AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044628


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044628.t1 MTR_3g018740 83.763 388 60 1 1 385 1 388 0.0 639
MS.gene044628.t1 MTR_3g101010 71.649 388 104 2 1 383 1 387 0.0 526
MS.gene044628.t1 MTR_2g045980 68.878 392 111 4 1 385 1 388 0.0 514
MS.gene044628.t1 MTR_8g027395 68.930 383 115 3 3 383 15 395 0.0 514
MS.gene044628.t1 MTR_4g045707 68.407 383 117 2 4 383 5 386 0.0 512
MS.gene044628.t1 MTR_2g046030 67.347 392 117 4 1 385 1 388 0.0 508
MS.gene044628.t1 MTR_8g027420 67.363 383 110 4 3 383 4 373 1.66e-175 493
MS.gene044628.t1 MTR_3g101180 65.316 395 119 6 5 383 6 398 2.83e-174 491
MS.gene044628.t1 MTR_8g461160 65.897 390 123 4 5 385 6 394 1.86e-171 484
MS.gene044628.t1 MTR_3g048000 64.567 381 114 4 6 383 28 390 3.47e-170 481
MS.gene044628.t1 MTR_3g101130 63.660 388 128 4 4 383 5 387 8.67e-167 472
MS.gene044628.t1 MTR_3g101030 62.972 397 121 5 10 383 34 427 1.39e-166 473
MS.gene044628.t1 MTR_4g088535 66.667 378 106 5 5 380 7 366 2.45e-166 471
MS.gene044628.t1 MTR_7g451890 61.954 389 138 3 5 384 14 401 2.74e-166 471
MS.gene044628.t1 MTR_4g088525 66.205 361 120 2 24 383 8 367 7.06e-166 469
MS.gene044628.t1 MTR_7g050810 61.637 391 140 3 3 384 14 403 3.36e-165 468
MS.gene044628.t1 MTR_7g047780 62.725 389 135 4 5 384 14 401 1.76e-164 466
MS.gene044628.t1 MTR_7g050750 61.381 391 141 4 3 384 6 395 9.48e-163 462
MS.gene044628.t1 MTR_3g015620 61.954 389 114 4 5 384 16 379 1.10e-153 438
MS.gene044628.t1 MTR_3g101050 63.731 386 109 6 8 383 32 396 1.57e-151 434
MS.gene044628.t1 MTR_3g101190 55.584 385 94 6 1 383 1 310 4.51e-131 378
MS.gene044628.t1 MTR_3g102920 54.822 394 127 7 5 383 51 408 1.07e-129 379
MS.gene044628.t1 MTR_3g018747 72.797 261 53 2 129 385 9 255 7.23e-125 360
MS.gene044628.t1 MTR_3g101200 52.699 389 149 5 3 383 29 390 7.66e-120 353
MS.gene044628.t1 MTR_3g100995 64.844 256 83 2 133 384 11 263 2.08e-111 327
MS.gene044628.t1 MTR_7g050830 55.414 314 107 3 5 296 16 318 3.21e-111 328
MS.gene044628.t1 MTR_3g100010 57.051 312 86 3 28 306 40 336 1.83e-110 327
MS.gene044628.t1 MTR_3g015760 63.118 263 87 3 128 384 22 280 5.55e-101 301
MS.gene044628.t1 MTR_3g111160 68.095 210 64 1 177 383 9 218 8.95e-91 272
MS.gene044628.t1 MTR_3g114310 42.239 393 206 11 6 382 20 407 1.78e-88 273
MS.gene044628.t1 MTR_3g100520 62.037 216 71 3 170 383 1 207 1.80e-83 253
MS.gene044628.t1 MTR_3g101110 48.718 312 115 7 60 359 2 280 2.28e-81 251
MS.gene044628.t1 MTR_2g046410 59.244 238 78 5 155 385 124 349 4.41e-81 252
