Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044627.t1 | RHN65795.1 | 85.9 | 389 | 52 | 2 | 1 | 387 | 54 | 441 | 3.10E-179 | 637.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044627.t1 | Q9S7T8 | 53.3 | 390 | 177 | 3 | 1 | 385 | 1 | 390 | 3.5e-115 | 416.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044627.t1 | G7IW05 | 85.9 | 389 | 52 | 2 | 1 | 387 | 1 | 388 | 2.2e-179 | 637.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031697 | MS.gene044627 | PPI |
| MS.gene044627 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene044627 | PPI |
| MS.gene006610 | MS.gene044627 | PPI |
| MS.gene044627 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044627.t1 | MTR_3g018740 | 85.861 | 389 | 52 | 2 | 1 | 387 | 1 | 388 | 0.0 | 659 |
| MS.gene044627.t1 | MTR_3g101010 | 72.938 | 388 | 101 | 2 | 1 | 385 | 1 | 387 | 0.0 | 549 |
| MS.gene044627.t1 | MTR_4g045707 | 69.713 | 383 | 114 | 2 | 4 | 385 | 5 | 386 | 0.0 | 531 |
| MS.gene044627.t1 | MTR_2g045980 | 70.229 | 393 | 106 | 5 | 1 | 387 | 1 | 388 | 0.0 | 525 |
| MS.gene044627.t1 | MTR_2g046030 | 68.957 | 393 | 111 | 5 | 1 | 387 | 1 | 388 | 0.0 | 522 |
| MS.gene044627.t1 | MTR_8g027395 | 68.653 | 386 | 113 | 3 | 3 | 385 | 15 | 395 | 0.0 | 520 |
| MS.gene044627.t1 | MTR_3g048000 | 66.667 | 381 | 108 | 3 | 6 | 385 | 28 | 390 | 0.0 | 509 |
| MS.gene044627.t1 | MTR_4g088525 | 69.061 | 362 | 110 | 2 | 24 | 385 | 8 | 367 | 1.02e-176 | 496 |
| MS.gene044627.t1 | MTR_3g101030 | 65.743 | 397 | 112 | 5 | 10 | 385 | 34 | 427 | 1.09e-176 | 499 |
| MS.gene044627.t1 | MTR_8g027420 | 66.839 | 386 | 109 | 4 | 3 | 385 | 4 | 373 | 3.56e-176 | 495 |
| MS.gene044627.t1 | MTR_3g101180 | 65.316 | 395 | 121 | 7 | 5 | 385 | 6 | 398 | 5.02e-175 | 493 |
| MS.gene044627.t1 | MTR_8g461160 | 66.667 | 390 | 122 | 4 | 5 | 387 | 6 | 394 | 5.31e-174 | 491 |
| MS.gene044627.t1 | MTR_4g088535 | 67.725 | 378 | 104 | 3 | 5 | 382 | 7 | 366 | 3.37e-173 | 488 |
| MS.gene044627.t1 | MTR_7g451890 | 62.982 | 389 | 136 | 3 | 5 | 386 | 14 | 401 | 8.06e-170 | 480 |
| MS.gene044627.t1 | MTR_7g047780 | 63.496 | 389 | 134 | 4 | 5 | 386 | 14 | 401 | 3.00e-168 | 476 |
| MS.gene044627.t1 | MTR_3g101130 | 62.887 | 388 | 133 | 4 | 4 | 385 | 5 | 387 | 1.37e-167 | 474 |
| MS.gene044627.t1 | MTR_7g050750 | 61.893 | 391 | 141 | 3 | 3 | 386 | 6 | 395 | 5.30e-167 | 473 |
| MS.gene044627.t1 | MTR_7g050810 | 61.954 | 389 | 140 | 3 | 5 | 386 | 16 | 403 | 7.70e-165 | 468 |
| MS.gene044627.t1 | MTR_3g101050 | 63.472 | 386 | 112 | 6 | 8 | 385 | 32 | 396 | 6.93e-158 | 450 |
| MS.gene044627.t1 | MTR_3g015620 | 61.440 | 389 | 118 | 4 | 5 | 386 | 16 | 379 | 1.73e-155 | 443 |
| MS.gene044627.t1 | MTR_3g018747 | 80.843 | 261 | 34 | 2 | 129 | 387 | 9 | 255 | 7.95e-146 | 414 |
| MS.gene044627.t1 | MTR_3g102920 | 57.474 | 388 | 123 | 6 | 4 | 385 | 57 | 408 | 1.68e-139 | 404 |
| MS.gene044627.t1 | MTR_3g101190 | 56.883 | 385 | 91 | 6 | 1 | 385 | 1 | 310 | 2.84e-134 | 387 |
| MS.gene044627.t1 | MTR_3g101200 | 55.220 | 364 | 132 | 6 | 27 | 385 | 53 | 390 | 3.08e-123 | 362 |
| MS.gene044627.t1 | MTR_3g100995 | 66.016 | 256 | 82 | 2 | 133 | 386 | 11 | 263 | 2.31e-118 | 344 |
| MS.gene044627.t1 | MTR_3g100010 | 57.051 | 312 | 86 | 2 | 28 | 306 | 40 | 336 | 4.92e-114 | 336 |
| MS.gene044627.t1 | MTR_7g050830 | 56.369 | 314 | 104 | 3 | 5 | 296 | 16 | 318 | 4.30e-112 | 331 |
| MS.gene044627.t1 | MTR_3g015760 | 60.284 | 282 | 102 | 4 | 110 | 386 | 4 | 280 | 2.93e-106 | 314 |
| MS.gene044627.t1 | MTR_3g111160 | 70.320 | 219 | 61 | 3 | 170 | 385 | 1 | 218 | 8.52e-102 | 300 |
