AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042014

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042014.t1 MTR_8g087770 96.296 675 24 1 1 675 1 674 0.0 1316
MS.gene042014.t1 MTR_8g087750 81.845 672 112 5 6 672 11 677 0.0 1107
MS.gene042014.t1 MTR_8g087763 77.434 226 50 1 374 599 4 228 5.56e-123 369
MS.gene042014.t1 MTR_4g093750 34.080 402 238 13 67 452 35 425 2.21e-42 164
MS.gene042014.t1 MTR_4g093750 34.158 404 237 14 67 452 35 427 2.28e-41 161
MS.gene042014.t1 MTR_2g009690 32.170 401 255 10 63 452 40 434 6.04e-40 157
MS.gene042014.t1 MTR_1g032550 35.336 283 163 7 69 337 35 311 5.84e-33 135
MS.gene042014.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.12e-32 134
MS.gene042014.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.16e-32 134
MS.gene042014.t1 MTR_5g009150 29.310 464 300 14 69 518 35 484 8.53e-32 131
MS.gene042014.t1 MTR_7g451010 35.274 292 165 8 69 346 40 321 1.90e-31 130
MS.gene042014.t1 MTR_4g085860 75.641 78 18 1 206 282 2 79 6.65e-31 116
MS.gene042014.t1 MTR_8g099550 33.438 317 185 9 69 369 34 340 7.11e-31 128
MS.gene042014.t1 MTR_8g009510 34.494 316 183 9 69 369 40 346 9.11e-31 128
MS.gene042014.t1 MTR_8g027675 41.709 199 105 5 69 264 34 224 1.39e-30 127
MS.gene042014.t1 MTR_4g098920 34.169 319 180 10 69 369 34 340 5.40e-30 125
MS.gene042014.t1 MTR_6g045107 74.359 78 19 1 206 282 2 79 5.80e-29 110
MS.gene042014.t1 MTR_8g009510 30.488 246 151 6 136 369 2 239 3.11e-16 82.8
MS.gene042014.t1 MTR_8g463270 30.303 231 142 8 54 269 27 253 1.55e-15 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042014.t1 AT1G60500 55.506 672 287 4 3 668 2 667 0.0 756
MS.gene042014.t1 AT1G60530 71.034 290 76 1 18 307 19 300 5.23e-141 414
MS.gene042014.t1 AT4G33650 30.858 431 274 12 37 452 31 452 1.24e-40 159
MS.gene042014.t1 AT4G33650 30.858 431 274 12 37 452 31 452 1.30e-40 159
MS.gene042014.t1 AT2G14120 26.286 525 358 11 25 530 1 515 3.41e-39 154
MS.gene042014.t1 AT2G14120 26.286 525 358 11 25 530 1 515 4.91e-39 154
MS.gene042014.t1 AT2G14120 26.286 525 358 11 25 530 1 515 4.91e-39 154
MS.gene042014.t1 AT2G14120 31.742 356 218 8 25 362 1 349 3.68e-38 152
MS.gene042014.t1 AT1G14830 34.892 278 171 5 69 337 35 311 1.59e-34 139
MS.gene042014.t1 AT3G60190 32.903 310 196 6 69 369 40 346 1.01e-31 131
MS.gene042014.t1 AT5G42080 29.374 463 301 11 69 518 34 483 1.11e-31 131
MS.gene042014.t1 AT5G42080 29.374 463 301 11 69 518 34 483 1.11e-31 131
MS.gene042014.t1 AT5G42080 33.548 310 194 6 69 369 34 340 1.31e-31 128
MS.gene042014.t1 AT5G42080 33.548 310 194 6 69 369 34 340 2.76e-31 129
MS.gene042014.t1 AT2G44590 32.639 288 176 7 69 345 35 315 8.18e-31 128
MS.gene042014.t1 AT3G61760 41.176 204 110 5 69 268 34 231 5.03e-30 124
MS.gene042014.t1 AT3G61760 41.176 204 110 5 69 268 34 231 6.03e-30 125
MS.gene042014.t1 AT3G61760 41.176 204 110 5 69 268 34 231 6.66e-30 125
MS.gene042014.t1 AT2G44590 29.514 288 168 8 69 345 35 298 2.00e-21 99.4
MS.gene042014.t1 AT2G44590 29.514 288 168 8 69 345 35 298 2.21e-21 99.4
MS.gene042014.t1 AT1G53140 27.731 238 156 8 44 269 36 269 2.59e-14 77.0