MS.gene044628.t1 MTR_3g099970 60.099 203 63 2 123 325 14 198 1.08e-75 233
MS.gene044628.t1 MTR_3g111150 64.205 176 39 2 7 182 1 152 1.33e-68 214
MS.gene044628.t1 MTR_3g101150 64.557 158 46 2 235 383 1 157 9.80e-61 193
MS.gene044628.t1 MTR_3g102870 59.756 164 56 2 192 346 1 163 8.63e-57 184
MS.gene044628.t1 MTR_3g100990 62.338 154 57 1 1 154 1 153 1.75e-53 185
MS.gene044628.t1 MTR_3g101020 53.226 186 56 2 203 384 1 159 1.26e-52 172
MS.gene044628.t1 MTR_4g093550 67.816 87 28 0 2 88 3 89 3.81e-32 117
MS.gene044628.t1 MTR_6g046890 65.753 73 25 0 13 85 7 79 1.79e-23 95.1
MS.gene044628.t1 MTR_3g101140 60.811 74 22 2 316 383 42 114 5.84e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044628.t1 AT1G47710 52.821 390 177 3 1 383 1 390 1.87e-142 410
MS.gene044628.t1 AT1G47710 52.821 390 177 3 1 383 28 417 1.04e-141 409
MS.gene044628.t1 AT3G45220 47.704 392 193 5 1 382 1 390 4.99e-124 363
MS.gene044628.t1 AT2G25240 48.454 388 188 6 1 382 1 382 2.72e-118 348
MS.gene044628.t1 AT2G26390 48.241 398 178 8 1 382 1 386 1.08e-117 347
MS.gene044628.t1 AT1G64030 43.003 393 191 6 1 382 1 371 6.17e-99 299
MS.gene044628.t1 AT2G14540 42.821 390 190 7 3 382 31 397 6.93e-95 290
MS.gene044628.t1 AT2G35580 43.511 393 175 9 1 382 15 371 1.39e-94 288
MS.gene044628.t1 AT1G62170 43.869 367 171 6 27 382 89 431 5.76e-93 285
MS.gene044628.t1 AT1G62170 40.250 400 171 7 27 382 89 464 4.52e-86 269
MS.gene044628.t1 AT1G64010 43.318 217 97 4 170 382 1 195 5.05e-52 172
MS.gene044628.t1 AT1G64010 43.564 202 88 4 185 382 2 181 4.90e-46 156
MS.gene044628.t1 AT1G62160 41.243 177 81 7 209 382 62 218 4.90e-30 115
MS.gene044628.t1 AT1G63280 50.847 118 54 2 126 241 5 120 9.06e-30 111
MS.gene044628.t1 AT1G51330 44.526 137 61 3 103 235 15 140 4.10e-24 98.6
MS.gene044628.t1 AT1G64020 33.036 112 72 3 10 119 10 120 8.96e-14 67.8

Find 79 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCACTCTACTTTAA+AGG 0.141946 3.1:+11243628 MS.gene044628:CDS
TGACTAAAGAAGTGAATTTA+TGG 0.193244 3.1:+11243527 MS.gene044628:CDS
CCTCGACTCTCCTTTGTTAA+TGG 0.226202 3.1:+11242887 MS.gene044628:CDS
TTCATTGAAGTAAATGAAAA+AGG 0.248061 3.1:+11244111 MS.gene044628:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.287252 3.1:-11243570 None:intergenic
TCTCCTTTGTTAATGGTGTA+TGG 0.291781 3.1:+11242894 MS.gene044628:CDS
GTTGAGATGATCGGTGGATT+TGG 0.307174 3.1:-11242807 None:intergenic
TTGAGATGATCGGTGGATTT+GGG 0.309598 3.1:-11242806 None:intergenic
CAATGCTAACAGTCCATCTT+TGG 0.352985 3.1:-11243854 None:intergenic
