Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044260.t1 | XP_003601451.1 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 5.20E-247 | 863.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044260.t1 | Q9SGU9 | 75.3 | 401 | 98 | 1 | 39 | 438 | 40 | 440 | 2.4e-176 | 619.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044260.t1 | G7J805 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 3.7e-247 | 863.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044260 | MS.gene029829 | PPI |
| MS.gene044260 | MS.gene75011 | PPI |
| MS.gene044260 | MS.gene24606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044260.t1 | MTR_3g080850 | 98.646 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 0.0 | 901 |
| MS.gene044260.t1 | MTR_1g077890 | 74.718 | 443 | 110 | 2 | 1 | 441 | 1 | 443 | 0.0 | 660 |
| MS.gene044260.t1 | MTR_6g012730 | 30.058 | 346 | 227 | 7 | 92 | 433 | 138 | 472 | 1.28e-41 | 154 |
| MS.gene044260.t1 | MTR_7g011230 | 29.730 | 333 | 219 | 7 | 92 | 420 | 196 | 517 | 1.33e-38 | 147 |
| MS.gene044260.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 96 | 447 | 9.38e-36 | 137 |
| MS.gene044260.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 97 | 448 | 9.70e-36 | 137 |
| MS.gene044260.t1 | MTR_6g012730 | 28.783 | 337 | 203 | 8 | 92 | 423 | 138 | 442 | 6.45e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044260.t1 | AT1G64660 | 75.124 | 402 | 99 | 1 | 39 | 439 | 40 | 441 | 0.0 | 631 |
| MS.gene044260.t1 | AT3G01120 | 34.132 | 334 | 203 | 8 | 92 | 420 | 224 | 545 | 1.28e-50 | 180 |
| MS.gene044260.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 33 | 355 | 6.69e-42 | 152 |
| MS.gene044260.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 72 | 394 | 1.45e-41 | 152 |
| MS.gene044260.t1 | AT1G33320 | 29.907 | 321 | 207 | 9 | 105 | 420 | 3 | 310 | 2.41e-36 | 136 |
| MS.gene044260.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 13 | 384 | 2.53e-35 | 135 |
| MS.gene044260.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 35 | 406 | 4.88e-35 | 134 |
| MS.gene044260.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 76 | 447 | 7.30e-35 | 135 |
| MS.gene044260.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 91 | 462 | 1.02e-34 | 135 |
| MS.gene044260.t1 | AT3G57050 | 31.613 | 310 | 175 | 12 | 46 | 341 | 91 | 377 | 1.87e-30 | 121 |
Find 126 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCTTCTAATACTCTTTA+TGG | 0.133950 | 3.3:-68509411 | MS.gene044260:CDS |
| TTGCAAAACTATGCTCATTT+TGG | 0.190448 | 3.3:-68508045 | MS.gene044260:CDS |
| GCCAATGCCCGCCATGAATT+TGG | 0.195339 | 3.3:-68509699 | MS.gene044260:CDS |
| GACAGTTCAAATGCTACCTT+TGG | 0.325926 | 3.3:+68508294 | None:intergenic |
| GCATTGGCGAGTGCGGCCTC+TGG | 0.329540 | 3.3:+68509714 | None:intergenic |
| GCGTCTTTGCCCTCAACAAC+AGG | 0.334858 | 3.3:+68509780 | None:intergenic |
| ATTTGTTGACATATCCGATT+TGG | 0.340588 | 3.3:-68509331 | MS.gene044260:CDS |
| GCTACCTTTGGGTTCATTGT+TGG | 0.369052 | 3.3:+68508306 | None:intergenic |
| GGCTGTACAATAGGCGGCCT+CGG | 0.370564 | 3.3:+68509494 | None:intergenic |
| GAGGAGGAACAGAAACTTGC+TGG | 0.376846 | 3.3:-68507946 | MS.gene044260:CDS |
| GGCTGAGATTGAGGACGGTT+GGG | 0.382101 | 3.3:+68509541 | None:intergenic |
| GGTGGTGGTGACATTATTGC+AGG | 0.382112 | 3.3:-68509087 | MS.gene044260:intron |
| ACTACCAGAGCAAGACATTA+GGG | 0.386384 | 3.3:+68507990 | None:intergenic |