| MS.gene044627.t1 | MTR_3g114310 | 42.748 | 393 | 206 | 10 | 6 | 384 | 20 | 407 | 2.40e-89 | 276 |
| MS.gene044627.t1 | MTR_3g100520 | 63.594 | 217 | 68 | 3 | 170 | 385 | 1 | 207 | 4.83e-89 | 268 |
| MS.gene044627.t1 | MTR_2g046410 | 66.346 | 208 | 62 | 4 | 186 | 387 | 144 | 349 | 1.95e-86 | 266 |
| MS.gene044627.t1 | MTR_3g101110 | 54.440 | 259 | 84 | 4 | 109 | 361 | 50 | 280 | 4.48e-85 | 260 |
| MS.gene044627.t1 | MTR_3g099970 | 63.054 | 203 | 57 | 3 | 123 | 325 | 14 | 198 | 9.67e-82 | 248 |
| MS.gene044627.t1 | MTR_3g111150 | 63.842 | 177 | 40 | 2 | 7 | 183 | 1 | 153 | 4.98e-68 | 212 |
| MS.gene044627.t1 | MTR_3g101020 | 54.301 | 186 | 56 | 2 | 203 | 386 | 1 | 159 | 1.05e-58 | 188 |
| MS.gene044627.t1 | MTR_3g102870 | 59.259 | 162 | 62 | 2 | 192 | 350 | 1 | 161 | 1.36e-58 | 188 |
| MS.gene044627.t1 | MTR_3g101150 | 60.127 | 158 | 55 | 3 | 235 | 385 | 1 | 157 | 8.31e-57 | 183 |
| MS.gene044627.t1 | MTR_3g100990 | 61.688 | 154 | 58 | 1 | 1 | 154 | 1 | 153 | 4.12e-53 | 184 |
| MS.gene044627.t1 | MTR_4g093550 | 66.667 | 87 | 29 | 0 | 2 | 88 | 3 | 89 | 5.68e-32 | 116 |
| MS.gene044627.t1 | MTR_6g046890 | 69.863 | 73 | 22 | 0 | 13 | 85 | 7 | 79 | 2.38e-25 | 100 |
| MS.gene044627.t1 | MTR_3g101140 | 56.757 | 74 | 27 | 2 | 316 | 385 | 42 | 114 | 5.30e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044627.t1 | AT1G47710 | 53.333 | 390 | 177 | 3 | 1 | 385 | 1 | 390 | 5.45e-149 | 427 |
| MS.gene044627.t1 | AT1G47710 | 53.333 | 390 | 177 | 3 | 1 | 385 | 28 | 417 | 3.01e-148 | 426 |
| MS.gene044627.t1 | AT2G25240 | 49.742 | 388 | 185 | 5 | 1 | 384 | 1 | 382 | 6.97e-127 | 370 |
| MS.gene044627.t1 | AT3G45220 | 48.601 | 393 | 190 | 5 | 1 | 384 | 1 | 390 | 4.02e-125 | 366 |
| MS.gene044627.t1 | AT2G26390 | 49.497 | 398 | 175 | 7 | 1 | 384 | 1 | 386 | 2.91e-124 | 364 |
| MS.gene044627.t1 | AT1G64030 | 43.511 | 393 | 191 | 5 | 1 | 384 | 1 | 371 | 3.95e-104 | 313 |
| MS.gene044627.t1 | AT2G14540 | 44.103 | 390 | 187 | 6 | 3 | 384 | 31 | 397 | 1.80e-103 | 311 |
| MS.gene044627.t1 | AT1G62170 | 44.293 | 368 | 170 | 5 | 27 | 384 | 89 | 431 | 1.06e-101 | 308 |
| MS.gene044627.t1 | AT2G35580 | 42.748 | 393 | 180 | 9 | 1 | 384 | 15 | 371 | 3.18e-98 | 297 |
| MS.gene044627.t1 | AT1G62170 | 40.648 | 401 | 170 | 6 | 27 | 384 | 89 | 464 | 1.08e-94 | 291 |
| MS.gene044627.t1 | AT1G64010 | 45.662 | 219 | 91 | 5 | 170 | 384 | 1 | 195 | 1.58e-59 | 192 |
| MS.gene044627.t1 | AT1G64010 | 44.118 | 204 | 86 | 5 | 185 | 384 | 2 | 181 | 2.06e-51 | 170 |
| MS.gene044627.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 126 | 241 | 5 | 120 | 6.06e-36 | 128 |
| MS.gene044627.t1 | AT1G62160 | 38.889 | 198 | 95 | 6 | 192 | 384 | 42 | 218 | 4.24e-34 | 126 |
| MS.gene044627.t1 | AT1G51330 | 58.065 | 93 | 39 | 0 | 130 | 222 | 32 | 124 | 5.65e-28 | 109 |
| MS.gene044627.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 9.31e-14 | 67.8 |
Find 69 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.1:+11225440 | MS.gene044627:CDS |
| TAACTAAAGAAGTGAATTTA+TGG | 0.195683 | 3.1:+11225339 | MS.gene044627:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.1:-11225608 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11225382 | None:intergenic |
| GTTAAGATGATCGGTGGATT+TGG | 0.325362 | 3.1:-11223108 | None:intergenic |
| TCTCCTTTGTCAATGGTGTA+TGG | 0.329536 | 3.1:+11223195 | MS.gene044627:CDS |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3.1:-11225659 | None:intergenic |
| TTCTAATTACAAGGCCACTA+TGG | 0.349818 | 3.1:+11223265 | MS.gene044627:CDS |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.1:+11226055 | MS.gene044627:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.1:+11225803 | MS.gene044627:CDS |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3.1:+11225653 | MS.gene044627:CDS |