ACTGGAACCATTCTCTTTGT+TGG 0.353661 3.1:+11244237 MS.gene044628:CDS
TTCTAATTACGAGGCCACTA+TGG 0.368326 3.1:+11242964 MS.gene044628:CDS
CTTCGTCTTCTTTATAAGAA+AGG 0.383719 3.1:+11243787 MS.gene044628:CDS
GTTAAGCTATCAACTGATCT+TGG 0.387644 3.1:-11243592 None:intergenic
CTCCTTTGTTAATGGTGTAT+GGG 0.393630 3.1:+11242895 MS.gene044628:CDS
TCTCATATGTTGAAGGAGTT+AGG 0.397032 3.1:+11243991 MS.gene044628:CDS
TGAAGGAAGGTTGAAGAGAA+AGG 0.398588 3.1:-11242928 None:intergenic
AACAGTCCATCTTTGGCATC+TGG 0.409162 3.1:-11243847 None:intergenic
TGCATAGGGAAACGTTTGTT+TGG 0.411227 3.1:-11242649 None:intergenic
AGAAGACACGATTTCTTTGA+AGG 0.423360 3.1:-11242945 None:intergenic
TGAAACTTCTCATATGTTGA+AGG 0.426857 3.1:+11243984 MS.gene044628:CDS
GGAATCAGACGTTTGATGTA+TGG 0.438429 3.1:+11243656 MS.gene044628:CDS
CTCTCCGATGCTGCTCCCAC+AGG 0.449677 3.1:+11242860 MS.gene044628:CDS
GAAGGAAGGTTGAAGAGAAA+GGG 0.450222 3.1:-11242927 None:intergenic
TTTCTTCCAGATGCCAAAGA+TGG 0.454297 3.1:+11243841 MS.gene044628:CDS
GACTAAAGAAGTGAATTTAT+GGG 0.454605 3.1:+11243528 MS.gene044628:CDS
ATCTCAACGATCTCGCCTCT+CGG 0.459180 3.1:+11242822 MS.gene044628:CDS
GTTAGCATTGGTGGAGAAGT+TGG 0.459448 3.1:+11243867 MS.gene044628:CDS
AGATGGACTGTTAGCATTGG+TGG 0.461266 3.1:+11243858 MS.gene044628:CDS
GAAGCTGCTGCAGCTAGTGC+TGG 0.463886 3.1:+11244138 MS.gene044628:CDS
TGACTGAGCTTCCATTCAAA+AGG 0.469619 3.1:-11243702 None:intergenic
TCCACCTGTGGGAGCAGCAT+CGG 0.481475 3.1:-11242864 None:intergenic
TCTCTAATCAGAAATAAGAA+AGG 0.483189 3.1:-11244207 None:intergenic
CATCCCCTCGGTAGTCATGA+AGG 0.493267 3.1:-11243731 None:intergenic
AGACTATCGTGTAGTAAGTC+AGG 0.494602 3.1:-11243898 None:intergenic
CTGATTAGAGAAGATTCGAC+TGG 0.501644 3.1:+11244219 MS.gene044628:CDS
CACTCTACTTTAAAGGAGCA+TGG 0.505591 3.1:+11243635 MS.gene044628:CDS
TAGGGAAACGTTTGTTTGGT+TGG 0.507693 3.1:-11242645 None:intergenic
TCATCTACTTCTACTTCAGC+AGG 0.509971 3.1:-11243925 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.511801 3.1:+11242749 MS.gene044628:CDS
GTACTAAGCATCATCGCTGC+TGG 0.512015 3.1:+11242740 MS.gene044628:CDS
AACAGCTTCTCGACTTCCTC+CGG 0.514641 3.1:+11242783 MS.gene044628:CDS
TCCGATGCTGCTCCCACAGG+TGG 0.515601 3.1:+11242863 MS.gene044628:CDS
CTCTAATCAGAAATAAGAAA+GGG 0.516757 3.1:-11244206 None:intergenic
CATCATCGCTGCTGGCTCTG+AGG 0.516897 3.1:+11242748 MS.gene044628:CDS
GTCAAACCTCCAGGAGTGAA+AGG 0.524050 3.1:-11244024 None:intergenic
GACACGATTTCTTTGAAGGA+AGG 0.526117 3.1:-11242941 None:intergenic
TTTGGTTGGTGATTGATTCA+CGG 0.528455 3.1:-11242631 None:intergenic
CACTTGTCCAACAAAGAGAA+TGG 0.528533 3.1:-11244244 None:intergenic