| CATGCCACTGGCTGTACAAT+AGG | 0.389277 | 3.3:+68509485 | None:intergenic |
| CACCATGTTCGCCAAATTCA+TGG | 0.395995 | 3.3:+68509688 | None:intergenic |
| CATTGGCGAGTGCGGCCTCT+GGG | 0.403366 | 3.3:+68509715 | None:intergenic |
| CGGCTGAGATTGAGGACGGT+TGG | 0.412741 | 3.3:+68509540 | None:intergenic |
| GCCAAATTCATGGCGGGCAT+TGG | 0.417529 | 3.3:+68509698 | None:intergenic |
| ACTCTCCGCAAAATATTTGC+TGG | 0.420553 | 3.3:-68509612 | MS.gene044260:CDS |
| GGCAACAAAAGTTATGGTTA+TGG | 0.429995 | 3.3:-68508126 | MS.gene044260:CDS |
| TACTACCAGAGCAAGACATT+AGG | 0.431550 | 3.3:+68507989 | None:intergenic |
| CTGCTTTCTCCTGCTCGTCT+TGG | 0.446270 | 3.3:-68509150 | MS.gene044260:CDS |
| CGCCATGAATTTGGCGAACA+TGG | 0.446911 | 3.3:-68509690 | MS.gene044260:CDS |
| AAAATATTTGCTGGAGAGCT+TGG | 0.450787 | 3.3:-68509603 | MS.gene044260:CDS |
| CTTCGAGGGCCGCCATCTTA+CGG | 0.450790 | 3.3:+68509520 | None:intergenic |
| CAAATACTCCTGAGCTAGCT+AGG | 0.456437 | 3.3:-68509227 | MS.gene044260:CDS |
| ATTCTCAACTGCTTCCAAAT+CGG | 0.458070 | 3.3:+68509317 | None:intergenic |
| ATGAATTTGGCGAACATGGT+GGG | 0.464837 | 3.3:-68509686 | MS.gene044260:CDS |
| TCAAGGAGCCATGATGCTGC+TGG | 0.465864 | 3.3:-68508331 | MS.gene044260:CDS |
| AGGCGGCCTCGGTGCCTTCG+AGG | 0.465951 | 3.3:+68509505 | None:intergenic |
| TCCATAGGCAACAAAAGTTA+TGG | 0.473714 | 3.3:-68508132 | MS.gene044260:CDS |
| TGGGATTCTTTGTGTTGACA+TGG | 0.474228 | 3.3:-68508103 | MS.gene044260:CDS |
| CTCGAAAACCCTGTTGTTGA+GGG | 0.476215 | 3.3:-68509789 | MS.gene044260:CDS |
| GGCTGTGTTCTTTCATGCGA+AGG | 0.480729 | 3.3:+68508250 | None:intergenic |
| CAGCCACGGCGGACATATTG+TGG | 0.495550 | 3.3:-68509430 | MS.gene044260:CDS |
| AGAAATGCTGCAAGAGTGCA+TGG | 0.496586 | 3.3:+68509382 | None:intergenic |
| GGGATTCTTTGTGTTGACAT+GGG | 0.496704 | 3.3:-68508102 | MS.gene044260:CDS |
| GTCAGAGAGAATCCCACACT+TGG | 0.498789 | 3.3:-68508274 | MS.gene044260:CDS |
| GGACTCAATGTGATCTATCC+TGG | 0.499685 | 3.3:-68508189 | MS.gene044260:CDS |
| CCATCTTACGGCTGAGATTG+AGG | 0.506032 | 3.3:+68509532 | None:intergenic |
| CAAGGAGCCATGATGCTGCT+GGG | 0.506322 | 3.3:-68508330 | MS.gene044260:CDS |
| GTATTTGCCACATTCAAGCT+TGG | 0.509683 | 3.3:+68509243 | None:intergenic |
| CCTCAATCTCAGCCGTAAGA+TGG | 0.509888 | 3.3:-68509532 | MS.gene044260:CDS |
| GCTTCTAATACTCTTTATGG+TGG | 0.511265 | 3.3:-68509408 | MS.gene044260:CDS |
| CGTGCAATCCTAGCTAGCTC+AGG | 0.515563 | 3.3:+68509219 | None:intergenic |
| ACTGACATCCTCACCATCCC+TGG | 0.518257 | 3.3:+68507916 | None:intergenic |
| AACGCATTGATGGGAATTCA+AGG | 0.519505 | 3.3:-68508348 | MS.gene044260:CDS |
| ACAGTTCAAATGCTACCTTT+GGG | 0.519702 | 3.3:+68508295 | None:intergenic |
| CCTCGAAAACCCTGTTGTTG+AGG | 0.520765 | 3.3:-68509790 | MS.gene044260:CDS |
| GGCGGCCTCGGTGCCTTCGA+GGG | 0.521473 | 3.3:+68509506 | None:intergenic |
| CATGCTGTGGATGATCTTCA+AGG | 0.523751 | 3.3:+68508166 | None:intergenic |
| CTTCTAATACTCTTTATGGT+GGG | 0.526302 | 3.3:-68509407 | MS.gene044260:CDS |
| AGAACACAGCCATCGTGCAT+TGG | 0.527334 | 3.3:-68508238 | MS.gene044260:CDS |
| GCTGGAGAGCTTGGTCATGA+AGG | 0.528198 | 3.3:-68509594 | MS.gene044260:CDS |
| TGTTGGCCCCAGCAGCATCA+TGG | 0.530505 | 3.3:+68508323 | None:intergenic |
| GGATTCTTTGTGTTGACATG+GGG | 0.532362 | 3.3:-68508101 | MS.gene044260:CDS |
| AACAAAAGTTATGGTTATGG+TGG | 0.536628 | 3.3:-68508123 | MS.gene044260:CDS |
| GGAGCAGAAGTGGAGTCAGC+TGG | 0.536681 | 3.3:-68507875 | MS.gene044260:CDS |
