Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044628.t1 | RHN65795.1 | 83.8 | 388 | 60 | 1 | 1 | 385 | 54 | 441 | 7.30E-173 | 616.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044628.t1 | Q9S7T8 | 53.1 | 390 | 176 | 3 | 1 | 383 | 1 | 390 | 9.9e-110 | 398.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044628.t1 | G7IW05 | 83.8 | 388 | 60 | 1 | 1 | 385 | 1 | 388 | 5.3e-173 | 616.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065945 | MS.gene044628 | PPI |
MS.gene044628 | MS.gene045585 | PPI |
MS.gene044628 | MS.gene065944 | PPI |
MS.gene006610 | MS.gene044628 | PPI |
MS.gene031697 | MS.gene044628 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044628.t1 | MTR_3g018740 | 83.763 | 388 | 60 | 1 | 1 | 385 | 1 | 388 | 0.0 | 639 |
MS.gene044628.t1 | MTR_3g101010 | 71.649 | 388 | 104 | 2 | 1 | 383 | 1 | 387 | 0.0 | 526 |
MS.gene044628.t1 | MTR_2g045980 | 68.878 | 392 | 111 | 4 | 1 | 385 | 1 | 388 | 0.0 | 514 |
MS.gene044628.t1 | MTR_8g027395 | 68.930 | 383 | 115 | 3 | 3 | 383 | 15 | 395 | 0.0 | 514 |
MS.gene044628.t1 | MTR_4g045707 | 68.407 | 383 | 117 | 2 | 4 | 383 | 5 | 386 | 0.0 | 512 |
MS.gene044628.t1 | MTR_2g046030 | 67.347 | 392 | 117 | 4 | 1 | 385 | 1 | 388 | 0.0 | 508 |
MS.gene044628.t1 | MTR_8g027420 | 67.363 | 383 | 110 | 4 | 3 | 383 | 4 | 373 | 1.66e-175 | 493 |
MS.gene044628.t1 | MTR_3g101180 | 65.316 | 395 | 119 | 6 | 5 | 383 | 6 | 398 | 2.83e-174 | 491 |
MS.gene044628.t1 | MTR_8g461160 | 65.897 | 390 | 123 | 4 | 5 | 385 | 6 | 394 | 1.86e-171 | 484 |
MS.gene044628.t1 | MTR_3g048000 | 64.567 | 381 | 114 | 4 | 6 | 383 | 28 | 390 | 3.47e-170 | 481 |
MS.gene044628.t1 | MTR_3g101130 | 63.660 | 388 | 128 | 4 | 4 | 383 | 5 | 387 | 8.67e-167 | 472 |
MS.gene044628.t1 | MTR_3g101030 | 62.972 | 397 | 121 | 5 | 10 | 383 | 34 | 427 | 1.39e-166 | 473 |
MS.gene044628.t1 | MTR_4g088535 | 66.667 | 378 | 106 | 5 | 5 | 380 | 7 | 366 | 2.45e-166 | 471 |
MS.gene044628.t1 | MTR_7g451890 | 61.954 | 389 | 138 | 3 | 5 | 384 | 14 | 401 | 2.74e-166 | 471 |
MS.gene044628.t1 | MTR_4g088525 | 66.205 | 361 | 120 | 2 | 24 | 383 | 8 | 367 | 7.06e-166 | 469 |
MS.gene044628.t1 | MTR_7g050810 | 61.637 | 391 | 140 | 3 | 3 | 384 | 14 | 403 | 3.36e-165 | 468 |
MS.gene044628.t1 | MTR_7g047780 | 62.725 | 389 | 135 | 4 | 5 | 384 | 14 | 401 | 1.76e-164 | 466 |
MS.gene044628.t1 | MTR_7g050750 | 61.381 | 391 | 141 | 4 | 3 | 384 | 6 | 395 | 9.48e-163 | 462 |
MS.gene044628.t1 | MTR_3g015620 | 61.954 | 389 | 114 | 4 | 5 | 384 | 16 | 379 | 1.10e-153 | 438 |
MS.gene044628.t1 | MTR_3g101050 | 63.731 | 386 | 109 | 6 | 8 | 383 | 32 | 396 | 1.57e-151 | 434 |
MS.gene044628.t1 | MTR_3g101190 | 55.584 | 385 | 94 | 6 | 1 | 383 | 1 | 310 | 4.51e-131 | 378 |
MS.gene044628.t1 | MTR_3g102920 | 54.822 | 394 | 127 | 7 | 5 | 383 | 51 | 408 | 1.07e-129 | 379 |
MS.gene044628.t1 | MTR_3g018747 | 72.797 | 261 | 53 | 2 | 129 | 385 | 9 | 255 | 7.23e-125 | 360 |
MS.gene044628.t1 | MTR_3g101200 | 52.699 | 389 | 149 | 5 | 3 | 383 | 29 | 390 | 7.66e-120 | 353 |
