGTCAGTTT+TGG | 0.178850 | 8.4:+25752100 | MS.gene041933:CDS |
TCAATTGCTATTGCTGTTCT+TGG | 0.210359 | 8.4:+25746482 | MS.gene041933:CDS |
TATGATTATGATTATGAGTA+TGG | 0.221106 | 8.4:-25743716 | None:intergenic |
GGCATTGTCTAGCATATTCT+TGG | 0.228426 | 8.4:+25752079 | MS.gene041933:CDS |
AGTGAGCATCCATGTGTTAA+TGG | 0.260560 | 8.4:+25744210 | MS.gene041933:CDS |
TGCCCTTATAATTAATAAAA+AGG | 0.279604 | 8.4:+25749460 | MS.gene041933:CDS |
CAAAGGTGGCTGGATGAATT+TGG | 0.281364 | 8.4:+25746428 | MS.gene041933:CDS |
TCCAGCCACCTTTGAAGTTT+AGG | 0.293991 | 8.4:-25746419 | None:intergenic |
CGACCAGAATGAACGAGTTT+TGG | 0.294272 | 8.4:-25743974 | None:intergenic |
GCTATTAATGCATCTTCTTA+TGG | 0.295250 | 8.4:+25749419 | MS.gene041933:CDS |
GGATTTGATTCTTGTGGTTT+TGG | 0.298046 | 8.4:-25743568 | None:intergenic |
ACCATTGCATTTGATAAAAC+AGG | 0.313148 | 8.4:+25748349 | MS.gene041933:CDS |
GTCAATCCATTTGGTAGCTT+TGG | 0.315025 | 8.4:-25743841 | None:intergenic |
GCAACTTATCTTCAGGCTTC+AGG | 0.315496 | 8.4:-25750582 | None:intergenic |
TATTTGAAATCAAATGTATT+AGG | 0.327072 | 8.4:-25745062 | None:intergenic |
TCAAGAACAAGTGCAAATTC+TGG | 0.329012 | 8.4:-25745020 | None:intergenic |
ATGTTTAATCTTGCACATAT+TGG | 0.331244 | 8.4:+25744295 | MS.gene041933:CDS |
TGGTCGCATTTCCGTTGGTT+GGG | 0.332817 | 8.4:+25743991 | MS.gene041933:CDS |
ACTCAAAGGTGGACATGTTC+TGG | 0.334899 | 8.4:+25748306 | MS.gene041933:CDS |
AGAGAGGTTTGATAGAAATT+GGG | 0.342658 | 8.4:-25743620 | None:intergenic |
AAGGCAATTGAGCCTGTTTA+CGG | 0.342799 | 8.4:+25748400 | MS.gene041933:CDS |
AAAGGATATCTCAAGAGATA+TGG | 0.345113 | 8.4:+25750612 | MS.gene041933:CDS |
TGTCCAAAACTCGTTCATTC+TGG | 0.352789 | 8.4:+25743971 | MS.gene041933:CDS |
GGTTCTATCTACAGAGCCTT+AGG | 0.363004 | 8.4:+25747234 | MS.gene041933:CDS |
GACAGGTTTGATGAGTGATT+TGG | 0.363726 | 8.4:-25743952 | None:intergenic |
AAAGTTGGAGATAGAGTTCC+TGG | 0.368979 | 8.4:+25745535 | MS.gene041933:CDS |
CACTTGCTGCTGCAACTGTT+GGG | 0.374065 | 8.4:+25751796 | MS.gene041933:CDS |
CTGTAATATATCATGCTTCC+AGG | 0.374765 | 8.4:-25752640 | None:intergenic |
TGAAGTTGTCTGCCGAGATT+TGG | 0.379930 | 8.4:-25751913 | None:intergenic |
CATGATATATTACAGTTGAT+TGG | 0.380717 | 8.4:+25752648 | MS.gene041933:CDS |
TGCCTTGGCTGTGGCTCCAT+TGG | 0.384104 | 8.4:+25747281 | MS.gene041933:CDS |
AATCTAGACTCTCCTCTCTT+AGG | 0.385080 | 8.4:+25752679 | MS.gene041933:CDS |
TATGATTATGAGTATGGTTA+TGG | 0.386196 | 8.4:-25743710 | None:intergenic |
ATGATGGAGAATGAGGAATT+TGG | 0.390636 | 8.4:-25743649 | None:intergenic |
CTGGTCGCATTTCCGTTGGT+TGG | 0.392485 | 8.4:+25743990 | MS.gene041933:CDS |
AGTGAGTGGAATTTGGTAGA+AGG | 0.406840 | 8.4:-25743534 | None:intergenic |
ACATGACGCAACTTATCTTC+AGG | 0.418228 | 8.4:-25750589 | None:intergenic |
ATTCGCTAGGTCAATCCATT+TGG | 0.420166 | 8.4:-25743850 | None:intergenic |