Find 124 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGTCTCCATCTATTTC+TGG 0.166668 6.1:-57289930 MS.gene042014:CDS
CATTGTTGGTATTCCTGTTT+TGG 0.198486 6.1:-57290927 MS.gene042014:CDS
GCAGTTCTTGGCATGAAATT+TGG 0.208693 6.1:+57290530 None:intergenic
TTAGTACTTGTGAGTCTATT+AGG 0.242558 6.1:-57291177 MS.gene042014:CDS
ATCAAGTTTGTTTGCCTTTG+TGG 0.244719 6.1:+57291813 None:intergenic
CTTGAGGAAGCTAAGTTAAT+TGG 0.255531 6.1:-57290557 MS.gene042014:CDS
AATGTTTGAAAAGCAGTTCT+TGG 0.267563 6.1:+57290518 None:intergenic
TTTGAGAAAGATTCTTCTAA+TGG 0.285565 6.1:-57290723 MS.gene042014:CDS
TGACAATGTGTGGAGCTATT+TGG 0.298324 6.1:-57290447 MS.gene042014:CDS
ATCTGATCATAAATGTTATC+AGG 0.304162 6.1:+57291274 None:intergenic
TAACATTTATGATCAGATTA+AGG 0.317964 6.1:-57291269 MS.gene042014:CDS
CTTCCAACCATTGTTGTTGT+TGG 0.322456 6.1:-57291631 MS.gene042014:CDS
TGATGATGTTAACATTGGTT+TGG 0.323376 6.1:-57291059 MS.gene042014:CDS
TTGAGGATAATGCTCTCTTC+AGG 0.331421 6.1:+57291223 None:intergenic
GCCTGCCAATTTGACTTCAT+TGG 0.333846 6.1:-57290795 MS.gene042014:CDS
AGAGACTGTGGCCAACATTA+TGG 0.346194 6.1:-57289859 MS.gene042014:CDS
TTATACTCCAATACAAGTTC+TGG 0.358296 6.1:+57291484 None:intergenic
ATCTGCCAATGAAGTCAAAT+TGG 0.360580 6.1:+57290790 None:intergenic
GCTCATTGATAGTATTGCTT+TGG 0.360639 6.1:-57290042 MS.gene042014:CDS
CAAGGGTACCTTTGGTTATG+AGG 0.366182 6.1:-57291531 MS.gene042014:CDS
CAATGCATTTGTTTATCATC+AGG 0.370755 6.1:+57290683 None:intergenic
CTTACTATGGTTGATCTTCC+AGG 0.371036 6.1:-57291325 MS.gene042014:CDS
TGCAAACTATTACCAGTTGC+AGG 0.374084 6.1:-57290390 MS.gene042014:CDS
TGGCGTTCCTGACCTTACTA+TGG 0.376759 6.1:-57291338 MS.gene042014:CDS
TCAAGTACTGTGAAGCTTGA+AGG 0.378498 6.1:-57290176 MS.gene042014:CDS
TTGAGAAAGATTCTTCTAAT+GGG 0.379749 6.1:-57290722 MS.gene042014:CDS
ACTTTCTCCAACAAACCTTC+AGG 0.384947 6.1:+57291088 None:intergenic
GATGATGTTAACATTGGTTT+GGG 0.391771 6.1:-57291058 MS.gene042014:CDS
TTGATCTTCTTAATTATCTC+AGG 0.396848 6.1:+57290857 None:intergenic
TCACAGATAGTTGATAAAAC+TGG 0.398319 6.1:-57291151 MS.gene042014:CDS
AGGCAAGATTAATTGCCTAT+TGG 0.399341 6.1:-57290082 MS.gene042014:CDS
AAGATTGACAAATCCATTGT+TGG 0.402415 6.1:-57290941 MS.gene042014:CDS
TCCGATCAATGTGTTGAATC+AGG 0.406853 6.1:-57290117 MS.gene042014:CDS
ATGGACAGGATTGGAGTCTA+TGG 0.410033 6.1:-57289840 MS.gene042014:CDS
GAATCAGGCCTTTGACTTGA+AGG 0.413968 6.1:-57290102 MS.gene042014:CDS
TTGATGCTCTTGAAAATCTA+AGG 0.416842 6.1:-57291684 MS.gene042014:CDS
GAACTTGTATTGGAGTATAA+TGG 0.418501 6.1:-57291481 MS.gene042014:CDS
TGTTATGCAAGCTGTTGATA+TGG 0.422633 6.1:-57290306 MS.gene042014:CDS
TTGTAATCCGGAGTACTTGC+AGG 0.423704 6.1:-57290264 MS.gene042014:CDS
AATTTGTACAAGGGTACCTT+TGG 0.424069 6.1:-57291539 MS.gene042014:CDS
TGTCTCTTACCAGAAATAGA+TGG 0.425419 6.1:+57289921 None:intergenic
ATAACACGTGTTCCTGTTCA+TGG 0.432617 6.1:-57291301 MS.gene042014:CDS
GGACTACGATCTCTTCCATT+AGG 0.434291 6.1:+57290579 None:intergenic
TAAATCACCTGAAGGTTTGT+TGG 0.440077 6.1:-57291095 MS.gene042014:CDS
CCTCAGCACAATCTTCCAAT+AGG 0.443004 6.1:+57290067 None:intergenic