MS.gene044628.t1 | MTR_3g100995 | 64.844 | 256 | 83 | 2 | 133 | 384 | 11 | 263 | 2.08e-111 | 327 |
MS.gene044628.t1 | MTR_7g050830 | 55.414 | 314 | 107 | 3 | 5 | 296 | 16 | 318 | 3.21e-111 | 328 |
MS.gene044628.t1 | MTR_3g100010 | 57.051 | 312 | 86 | 3 | 28 | 306 | 40 | 336 | 1.83e-110 | 327 |
MS.gene044628.t1 | MTR_3g015760 | 63.118 | 263 | 87 | 3 | 128 | 384 | 22 | 280 | 5.55e-101 | 301 |
MS.gene044628.t1 | MTR_3g111160 | 68.095 | 210 | 64 | 1 | 177 | 383 | 9 | 218 | 8.95e-91 | 272 |
MS.gene044628.t1 | MTR_3g114310 | 42.239 | 393 | 206 | 11 | 6 | 382 | 20 | 407 | 1.78e-88 | 273 |
MS.gene044628.t1 | MTR_3g100520 | 62.037 | 216 | 71 | 3 | 170 | 383 | 1 | 207 | 1.80e-83 | 253 |
MS.gene044628.t1 | MTR_3g101110 | 48.718 | 312 | 115 | 7 | 60 | 359 | 2 | 280 | 2.28e-81 | 251 |
MS.gene044628.t1 | MTR_2g046410 | 59.244 | 238 | 78 | 5 | 155 | 385 | 124 | 349 | 4.41e-81 | 252 |
MS.gene044628.t1 | MTR_3g099970 | 60.099 | 203 | 63 | 2 | 123 | 325 | 14 | 198 | 1.08e-75 | 233 |
MS.gene044628.t1 | MTR_3g111150 | 64.205 | 176 | 39 | 2 | 7 | 182 | 1 | 152 | 1.33e-68 | 214 |
MS.gene044628.t1 | MTR_3g101150 | 64.557 | 158 | 46 | 2 | 235 | 383 | 1 | 157 | 9.80e-61 | 193 |
MS.gene044628.t1 | MTR_3g102870 | 59.756 | 164 | 56 | 2 | 192 | 346 | 1 | 163 | 8.63e-57 | 184 |
MS.gene044628.t1 | MTR_3g100990 | 62.338 | 154 | 57 | 1 | 1 | 154 | 1 | 153 | 1.75e-53 | 185 |
MS.gene044628.t1 | MTR_3g101020 | 53.226 | 186 | 56 | 2 | 203 | 384 | 1 | 159 | 1.26e-52 | 172 |
MS.gene044628.t1 | MTR_4g093550 | 67.816 | 87 | 28 | 0 | 2 | 88 | 3 | 89 | 3.81e-32 | 117 |
MS.gene044628.t1 | MTR_6g046890 | 65.753 | 73 | 25 | 0 | 13 | 85 | 7 | 79 | 1.79e-23 | 95.1 |
MS.gene044628.t1 | MTR_3g101140 | 60.811 | 74 | 22 | 2 | 316 | 383 | 42 | 114 | 5.84e-18 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044628.t1 | AT1G47710 | 52.821 | 390 | 177 | 3 | 1 | 383 | 1 | 390 | 1.87e-142 | 410 |
MS.gene044628.t1 | AT1G47710 | 52.821 | 390 | 177 | 3 | 1 | 383 | 28 | 417 | 1.04e-141 | 409 |
MS.gene044628.t1 | AT3G45220 | 47.704 | 392 | 193 | 5 | 1 | 382 | 1 | 390 | 4.99e-124 | 363 |
MS.gene044628.t1 | AT2G25240 | 48.454 | 388 | 188 | 6 | 1 | 382 | 1 | 382 | 2.72e-118 | 348 |
MS.gene044628.t1 | AT2G26390 | 48.241 | 398 | 178 | 8 | 1 | 382 | 1 | 386 | 1.08e-117 | 347 |
MS.gene044628.t1 | AT1G64030 | 43.003 | 393 | 191 | 6 | 1 | 382 | 1 | 371 | 6.17e-99 | 299 |
MS.gene044628.t1 | AT2G14540 | 42.821 | 390 | 190 | 7 | 3 | 382 | 31 | 397 | 6.93e-95 | 290 |
MS.gene044628.t1 | AT2G35580 | 43.511 | 393 | 175 | 9 | 1 | 382 | 15 | 371 | 1.39e-94 | 288 |
MS.gene044628.t1 | AT1G62170 | 43.869 | 367 | 171 | 6 | 27 | 382 | 89 | 431 | 5.76e-93 | 285 |
MS.gene044628.t1 | AT1G62170 | 40.250 | 400 | 171 | 7 | 27 | 382 | 89 | 464 | 4.52e-86 | 269 |
MS.gene044628.t1 | AT1G64010 | 43.318 | 217 | 97 | 4 | 170 | 382 | 1 | 195 | 5.05e-52 | 172 |
MS.gene044628.t1 | AT1G64010 | 43.564 | 202 | 88 | 4 | 185 | 382 | 2 | 181 | 4.90e-46 | 156 |
MS.gene044628.t1 | AT1G62160 | 41.243 | 177 | 81 | 7 | 209 | 382 | 62 | 218 | 4.90e-30 | 115 |
MS.gene044628.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 126 | 241 | 5 | 120 | 9.06e-30 | 111 |