GCACTTGCTGCTGCAACTGT+TGG | 0.421771 | 8.4:+25751795 | MS.gene041933:CDS |
TCTCTTAGGACAAATATAAC+AGG | 0.423503 | 8.4:+25752693 | MS.gene041933:CDS |
ATTACCATTGAGCACTTGAC+AGG | 0.431899 | 8.4:+25745490 | MS.gene041933:CDS |
ACAGGTTTGATGAGTGATTT+GGG | 0.433483 | 8.4:-25743951 | None:intergenic |
TGTTGCGGCAGCCATGGAAA+AGG | 0.442091 | 8.4:+25748495 | MS.gene041933:CDS |
CTAATGCGATGACCGTAAAC+AGG | 0.447398 | 8.4:-25748412 | None:intergenic |
ACAGTTGCAGCAGCAAGTGC+TGG | 0.448739 | 8.4:-25751792 | None:intergenic |
GTGAGTGGAATTTGGTAGAA+GGG | 0.450947 | 8.4:-25743533 | None:intergenic |
TTGGTCCACTTGTATTTAAG+TGG | 0.454297 | 8.4:+25746501 | MS.gene041933:CDS |
TTTGAGTACTTTCCTGGTAG+AGG | 0.454663 | 8.4:+25748933 | MS.gene041933:CDS |
TACTGGTGGACTTGTATTCA+AGG | 0.458170 | 8.4:+25748381 | MS.gene041933:CDS |
ACCCAAGTGATGCTTTCAAT+AGG | 0.465409 | 8.4:-25749337 | None:intergenic |
AGGAACTCTATCTCCAACTT+TGG | 0.466602 | 8.4:-25745533 | None:intergenic |
GGTTGATGTTAAAGAGTTGA+AGG | 0.467608 | 8.4:+25744989 | MS.gene041933:CDS |
CTGGAGGATAGGCCTCGTCC+AGG | 0.469698 | 8.4:+25750433 | MS.gene041933:CDS |
TCAAAATGATACCTTCCAAT+GGG | 0.470455 | 8.4:-25748529 | None:intergenic |
ACCTAAACTTCAAAGGTGGC+TGG | 0.472188 | 8.4:+25746418 | MS.gene041933:CDS |
TTGCATTCCCACCTGTGAAA+AGG | 0.475193 | 8.4:+25748462 | MS.gene041933:CDS |
ATTTCTTCCATTGTGGATAA+CGG | 0.475920 | 8.4:+25752124 | MS.gene041933:CDS |
GGTCGCATTTCCGTTGGTTG+GGG | 0.477467 | 8.4:+25743992 | MS.gene041933:CDS |
AAACCTCTGGAGGCCAAAGT+TGG | 0.479488 | 8.4:+25745520 | MS.gene041933:CDS |
TGCAGCATCACCATGTGCCT+TGG | 0.480763 | 8.4:+25747266 | MS.gene041933:CDS |
GTATTTCACAAGTCGTTCAA+TGG | 0.480835 | 8.4:+25744968 | MS.gene041933:CDS |
TGGAGGATAGGCCTCGTCCA+GGG | 0.482722 | 8.4:+25750434 | MS.gene041933:CDS |
TTCCGTGTGATGATGTTAAC+TGG | 0.483577 | 8.4:+25750496 | MS.gene041933:CDS |
ATCACCATGTGCCTTGGCTG+TGG | 0.483615 | 8.4:+25747272 | MS.gene041933:CDS |
AACAACGAAGTTTATGATGA+TGG | 0.484541 | 8.4:-25743665 | None:intergenic |
GTTTCGCCAAAGCTACCAAA+TGG | 0.487686 | 8.4:+25743835 | MS.gene041933:CDS |
GGCGGTGCAAGGAACATAGA+TGG | 0.488667 | 8.4:+25745556 | MS.gene041933:CDS |
TCCAAAACTTGTTACCTCTC+CGG | 0.488744 | 8.4:-25745138 | None:intergenic |
CTGGACGAGGCCTATCCTCC+AGG | 0.491201 | 8.4:-25750432 | None:intergenic |
GTGGGATCATATGTCCTTGT+TGG | 0.491264 | 8.4:+25745113 | MS.gene041933:CDS |
CGTTGATTCACCTGGAGGAT+AGG | 0.491810 | 8.4:+25750422 | MS.gene041933:CDS |
CATTCTGGTCGCATTTCCGT+TGG | 0.493184 | 8.4:+25743986 | MS.gene041933:CDS |
TAAATGAACCATCCTGGTCC+TGG | 0.493505 | 8.4:+25752622 | MS.gene041933:CDS |
GAAATTGGGGATGTGCGAAT+AGG | 0.494228 | 8.4:-25743606 | None:intergenic |
GGCTTAATTATGGTTGGTGA+AGG | 0.494682 | 8.4:+25751756 | MS.gene041933:CDS |
ATCGATGATGCGAATCTCAC+TGG | 0.494904 | 8.4:+25743792 | MS.gene041933:CDS |