TCCACAGCCAGAACTTGTAT+TGG 0.443641 6.1:-57291491 MS.gene042014:CDS
TCATTATAAGAAGATACAAT+TGG 0.444707 6.1:+57291724 None:intergenic
TTCTACAAAGGATTTCCTAA+TGG 0.446044 6.1:-57290594 MS.gene042014:CDS
GTTCTGGCTGTGGAAGTAGA+TGG 0.452578 6.1:+57291500 None:intergenic
ACAGCTACTGAAGAGCTTGC+TGG 0.453969 6.1:-57291412 MS.gene042014:CDS
ACATTGTCAACAAAATTAGT+TGG 0.454264 6.1:+57290461 None:intergenic
GCATTGTACTGCTCGGTTAG+TGG 0.455271 6.1:-57290666 MS.gene042014:CDS
TACGAGTAGCAACCTGCAAC+TGG 0.461514 6.1:+57290378 None:intergenic
TGATAGCAGCTAATGATTCA+AGG 0.467025 6.1:+57291581 None:intergenic
TTCATTTCTAGCTTCTTCAT+AGG 0.469616 6.1:+57291000 None:intergenic
ACAAGCTTCTGAGCCAAAAC+AGG 0.473524 6.1:+57290914 None:intergenic
GTTGTTGGAGATCAATCATC+TGG 0.485196 6.1:-57291616 MS.gene042014:CDS
TGAGGATAATGCTCTCTTCA+GGG 0.487134 6.1:+57291224 None:intergenic
TGGAGTGTTTGAAATCCCTT+TGG 0.490204 6.1:+57291384 None:intergenic
TTATCAGGTTGACCATGAAC+AGG 0.495576 6.1:+57291289 None:intergenic
CACGGATTACACTTGTAATC+CGG 0.499086 6.1:-57290276 MS.gene042014:CDS
GAGCTTGCTGGAACTGCCAA+AGG 0.500559 6.1:-57291400 MS.gene042014:CDS
GCCAATGAAGTCAAATTGGC+AGG 0.504122 6.1:+57290794 None:intergenic
CAACAACAATGGTTGGAAGC+TGG 0.505287 6.1:+57291635 None:intergenic
GCGTCTCAACATTGCTAAAG+AGG 0.507977 6.1:-57291662 MS.gene042014:CDS
AGCTTGCATAACATGTTGAA+TGG 0.508185 6.1:+57290316 None:intergenic
ACAATTGGTGCAATAGATAG+AGG 0.511162 6.1:+57291739 None:intergenic
TTTGTGTGAGAAATCGCATT+GGG 0.515555 6.1:-57291030 MS.gene042014:CDS
GTAAGAGACAAAGTTTAAGC+AGG 0.516534 6.1:-57289908 MS.gene042014:CDS
GGTGCAATAGATAGAGGTTG+AGG 0.516825 6.1:+57291745 None:intergenic
AATGCATTTGTTTATCATCA+GGG 0.517273 6.1:+57290684 None:intergenic
TCCAATCCTGTCCATAATGT+TGG 0.522411 6.1:+57289848 None:intergenic
CTGGAAGATCAACCATAGTA+AGG 0.523030 6.1:+57291326 None:intergenic
AGATCAACCATAGTAAGGTC+AGG 0.534194 6.1:+57291331 None:intergenic
TAATCTTGCCTTCAAGTCAA+AGG 0.534214 6.1:+57290094 None:intergenic
TTATATTCCTGCAAGTACTC+CGG 0.534562 6.1:+57290257 None:intergenic
GCCAACATTATGGACAGGAT+TGG 0.534644 6.1:-57289849 MS.gene042014:CDS
GCCTGATTCAACACATTGAT+CGG 0.536471 6.1:+57290116 None:intergenic
ATCAGCTTGCCACGTGGACA+AGG 0.537919 6.1:-57291562 MS.gene042014:CDS
AAGGAGATTTGTAATGAACT+TGG 0.538785 6.1:-57289975 MS.gene042014:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 6.1:-57291257 MS.gene042014:CDS
ACTTTGATTGTGAAGAAGAA+TGG 0.548085 6.1:-57291358 MS.gene042014:CDS
ATGTGTGGAGCTATTTGGAA+AGG 0.549884 6.1:-57290442 MS.gene042014:CDS
AACAAATGCATTGTACTGCT+CGG 0.550416 6.1:-57290673 MS.gene042014:CDS
TCCAATACAAGTTCTGGCTG+TGG 0.550764 6.1:+57291490 None:intergenic
TCTCCAACAACAACAATGGT+TGG 0.551269 6.1:+57291628 None:intergenic
GAGATTTGTAATGAACTTGG+TGG 0.560761 6.1:-57289972 MS.gene042014:CDS
TTCTTCACAATCAAAGTCAG+TGG 0.564699 6.1:+57291364 None:intergenic
TAGTTGATAAAACTGGTTTG+AGG 0.569831 6.1:-57291144 MS.gene042014:CDS
CTGTGGCCAACATTATGGAC+AGG 0.573065 6.1:-57289854 MS.gene042014:CDS
ACAGGAACACGTGTTATACC+TGG 0.574564 6.1:+57291307 None:intergenic