MS.gene044628.t1 | AT1G51330 | 44.526 | 137 | 61 | 3 | 103 | 235 | 15 | 140 | 4.10e-24 | 98.6 |
MS.gene044628.t1 | AT1G64020 | 33.036 | 112 | 72 | 3 | 10 | 119 | 10 | 120 | 8.96e-14 | 67.8 |
Find 79 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.1:+11243628 | MS.gene044628:CDS |
TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 3.1:+11243527 | MS.gene044628:CDS |
CCTCGACTCTCCTTTGTTAA+TGG | 0.226202 | 3.1:+11242887 | MS.gene044628:CDS |
TTCATTGAAGTAAATGAAAA+AGG | 0.248061 | 3.1:+11244111 | MS.gene044628:CDS |
GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11243570 | None:intergenic |
TCTCCTTTGTTAATGGTGTA+TGG | 0.291781 | 3.1:+11242894 | MS.gene044628:CDS |
GTTGAGATGATCGGTGGATT+TGG | 0.307174 | 3.1:-11242807 | None:intergenic |
TTGAGATGATCGGTGGATTT+GGG | 0.309598 | 3.1:-11242806 | None:intergenic |
CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 3.1:-11243854 | None:intergenic |
ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.1:+11244237 | MS.gene044628:CDS |
TTCTAATTACGAGGCCACTA+TGG | 0.368326 | 3.1:+11242964 | MS.gene044628:CDS |
CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 3.1:+11243787 | MS.gene044628:CDS |
GTTAAGCTATCAACTGATCT+TGG | 0.387644 | 3.1:-11243592 | None:intergenic |
CTCCTTTGTTAATGGTGTAT+GGG | 0.393630 | 3.1:+11242895 | MS.gene044628:CDS |
TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.1:+11243991 | MS.gene044628:CDS |
TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.1:-11242928 | None:intergenic |
AACAGTCCATCTTTGGCATC+TGG | 0.409162 | 3.1:-11243847 | None:intergenic |
TGCATAGGGAAACGTTTGTT+TGG | 0.411227 | 3.1:-11242649 | None:intergenic |
AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.1:-11242945 | None:intergenic |
TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.1:+11243984 | MS.gene044628:CDS |
GGAATCAGACGTTTGATGTA+TGG | 0.438429 | 3.1:+11243656 | MS.gene044628:CDS |
CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.1:+11242860 | MS.gene044628:CDS |
GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.1:-11242927 | None:intergenic |
TTTCTTCCAGATGCCAAAGA+TGG | 0.454297 | 3.1:+11243841 | MS.gene044628:CDS |
GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 3.1:+11243528 | MS.gene044628:CDS |
ATCTCAACGATCTCGCCTCT+CGG | 0.459180 | 3.1:+11242822 | MS.gene044628:CDS |
GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3.1:+11243867 | MS.gene044628:CDS |
AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 3.1:+11243858 | MS.gene044628:CDS |
GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.1:+11244138 | MS.gene044628:CDS |
TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 3.1:-11243702 | None:intergenic |
TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.1:-11242864 | None:intergenic |
TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.1:-11244207 | None:intergenic |
CATCCCCTCGGTAGTCATGA+AGG | 0.493267 | 3.1:-11243731 | None:intergenic |
AGACTATCGTGTAGTAAGTC+AGG | 0.494602 | 3.1:-11243898 | None:intergenic |
CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.1:+11244219 | MS.gene044628:CDS |
CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 3.1:+11243635 | MS.gene044628:CDS |
TAGGGAAACGTTTGTTTGGT+TGG | 0.507693 | 3.1:-11242645 | None:intergenic |
TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3.1:-11243925 | None:intergenic |
ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.1:+11242749 | MS.gene044628:CDS |
GTACTAAGCATCATCGCTGC+TGG | 0.512015 | 3.1:+11242740 | MS.gene044628:CDS |
AACAGCTTCTCGACTTCCTC+CGG | 0.514641 | 3.1:+11242783 | MS.gene044628:CDS |
TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.1:+11242863 | MS.gene044628:CDS |
CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.1:-11244206 | None:intergenic |
CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.1:+11242748 | MS.gene044628:CDS |
GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.1:-11244024 | None:intergenic |
GACACGATTTCTTTGAAGGA+AGG | 0.526117 | 3.1:-11242941 | None:intergenic |
TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3.1:-11242631 | None:intergenic |
CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.1:-11244244 | None:intergenic |
ACAGATGTTTCGCAATGCAT+AGG | 0.529767 | 3.1:-11242664 | None:intergenic |
GGCGAGATCGTTGAGATGAT+CGG | 0.531337 | 3.1:-11242816 | None:intergenic |
TGCATTAGCAAAGATGAGCT+TGG | 0.539499 | 3.1:-11243614 | None:intergenic |
GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.1:-11242978 | None:intergenic |
TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.1:-11244273 | None:intergenic |
CAGATGTTTCGCAATGCATA+GGG | 0.546503 | 3.1:-11242663 | None:intergenic |
ATCAATAAACTGCATCCCCT+CGG | 0.550365 | 3.1:-11243743 | None:intergenic |
GATGATCGGTGGATTTGGGC+CGG | 0.554595 | 3.1:-11242802 | None:intergenic |
GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.1:-11244080 | None:intergenic |
AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.1:-11243589 | None:intergenic |
TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.1:+11242988 | MS.gene044628:CDS |
GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.1:-11242774 | None:intergenic |
TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 3.1:+11243705 | MS.gene044628:CDS |
TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.1:-11242773 | None:intergenic |
ATCCCCTCGGTAGTCATGAA+GGG | 0.614506 | 3.1:-11243730 | None:intergenic |
TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.1:+11243996 | MS.gene044628:CDS |
GGGAGCAGCATCGGAGAGCA+CGG | 0.622379 | 3.1:-11242855 | None:intergenic |
GATCGGTGGATTTGGGCCGG+AGG | 0.625103 | 3.1:-11242799 | None:intergenic |
GTTCCCTTCATGACTACCGA+GGG | 0.628600 | 3.1:+11243727 | MS.gene044628:CDS |
GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11242875 | None:intergenic |
TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.1:-11244203 | None:intergenic |
CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 3.1:+11243855 | MS.gene044628:CDS |
GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11242876 | None:intergenic |