| TGACTCAAAATACAGCACTT+TGG | 0.536801 | 3.3:+68509275 | None:intergenic |
| CTGTTACAGCTCTGCAGCCA+CGG | 0.538126 | 3.3:-68509444 | MS.gene044260:CDS |
| ATCTCTAAGTTTATCAGTGG+TGG | 0.542218 | 3.3:-68509105 | MS.gene044260:CDS |
| TCTAAGTTTATCAGTGGTGG+TGG | 0.543204 | 3.3:-68509102 | MS.gene044260:CDS |
| GAAACCCTAATGTCTTGCTC+TGG | 0.544821 | 3.3:-68507994 | MS.gene044260:CDS |
| CGAGCAGGAGAAAGCAGCAT+AGG | 0.546115 | 3.3:+68509156 | None:intergenic |
| ATGTTCGCCAAATTCATGGC+GGG | 0.548060 | 3.3:+68509692 | None:intergenic |
| TTGGAACATTGGAGCAGAAG+TGG | 0.548304 | 3.3:-68507885 | MS.gene044260:CDS |
| CTCTGCCACCTTCACCGTCA+TGG | 0.548584 | 3.3:-68509643 | MS.gene044260:CDS |
| CGTAAGATGGCGGCCCTCGA+AGG | 0.549334 | 3.3:-68509519 | MS.gene044260:CDS |
| AGAAAGCAGCATAGGAGCAA+AGG | 0.550769 | 3.3:+68509164 | None:intergenic |
| AGTTGGATACATTGGAACAT+TGG | 0.552093 | 3.3:-68507896 | MS.gene044260:CDS |
| AGAAATAGCGGACATGCCAC+TGG | 0.552652 | 3.3:+68509473 | None:intergenic |
| ACATCTGCACCAAGACGAGC+AGG | 0.554578 | 3.3:+68509141 | None:intergenic |
| CACAAGTAGTGAGCTGAATG+AGG | 0.555659 | 3.3:-68507965 | MS.gene044260:CDS |
| CATGACGGTGAAGGTGGCAG+AGG | 0.555789 | 3.3:+68509644 | None:intergenic |
| TGCTCGTCTTGGTGCAGATG+TGG | 0.556305 | 3.3:-68509139 | MS.gene044260:CDS |
| TGTGGATGATCTTCAAGGCC+AGG | 0.556561 | 3.3:+68508171 | None:intergenic |
| ACAAAAGTTATGGTTATGGT+GGG | 0.556650 | 3.3:-68508122 | MS.gene044260:CDS |
| TGAATTTGGCGAACATGGTG+GGG | 0.557188 | 3.3:-68509685 | MS.gene044260:CDS |
| CGTCTTTGCCCTCAACAACA+GGG | 0.558410 | 3.3:+68509781 | None:intergenic |
| AAACTTGCTGGGATTACACC+AGG | 0.558665 | 3.3:-68507934 | MS.gene044260:CDS |
| AGAATACATGGCGGATACGT+TGG | 0.562710 | 3.3:-68509844 | None:intergenic |
| AGGATGTCAGTTGGATACAT+TGG | 0.562882 | 3.3:-68507904 | MS.gene044260:CDS |
| GTTGAGAATGCAATTGTGGA+AGG | 0.566748 | 3.3:-68509303 | MS.gene044260:CDS |
| ATGGCGGGCATTGGCGAGTG+CGG | 0.568985 | 3.3:+68509707 | None:intergenic |
| CATGAATTTGGCGAACATGG+TGG | 0.571402 | 3.3:-68509687 | MS.gene044260:CDS |
| GGACGGTTGGGTTGAAATGA+CGG | 0.578007 | 3.3:+68509553 | None:intergenic |
| TCTTGCAGCATTTCTTTGTG+AGG | 0.579069 | 3.3:-68509374 | MS.gene044260:CDS |
| ATCTGGTTCCATGACGGTGA+AGG | 0.580223 | 3.3:+68509635 | None:intergenic |
| TGGGGTTAACATGTCGATTG+AGG | 0.586048 | 3.3:-68509667 | MS.gene044260:CDS |
| TGCTGGGATTACACCAGGGA+TGG | 0.593726 | 3.3:-68507929 | MS.gene044260:CDS |
| TGCAAATCCAAGCTTGAATG+TGG | 0.596227 | 3.3:-68509250 | MS.gene044260:CDS |
| GGATATGTCAACAAATGTTG+TGG | 0.599887 | 3.3:+68509338 | None:intergenic |
| TCATGCGAAGGCCCAAGTGT+GGG | 0.600196 | 3.3:+68508262 | None:intergenic |
| TGGTTCCATGACGGTGAAGG+TGG | 0.602134 | 3.3:+68509638 | None:intergenic |
| AAGGAGCCATGATGCTGCTG+GGG | 0.605331 | 3.3:-68508329 | MS.gene044260:CDS |
| GGATTACACCAGGGATGGTG+AGG | 0.605740 | 3.3:-68507924 | MS.gene044260:CDS |
| AGGAGGAACAGAAACTTGCT+GGG | 0.605841 | 3.3:-68507945 | MS.gene044260:CDS |
| GCCGCCTATTGTACAGCCAG+TGG | 0.608219 | 3.3:-68509489 | MS.gene044260:CDS |
| AGCAGTTGAGAATGCAATTG+TGG | 0.608406 | 3.3:-68509307 | MS.gene044260:CDS |
| TTCATGCGAAGGCCCAAGTG+TGG | 0.609520 | 3.3:+68508261 | None:intergenic |
| CATGAACTATTGAAATCCAT+AGG | 0.612583 | 3.3:-68508147 | MS.gene044260:CDS |
| CTTACGGCTGAGATTGAGGA+CGG | 0.623850 | 3.3:+68509536 | None:intergenic |
| GTGCATTGGAATTTGCAACC+AGG | 0.624441 | 3.3:-68508224 | MS.gene044260:CDS |