GACATTAGCTGTTGTAACAA+AGG 0.576294 6.1:-57291122 MS.gene042014:CDS
ATTACTTCAGAGAAAAGTGA+AGG 0.577066 6.1:-57290498 MS.gene042014:CDS
AGCTTGCTGGAACTGCCAAA+GGG 0.584621 6.1:-57291399 MS.gene042014:CDS
GTGGACAAGGAATTTGTACA+AGG 0.592993 6.1:-57291549 MS.gene042014:CDS
CAGTGTTGAGAGGCTGCTTG+AGG 0.594487 6.1:-57289949 MS.gene042014:CDS
CGTCTCAACATTGCTAAAGA+GGG 0.595388 6.1:-57291661 MS.gene042014:CDS
GGAAGAGATCGTAGTCCTTG+AGG 0.596070 6.1:-57290573 MS.gene042014:CDS
ATTGGAAGATTGTGCTGAGG+AGG 0.597029 6.1:-57290064 MS.gene042014:CDS
GAGGATAATGCTCTCTTCAG+GGG 0.598487 6.1:+57291225 None:intergenic
TGTGAGAAATCGCATTGGGG+AGG 0.608396 6.1:-57291026 MS.gene042014:CDS
GGTTGCTACTCGTAGAGCTG+TGG 0.612719 6.1:-57290369 MS.gene042014:CDS
TGTGTGGAGCTATTTGGAAA+GGG 0.616400 6.1:-57290441 MS.gene042014:CDS
CAATTAACTTAGCTTCCTCA+AGG 0.618556 6.1:+57290558 None:intergenic
CAAAACAGGAATACCAACAA+TGG 0.623000 6.1:+57290928 None:intergenic
GATTAACAATGATCTGCAGA+AGG 0.625104 6.1:-57289994 MS.gene042014:CDS
ACTGCTGATGATGTTAACAT+TGG 0.625783 6.1:-57291064 MS.gene042014:CDS
AAGGCTGATAAATCACCTGA+AGG 0.627415 6.1:-57291103 MS.gene042014:CDS
TGCTGAAAGTGATTCTACAA+AGG 0.631584 6.1:-57290606 MS.gene042014:CDS
TTGATCTCCAACAACAACAA+TGG 0.648908 6.1:+57291624 None:intergenic
TAGAGAAAGCAAAGAGACTG+TGG 0.654791 6.1:-57289871 MS.gene042014:CDS
GTACAAATTCCTTGTCCACG+TGG 0.660130 6.1:+57291553 None:intergenic
TTACTTCAGAGAAAAGTGAA+GGG 0.662697 6.1:-57290497 MS.gene042014:CDS
TGTTGATATGGAGAAGCACA+CGG 0.665028 6.1:-57290294 MS.gene042014:CDS
AACTTGGTGGCAGTGTTGAG+AGG 0.665158 6.1:-57289959 MS.gene042014:CDS
CAGTAGCAGAAAGAACATTG+AGG 0.676780 6.1:+57291206 None:intergenic
GTTTGTGTGAGAAATCGCAT+TGG 0.677044 6.1:-57291031 MS.gene042014:CDS
GCTGCTATCAGCTTGCCACG+TGG 0.703866 6.1:-57291568 MS.gene042014:CDS
GTTGATCATCAACATCAACA+TGG 0.706155 6.1:+57291767 None:intergenic
TGGAAACAAGAGTTCCACAA+AGG 0.707464 6.1:-57291827 MS.gene042014:CDS
CCTATTGGAAGATTGTGCTG+AGG 0.716472 6.1:-57290067 MS.gene042014:CDS
TGGACAAGGAATTTGTACAA+GGG 0.728664 6.1:-57291548 MS.gene042014:CDS
TTGTGTGAGAAATCGCATTG+GGG 0.740526 6.1:-57291029 MS.gene042014:CDS
ACTGGTAATAGTTTGCAGAG+TGG 0.741343 6.1:+57290396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATTTATGATCAGATTA+AGG - chr6.1:57290396-57290415 MS.gene042014:CDS 20.0%
!! TCATTATAAGAAGATACAAT+TGG + chr6.1:57289944-57289963 None:intergenic 20.0%
!!! AGCATTTTTGAAAAAAGTTT+TGG - chr6.1:57291452-57291471 MS.gene042014:CDS 20.0%
!!! CAAAGTTTTTGAAATAATCA+TGG + chr6.1:57290788-57290807 None:intergenic 20.0%
! AATGCATTTGTTTATCATCA+GGG + chr6.1:57290984-57291003 None:intergenic 25.0%
! ACATTGTCAACAAAATTAGT+TGG + chr6.1:57291207-57291226 None:intergenic 25.0%
! ATCTGATCATAAATGTTATC+AGG + chr6.1:57290394-57290413 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG - chr6.1:57290408-57290427 MS.gene042014:CDS 25.0%
! TTGAGAAAGATTCTTCTAAT+GGG - chr6.1:57290943-57290962 MS.gene042014:CDS 25.0%
! TTGATCTTCTTAATTATCTC+AGG + chr6.1:57290811-57290830 None:intergenic 25.0%
! TTTGAGAAAGATTCTTCTAA+TGG - chr6.1:57290942-57290961 MS.gene042014:CDS 25.0%