AACCCATACACCATTAACAA+AGG | 0.653670 | 3.1:-11242897 | None:intergenic |
AATCGTGTCTTCTAATTACG+AGG | 0.667058 | 3.1:+11242955 | MS.gene044628:CDS |
CACGGTAGAAACAAGCCGAG+AGG | 0.667491 | 3.1:-11242837 | None:intergenic |
GGTTCCCTTCATGACTACCG+AGG | 0.692485 | 3.1:+11243726 | MS.gene044628:CDS |
CCATTAACAAAGGAGAGTCG+AGG | 0.698808 | 3.1:-11242887 | None:intergenic |
AGTACAACTTGAAGAGACAG+TGG | 0.716234 | 3.1:-11242722 | None:intergenic |
GAGATCGTTGAGATGATCGG+TGG | 0.721163 | 3.1:-11242813 | None:intergenic |
TTCCCTTCATGACTACCGAG+GGG | 0.739663 | 3.1:+11243728 | MS.gene044628:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAATAGTTATGATATATT+TGG | + | chr3.1:11243238-11243257 | MS.gene044628:intron | 15.0% |
!!! | ATGGATTTTTAAATTTGATA+TGG | + | chr3.1:11243486-11243505 | MS.gene044628:intron | 15.0% |
!!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.1:11243495-11243514 | MS.gene044628:intron | 15.0% |
!! | GAAATATATTAGAAACAGAA+AGG | - | chr3.1:11244083-11244102 | None:intergenic | 20.0% |
!! | GTATCATATAAACATCTTAT+TGG | - | chr3.1:11243330-11243349 | None:intergenic | 20.0% |
!! | TAGTTATGATATATTTGGAT+TGG | + | chr3.1:11243243-11243262 | MS.gene044628:intron | 20.0% |
!! | TATCATAACTATTTGATTGA+TGG | - | chr3.1:11243234-11243253 | None:intergenic | 20.0% |
!! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.1:11244111-11244130 | MS.gene044628:CDS | 20.0% |
!!! | AAATTTTGAATCTTGGAATT+CGG | - | chr3.1:11243954-11243973 | None:intergenic | 20.0% |
!!! | AATAACATTTGCTGTAAATT+AGG | - | chr3.1:11243048-11243067 | None:intergenic | 20.0% |
!!! | ATTTAAAAATCCATTAGCTT+TGG | - | chr3.1:11243480-11243499 | None:intergenic | 20.0% |
!!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.1:11243961-11243980 | None:intergenic | 20.0% |
! | AGTTATAAGTATAATGCTCT+TGG | + | chr3.1:11243111-11243130 | MS.gene044628:intron | 25.0% |
! | ATTAGGATATGAATTGAAAG+AGG | - | chr3.1:11243031-11243050 | None:intergenic | 25.0% |
! | ATTGGTATATAGTATAATGG+AGG | + | chr3.1:11243261-11243280 | MS.gene044628:intron | 25.0% |
! | CAATTAGTATTTAGAAGCTT+TGG | - | chr3.1:11243352-11243371 | None:intergenic | 25.0% |
! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.1:11244209-11244228 | None:intergenic | 25.0% |
! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.1:11243528-11243547 | MS.gene044628:CDS | 25.0% |
! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:11244210-11244229 | None:intergenic | 25.0% |
! | TGACTAAAGAAGTGAATTTA+TGG | + | chr3.1:11243527-11243546 | MS.gene044628:CDS | 25.0% |
! | TTAGGATATGAATTGAAAGA+GGG | - | chr3.1:11243030-11243049 | None:intergenic | 25.0% |
!! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.1:11243691-11243710 | MS.gene044628:CDS | 25.0% |
!! | TTGGTATATAGTATAATGGA+GGG | + | chr3.1:11243262-11243281 | MS.gene044628:intron | 25.0% |
!!! | TGGATTGGTATATAGTATAA+TGG | + | chr3.1:11243258-11243277 | MS.gene044628:intron | 25.0% |
!!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.1:11242988-11243007 | MS.gene044628:CDS | 25.0% |