| ACTTGTTTCTGTCGTGCTCT+CGG | 0.406977 | 3.1:+11223145 | MS.gene044627:CDS |
| GAAGGAAGATTGAAGAGAAA+GGG | 0.410651 | 3.1:-11223228 | None:intergenic |
| TGAAGGAAGATTGAAGAGAA+AGG | 0.414037 | 3.1:-11223229 | None:intergenic |
| AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.1:-11223246 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.1:+11225796 | MS.gene044627:CDS |
| CTCCTTTGTCAATGGTGTAT+GGG | 0.438426 | 3.1:+11223196 | MS.gene044627:CDS |
| GTCAGCATTGGTTGATGAGT+TGG | 0.440539 | 3.1:+11225679 | MS.gene044627:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.1:-11225404 | None:intergenic |
| AACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 3.1:+11225340 | MS.gene044627:CDS |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.459047 | 3.1:+11225863 | MS.gene044627:CDS |
| CCTCGACTCTCCTTTGTCAA+TGG | 0.460604 | 3.1:+11223188 | MS.gene044627:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.1:+11225599 | MS.gene044627:CDS |
| AACAACTTCTCGACTTCCTC+CGG | 0.462876 | 3.1:+11223084 | MS.gene044627:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.1:+11225923 | MS.gene044627:CDS |
| CTCTCGGACGCTGCTCCCAC+AGG | 0.463738 | 3.1:+11223161 | MS.gene044627:CDS |
| AGACTATAGTGCAGTAAGTC+AGG | 0.468605 | 3.1:-11225710 | None:intergenic |
| TAGAGAAACGTTCGTTTGAT+CGG | 0.469851 | 3.1:-11222946 | None:intergenic |
| CATCTCCTCGCTAGTCATGA+AGG | 0.477758 | 3.1:-11225543 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.1:-11226025 | None:intergenic |
| AAGCTCAGTTTGAATACCCT+TGG | 0.484876 | 3.1:-11225984 | None:intergenic |
| GAAATCAACAAAAGCCATAG+TGG | 0.490033 | 3.1:-11223279 | None:intergenic |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.1:-11225426 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.1:+11226037 | MS.gene044627:CDS |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.1:+11223050 | MS.gene044627:CDS |
| GTACTAAGCATCATCGCTGC+TGG | 0.512015 | 3.1:+11223041 | MS.gene044627:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.1:+11225447 | MS.gene044627:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.1:-11225514 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.1:-11226024 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.1:+11223049 | MS.gene044627:CDS |
| TTTGATCGGTGATTGATTCA+CGG | 0.518272 | 3.1:-11222932 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.1:-11225836 | None:intergenic |
| TGCTGCAATATGTTGTTCCA+AGG | 0.525097 | 3.1:+11225967 | MS.gene044627:CDS |
| TCGAGAAGTTGTTGTTGTGT+TGG | 0.526642 | 3.1:-11223074 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 3.1:-11225737 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.1:-11226062 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.1:+11225517 | MS.gene044627:CDS |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 3.1:+11225734 | MS.gene044627:CDS |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.1:-11226091 | None:intergenic |
| GATGATCGGTGGATTTGGAC+CGG | 0.546130 | 3.1:-11223103 | None:intergenic |
| AATCGTGTCTTCTAATTACA+AGG | 0.552219 | 3.1:+11223256 | MS.gene044627:CDS |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.1:-11225892 | None:intergenic |
| AGCGAGACAGTTAAGATGAT+CGG | 0.565856 | 3.1:-11223117 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.1:-11225401 | None:intergenic |
| TCGGACGCTGCTCCCACAGG+TGG | 0.573945 | 3.1:+11223164 | MS.gene044627:CDS |