| TTGTGTTGACATGGGGACAG+TGG | 0.626253 | 3.3:-68508094 | MS.gene044260:CDS |
| GGGATGGTGAGGATGTCAGT+TGG | 0.628293 | 3.3:-68507913 | MS.gene044260:CDS |
| GAGAGTATCTGGTTCCATGA+CGG | 0.637077 | 3.3:+68509629 | None:intergenic |
| AGTATCTCTAAGTTTATCAG+TGG | 0.640242 | 3.3:-68509108 | MS.gene044260:CDS |
| GATTTCAATAGTTCATGCTG+TGG | 0.640950 | 3.3:+68508153 | None:intergenic |
| TAACAGAACTGCAGAAATAG+CGG | 0.644901 | 3.3:+68509461 | None:intergenic |
| TTGAGAATGCAATTGTGGAA+GGG | 0.645173 | 3.3:-68509302 | MS.gene044260:CDS |
| TCAGAGAGAATCCCACACTT+GGG | 0.650245 | 3.3:-68508273 | MS.gene044260:CDS |
| GGCGGCCCTCGAAGGCACCG+AGG | 0.659707 | 3.3:-68509511 | MS.gene044260:CDS |
| AAAATGACAGGAGCTGTGTG+TGG | 0.660955 | 3.3:-68508387 | MS.gene044260:intron |
| CAATCTCAGCCGTAAGATGG+CGG | 0.663207 | 3.3:-68509529 | MS.gene044260:CDS |
| GAAATGCTGCAAGAGTGCAT+GGG | 0.674218 | 3.3:+68509383 | None:intergenic |
| AAGTAGTGAGCTGAATGAGG+AGG | 0.679239 | 3.3:-68507962 | MS.gene044260:CDS |
| GGGGCCAACAATGAACCCAA+AGG | 0.683668 | 3.3:-68508310 | MS.gene044260:CDS |
| AAACTGACAAAATTCAATGG+CGG | 0.687533 | 3.3:-68509753 | MS.gene044260:CDS |
| GCCACTGGCTGTACAATAGG+CGG | 0.689799 | 3.3:+68509488 | None:intergenic |
| AGAATCTGACGTAGACCCAG+AGG | 0.698857 | 3.3:-68509730 | MS.gene044260:CDS |
| AAGCCACAATATGTCCGCCG+TGG | 0.698957 | 3.3:+68509427 | None:intergenic |
| AACTTGCTGGGATTACACCA+GGG | 0.702488 | 3.3:-68507933 | MS.gene044260:CDS |
| AAATGACAGGAGCTGTGTGT+GGG | 0.705210 | 3.3:-68508386 | MS.gene044260:intron |
| CATGTTCGCCAAATTCATGG+CGG | 0.725851 | 3.3:+68509691 | None:intergenic |
| TTACAGCTCTGCAGCCACGG+CGG | 0.748049 | 3.3:-68509441 | MS.gene044260:CDS |
| TTGCAAATTCCAATGCACGA+TGG | 0.757861 | 3.3:+68508229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAATATATTTTAAACAA+AGG | + | chr3.3:68508733-68508752 | None:intergenic | 10.0% |
| !!! | TCAAAATAACTTTTTTTTTA+AGG | + | chr3.3:68509176-68509195 | None:intergenic | 10.0% |
| !!! | AATTAATTTTAAATTGTCTC+CGG | - | chr3.3:68508871-68508890 | MS.gene044260:intron | 15.0% |
| !!! | ATATATTTTAAACAAAGGAA+AGG | + | chr3.3:68508728-68508747 | None:intergenic | 15.0% |
| !! | AAAAAACTGACAAAATTCAA+TGG | - | chr3.3:68507921-68507940 | MS.gene044260:CDS | 20.0% |
| !! | AATTCTTTAATCATAAAGAC+CGG | + | chr3.3:68508893-68508912 | None:intergenic | 20.0% |
| !! | ATAGAGTAATATTAATAACG+TGG | - | chr3.3:68509019-68509038 | MS.gene044260:intron | 20.0% |
| !! | CTTTCAAAGAAAAAAATTGT+TGG | + | chr3.3:68508762-68508781 | None:intergenic | 20.0% |
| !! | TCATAAAACTATACAATGTA+CGG | + | chr3.3:68508819-68508838 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTGTCAGTTTTT+TGG | + | chr3.3:68507922-68507941 | None:intergenic | 20.0% |
| ! | ATTCAACTATTTGCCTAATA+TGG | + | chr3.3:68508677-68508696 | None:intergenic | 25.0% |
| ! | CACTCAAACAAATATAATGT+TGG | + | chr3.3:68508793-68508812 | None:intergenic | 25.0% |
| ! | GCAAAATAGTAGATTTCTAT+TGG | - | chr3.3:68509041-68509060 | MS.gene044260:intron | 25.0% |
| !! | AGTTTGGTAATTCATAATAG+CGG | + | chr3.3:68508645-68508664 | None:intergenic | 25.0% |
| !!! | TCAAACTCACGTTTTTTTAA+AGG | + | chr3.3:68509203-68509222 | None:intergenic | 25.0% |
| AAACTGACAAAATTCAATGG+CGG | - | chr3.3:68507924-68507943 | MS.gene044260:CDS | 30.0% | |
| AACAAAAGTTATGGTTATGG+TGG | - | chr3.3:68509554-68509573 | MS.gene044260:CDS | 30.0% | |
| AATATGGCGAAACAAAAGTT+TGG | + | chr3.3:68508661-68508680 | None:intergenic | 30.0% | |