TGGTTCATTTAAACCACGTA+TGG | 0.495446 | 8.4:-25752610 | None:intergenic |
AATAGGAAAAGCGAGGTTAG+AGG | 0.496704 | 8.4:-25743589 | None:intergenic |
TGGGGAACGCTTTGGAAGGA+GGG | 0.501834 | 8.4:+25744260 | MS.gene041933:CDS |
GATGTGAAGTGAGTGGAATT+TGG | 0.503063 | 8.4:-25743541 | None:intergenic |
GTTGCGGCAGCCATGGAAAA+GGG | 0.505287 | 8.4:+25748496 | MS.gene041933:CDS |
GTTAGAGGATTTGATTCTTG+TGG | 0.505400 | 8.4:-25743574 | None:intergenic |
AGTGATTTGGGCAAAGTATG+AGG | 0.506012 | 8.4:-25743939 | None:intergenic |
TTCAAAATGATACCTTCCAA+TGG | 0.509760 | 8.4:-25748530 | None:intergenic |
TCATATGTCCTTGTTGGTGC+CGG | 0.510228 | 8.4:+25745119 | MS.gene041933:CDS |
AGGAATTTGGAAGAATAGAG+AGG | 0.513522 | 8.4:-25743636 | None:intergenic |
GATTAAGCAAAATGTAGCTC+TGG | 0.514025 | 8.4:+25752058 | MS.gene041933:intron |
AAGGATATCTCAAGAGATAT+GGG | 0.514882 | 8.4:+25750613 | MS.gene041933:CDS |
TGCTGTTAACAGTAGCAGTA+AGG | 0.516956 | 8.4:-25748956 | None:intergenic |
AACCTATTGAAAGCATCACT+TGG | 0.517138 | 8.4:+25749335 | MS.gene041933:CDS |
CTACAGAGCCTTAGGGCTCA+TGG | 0.522521 | 8.4:+25747242 | MS.gene041933:CDS |
TGACCTAGCGAATTTCTTGA+GGG | 0.523047 | 8.4:+25743860 | MS.gene041933:CDS |
CGGTCATCGCATTAGAAACA+AGG | 0.525626 | 8.4:+25748420 | MS.gene041933:CDS |
AAAGGAAGCTCTTGCTGTTG+CGG | 0.526765 | 8.4:+25748480 | MS.gene041933:CDS |
TTCCCCTGTCAAGTGCTCAA+TGG | 0.526856 | 8.4:-25745494 | None:intergenic |
AGATAAGTTGCGTCATGTAA+AGG | 0.529752 | 8.4:+25750594 | MS.gene041933:CDS |
ATGGGGAACGCTTTGGAAGG+AGG | 0.530613 | 8.4:+25744259 | MS.gene041933:CDS |
TCTTGCTGTTGCGGCAGCCA+TGG | 0.531269 | 8.4:+25748489 | MS.gene041933:CDS |
GTTATGATCGGTGTGATTTG+CGG | 0.532890 | 8.4:-25743688 | None:intergenic |
GAGAGGTTTGATAGAAATTG+GGG | 0.535581 | 8.4:-25743619 | None:intergenic |
GTTTATGATGATGGAGAATG+AGG | 0.537798 | 8.4:-25743656 | None:intergenic |
TCTCCAACTTTGGCCTCCAG+AGG | 0.537839 | 8.4:-25745523 | None:intergenic |
TTTGTTGATGCAGCTTGCAG+AGG | 0.543905 | 8.4:+25747213 | MS.gene041933:intron |
TATCGTGGACAGGAACCCTC+TGG | 0.544668 | 8.4:-25745085 | None:intergenic |
TTGACCTAGCGAATTTCTTG+AGG | 0.545240 | 8.4:+25743859 | MS.gene041933:CDS |
TATATCATGCTTCCAGGACC+AGG | 0.545479 | 8.4:-25752634 | None:intergenic |
GACAGGGGAAGTCAAACCTC+TGG | 0.545837 | 8.4:+25745507 | MS.gene041933:CDS |
GCAGGTCACGTTGATTCACC+TGG | 0.549731 | 8.4:+25750414 | MS.gene041933:intron |
TGGAAAACTTCACAATCTAC+AGG | 0.552595 | 8.4:-25745454 | None:intergenic |
ATCTCGGCAGACAACTTCAC+TGG | 0.558427 | 8.4:+25751917 | MS.gene041933:CDS |
AAGGGCACTACCCACCCCAT+TGG | 0.559044 | 8.4:+25748514 | MS.gene041933:CDS |
CATTCTGTATTGCCAAATCT+CGG | 0.561945 | 8.4:+25751901 | MS.gene041933:CDS |
TATATTACAGTTGATTGGCA+AGG | 0.564000 | 8.4:+25752653 | MS.gene041933:CDS |
TGAATAGACCTAAACTTCAA+AGG | 0.565264 | 8.4:+25746411 | MS.gene041933:CDS |