AAGATTGACAAATCCATTGT+TGG - chr6.1:57290724-57290743 MS.gene042014:CDS 30.0%
AAGGAGATTTGTAATGAACT+TGG - chr6.1:57291690-57291709 MS.gene042014:CDS 30.0%
AATGTTTGAAAAGCAGTTCT+TGG + chr6.1:57291150-57291169 None:intergenic 30.0%
ACTTTGATTGTGAAGAAGAA+TGG - chr6.1:57290307-57290326 MS.gene042014:CDS 30.0%
ATTACTTCAGAGAAAAGTGA+AGG - chr6.1:57291167-57291186 MS.gene042014:CDS 30.0%
CAATGCATTTGTTTATCATC+AGG + chr6.1:57290985-57291004 None:intergenic 30.0%
GAACTTGTATTGGAGTATAA+TGG - chr6.1:57290184-57290203 MS.gene042014:CDS 30.0%
TTACTTCAGAGAAAAGTGAA+GGG - chr6.1:57291168-57291187 MS.gene042014:CDS 30.0%
TTAGTACTTGTGAGTCTATT+AGG - chr6.1:57290488-57290507 MS.gene042014:CDS 30.0%
TTATACTCCAATACAAGTTC+TGG + chr6.1:57290184-57290203 None:intergenic 30.0%
TTCTACAAAGGATTTCCTAA+TGG - chr6.1:57291071-57291090 MS.gene042014:CDS 30.0%
TTGATGCTCTTGAAAATCTA+AGG - chr6.1:57289981-57290000 MS.gene042014:CDS 30.0%
! CTAATTTTGTTGACAATGTG+TGG - chr6.1:57291208-57291227 MS.gene042014:CDS 30.0%
! TGATGATGTTAACATTGGTT+TGG - chr6.1:57290606-57290625 MS.gene042014:CDS 30.0%
!! GATGATGTTAACATTGGTTT+GGG - chr6.1:57290607-57290626 MS.gene042014:CDS 30.0%
!! TAGTTGATAAAACTGGTTTG+AGG - chr6.1:57290521-57290540 MS.gene042014:CDS 30.0%
!! TCACAGATAGTTGATAAAAC+TGG - chr6.1:57290514-57290533 MS.gene042014:CDS 30.0%
!! TTCATTTCTAGCTTCTTCAT+AGG + chr6.1:57290668-57290687 None:intergenic 30.0%
AACAAATGCATTGTACTGCT+CGG - chr6.1:57290992-57291011 MS.gene042014:CDS 35.0%
ACAATTGGTGCAATAGATAG+AGG + chr6.1:57289929-57289948 None:intergenic 35.0%
AGCTTGCATAACATGTTGAA+TGG + chr6.1:57291352-57291371 None:intergenic 35.0%
AGGCAAGATTAATTGCCTAT+TGG - chr6.1:57291583-57291602 MS.gene042014:CDS 35.0%
ATCTGCCAATGAAGTCAAAT+TGG + chr6.1:57290878-57290897 None:intergenic 35.0%
CAAAACAGGAATACCAACAA+TGG + chr6.1:57290740-57290759 None:intergenic 35.0%
CAATTAACTTAGCTTCCTCA+AGG + chr6.1:57291110-57291129 None:intergenic 35.0%
CTTGAGGAAGCTAAGTTAAT+TGG - chr6.1:57291108-57291127 MS.gene042014:CDS 35.0%
GACATTAGCTGTTGTAACAA+AGG - chr6.1:57290543-57290562 MS.gene042014:CDS 35.0%
GAGATTTGTAATGAACTTGG+TGG - chr6.1:57291693-57291712 MS.gene042014:CDS 35.0%
GATTAACAATGATCTGCAGA+AGG - chr6.1:57291671-57291690 MS.gene042014:CDS 35.0%
GTAAGAGACAAAGTTTAAGC+AGG - chr6.1:57291757-57291776 MS.gene042014:CDS 35.0%
GTTGATCATCAACATCAACA+TGG + chr6.1:57289901-57289920 None:intergenic 35.0%
TAAATCACCTGAAGGTTTGT+TGG - chr6.1:57290570-57290589 MS.gene042014:CDS 35.0%
TAATCTTGCCTTCAAGTCAA+AGG + chr6.1:57291574-57291593 None:intergenic 35.0%
TGATAGCAGCTAATGATTCA+AGG + chr6.1:57290087-57290106 None:intergenic 35.0%
TGCTGAAAGTGATTCTACAA+AGG - chr6.1:57291059-57291078 MS.gene042014:CDS 35.0%
TGGACAAGGAATTTGTACAA+GGG - chr6.1:57290117-57290136 MS.gene042014:CDS 35.0%
TGTCTCTTACCAGAAATAGA+TGG + chr6.1:57291747-57291766 None:intergenic 35.0%
TGTTATGCAAGCTGTTGATA+TGG - chr6.1:57291359-57291378 MS.gene042014:CDS 35.0%
TTATATTCCTGCAAGTACTC+CGG + chr6.1:57291411-57291430 None:intergenic 35.0%
TTCTTCACAATCAAAGTCAG+TGG + chr6.1:57290304-57290323 None:intergenic 35.0%