| ACAAAAGTTATGGTTATGGT+GGG | - | chr3.3:68509555-68509574 | MS.gene044260:CDS | 30.0% | |
| AGTATCTCTAAGTTTATCAG+TGG | - | chr3.3:68508569-68508588 | MS.gene044260:intron | 30.0% | |
| CATGAACTATTGAAATCCAT+AGG | - | chr3.3:68509530-68509549 | MS.gene044260:CDS | 30.0% | |
| CTTCTAATACTCTTTATGGT+GGG | - | chr3.3:68508270-68508289 | MS.gene044260:CDS | 30.0% | |
| ! | ATTTGTTGACATATCCGATT+TGG | - | chr3.3:68508346-68508365 | MS.gene044260:CDS | 30.0% |
| ! | TTGCAAAACTATGCTCATTT+TGG | - | chr3.3:68509632-68509651 | MS.gene044260:CDS | 30.0% |
| ! | TTTGAAACCTTGAAAATGAC+AGG | - | chr3.3:68509278-68509297 | MS.gene044260:CDS | 30.0% |
| !! | AACTTTTGTTTCGCCATATT+AGG | - | chr3.3:68508661-68508680 | MS.gene044260:intron | 30.0% |
| !! | GTTTTATGGCTGTTAGTTTA+GGG | - | chr3.3:68509654-68509673 | MS.gene044260:CDS | 30.0% |
| !!! | CTATGCTCATTTTGGTTTTA+TGG | - | chr3.3:68509640-68509659 | MS.gene044260:CDS | 30.0% |
| !!! | GTTGTACACTTTATTTTGAG+AGG | + | chr3.3:68509253-68509272 | None:intergenic | 30.0% |
| ACAGTTCAAATGCTACCTTT+GGG | + | chr3.3:68509385-68509404 | None:intergenic | 35.0% | |
| AGTTGGATACATTGGAACAT+TGG | - | chr3.3:68509781-68509800 | MS.gene044260:CDS | 35.0% | |
| ATCTCTAAGTTTATCAGTGG+TGG | - | chr3.3:68508572-68508591 | MS.gene044260:intron | 35.0% | |
| ATTCTCAACTGCTTCCAAAT+CGG | + | chr3.3:68508363-68508382 | None:intergenic | 35.0% | |
| GATTTCAATAGTTCATGCTG+TGG | + | chr3.3:68509527-68509546 | None:intergenic | 35.0% | |
| GCTTCTAATACTCTTTATGG+TGG | - | chr3.3:68508269-68508288 | MS.gene044260:CDS | 35.0% | |
| GGATATGTCAACAAATGTTG+TGG | + | chr3.3:68508342-68508361 | None:intergenic | 35.0% | |
| GGCAACAAAAGTTATGGTTA+TGG | - | chr3.3:68509551-68509570 | MS.gene044260:CDS | 35.0% | |
| GTGGCTTCTAATACTCTTTA+TGG | - | chr3.3:68508266-68508285 | MS.gene044260:CDS | 35.0% | |
| TAACAGAACTGCAGAAATAG+CGG | + | chr3.3:68508219-68508238 | None:intergenic | 35.0% | |
| TCCATAGGCAACAAAAGTTA+TGG | - | chr3.3:68509545-68509564 | MS.gene044260:CDS | 35.0% | |
| TGACTCAAAATACAGCACTT+TGG | + | chr3.3:68508405-68508424 | None:intergenic | 35.0% | |
| TTGAGAATGCAATTGTGGAA+GGG | - | chr3.3:68508375-68508394 | MS.gene044260:CDS | 35.0% | |
| ! | AAAATATTTGCTGGAGAGCT+TGG | - | chr3.3:68508074-68508093 | MS.gene044260:CDS | 35.0% |
| ! | ACCATAACTTTTGTTGCCTA+TGG | + | chr3.3:68509549-68509568 | None:intergenic | 35.0% |
| !! | AAGTTTTGTGAACGCATTGA+TGG | - | chr3.3:68509319-68509338 | MS.gene044260:CDS | 35.0% |
| !! | AGTTTTGTGAACGCATTGAT+GGG | - | chr3.3:68509320-68509339 | MS.gene044260:CDS | 35.0% |
| !! | GGTTTTATGGCTGTTAGTTT+AGG | - | chr3.3:68509653-68509672 | MS.gene044260:CDS | 35.0% |
| !!! | AATATTTTGCGGAGAGTATC+TGG | + | chr3.3:68508062-68508081 | None:intergenic | 35.0% |
| ACTACCAGAGCAAGACATTA+GGG | + | chr3.3:68509690-68509709 | None:intergenic | 40.0% | |
| ACTCTCCGCAAAATATTTGC+TGG | - | chr3.3:68508065-68508084 | MS.gene044260:CDS | 40.0% | |
| AGCAGTTGAGAATGCAATTG+TGG | - | chr3.3:68508370-68508389 | MS.gene044260:CDS | 40.0% | |
| AGCGGTCACAATTATGTGAA+AGG | + | chr3.3:68508627-68508646 | None:intergenic | 40.0% | |
| AGGATGTCAGTTGGATACAT+TGG | - | chr3.3:68509773-68509792 | MS.gene044260:CDS | 40.0% | |
| ATGAATTTGGCGAACATGGT+GGG | - | chr3.3:68507991-68508010 | MS.gene044260:CDS | 40.0% | |
| GACAGTTCAAATGCTACCTT+TGG | + | chr3.3:68509386-68509405 | None:intergenic | 40.0% | |