| GCTGCAATATGTTGTTCCAA+GGG | 0.578130 | 3.1:+11225968 | MS.gene044627:CDS |
| ACAACATATTGCAGCACTAA+CGG | 0.581830 | 3.1:-11225960 | None:intergenic |
| ATCTCCTCGCTAGTCATGAA+GGG | 0.612833 | 3.1:-11225542 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.1:+11225808 | MS.gene044627:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11223176 | None:intergenic |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3.1:+11225667 | MS.gene044627:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.1:-11226021 | None:intergenic |
| GATCGGTGGATTTGGACCGG+AGG | 0.644979 | 3.1:-11223100 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11223177 | None:intergenic |
| AACCCATACACCATTGACAA+AGG | 0.645992 | 3.1:-11223198 | None:intergenic |
| GGTTCCCTTCATGACTAGCG+AGG | 0.683605 | 3.1:+11225538 | MS.gene044627:CDS |
| AGTACAACTTGAAGAGACAG+TGG | 0.690097 | 3.1:-11223023 | None:intergenic |
| GAGACAGTTAAGATGATCGG+TGG | 0.691965 | 3.1:-11223114 | None:intergenic |
| CCATTGACAAAGGAGAGTCG+AGG | 0.747113 | 3.1:-11223188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.1:11225298-11225317 | MS.gene044627:intron | 10.0% |
| !! | ATAATATTCTAATGTAGAAA+AGG | + | chr3.1:11223896-11223915 | MS.gene044627:intron | 15.0% |
| !! | TATATTTCATCAACAATTAA+TGG | + | chr3.1:11223360-11223379 | MS.gene044627:intron | 15.0% |
| !! | TCATATAGTTATGATATATT+TGG | + | chr3.1:11223548-11223567 | MS.gene044627:intron | 15.0% |
| !!! | AATAACATTTGCTATAAATT+AGG | - | chr3.1:11223426-11223445 | None:intergenic | 15.0% |
| !!! | ATTTAAAAATCAATTAGCTT+TGG | - | chr3.1:11225292-11225311 | None:intergenic | 15.0% |
| !!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.1:11225307-11225326 | MS.gene044627:intron | 15.0% |
| !!! | TTTTCTACATTAGAATATTA+TGG | - | chr3.1:11223897-11223916 | None:intergenic | 15.0% |
| !! | AACTAAAGAAGTGAATTTAT+GGG | + | chr3.1:11225340-11225359 | MS.gene044627:CDS | 20.0% |
| !! | ACCTATAAATAGACTTATAT+GGG | + | chr3.1:11223964-11223983 | MS.gene044627:intron | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.1:11225895-11225914 | None:intergenic | 20.0% |
| !! | TAACTAAAGAAGTGAATTTA+TGG | + | chr3.1:11225339-11225358 | MS.gene044627:CDS | 20.0% |
| !! | TAGTTATGATATATTTGGAT+TGG | + | chr3.1:11223553-11223572 | MS.gene044627:intron | 20.0% |
| !! | TATCATAACTATATGATTGA+AGG | - | chr3.1:11223544-11223563 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.1:11225773-11225792 | None:intergenic | 20.0% |
| ! | AAGACCAATAACAAATATCA+TGG | + | chr3.1:11224671-11224690 | MS.gene044627:intron | 25.0% |
| ! | AATGTAGAAAAGGCAAATAA+AGG | + | chr3.1:11223906-11223925 | MS.gene044627:intron | 25.0% |
| ! | ACAAAATAAACTGTTTGTGA+AGG | - | chr3.1:11223391-11223410 | None:intergenic | 25.0% |
| ! | ACCCATATAAGTCTATTTAT+AGG | - | chr3.1:11223968-11223987 | None:intergenic | 25.0% |
| ! | ACTTATAAGTATAATGCTCT+TGG | + | chr3.1:11223483-11223502 | MS.gene044627:intron | 25.0% |
| ! | AGAATATTATGGATGTTTCT+AGG | - | chr3.1:11223886-11223905 | None:intergenic | 25.0% |
| ! | AGTTCAAACAAAAACTAAGA+AGG | + | chr3.1:11224304-11224323 | MS.gene044627:intron | 25.0% |
| ! | ATCCATTTATATTTATTGCC+TGG | - | chr3.1:11224439-11224458 | None:intergenic | 25.0% |
| ! | CACCTATAAATAGACTTATA+TGG | + | chr3.1:11223963-11223982 | MS.gene044627:intron | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.1:11226027-11226046 | None:intergenic | 25.0% |
| ! | GTTATAGAAGAACATATAGT+TGG | - | chr3.1:11224200-11224219 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:11226028-11226047 | None:intergenic | 25.0% |