TTGATCTCCAACAACAACAA+TGG + chr6.1:57290044-57290063 None:intergenic 35.0%
TTTGTGTGAGAAATCGCATT+GGG - chr6.1:57290635-57290654 MS.gene042014:CDS 35.0%
! ACTGCTGATGATGTTAACAT+TGG - chr6.1:57290601-57290620 MS.gene042014:CDS 35.0%
! ATCAAGTTTGTTTGCCTTTG+TGG + chr6.1:57289855-57289874 None:intergenic 35.0%
! CATTGTTGGTATTCCTGTTT+TGG - chr6.1:57290738-57290757 MS.gene042014:CDS 35.0%
! GCTCATTGATAGTATTGCTT+TGG - chr6.1:57291623-57291642 MS.gene042014:CDS 35.0%
!! AATTTGTACAAGGGTACCTT+TGG - chr6.1:57290126-57290145 MS.gene042014:CDS 35.0%
AAGGCTGATAAATCACCTGA+AGG - chr6.1:57290562-57290581 MS.gene042014:CDS 40.0%
ACTTTCTCCAACAAACCTTC+AGG + chr6.1:57290580-57290599 None:intergenic 40.0%
AGATCAACCATAGTAAGGTC+AGG + chr6.1:57290337-57290356 None:intergenic 40.0%
ATAACACGTGTTCCTGTTCA+TGG - chr6.1:57290364-57290383 MS.gene042014:CDS 40.0%
ATGTGTGGAGCTATTTGGAA+AGG - chr6.1:57291223-57291242 MS.gene042014:CDS 40.0%
CAGTAGCAGAAAGAACATTG+AGG + chr6.1:57290462-57290481 None:intergenic 40.0%
CGTCTCAACATTGCTAAAGA+GGG - chr6.1:57290004-57290023 MS.gene042014:CDS 40.0%
CTGGAAGATCAACCATAGTA+AGG + chr6.1:57290342-57290361 None:intergenic 40.0%
CTTACTATGGTTGATCTTCC+AGG - chr6.1:57290340-57290359 MS.gene042014:CDS 40.0%
GCAGTTCTTGGCATGAAATT+TGG + chr6.1:57291138-57291157 None:intergenic 40.0%
GCCTGATTCAACACATTGAT+CGG + chr6.1:57291552-57291571 None:intergenic 40.0%
GTGGACAAGGAATTTGTACA+AGG - chr6.1:57290116-57290135 MS.gene042014:CDS 40.0%
GTTGTTGGAGATCAATCATC+TGG - chr6.1:57290049-57290068 MS.gene042014:CDS 40.0%
GTTTGTGTGAGAAATCGCAT+TGG - chr6.1:57290634-57290653 MS.gene042014:CDS 40.0%
TAGAGAAAGCAAAGAGACTG+TGG - chr6.1:57291794-57291813 MS.gene042014:CDS 40.0%
TCCAATCCTGTCCATAATGT+TGG + chr6.1:57291820-57291839 None:intergenic 40.0%
TCCGATCAATGTGTTGAATC+AGG - chr6.1:57291548-57291567 MS.gene042014:CDS 40.0%
TCTCCAACAACAACAATGGT+TGG + chr6.1:57290040-57290059 None:intergenic 40.0%
TGACAATGTGTGGAGCTATT+TGG - chr6.1:57291218-57291237 MS.gene042014:CDS 40.0%
TGAGGATAATGCTCTCTTCA+GGG + chr6.1:57290444-57290463 None:intergenic 40.0%
TGCAAACTATTACCAGTTGC+AGG - chr6.1:57291275-57291294 MS.gene042014:CDS 40.0%
TGGAAACAAGAGTTCCACAA+AGG - chr6.1:57289838-57289857 MS.gene042014:CDS 40.0%
TGTGTGGAGCTATTTGGAAA+GGG - chr6.1:57291224-57291243 MS.gene042014:CDS 40.0%
TTGAGGATAATGCTCTCTTC+AGG + chr6.1:57290445-57290464 None:intergenic 40.0%
TTGTGTGAGAAATCGCATTG+GGG - chr6.1:57290636-57290655 MS.gene042014:CDS 40.0%
! ACTGGTAATAGTTTGCAGAG+TGG + chr6.1:57291272-57291291 None:intergenic 40.0%
! CACGGATTACACTTGTAATC+CGG - chr6.1:57291389-57291408 MS.gene042014:CDS 40.0%
! CTTCCAACCATTGTTGTTGT+TGG - chr6.1:57290034-57290053 MS.gene042014:CDS 40.0%
! TCAAGTACTGTGAAGCTTGA+AGG - chr6.1:57291489-57291508 MS.gene042014:CDS 40.0%
! TGGAGTGTTTGAAATCCCTT+TGG + chr6.1:57290284-57290303 None:intergenic 40.0%
! TGTTGATATGGAGAAGCACA+CGG - chr6.1:57291371-57291390 MS.gene042014:CDS 40.0%
! TTTTGCAGCCTCATAACCAA+AGG + chr6.1:57290145-57290164 None:intergenic 40.0%
!! TTATCAGGTTGACCATGAAC+AGG + chr6.1:57290379-57290398 None:intergenic 40.0%