CTTCGTCTTCTTTATAAGAA+AGG | + | chr3.1:11243787-11243806 | MS.gene044628:CDS | 30.0% | |
GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11243573-11243592 | None:intergenic | 30.0% | |
GTATGTCCATCTTGTATATT+TGG | + | chr3.1:11243401-11243420 | MS.gene044628:intron | 30.0% | |
GTTTATTTCAGCACAAAGTA+GGG | + | chr3.1:11243371-11243390 | MS.gene044628:intron | 30.0% | |
TAATCAGAAATAAGAAAGGG+TGG | - | chr3.1:11244206-11244225 | None:intergenic | 30.0% | |
TAGGATATGAATTGAAAGAG+GGG | - | chr3.1:11243029-11243048 | None:intergenic | 30.0% | |
TCGATAATTACCAAAGCTAA+TGG | + | chr3.1:11243467-11243486 | MS.gene044628:intron | 30.0% | |
TGAAACTTCTCATATGTTGA+AGG | + | chr3.1:11243984-11244003 | MS.gene044628:CDS | 30.0% | |
TGTTTATTTCAGCACAAAGT+AGG | + | chr3.1:11243370-11243389 | MS.gene044628:intron | 30.0% | |
! | AGAGTAGGTTCTTCTTTTAA+AGG | + | chr3.1:11243167-11243186 | MS.gene044628:intron | 30.0% |
! | TGGTATATAGTATAATGGAG+GGG | + | chr3.1:11243263-11243282 | MS.gene044628:intron | 30.0% |
AACCCATACACCATTAACAA+AGG | - | chr3.1:11242900-11242919 | None:intergenic | 35.0% | |
AATCGTGTCTTCTAATTACG+AGG | + | chr3.1:11242955-11242974 | MS.gene044628:CDS | 35.0% | |
ACACCTCCAAATATACAAGA+TGG | - | chr3.1:11243410-11243429 | None:intergenic | 35.0% | |
AGAAGACACGATTTCTTTGA+AGG | - | chr3.1:11242948-11242967 | None:intergenic | 35.0% | |
AGGATGAAGTGTATGATTCA+TGG | + | chr3.1:11243187-11243206 | MS.gene044628:intron | 35.0% | |
CTCCTTTGTTAATGGTGTAT+GGG | + | chr3.1:11242895-11242914 | MS.gene044628:CDS | 35.0% | |
GAAATCAACATAAGCCATAG+TGG | - | chr3.1:11242981-11243000 | None:intergenic | 35.0% | |
GCTAATGCACTCTACTTTAA+AGG | + | chr3.1:11243628-11243647 | MS.gene044628:CDS | 35.0% | |
GGAGGGGAATGAAATTATTT+GGG | + | chr3.1:11243279-11243298 | MS.gene044628:intron | 35.0% | |
GTTAAGCTATCAACTGATCT+TGG | - | chr3.1:11243595-11243614 | None:intergenic | 35.0% | |
TCTCATATGTTGAAGGAGTT+AGG | + | chr3.1:11243991-11244010 | MS.gene044628:CDS | 35.0% | |
TCTCCTTTGTTAATGGTGTA+TGG | + | chr3.1:11242894-11242913 | MS.gene044628:CDS | 35.0% | |
TGGAGGGGAATGAAATTATT+TGG | + | chr3.1:11243278-11243297 | MS.gene044628:intron | 35.0% | |
TGTCCATCTTGTATATTTGG+AGG | + | chr3.1:11243404-11243423 | MS.gene044628:intron | 35.0% | |
!! | CTGATTCTAGTTTAGAGAGT+AGG | + | chr3.1:11243152-11243171 | MS.gene044628:intron | 35.0% |
!! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.1:11242634-11242653 | None:intergenic | 35.0% |
AAGCTATCAACTGATCTTGG+AGG | - | chr3.1:11243592-11243611 | None:intergenic | 40.0% | |
ACAGATGTTTCGCAATGCAT+AGG | - | chr3.1:11242667-11242686 | None:intergenic | 40.0% | |
ACTGGAACCATTCTCTTTGT+TGG | + | chr3.1:11244237-11244256 | MS.gene044628:CDS | 40.0% | |
AGACTATCGTGTAGTAAGTC+AGG | - | chr3.1:11243901-11243920 | None:intergenic | 40.0% | |
AGTACAACTTGAAGAGACAG+TGG | - | chr3.1:11242725-11242744 | None:intergenic | 40.0% | |
ATCAATAAACTGCATCCCCT+CGG | - | chr3.1:11243746-11243765 | None:intergenic | 40.0% | |
CAATGCTAACAGTCCATCTT+TGG | - | chr3.1:11243857-11243876 | None:intergenic | 40.0% | |