| ! | TGCAATGTCAATAATATTGA+AGG | + | chr3.1:11224020-11224039 | MS.gene044627:intron | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.1:11225611-11225630 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:11225923-11225942 | MS.gene044627:CDS | 25.0% |
| !! | ATTGGTGGTATATAGTATAA+TGG | + | chr3.1:11223571-11223590 | MS.gene044627:intron | 25.0% |
| !! | GTTGATGAAATATAAAAGCA+AGG | - | chr3.1:11223354-11223373 | None:intergenic | 25.0% |
| !! | TTATGATATATTTGGATTGG+TGG | + | chr3.1:11223556-11223575 | MS.gene044627:intron | 25.0% |
| !!! | TTTTGTTGATTTCAAAACCA+AGG | + | chr3.1:11223289-11223308 | MS.gene044627:CDS | 25.0% |
| AAAAACTAAGAAGGCTATAG+AGG | + | chr3.1:11224313-11224332 | MS.gene044627:intron | 30.0% | |
| AATCGTGTCTTCTAATTACA+AGG | + | chr3.1:11223256-11223275 | MS.gene044627:CDS | 30.0% | |
| ACATCTAACTAGCCAATAAA+AGG | - | chr3.1:11223677-11223696 | None:intergenic | 30.0% | |
| AGATGGACATACATTATTGT+TGG | - | chr3.1:11225205-11225224 | None:intergenic | 30.0% | |
| AGATTGTTCCATTAATGTCT+AGG | + | chr3.1:11223849-11223868 | MS.gene044627:intron | 30.0% | |
| ATAACAAATATCATGGCAAG+AGG | + | chr3.1:11224678-11224697 | MS.gene044627:intron | 30.0% | |
| ATACCTCCAAATATACAAGA+TGG | - | chr3.1:11225222-11225241 | None:intergenic | 30.0% | |
| ATTAGTGATGAGCATATTGT+AGG | - | chr3.1:11224073-11224092 | None:intergenic | 30.0% | |
| ATTGCATCTCAAATGCTTAA+AGG | - | chr3.1:11224006-11224025 | None:intergenic | 30.0% | |
| ATTGTTGAAGATTTCTGACA+GGG | - | chr3.1:11224590-11224609 | None:intergenic | 30.0% | |
| CAACTTAACCTAGACATTAA+TGG | - | chr3.1:11223860-11223879 | None:intergenic | 30.0% | |
| CATCTAACTAGCCAATAAAA+GGG | - | chr3.1:11223676-11223695 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11225385-11225404 | None:intergenic | 30.0% | |
| GTATGTCCATCTTGTATATT+TGG | + | chr3.1:11225213-11225232 | MS.gene044627:intron | 30.0% | |
| GTCCAGGCAATAAATATAAA+TGG | + | chr3.1:11224434-11224453 | MS.gene044627:intron | 30.0% | |
| GTTTATTTCAGCACAAAGTA+GGG | + | chr3.1:11223729-11223748 | MS.gene044627:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.1:11226024-11226043 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.1:11225796-11225815 | MS.gene044627:CDS | 30.0% | |
| TGAAATATAAAAGCAAGGCA+TGG | - | chr3.1:11223349-11223368 | None:intergenic | 30.0% | |
| TGCTCTTGGAATTTATTTGA+TGG | + | chr3.1:11223497-11223516 | MS.gene044627:intron | 30.0% | |
| TGTTTATTTCAGCACAAAGT+AGG | + | chr3.1:11223728-11223747 | MS.gene044627:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | + | chr3.1:11225653-11225672 | MS.gene044627:CDS | 30.0% | |
| ! | AGTTTTCGAAATATGCATCA+AGG | + | chr3.1:11224807-11224826 | MS.gene044627:intron | 30.0% |
| ! | ATAAAAGGGTATACATGGAT+TGG | - | chr3.1:11223662-11223681 | None:intergenic | 30.0% |
| ! | ATCCATGTATACCCTTTTAT+TGG | + | chr3.1:11223662-11223681 | MS.gene044627:intron | 30.0% |
| ! | TGGTATATAGTATAATGGAG+TGG | + | chr3.1:11223576-11223595 | MS.gene044627:intron | 30.0% |
| ! | TGTGATTTTCACCTTTTGAA+TGG | + | chr3.1:11225503-11225522 | MS.gene044627:CDS | 30.0% |
| !! | CTTGCCATGATATTTGTTAT+TGG | - | chr3.1:11224678-11224697 | None:intergenic | 30.0% |
| !! | GATTGGTGTTATTGAGTAAA+AGG | - | chr3.1:11223645-11223664 | None:intergenic | 30.0% |
| AATCTACTACATGAGTGACA+AGG | + | chr3.1:11224532-11224551 | MS.gene044627:intron | 35.0% | |
| AATCTTCAACAATGTCGACA+AGG | + | chr3.1:11224597-11224616 | MS.gene044627:intron | 35.0% | |
| ACAACATATTGCAGCACTAA+CGG | - | chr3.1:11225963-11225982 | None:intergenic | 35.0% | |
| AGAAGACACGATTTCTTTGA+AGG | - | chr3.1:11223249-11223268 | None:intergenic | 35.0% | |