!!! TTTTCAAGAGCATCAAGCAC+TGG + chr6.1:57289977-57289996 None:intergenic 40.0%
ACAAGCTTCTGAGCCAAAAC+AGG + chr6.1:57290754-57290773 None:intergenic 45.0%
ACAGGAACACGTGTTATACC+TGG + chr6.1:57290361-57290380 None:intergenic 45.0%
AGAGACTGTGGCCAACATTA+TGG - chr6.1:57291806-57291825 MS.gene042014:CDS 45.0%
ATGGACAGGATTGGAGTCTA+TGG - chr6.1:57291825-57291844 MS.gene042014:CDS 45.0%
ATTGGAAGATTGTGCTGAGG+AGG - chr6.1:57291601-57291620 MS.gene042014:CDS 45.0%
CAACAACAATGGTTGGAAGC+TGG + chr6.1:57290033-57290052 None:intergenic 45.0%
CCTATTGGAAGATTGTGCTG+AGG - chr6.1:57291598-57291617 MS.gene042014:CDS 45.0%
CCTCAGCACAATCTTCCAAT+AGG + chr6.1:57291601-57291620 None:intergenic 45.0%
GAGGAGTCTCCATCTATTTC+TGG - chr6.1:57291735-57291754 MS.gene042014:CDS 45.0%
GAGGATAATGCTCTCTTCAG+GGG + chr6.1:57290443-57290462 None:intergenic 45.0%
GCCAACATTATGGACAGGAT+TGG - chr6.1:57291816-57291835 MS.gene042014:CDS 45.0%
GCCAATGAAGTCAAATTGGC+AGG + chr6.1:57290874-57290893 None:intergenic 45.0%
GCGTCTCAACATTGCTAAAG+AGG - chr6.1:57290003-57290022 MS.gene042014:CDS 45.0%
GGACTACGATCTCTTCCATT+AGG + chr6.1:57291089-57291108 None:intergenic 45.0%
GGTGCAATAGATAGAGGTTG+AGG + chr6.1:57289923-57289942 None:intergenic 45.0%
GTACAAATTCCTTGTCCACG+TGG + chr6.1:57290115-57290134 None:intergenic 45.0%
TCCACAGCCAGAACTTGTAT+TGG - chr6.1:57290174-57290193 MS.gene042014:CDS 45.0%
! GCCTGCCAATTTGACTTCAT+TGG - chr6.1:57290870-57290889 MS.gene042014:CDS 45.0%
! TCCAATACAAGTTCTGGCTG+TGG + chr6.1:57290178-57290197 None:intergenic 45.0%
! TTGTAATCCGGAGTACTTGC+AGG - chr6.1:57291401-57291420 MS.gene042014:CDS 45.0%
!! CAAGGGTACCTTTGGTTATG+AGG - chr6.1:57290134-57290153 MS.gene042014:CDS 45.0%
!! GAATCAGGCCTTTGACTTGA+AGG - chr6.1:57291563-57291582 MS.gene042014:CDS 45.0%
ACAGCTACTGAAGAGCTTGC+TGG - chr6.1:57290253-57290272 MS.gene042014:CDS 50.0%
CTGTGGCCAACATTATGGAC+AGG - chr6.1:57291811-57291830 MS.gene042014:CDS 50.0%
GCATTGTACTGCTCGGTTAG+TGG - chr6.1:57290999-57291018 MS.gene042014:CDS 50.0%
GGAAGAGATCGTAGTCCTTG+AGG - chr6.1:57291092-57291111 MS.gene042014:CDS 50.0%
TACGAGTAGCAACCTGCAAC+TGG + chr6.1:57291290-57291309 None:intergenic 50.0%
TGGCGTTCCTGACCTTACTA+TGG - chr6.1:57290327-57290346 MS.gene042014:CDS 50.0%
TGTGAGAAATCGCATTGGGG+AGG - chr6.1:57290639-57290658 MS.gene042014:CDS 50.0%
! AACTTGGTGGCAGTGTTGAG+AGG - chr6.1:57291706-57291725 MS.gene042014:CDS 50.0%
! GTTCTGGCTGTGGAAGTAGA+TGG + chr6.1:57290168-57290187 None:intergenic 50.0%
!! AGCTTGCTGGAACTGCCAAA+GGG - chr6.1:57290266-57290285 MS.gene042014:CDS 50.0%
ATCAGCTTGCCACGTGGACA+AGG - chr6.1:57290103-57290122 MS.gene042014:CDS 55.0%
GGTTGCTACTCGTAGAGCTG+TGG - chr6.1:57291296-57291315 MS.gene042014:CDS 55.0%
! CAGTGTTGAGAGGCTGCTTG+AGG - chr6.1:57291716-57291735 MS.gene042014:CDS 55.0%
!! GAGCTTGCTGGAACTGCCAA+AGG - chr6.1:57290265-57290284 MS.gene042014:CDS 55.0%
GCTGCTATCAGCTTGCCACG+TGG - chr6.1:57290097-57290116 MS.gene042014:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 57289830 57291857 57289830 ID=MS.gene042014