ACAGATGTTTCGCAATGCAT+AGG 0.529767 3.1:-11242664 None:intergenic
GGCGAGATCGTTGAGATGAT+CGG 0.531337 3.1:-11242816 None:intergenic
TGCATTAGCAAAGATGAGCT+TGG 0.539499 3.1:-11243614 None:intergenic
GAAATCAACATAAGCCATAG+TGG 0.543010 3.1:-11242978 None:intergenic
TGCTAAGATCACTGATCAAG+AGG 0.544299 3.1:-11244273 None:intergenic
CAGATGTTTCGCAATGCATA+GGG 0.546503 3.1:-11242663 None:intergenic
ATCAATAAACTGCATCCCCT+CGG 0.550365 3.1:-11243743 None:intergenic
GATGATCGGTGGATTTGGGC+CGG 0.554595 3.1:-11242802 None:intergenic
GAAATATATTAGAAACAGAA+AGG 0.558448 3.1:-11244080 None:intergenic
AAGCTATCAACTGATCTTGG+AGG 0.569083 3.1:-11243589 None:intergenic
TTATGTTGATTTCATAACCA+AGG 0.579962 3.1:+11242988 MS.gene044628:CDS
GTCGAGAAGCTGTTGTTGTG+TGG 0.586119 3.1:-11242774 None:intergenic
TTTGAATGGAAGCTCAGTCA+AGG 0.589562 3.1:+11243705 MS.gene044628:CDS
TCGAGAAGCTGTTGTTGTGT+GGG 0.605173 3.1:-11242773 None:intergenic
ATCCCCTCGGTAGTCATGAA+GGG 0.614506 3.1:-11243730 None:intergenic
TATGTTGAAGGAGTTAGGAG+TGG 0.615125 3.1:+11243996 MS.gene044628:CDS
GGGAGCAGCATCGGAGAGCA+CGG 0.622379 3.1:-11242855 None:intergenic
GATCGGTGGATTTGGGCCGG+AGG 0.625103 3.1:-11242799 None:intergenic
GTTCCCTTCATGACTACCGA+GGG 0.628600 3.1:+11243727 MS.gene044628:CDS
GAGAGTCGAGGTCCACCTGT+GGG 0.635303 3.1:-11242875 None:intergenic
TAATCAGAAATAAGAAAGGG+TGG 0.640706 3.1:-11244203 None:intergenic
CAAAGATGGACTGTTAGCAT+TGG 0.645848 3.1:+11243855 MS.gene044628:CDS
GGAGAGTCGAGGTCCACCTG+TGG 0.645915 3.1:-11242876 None:intergenic
AACCCATACACCATTAACAA+AGG 0.653670 3.1:-11242897 None:intergenic
AATCGTGTCTTCTAATTACG+AGG 0.667058 3.1:+11242955 MS.gene044628:CDS
CACGGTAGAAACAAGCCGAG+AGG 0.667491 3.1:-11242837 None:intergenic
GGTTCCCTTCATGACTACCG+AGG 0.692485 3.1:+11243726 MS.gene044628:CDS
CCATTAACAAAGGAGAGTCG+AGG 0.698808 3.1:-11242887 None:intergenic
AGTACAACTTGAAGAGACAG+TGG 0.716234 3.1:-11242722 None:intergenic
GAGATCGTTGAGATGATCGG+TGG 0.721163 3.1:-11242813 None:intergenic
TTCCCTTCATGACTACCGAG+GGG 0.739663 3.1:+11243728 MS.gene044628:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATAGTTATGATATATT+TGG + chr3.1:11243238-11243257 MS.gene044628:intron 15.0%
!!! ATGGATTTTTAAATTTGATA+TGG + chr3.1:11243486-11243505 MS.gene044628:intron 15.0%
!!! TAAATTTGATATGGTTTTAA+AGG + chr3.1:11243495-11243514 MS.gene044628:intron 15.0%
!! GAAATATATTAGAAACAGAA+AGG - chr3.1:11244083-11244102 None:intergenic 20.0%
!! GTATCATATAAACATCTTAT+TGG - chr3.1:11243330-11243349 None:intergenic 20.0%