| CATGTAGTAGATTCTTGACA+GGG | - | chr3.1:11224525-11224544 | None:intergenic | 35.0% | |
| CATTGTTGAAGATTTCTGAC+AGG | - | chr3.1:11224591-11224610 | None:intergenic | 35.0% | |
| GAAATCAACAAAAGCCATAG+TGG | - | chr3.1:11223282-11223301 | None:intergenic | 35.0% | |
| GAAGGAAGATTGAAGAGAAA+GGG | - | chr3.1:11223231-11223250 | None:intergenic | 35.0% | |
| GAGGAGATACATTAGTGATA+TGG | - | chr3.1:11224051-11224070 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.1:11225440-11225459 | MS.gene044627:CDS | 35.0% | |
| GGAGTGGAATGAAATGATTT+GGG | + | chr3.1:11223592-11223611 | MS.gene044627:intron | 35.0% | |
| GTCTATGACTCAAACACAAA+AGG | + | chr3.1:11224248-11224267 | MS.gene044627:intron | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.1:11225407-11225426 | None:intergenic | 35.0% | |
| TAGAGAAACGTTCGTTTGAT+CGG | - | chr3.1:11222949-11222968 | None:intergenic | 35.0% | |
| TCATGTAGTAGATTCTTGAC+AGG | - | chr3.1:11224526-11224545 | None:intergenic | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.1:11225803-11225822 | MS.gene044627:CDS | 35.0% | |
| TGAAGGAAGATTGAAGAGAA+AGG | - | chr3.1:11223232-11223251 | None:intergenic | 35.0% | |
| TGGAGTGGAATGAAATGATT+TGG | + | chr3.1:11223591-11223610 | MS.gene044627:intron | 35.0% | |
| TGTCCATCTTGTATATTTGG+AGG | + | chr3.1:11225216-11225235 | MS.gene044627:intron | 35.0% | |
| TTCTAATTACAAGGCCACTA+TGG | + | chr3.1:11223265-11223284 | MS.gene044627:CDS | 35.0% | |
| TTGGAAAATATAGAGCGTGA+GGG | - | chr3.1:11224116-11224135 | None:intergenic | 35.0% | |
| TTTCGAAATATGCATCAAGG+AGG | + | chr3.1:11224810-11224829 | MS.gene044627:intron | 35.0% | |
| ! | AGCCAATAAAAGGGTATACA+TGG | - | chr3.1:11223667-11223686 | None:intergenic | 35.0% |
| ! | CTTAACTTGAGTACAAGCAT+AGG | + | chr3.1:11224476-11224495 | MS.gene044627:intron | 35.0% |
| ! | TTTGATCGGTGATTGATTCA+CGG | - | chr3.1:11222935-11222954 | None:intergenic | 35.0% |
| !! | ACTATGAAGAGTATCAATGC+AGG | + | chr3.1:11224734-11224753 | MS.gene044627:intron | 35.0% |
| AACCCATACACCATTGACAA+AGG | - | chr3.1:11223201-11223220 | None:intergenic | 40.0% | |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.1:11225404-11225423 | None:intergenic | 40.0% | |
| AAGCTCAGTTTGAATACCCT+TGG | - | chr3.1:11225987-11226006 | None:intergenic | 40.0% | |
| ACAAATATCATGGCAAGAGG+TGG | + | chr3.1:11224681-11224700 | MS.gene044627:intron | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.1:11226055-11226074 | MS.gene044627:CDS | 40.0% | |
| AGACTATAGTGCAGTAAGTC+AGG | - | chr3.1:11225713-11225732 | None:intergenic | 40.0% | |
| AGATTCACATGCAACTAAGG+AGG | + | chr3.1:11224620-11224639 | MS.gene044627:intron | 40.0% | |
| AGCGAGACAGTTAAGATGAT+CGG | - | chr3.1:11223120-11223139 | None:intergenic | 40.0% | |
| AGGAGATTCACATGCAACTA+AGG | + | chr3.1:11224617-11224636 | MS.gene044627:intron | 40.0% | |
| AGTACAACTTGAAGAGACAG+TGG | - | chr3.1:11223026-11223045 | None:intergenic | 40.0% | |
| AGTGATGAGCATATTGTAGG+AGG | - | chr3.1:11224070-11224089 | None:intergenic | 40.0% | |
| ATGCAACTAAGGAGGAAGAA+TGG | + | chr3.1:11224628-11224647 | MS.gene044627:intron | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.1:11226065-11226084 | None:intergenic | 40.0% | |
| CATAGGTCTTCGACATTAGT+CGG | - | chr3.1:11224380-11224399 | None:intergenic | 40.0% | |
| CTCCTTTGTCAATGGTGTAT+GGG | + | chr3.1:11223196-11223215 | MS.gene044627:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.1:11226037-11226056 | MS.gene044627:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.1:11225599-11225618 | MS.gene044627:CDS | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | - | chr3.1:11225662-11225681 | None:intergenic | 40.0% | |