| GCAACCAGGCTCAAAAAATT+AGG | - | chr3.3:68509467-68509486 | MS.gene044260:CDS | 40.0% | |
| GTATTTGCCACATTCAAGCT+TGG | + | chr3.3:68508437-68508456 | None:intergenic | 40.0% | |
| GTTGAGAATGCAATTGTGGA+AGG | - | chr3.3:68508374-68508393 | MS.gene044260:CDS | 40.0% | |
| TACTACCAGAGCAAGACATT+AGG | + | chr3.3:68509691-68509710 | None:intergenic | 40.0% | |
| TCTAAGTTTATCAGTGGTGG+TGG | - | chr3.3:68508575-68508594 | MS.gene044260:intron | 40.0% | |
| TCTTGCAGCATTTCTTTGTG+AGG | - | chr3.3:68508303-68508322 | MS.gene044260:CDS | 40.0% | |
| TGCAAATCCAAGCTTGAATG+TGG | - | chr3.3:68508427-68508446 | MS.gene044260:intron | 40.0% | |
| TTGCAAATTCCAATGCACGA+TGG | + | chr3.3:68509451-68509470 | None:intergenic | 40.0% | |
| ! | AACGCATTGATGGGAATTCA+AGG | - | chr3.3:68509329-68509348 | MS.gene044260:CDS | 40.0% |
| ! | GCTCTCCAGCAAATATTTTG+CGG | + | chr3.3:68508073-68508092 | None:intergenic | 40.0% |
| ! | GGATTCTTTGTGTTGACATG+GGG | - | chr3.3:68509576-68509595 | MS.gene044260:CDS | 40.0% |
| ! | GGGATTCTTTGTGTTGACAT+GGG | - | chr3.3:68509575-68509594 | MS.gene044260:CDS | 40.0% |
| ! | TGGGATTCTTTGTGTTGACA+TGG | - | chr3.3:68509574-68509593 | MS.gene044260:CDS | 40.0% |
| !!! | GAGTCCTAATTTTTTGAGCC+TGG | + | chr3.3:68509474-68509493 | None:intergenic | 40.0% |
| AAAATGACAGGAGCTGTGTG+TGG | - | chr3.3:68509290-68509309 | MS.gene044260:CDS | 45.0% | |
| AAATGACAGGAGCTGTGTGT+GGG | - | chr3.3:68509291-68509310 | MS.gene044260:CDS | 45.0% | |
| AAGTAGTGAGCTGAATGAGG+AGG | - | chr3.3:68509715-68509734 | MS.gene044260:CDS | 45.0% | |
| ACGCAAAAAAGGAGTGACTG+TGG | - | chr3.3:68508478-68508497 | MS.gene044260:intron | 45.0% | |
| AGAAAGCAGCATAGGAGCAA+AGG | + | chr3.3:68508516-68508535 | None:intergenic | 45.0% | |
| ATGTTCGCCAAATTCATGGC+GGG | + | chr3.3:68507988-68508007 | None:intergenic | 45.0% | |
| CAAAAAAGGAGTGACTGTGG+TGG | - | chr3.3:68508481-68508500 | MS.gene044260:intron | 45.0% | |
| CAAATACTCCTGAGCTAGCT+AGG | - | chr3.3:68508450-68508469 | MS.gene044260:intron | 45.0% | |
| CACAAGTAGTGAGCTGAATG+AGG | - | chr3.3:68509712-68509731 | MS.gene044260:CDS | 45.0% | |
| CACCATGTTCGCCAAATTCA+TGG | + | chr3.3:68507992-68508011 | None:intergenic | 45.0% | |
| CATGAATTTGGCGAACATGG+TGG | - | chr3.3:68507990-68508009 | MS.gene044260:CDS | 45.0% | |
| CATGCTGTGGATGATCTTCA+AGG | + | chr3.3:68509514-68509533 | None:intergenic | 45.0% | |
| CATGTTCGCCAAATTCATGG+CGG | + | chr3.3:68507989-68508008 | None:intergenic | 45.0% | |
| CTCGAAAACCCTGTTGTTGA+GGG | - | chr3.3:68507888-68507907 | MS.gene044260:CDS | 45.0% | |
| GAAACCCTAATGTCTTGCTC+TGG | - | chr3.3:68509683-68509702 | MS.gene044260:CDS | 45.0% | |
| GCTAGGATTGCACGCAAAAA+AGG | - | chr3.3:68508467-68508486 | MS.gene044260:intron | 45.0% | |
| GGACTCAATGTGATCTATCC+TGG | - | chr3.3:68509488-68509507 | MS.gene044260:CDS | 45.0% | |
| GTGCATTGGAATTTGCAACC+AGG | - | chr3.3:68509453-68509472 | MS.gene044260:CDS | 45.0% | |
| TCAGAGAGAATCCCACACTT+GGG | - | chr3.3:68509404-68509423 | MS.gene044260:CDS | 45.0% | |
| TGAATTTGGCGAACATGGTG+GGG | - | chr3.3:68507992-68508011 | MS.gene044260:CDS | 45.0% | |
| TTGGAACATTGGAGCAGAAG+TGG | - | chr3.3:68509792-68509811 | MS.gene044260:CDS | 45.0% | |
| ! | AGAAATGCTGCAAGAGTGCA+TGG | + | chr3.3:68508298-68508317 | None:intergenic | 45.0% |
| ! | AGGAGGAACAGAAACTTGCT+GGG | - | chr3.3:68509732-68509751 | MS.gene044260:CDS | 45.0% |
| ! | GAAATGCTGCAAGAGTGCAT+GGG | + | chr3.3:68508297-68508316 | None:intergenic | 45.0% |