chr6.1 mRNA 57289830 57291857 57289830 ID=MS.gene042014.t1;Parent=MS.gene042014
chr6.1 exon 57289830 57291857 57289830 ID=MS.gene042014.t1.exon1;Parent=MS.gene042014.t1
chr6.1 CDS 57289830 57291857 57289830 ID=cds.MS.gene042014.t1;Parent=MS.gene042014.t1
Gene Sequence

>MS.gene042014

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAACAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTATTGCACCAATTGTATCTTCTTATAATGAAAAGATACGTCCAGTGCTTGATGCTCTTGAAAATCTAAGGCGTCTCAACATTGCTAAAGAGGGTATCCAGCTTCCAACCATTGTTGTTGTTGGAGATCAATCATCTGGAAAGTCTAGTGTCCTTGAATCATTAGCTGCTATCAGCTTGCCACGTGGACAAGGAATTTGTACAAGGGTACCTTTGGTTATGAGGCTGCAAAACCATCTACTTCCACAGCCAGAACTTGTATTGGAGTATAATGGCAAACATGTTTTAACTGATGAAGCAAATGTCTCTGATGCAATAAACACAGCTACTGAAGAGCTTGCTGGAACTGCCAAAGGGATTTCAAACACTCCACTGACTTTGATTGTGAAGAAGAATGGCGTTCCTGACCTTACTATGGTTGATCTTCCAGGTATAACACGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACCCCTGAAGAGAGCATTATCCTCAATGTTCTTTCTGCTACTGTCGATTTTAGTACTTGTGAGTCTATTAGGATGTCACAGATAGTTGATAAAACTGGTTTGAGGACATTAGCTGTTGTAACAAAGGCTGATAAATCACCTGAAGGTTTGTTGGAGAAAGTAACTGCTGATGATGTTAACATTGGTTTGGGCTATGTTTGTGTGAGAAATCGCATTGGGGAGGAATCCTATGAAGAAGCTAGAAATGAAGAACAGAAGTTGTTTGAGTCTCACTCTTTTCTTTCTAAGATTGACAAATCCATTGTTGGTATTCCTGTTTTGGCTCAGAAGCTTGTTCATGTGCAAGCCATGATTATTTCAAAAACTTTGCCTGAGATAATTAAGAAGATCAATGAGAAGCTTTATAATAGTGTACATGAGTTGAAGACTTTGCCTGCCAATTTGACTTCATTGGCAGATGCTATGTCTGCTTTTCTGCATATTGTTTCTCTGTCAAGAGATTCTTTGAGAAAGATTCTTCTAATGGGAGAATTTGAAGAATACCCTGATGATAAACAAATGCATTGTACTGCTCGGTTAGTGGAGATGTTGAATTCATATGCAAGTGATCTTCAAAACTGTGCTGAAAGTGATTCTACAAAGGATTTCCTAATGGAAGAGATCGTAGTCCTTGAGGAAGCTAAGTTAATTGGTCTTCCAAATTTCATGCCAAGAACTGCTTTTCAAACATTACTTCAGAGAAAAGTGAAGGGCATTTCTCATATGCCAACTAATTTTGTTGACAATGTGTGGAGCTATTTGGAAAGGGTTGTTATCTCAGTCATGAATCGCCACTCTGCAAACTATTACCAGTTGCAGGTTGCTACTCGTAGAGCTGTGGAGCATCTTATTGCTAAGAAGAAGAGCAATTCCATTCAACATGTTATGCAAGCTGTTGATATGGAGAAGCACACGGATTACACTTGTAATCCGGAGTACTTGCAGGAATATAACAAGCTGATGTCTAATCAAGAAGCATTTTTGAAAAAAGTTTTGGATGATCGTCGATTTTCAAGTACTGTGAAGCTTGAAGGAGTTGATGACATTAAAGTTAATCATCTGATAGAGTATCCGATCAATGTGTTGAATCAGGCCTTTGACTTGAAGGCAAGATTAATTGCCTATTGGAAGATTGTGCTGAGGAGGCTCATTGATAGTATTGCTTTGGATTTGATGCTAAGCATCAATGAACTGATTAACAATGATCTGCAGAAGGAGATTTGTAATGAACTTGGTGGCAGTGTTGAGAGGCTGCTTGAGGAGTCTCCATCTATTTCTGGTAAGAGACAAAGTTTAAGCAGGAGTGTGAAAGTTCTTAGAGAAAGCAAAGAGACTGTGGCCAACATTATGGACAGGATTGGAGTCTATGGTGATAACTAG
Protein sequence

>MS.gene042014.t1

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSIAPIVSSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGKSSVLESLAAISLPRGQGICTRVPLVMRLQNHLLPQPELVLEYNGKHVLTDEANVSDAINTATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFSTCESIRMSQIVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARNEEQKLFESHSFLSKIDKSIVGIPVLAQKLVHVQAMIISKTLPEIIKKINEKLYNSVHELKTLPANLTSLADAMSAFLHIVSLSRDSLRKILLMGEFEEYPDDKQMHCTARLVEMLNSYASDLQNCAESDSTKDFLMEEIVVLEEAKLIGLPNFMPRTAFQTLLQRKVKGISHMPTNFVDNVWSYLERVVISVMNRHSANYYQLQVATRRAVEHLIAKKKSNSIQHVMQAVDMEKHTDYTCNPEYLQEYNKLMSNQEAFLKKVLDDRRFSSTVKLEGVDDIKVNHLIEYPINVLNQAFDLKARLIAYWKIVLRRLIDSIALDLMLSINELINNDLQKEICNELGGSVERLLEESPSISGKRQSLSRSVKVLRESKETVANIMDRIGVYGDN