| GCTGCAATATGTTGTTCCAA+GGG | + | chr3.1:11225968-11225987 | MS.gene044627:CDS | 40.0% | |
| GGGGATATACAAACATACCT+TGG | - | chr3.1:11223309-11223328 | None:intergenic | 40.0% | |
| GTACTCAAGTTAAGCATCAG+AGG | - | chr3.1:11224470-11224489 | None:intergenic | 40.0% | |
| GTTGGAAAATATAGAGCGTG+AGG | - | chr3.1:11224117-11224136 | None:intergenic | 40.0% | |
| TAGTCGGACTTGAACTTTAG+AGG | - | chr3.1:11224364-11224383 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.1:11225808-11225827 | MS.gene044627:CDS | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.1:11225844-11225863 | MS.gene044627:CDS | 40.0% | |
| TCTCCTTTGTCAATGGTGTA+TGG | + | chr3.1:11223195-11223214 | MS.gene044627:CDS | 40.0% | |
| TCTTGATGAAGACTTCTGCA+TGG | - | chr3.1:11224655-11224674 | None:intergenic | 40.0% | |
| TGAGCAACTACGTACTACAT+TGG | + | chr3.1:11224783-11224802 | MS.gene044627:intron | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.1:11225429-11225448 | None:intergenic | 40.0% | |
| TGCTGCAATATGTTGTTCCA+AGG | + | chr3.1:11225967-11225986 | MS.gene044627:CDS | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11225847-11225866 | MS.gene044627:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:11225359-11225378 | MS.gene044627:CDS | 40.0% | |
| ! | ATGGATTGCAGCAAAAAGTG+GGG | - | chr3.1:11223330-11223349 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11225447-11225466 | MS.gene044627:CDS | 40.0% |
| ! | CATGGATTGCAGCAAAAAGT+GGG | - | chr3.1:11223331-11223350 | None:intergenic | 40.0% |
| ! | CGCTCTATATTTTCCAACAG+TGG | + | chr3.1:11224119-11224138 | MS.gene044627:intron | 40.0% |
| ! | GACTTGAACTTTAGAGGATC+GGG | - | chr3.1:11224358-11224377 | None:intergenic | 40.0% |
| ! | GGACTTGAACTTTAGAGGAT+CGG | - | chr3.1:11224359-11224378 | None:intergenic | 40.0% |
| ! | GTTAAGATGATCGGTGGATT+TGG | - | chr3.1:11223111-11223130 | None:intergenic | 40.0% |
| ! | TCGAGAAGTTGTTGTTGTGT+TGG | - | chr3.1:11223077-11223096 | None:intergenic | 40.0% |
| ! | TTGAGTGTCTTATTCGCCAT+AGG | - | chr3.1:11224397-11224416 | None:intergenic | 40.0% |
| !! | AACATATAGTTGGTGACACG+AGG | - | chr3.1:11224190-11224209 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.1:11225848-11225867 | None:intergenic | 40.0% |
| !! | ATGAAGAGTATCAATGCAGG+AGG | + | chr3.1:11224737-11224756 | MS.gene044627:intron | 40.0% |
| !! | TAAAGATGGACTGTCAGCAT+TGG | + | chr3.1:11225667-11225686 | MS.gene044627:CDS | 40.0% |
| AACAACTTCTCGACTTCCTC+CGG | + | chr3.1:11223084-11223103 | MS.gene044627:CDS | 45.0% | |
| AGAAGGCTATAGAGGAGTTC+AGG | + | chr3.1:11224321-11224340 | MS.gene044627:intron | 45.0% | |
| AGTTAAGCATCAGAGGTCAC+AGG | - | chr3.1:11224463-11224482 | None:intergenic | 45.0% | |
| ATCTCCTCGCTAGTCATGAA+GGG | - | chr3.1:11225545-11225564 | None:intergenic | 45.0% | |
| CGACTAATGTCGAAGACCTA+TGG | + | chr3.1:11224378-11224397 | MS.gene044627:intron | 45.0% | |
| GAGACAGTTAAGATGATCGG+TGG | - | chr3.1:11223117-11223136 | None:intergenic | 45.0% | |
| TCAAACAGAGTAGAGCCTTG+TGG | - | chr3.1:11224285-11224304 | None:intergenic | 45.0% | |
| TGGATTGCAGCAAAAAGTGG+GGG | - | chr3.1:11223329-11223348 | None:intergenic | 45.0% | |
| TTCGAATAGAGCACAAGTCC+AGG | + | chr3.1:11224418-11224437 | MS.gene044627:intron | 45.0% | |
| ! | AAGGAGTACATGTAGCCACA+AGG | + | chr3.1:11224267-11224286 | MS.gene044627:intron | 45.0% |
| ! | GCATGGATTGCAGCAAAAAG+TGG | - | chr3.1:11223332-11223351 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.1:11225830-11225849 | MS.gene044627:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.1:11225511-11225530 | MS.gene044627:CDS | 45.0% |