| ! | GCTACCTTTGGGTTCATTGT+TGG | + | chr3.3:68509374-68509393 | None:intergenic | 45.0% |
| ! | TGGGGTTAACATGTCGATTG+AGG | - | chr3.3:68508010-68508029 | MS.gene044260:CDS | 45.0% |
| !! | AAACTTGCTGGGATTACACC+AGG | - | chr3.3:68509743-68509762 | MS.gene044260:CDS | 45.0% |
| !! | AACTTGCTGGGATTACACCA+GGG | - | chr3.3:68509744-68509763 | MS.gene044260:CDS | 45.0% |
| !! | GAGAGTATCTGGTTCCATGA+CGG | + | chr3.3:68508051-68508070 | None:intergenic | 45.0% |
| !!! | CACAGCTCCTGTCATTTTCA+AGG | + | chr3.3:68509288-68509307 | None:intergenic | 45.0% |
| !! | TTAAAATTAATTATATGATT+TGG | + | chr3.3:68508863-68508882 | None:intergenic | 5.0% |
| AGAACACAGCCATCGTGCAT+TGG | - | chr3.3:68509439-68509458 | MS.gene044260:CDS | 50.0% | |
| AGAATCTGACGTAGACCCAG+AGG | - | chr3.3:68507947-68507966 | MS.gene044260:CDS | 50.0% | |
| CAATCTCAGCCGTAAGATGG+CGG | - | chr3.3:68508148-68508167 | MS.gene044260:CDS | 50.0% | |
| CCATCTTACGGCTGAGATTG+AGG | + | chr3.3:68508148-68508167 | None:intergenic | 50.0% | |
| CCTCAATCTCAGCCGTAAGA+TGG | - | chr3.3:68508145-68508164 | MS.gene044260:CDS | 50.0% | |
| CCTCGAAAACCCTGTTGTTG+AGG | - | chr3.3:68507887-68507906 | MS.gene044260:CDS | 50.0% | |
| CGCCATGAATTTGGCGAACA+TGG | - | chr3.3:68507987-68508006 | MS.gene044260:CDS | 50.0% | |
| CGTCTTTGCCCTCAACAACA+GGG | + | chr3.3:68507899-68507918 | None:intergenic | 50.0% | |
| CTTACGGCTGAGATTGAGGA+CGG | + | chr3.3:68508144-68508163 | None:intergenic | 50.0% | |
| GAGGAGGAACAGAAACTTGC+TGG | - | chr3.3:68509731-68509750 | MS.gene044260:CDS | 50.0% | |
| GGCTGTGTTCTTTCATGCGA+AGG | + | chr3.3:68509430-68509449 | None:intergenic | 50.0% | |
| GTCAGAGAGAATCCCACACT+TGG | - | chr3.3:68509403-68509422 | MS.gene044260:CDS | 50.0% | |
| TGTGGATGATCTTCAAGGCC+AGG | + | chr3.3:68509509-68509528 | None:intergenic | 50.0% | |
| ! | ATCTGGTTCCATGACGGTGA+AGG | + | chr3.3:68508045-68508064 | None:intergenic | 50.0% |
| ! | CATGCCACTGGCTGTACAAT+AGG | + | chr3.3:68508195-68508214 | None:intergenic | 50.0% |
| ! | CCTCAACAACAGGGTTTTCG+AGG | + | chr3.3:68507890-68507909 | None:intergenic | 50.0% |
| ! | GGTGGTGGTGACATTATTGC+AGG | - | chr3.3:68508590-68508609 | MS.gene044260:intron | 50.0% |
| ! | TTGTGTTGACATGGGGACAG+TGG | - | chr3.3:68509583-68509602 | MS.gene044260:CDS | 50.0% |
| !! | AGAAATAGCGGACATGCCAC+TGG | + | chr3.3:68508207-68508226 | None:intergenic | 50.0% |
| !! | GGACGGTTGGGTTGAAATGA+CGG | + | chr3.3:68508127-68508146 | None:intergenic | 50.0% |
| AAGCCACAATATGTCCGCCG+TGG | + | chr3.3:68508253-68508272 | None:intergenic | 55.0% | |
| AAGGAGCCATGATGCTGCTG+GGG | - | chr3.3:68509348-68509367 | MS.gene044260:CDS | 55.0% | |
| ACATCTGCACCAAGACGAGC+AGG | + | chr3.3:68508539-68508558 | None:intergenic | 55.0% | |
| ACTGACATCCTCACCATCCC+TGG | + | chr3.3:68509764-68509783 | None:intergenic | 55.0% | |
| CAAGGAGCCATGATGCTGCT+GGG | - | chr3.3:68509347-68509366 | MS.gene044260:CDS | 55.0% | |
| CGAGCAGGAGAAAGCAGCAT+AGG | + | chr3.3:68508524-68508543 | None:intergenic | 55.0% | |
| CGTGCAATCCTAGCTAGCTC+AGG | + | chr3.3:68508461-68508480 | None:intergenic | 55.0% | |
| CTGCTTTCTCCTGCTCGTCT+TGG | - | chr3.3:68508527-68508546 | MS.gene044260:intron | 55.0% | |
| CTGTTACAGCTCTGCAGCCA+CGG | - | chr3.3:68508233-68508252 | MS.gene044260:CDS | 55.0% | |
| GCCAATGCCCGCCATGAATT+TGG | - | chr3.3:68507978-68507997 | MS.gene044260:CDS | 55.0% | |