GTACCTGGTGTACTAAAGAA+TGG | 0.569445 | 8.4:-25746524 | None:intergenic |
CGAGATTTGGCAATACAGAA+TGG | 0.570862 | 8.4:-25751900 | None:intergenic |
ATGATACCTTCCAATGGGGT+GGG | 0.570870 | 8.4:-25748524 | None:intergenic |
AATGATACCTTCCAATGGGG+TGG | 0.571569 | 8.4:-25748525 | None:intergenic |
CCCACAGTTATATCGTGGAC+AGG | 0.573819 | 8.4:-25745095 | None:intergenic |
GTTCTATCTACAGAGCCTTA+GGG | 0.574940 | 8.4:+25747235 | MS.gene041933:CDS |
CCATTGCATTTGATAAAACA+GGG | 0.581955 | 8.4:+25748350 | MS.gene041933:CDS |
ATAGAGTTCCTGGCGGTGCA+AGG | 0.582278 | 8.4:+25745545 | MS.gene041933:CDS |
GTTTGTCTCAACTCCATACG+TGG | 0.582771 | 8.4:+25752597 | MS.gene041933:CDS |
TCTATGTTCCTTGCACCGCC+AGG | 0.583235 | 8.4:-25745553 | None:intergenic |
TGCTGCAACCATGAGCCCTA+AGG | 0.586386 | 8.4:-25747250 | None:intergenic |
TGCTACTGTTAACAGCATTG+AGG | 0.587811 | 8.4:+25748962 | MS.gene041933:CDS |
TGCACAGGAGCTGATTGCTG+TGG | 0.588322 | 8.4:-25747310 | None:intergenic |
AAAACAGGGACATTGACTAC+TGG | 0.589422 | 8.4:+25748364 | MS.gene041933:CDS |
TAAAATGAATTGCAGGGCTG+TGG | 0.592347 | 8.4:+25748863 | MS.gene041933:intron |
TGGCCATTCTTTAGTACACC+AGG | 0.592719 | 8.4:+25746521 | MS.gene041933:CDS |
GAAATCCCAAAACTGACGGA+AGG | 0.592946 | 8.4:-25752106 | None:intergenic |
TTACCATTGAGCACTTGACA+GGG | 0.593656 | 8.4:+25745491 | MS.gene041933:CDS |
GGAGGATAGGCCTCGTCCAG+GGG | 0.594240 | 8.4:+25750435 | MS.gene041933:CDS |
ACAGGGACATTGACTACTGG+TGG | 0.595895 | 8.4:+25748367 | MS.gene041933:CDS |
TTGTTATAGTCAGGAGCTGG+AGG | 0.596664 | 8.4:+25749308 | MS.gene041933:intron |
GTGGTTTAAATGAACCATCC+TGG | 0.596951 | 8.4:+25752616 | MS.gene041933:CDS |
AATGGCCACTTAAATACAAG+TGG | 0.597154 | 8.4:-25746506 | None:intergenic |
TTTATGGGGAACGCTTTGGA+AGG | 0.597574 | 8.4:+25744256 | MS.gene041933:CDS |
TAGTTTCTTACCCCAACCAA+CGG | 0.601581 | 8.4:-25744002 | None:intergenic |
TGGTAATTGTGGCACCGCCG+TGG | 0.601583 | 8.4:-25745474 | None:intergenic |
GTAGCAGTAAGGCCTCTACC+AGG | 0.601894 | 8.4:-25748945 | None:intergenic |
ACCTATTGAAAGCATCACTT+GGG | 0.602175 | 8.4:+25749336 | MS.gene041933:CDS |
CATCCATGTGTTAATGGCAA+TGG | 0.607256 | 8.4:+25744216 | MS.gene041933:CDS |
TGCCAATGGAGCCACAGCCA+AGG | 0.608775 | 8.4:-25747283 | None:intergenic |
TGTTATATTTGTCCTAAGAG+AGG | 0.609994 | 8.4:-25752691 | None:intergenic |
TGGTGTGGATGTGAAGTGAG+TGG | 0.610521 | 8.4:-25743548 | None:intergenic |
CTGCCATTGCCATTAACACA+TGG | 0.611691 | 8.4:-25744219 | None:intergenic |
CATCACAGGTAACAAAGACA+TGG | 0.612204 | 8.4:+25746339 | MS.gene041933:intron |
ATTGCTGTGGCATATGCCAA+TGG | 0.613253 | 8.4:-25747297 | None:intergenic |
CTGTGGTTGAACATAGTGAA+GGG | 0.614550 | 8.4:+25748880 | MS.gene041933:CDS |
GCACTACCCACCCCATTGGA+AGG | 0.620348 | 8.4:+25748518 | MS.gene041933:CDS |
ATTTGATTTCAAATACCAGA+GGG | 0.624066 | 8.4:+25745070 | MS.gene041933:CDS |