| !! | ACTTGTTTCTGTCGTGCTCT+CGG | + | chr3.1:11223145-11223164 | MS.gene044627:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | chr3.1:11225863-11225882 | MS.gene044627:CDS | 45.0% |
| !! | GTCAGCATTGGTTGATGAGT+TGG | + | chr3.1:11225679-11225698 | MS.gene044627:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.1:11225827-11225846 | MS.gene044627:CDS | 45.0% |
| AGCTGCGTTCGGTCATTAAC+AGG | + | chr3.1:11224148-11224167 | MS.gene044627:intron | 50.0% | |
| AGTGGTATCAGAGCTGCGTT+CGG | + | chr3.1:11224137-11224156 | MS.gene044627:intron | 50.0% | |
| CATCTCCTCGCTAGTCATGA+AGG | - | chr3.1:11225546-11225565 | None:intergenic | 50.0% | |
| CCATTGACAAAGGAGAGTCG+AGG | - | chr3.1:11223191-11223210 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTTGTCAA+TGG | + | chr3.1:11223188-11223207 | MS.gene044627:CDS | 50.0% | |
| GCTGCGTTCGGTCATTAACA+GGG | + | chr3.1:11224149-11224168 | MS.gene044627:intron | 50.0% | |
| GGATTGCAGCAAAAAGTGGG+GGG | - | chr3.1:11223328-11223347 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.1:11223041-11223060 | MS.gene044627:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.1:11225839-11225858 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | chr3.1:11225740-11225759 | None:intergenic | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.1:11225517-11225536 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.1:11225517-11225536 | MS.gene044627:CDS | 50.0% | |
| ! | CTTTAGAGGATCGGGCTGTT+AGG | - | chr3.1:11224350-11224369 | None:intergenic | 50.0% |
| ! | GATGATCGGTGGATTTGGAC+CGG | - | chr3.1:11223106-11223125 | None:intergenic | 50.0% |
| ATAGAGCGTGAGGGAGCTAG+TGG | - | chr3.1:11224107-11224126 | None:intergenic | 55.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | chr3.1:11225734-11225753 | MS.gene044627:CDS | 55.0% | |
| GGTTCCCTTCATGACTAGCG+AGG | + | chr3.1:11225538-11225557 | MS.gene044627:CDS | 55.0% | |
| ! | CGCAGCTCTGATACCACTGT+TGG | - | chr3.1:11224135-11224154 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.1:11223050-11223069 | MS.gene044627:CDS | 55.0% |
| AGCGTGAGGGAGCTAGTGGT+AGG | - | chr3.1:11224103-11224122 | None:intergenic | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11223179-11223198 | None:intergenic | 60.0% | |
| GCGTGAGGGAGCTAGTGGTA+GGG | - | chr3.1:11224102-11224121 | None:intergenic | 60.0% | |
| ! | GATCGGTGGATTTGGACCGG+AGG | - | chr3.1:11223103-11223122 | None:intergenic | 60.0% |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.1:11223049-11223068 | MS.gene044627:CDS | 60.0% |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11223180-11223199 | None:intergenic | 65.0% | |
| CTCTCGGACGCTGCTCCCAC+AGG | + | chr3.1:11223161-11223180 | MS.gene044627:CDS | 70.0% | |
| TCGGACGCTGCTCCCACAGG+TGG | + | chr3.1:11223164-11223183 | MS.gene044627:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 11222924 | 11226105 | 11222924 | ID=MS.gene044627 |
| chr3.1 | mRNA | 11222924 | 11226105 | 11222924 | ID=MS.gene044627.t1;Parent=MS.gene044627 |
| chr3.1 | exon | 11222924 | 11223310 | 11222924 | ID=MS.gene044627.t1.exon1;Parent=MS.gene044627.t1 |
| chr3.1 | CDS | 11222924 | 11223310 | 11222924 | ID=cds.MS.gene044627.t1;Parent=MS.gene044627.t1 |
| chr3.1 | exon | 11225329 | 11226105 | 11225329 | ID=MS.gene044627.t1.exon2;Parent=MS.gene044627.t1 |
| chr3.1 | CDS | 11225329 | 11226105 | 11225329 | ID=cds.MS.gene044627.t1;Parent=MS.gene044627.t1 |
| Gene Sequence |
| Protein sequence |