CACTTGTCCAACAAAGAGAA+TGG | - | chr3.1:11244247-11244266 | None:intergenic | 40.0% | |
CAGATGTTTCGCAATGCATA+GGG | - | chr3.1:11242666-11242685 | None:intergenic | 40.0% | |
CTGATTAGAGAAGATTCGAC+TGG | + | chr3.1:11244219-11244238 | MS.gene044628:CDS | 40.0% | |
GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:11242930-11242949 | None:intergenic | 40.0% | |
GATATGAATTGAAAGAGGGG+AGG | - | chr3.1:11243026-11243045 | None:intergenic | 40.0% | |
GGAATCAGACGTTTGATGTA+TGG | + | chr3.1:11243656-11243675 | MS.gene044628:CDS | 40.0% | |
TAGGGAAACGTTTGTTTGGT+TGG | - | chr3.1:11242648-11242667 | None:intergenic | 40.0% | |
TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.1:11243996-11244015 | MS.gene044628:CDS | 40.0% | |
TCATCTACTTCTACTTCAGC+AGG | - | chr3.1:11243928-11243947 | None:intergenic | 40.0% | |
TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.1:11244032-11244051 | MS.gene044628:CDS | 40.0% | |
TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:11242931-11242950 | None:intergenic | 40.0% | |
TGACTGAGCTTCCATTCAAA+AGG | - | chr3.1:11243705-11243724 | None:intergenic | 40.0% | |
TGCATAGGGAAACGTTTGTT+TGG | - | chr3.1:11242652-11242671 | None:intergenic | 40.0% | |
TGCATTAGCAAAGATGAGCT+TGG | - | chr3.1:11243617-11243636 | None:intergenic | 40.0% | |
TGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11244035-11244054 | MS.gene044628:CDS | 40.0% | |
TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:11243547-11243566 | MS.gene044628:CDS | 40.0% | |
TTCTAATTACGAGGCCACTA+TGG | + | chr3.1:11242964-11242983 | MS.gene044628:CDS | 40.0% | |
TTTCTTCCAGATGCCAAAGA+TGG | + | chr3.1:11243841-11243860 | MS.gene044628:CDS | 40.0% | |
TTTGAATGGAAGCTCAGTCA+AGG | + | chr3.1:11243705-11243724 | MS.gene044628:CDS | 40.0% | |
! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11243635-11243654 | MS.gene044628:CDS | 40.0% |
! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.1:11242944-11242963 | None:intergenic | 40.0% |
! | GGAGGTATACAAACATACCT+TGG | - | chr3.1:11243008-11243027 | None:intergenic | 40.0% |
! | TTGAGATGATCGGTGGATTT+GGG | - | chr3.1:11242809-11242828 | None:intergenic | 40.0% |
!! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.1:11244036-11244055 | None:intergenic | 40.0% |
!! | CAAAGATGGACTGTTAGCAT+TGG | + | chr3.1:11243855-11243874 | MS.gene044628:CDS | 40.0% |
AACAGTCCATCTTTGGCATC+TGG | - | chr3.1:11243850-11243869 | None:intergenic | 45.0% | |
CCATTAACAAAGGAGAGTCG+AGG | - | chr3.1:11242890-11242909 | None:intergenic | 45.0% | |
CCTCGACTCTCCTTTGTTAA+TGG | + | chr3.1:11242887-11242906 | MS.gene044628:CDS | 45.0% | |
TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.1:11242776-11242795 | None:intergenic | 45.0% | |
! | GTTGAGATGATCGGTGGATT+TGG | - | chr3.1:11242810-11242829 | None:intergenic | 45.0% |
! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.1:11244018-11244037 | MS.gene044628:CDS | 45.0% |
!! | AGATGGACTGTTAGCATTGG+TGG | + | chr3.1:11243858-11243877 | MS.gene044628:CDS | 45.0% |
!! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.1:11244015-11244034 | MS.gene044628:CDS | 45.0% |
!! | GTTAGCATTGGTGGAGAAGT+TGG | + | chr3.1:11243867-11243886 | MS.gene044628:CDS | 45.0% |
AACAGCTTCTCGACTTCCTC+CGG | + | chr3.1:11242783-11242802 | MS.gene044628:CDS | 50.0% | |
ATCCCCTCGGTAGTCATGAA+GGG | - | chr3.1:11243733-11243752 | None:intergenic | 50.0% | |
ATCTCAACGATCTCGCCTCT+CGG | + | chr3.1:11242822-11242841 | MS.gene044628:CDS | 50.0% | |
GAGATCGTTGAGATGATCGG+TGG | - | chr3.1:11242816-11242835 | None:intergenic | 50.0% | |
GGCGAGATCGTTGAGATGAT+CGG | - | chr3.1:11242819-11242838 | None:intergenic | 50.0% | |
GTACTAAGCATCATCGCTGC+TGG | + | chr3.1:11242740-11242759 | MS.gene044628:CDS | 50.0% | |
GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.1:11244027-11244046 | None:intergenic | 50.0% | |
GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.1:11242777-11242796 | None:intergenic | 50.0% | |
GTTCCCTTCATGACTACCGA+GGG | + | chr3.1:11243727-11243746 | MS.gene044628:CDS | 50.0% | |
TTCCCTTCATGACTACCGAG+GGG | + | chr3.1:11243728-11243747 | MS.gene044628:CDS | 50.0% | |
CACGGTAGAAACAAGCCGAG+AGG | - | chr3.1:11242840-11242859 | None:intergenic | 55.0% | |
CATCCCCTCGGTAGTCATGA+AGG | - | chr3.1:11243734-11243753 | None:intergenic | 55.0% | |
GGTTCCCTTCATGACTACCG+AGG | + | chr3.1:11243726-11243745 | MS.gene044628:CDS | 55.0% | |
! | GATGATCGGTGGATTTGGGC+CGG | - | chr3.1:11242805-11242824 | None:intergenic | 55.0% |
!! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.1:11242749-11242768 | MS.gene044628:CDS | 55.0% |
GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.1:11244138-11244157 | MS.gene044628:CDS | 60.0% | |
GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11242878-11242897 | None:intergenic | 60.0% | |
TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.1:11242867-11242886 | None:intergenic | 60.0% | |
!! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.1:11242748-11242767 | MS.gene044628:CDS | 60.0% |
CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.1:11242860-11242879 | MS.gene044628:CDS | 65.0% | |
GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11242879-11242898 | None:intergenic | 65.0% | |
TCCGATGCTGCTCCCACAGG+TGG | + | chr3.1:11242863-11242882 | MS.gene044628:CDS | 65.0% | |
! | GATCGGTGGATTTGGGCCGG+AGG | - | chr3.1:11242802-11242821 | None:intergenic | 65.0% |
! | GGGAGCAGCATCGGAGAGCA+CGG | - | chr3.1:11242858-11242877 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 11242623 | 11244287 | 11242623 | ID=MS.gene044628 |
chr3.1 | mRNA | 11242623 | 11244287 | 11242623 | ID=MS.gene044628.t1;Parent=MS.gene044628 |
chr3.1 | exon | 11242623 | 11243009 | 11242623 | ID=MS.gene044628.t1.exon1;Parent=MS.gene044628.t1 |
chr3.1 | CDS | 11242623 | 11243009 | 11242623 | ID=cds.MS.gene044628.t1;Parent=MS.gene044628.t1 |
chr3.1 | exon | 11243517 | 11244287 | 11243517 | ID=MS.gene044628.t1.exon2;Parent=MS.gene044628.t1 |
chr3.1 | CDS | 11243517 | 11244287 | 11243517 | ID=cds.MS.gene044628.t1;Parent=MS.gene044628.t1 |
Gene Sequence |
Protein sequence |