AAATCCCAAAACTGACGGAA+GGG | 0.625234 | 8.4:-25752105 | None:intergenic |
ATGCAGGTTCTCTTACATGA+AGG | 0.625523 | 8.4:+25752561 | MS.gene041933:intron |
GCTCCCTCAAGAAATTCGCT+AGG | 0.625944 | 8.4:-25743863 | None:intergenic |
GGAGCCACAGCCAAGGCACA+TGG | 0.627092 | 8.4:-25747276 | None:intergenic |
TGTCATACCGTTATCCACAA+TGG | 0.627678 | 8.4:-25752131 | None:intergenic |
CTACACACATCACAAATTCG+CGG | 0.629168 | 8.4:-25752733 | None:intergenic |
GCGTTACAGCAAAGTTGTTG+TGG | 0.631820 | 8.4:+25746454 | MS.gene041933:CDS |
AAGAGAGTTGCAAGTGCTGT+GGG | 0.633487 | 8.4:+25750538 | MS.gene041933:CDS |
TTGCAGGGCATATTACTCAA+AGG | 0.636255 | 8.4:+25748292 | MS.gene041933:intron |
AAAGAGAGTTGCAAGTGCTG+TGG | 0.636430 | 8.4:+25750537 | MS.gene041933:CDS |
GCTGTGGTTGAACATAGTGA+AGG | 0.636595 | 8.4:+25748879 | MS.gene041933:CDS |
ACAGGTAACAAAGACATGGA+AGG | 0.636600 | 8.4:+25746343 | MS.gene041933:intron |
TTACCTCTCCGGCACCAACA+AGG | 0.637057 | 8.4:-25745127 | None:intergenic |
CAGGGCATATTACTCAAAGG+TGG | 0.637638 | 8.4:+25748295 | MS.gene041933:intron |
TCCTGTCCACGATATAACTG+TGG | 0.638620 | 8.4:+25745094 | MS.gene041933:CDS |
CCTGTCCACGATATAACTGT+GGG | 0.640509 | 8.4:+25745095 | MS.gene041933:CDS |
TGTCCTTGTTGGTGCCGGAG+AGG | 0.641083 | 8.4:+25745124 | MS.gene041933:CDS |
AGATGGTAGAATAATTGTGA+AGG | 0.643350 | 8.4:+25745573 | MS.gene041933:CDS |
TCATGCTTCCAGGACCAGGA+TGG | 0.644114 | 8.4:-25752630 | None:intergenic |
GCTCTAATTGAAATGAGTGG+TGG | 0.647769 | 8.4:+25744184 | MS.gene041933:CDS |
ATGATCCCACAGTTATATCG+TGG | 0.648538 | 8.4:-25745100 | None:intergenic |
AGTATGGTTATGGTTATGAT+CGG | 0.651815 | 8.4:-25743700 | None:intergenic |
GGAAGAAATCCCAAAACTGA+CGG | 0.653538 | 8.4:-25752110 | None:intergenic |
CACCAGTTAACATCATCACA+CGG | 0.657313 | 8.4:-25750498 | None:intergenic |
CATTTGATTTCAAATACCAG+AGG | 0.660551 | 8.4:+25745069 | MS.gene041933:CDS |
TACCATTGAGCACTTGACAG+GGG | 0.669528 | 8.4:+25745492 | MS.gene041933:CDS |
GGAGTTGAGACAAACAAGCA+AGG | 0.669963 | 8.4:-25752589 | None:intergenic |
ATAGACCTAAACTTCAAAGG+TGG | 0.670685 | 8.4:+25746414 | MS.gene041933:CDS |
AGGGGAAGTCAAACCTCTGG+AGG | 0.671091 | 8.4:+25745510 | MS.gene041933:CDS |
CAGGTTCTCTTACATGAAGG+CGG | 0.671593 | 8.4:+25752564 | MS.gene041933:intron |
CAAGTGCTCAATGGTAATTG+TGG | 0.696113 | 8.4:-25745485 | None:intergenic |
GATGCTCTAATTGAAATGAG+TGG | 0.707083 | 8.4:+25744181 | MS.gene041933:CDS |
CAAAATGATACCTTCCAATG+GGG | 0.711661 | 8.4:-25748528 | None:intergenic |
TTTCAACAGAGACAGAAGGG+AGG | 0.724915 | 8.4:-25748908 | None:intergenic |
GGTCACGTTGATTCACCTGG+AGG | 0.730026 | 8.4:+25750417 | MS.gene041933:intron |
ATGTGCGAATAGGAAAAGCG+AGG | 0.738586 | 8.4:-25743596 | None:intergenic |
GTTGGAGATAGAGTTCCTGG+CGG | 0.796828 | 8.4:+25745538 | MS.gene041933:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 25743510 | 25752746 | 25743510 | ID=MS.gene041933 |