| GCGTCTTTGCCCTCAACAAC+AGG | + | chr3.3:68507900-68507919 | None:intergenic | 55.0% | |
| GCTGGAGAGCTTGGTCATGA+AGG | - | chr3.3:68508083-68508102 | MS.gene044260:CDS | 55.0% | |
| GGATTACACCAGGGATGGTG+AGG | - | chr3.3:68509753-68509772 | MS.gene044260:CDS | 55.0% | |
| GGCTGAGATTGAGGACGGTT+GGG | + | chr3.3:68508139-68508158 | None:intergenic | 55.0% | |
| GGGATGGTGAGGATGTCAGT+TGG | - | chr3.3:68509764-68509783 | MS.gene044260:CDS | 55.0% | |
| GGGGCCAACAATGAACCCAA+AGG | - | chr3.3:68509367-68509386 | MS.gene044260:CDS | 55.0% | |
| TCAAGGAGCCATGATGCTGC+TGG | - | chr3.3:68509346-68509365 | MS.gene044260:CDS | 55.0% | |
| TCATGCGAAGGCCCAAGTGT+GGG | + | chr3.3:68509418-68509437 | None:intergenic | 55.0% | |
| TGCTGGGATTACACCAGGGA+TGG | - | chr3.3:68509748-68509767 | MS.gene044260:CDS | 55.0% | |
| TGGTTCCATGACGGTGAAGG+TGG | + | chr3.3:68508042-68508061 | None:intergenic | 55.0% | |
| TTCATGCGAAGGCCCAAGTG+TGG | + | chr3.3:68509419-68509438 | None:intergenic | 55.0% | |
| ! | GCCACTGGCTGTACAATAGG+CGG | + | chr3.3:68508192-68508211 | None:intergenic | 55.0% |
| ! | TGCTCGTCTTGGTGCAGATG+TGG | - | chr3.3:68508538-68508557 | MS.gene044260:intron | 55.0% |
| !! | GCCAAATTCATGGCGGGCAT+TGG | + | chr3.3:68507982-68508001 | None:intergenic | 55.0% |
| CAGCCACGGCGGACATATTG+TGG | - | chr3.3:68508247-68508266 | MS.gene044260:CDS | 60.0% | |
| CATGACGGTGAAGGTGGCAG+AGG | + | chr3.3:68508036-68508055 | None:intergenic | 60.0% | |
| CGGCTGAGATTGAGGACGGT+TGG | + | chr3.3:68508140-68508159 | None:intergenic | 60.0% | |
| CTCTGCCACCTTCACCGTCA+TGG | - | chr3.3:68508034-68508053 | MS.gene044260:CDS | 60.0% | |
| CTTCGAGGGCCGCCATCTTA+CGG | + | chr3.3:68508160-68508179 | None:intergenic | 60.0% | |
| GCCGCCTATTGTACAGCCAG+TGG | - | chr3.3:68508188-68508207 | MS.gene044260:CDS | 60.0% | |
| GGAGCAGAAGTGGAGTCAGC+TGG | - | chr3.3:68509802-68509821 | MS.gene044260:CDS | 60.0% | |
| GGCTGTACAATAGGCGGCCT+CGG | + | chr3.3:68508186-68508205 | None:intergenic | 60.0% | |
| TGTTGGCCCCAGCAGCATCA+TGG | + | chr3.3:68509357-68509376 | None:intergenic | 60.0% | |
| TTACAGCTCTGCAGCCACGG+CGG | - | chr3.3:68508236-68508255 | MS.gene044260:CDS | 60.0% | |
| CATTGGCGAGTGCGGCCTCT+GGG | + | chr3.3:68507965-68507984 | None:intergenic | 65.0% | |
| ! | CGTAAGATGGCGGCCCTCGA+AGG | - | chr3.3:68508158-68508177 | MS.gene044260:CDS | 65.0% |
| !! | ATGGCGGGCATTGGCGAGTG+CGG | + | chr3.3:68507973-68507992 | None:intergenic | 65.0% |
| ! | GCATTGGCGAGTGCGGCCTC+TGG | + | chr3.3:68507966-68507985 | None:intergenic | 70.0% |
| !! | AGGCGGCCTCGGTGCCTTCG+AGG | + | chr3.3:68508175-68508194 | None:intergenic | 75.0% |
| !! | GGCGGCCTCGGTGCCTTCGA+GGG | + | chr3.3:68508174-68508193 | None:intergenic | 75.0% |
| !!! | GGCGGCCCTCGAAGGCACCG+AGG | - | chr3.3:68508166-68508185 | MS.gene044260:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 68507840 | 68509859 | 68507840 | ID=MS.gene044260 |
| chr3.3 | mRNA | 68507840 | 68509859 | 68507840 | ID=MS.gene044260.t1;Parent=MS.gene044260 |
| chr3.3 | exon | 68509088 | 68509859 | 68509088 | ID=MS.gene044260.t1.exon1;Parent=MS.gene044260.t1 |
| chr3.3 | CDS | 68509088 | 68509859 | 68509088 | ID=cds.MS.gene044260.t1;Parent=MS.gene044260.t1 |
| chr3.3 | exon | 68507840 | 68508399 | 68507840 | ID=MS.gene044260.t1.exon2;Parent=MS.gene044260.t1 |
| chr3.3 | CDS | 68507840 | 68508399 | 68507840 | ID=cds.MS.gene044260.t1;Parent=MS.gene044260.t1 |
| Gene Sequence |
| Protein sequence |