chr8.4 | mRNA | 25743510 | 25752746 | 25743510 | ID=MS.gene041933.t1;Parent=MS.gene041933 |
chr8.4 | exon | 25743510 | 25744013 | 25743510 | ID=MS.gene041933.t1.exon1;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25743510 | 25744013 | 25743510 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25744166 | 25744316 | 25744166 | ID=MS.gene041933.t1.exon2;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25744166 | 25744316 | 25744166 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25744961 | 25745145 | 25744961 | ID=MS.gene041933.t1.exon3;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25744961 | 25745145 | 25744961 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25745448 | 25745594 | 25745448 | ID=MS.gene041933.t1.exon4;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25745448 | 25745594 | 25745448 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25746347 | 25746542 | 25746347 | ID=MS.gene041933.t1.exon5;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25746347 | 25746542 | 25746347 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25747226 | 25747338 | 25747226 | ID=MS.gene041933.t1.exon6;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25747226 | 25747338 | 25747226 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25748298 | 25748539 | 25748298 | ID=MS.gene041933.t1.exon7;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25748298 | 25748539 | 25748298 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25748878 | 25748983 | 25748878 | ID=MS.gene041933.t1.exon8;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25748878 | 25748983 | 25748878 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25749317 | 25749481 | 25749317 | ID=MS.gene041933.t1.exon9;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25749317 | 25749481 | 25749317 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25750418 | 25750634 | 25750418 | ID=MS.gene041933.t1.exon10;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25750418 | 25750634 | 25750418 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25751751 | 25751938 | 25751751 | ID=MS.gene041933.t1.exon11;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25751751 | 25751938 | 25751751 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25752059 | 25752145 | 25752059 | ID=MS.gene041933.t1.exon12;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25752059 | 25752145 | 25752059 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
chr8.4 | exon | 25752567 | 25752746 | 25752567 | ID=MS.gene041933.t1.exon13;Parent=MS.gene041933.t1 |
chr8.4 | CDS | 25752567 | 25752746 | 25752567 | ID=cds.MS.gene041933.t1;Parent=MS.gene041933.t1 |
Gene Sequence |
Protein sequence |