!! TAGTTATGATATATTTGGAT+TGG + chr3.1:11243243-11243262 MS.gene044628:intron 20.0%
!! TATCATAACTATTTGATTGA+TGG - chr3.1:11243234-11243253 None:intergenic 20.0%
!! TTCATTGAAGTAAATGAAAA+AGG + chr3.1:11244111-11244130 MS.gene044628:CDS 20.0%
!!! AAATTTTGAATCTTGGAATT+CGG - chr3.1:11243954-11243973 None:intergenic 20.0%
!!! AATAACATTTGCTGTAAATT+AGG - chr3.1:11243048-11243067 None:intergenic 20.0%
!!! ATTTAAAAATCCATTAGCTT+TGG - chr3.1:11243480-11243499 None:intergenic 20.0%
!!! TCATATGAAATTTTGAATCT+TGG - chr3.1:11243961-11243980 None:intergenic 20.0%
! AGTTATAAGTATAATGCTCT+TGG + chr3.1:11243111-11243130 MS.gene044628:intron 25.0%
! ATTAGGATATGAATTGAAAG+AGG - chr3.1:11243031-11243050 None:intergenic 25.0%
! ATTGGTATATAGTATAATGG+AGG + chr3.1:11243261-11243280 MS.gene044628:intron 25.0%
! CAATTAGTATTTAGAAGCTT+TGG - chr3.1:11243352-11243371 None:intergenic 25.0%
! CTCTAATCAGAAATAAGAAA+GGG - chr3.1:11244209-11244228 None:intergenic 25.0%
! GACTAAAGAAGTGAATTTAT+GGG + chr3.1:11243528-11243547 MS.gene044628:CDS 25.0%
! TCTCTAATCAGAAATAAGAA+AGG - chr3.1:11244210-11244229 None:intergenic 25.0%
! TGACTAAAGAAGTGAATTTA+TGG + chr3.1:11243527-11243546 MS.gene044628:CDS 25.0%
! TTAGGATATGAATTGAAAGA+GGG - chr3.1:11243030-11243049 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr3.1:11243691-11243710 MS.gene044628:CDS 25.0%
!! TTGGTATATAGTATAATGGA+GGG + chr3.1:11243262-11243281 MS.gene044628:intron 25.0%
!!! TGGATTGGTATATAGTATAA+TGG + chr3.1:11243258-11243277 MS.gene044628:intron 25.0%
!!! TTATGTTGATTTCATAACCA+AGG + chr3.1:11242988-11243007 MS.gene044628:CDS 25.0%
CTTCGTCTTCTTTATAAGAA+AGG + chr3.1:11243787-11243806 MS.gene044628:CDS 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - chr3.1:11243573-11243592 None:intergenic 30.0%
GTATGTCCATCTTGTATATT+TGG + chr3.1:11243401-11243420 MS.gene044628:intron 30.0%
GTTTATTTCAGCACAAAGTA+GGG + chr3.1:11243371-11243390 MS.gene044628:intron 30.0%
TAATCAGAAATAAGAAAGGG+TGG - chr3.1:11244206-11244225 None:intergenic 30.0%
TAGGATATGAATTGAAAGAG+GGG - chr3.1:11243029-11243048 None:intergenic 30.0%
TCGATAATTACCAAAGCTAA+TGG + chr3.1:11243467-11243486 MS.gene044628:intron 30.0%
TGAAACTTCTCATATGTTGA+AGG + chr3.1:11243984-11244003 MS.gene044628:CDS 30.0%
TGTTTATTTCAGCACAAAGT+AGG + chr3.1:11243370-11243389 MS.gene044628:intron 30.0%
! AGAGTAGGTTCTTCTTTTAA+AGG + chr3.1:11243167-11243186 MS.gene044628:intron 30.0%
! TGGTATATAGTATAATGGAG+GGG + chr3.1:11243263-11243282 MS.gene044628:intron 30.0%
AACCCATACACCATTAACAA+AGG - chr3.1:11242900-11242919 None:intergenic 35.0%
AATCGTGTCTTCTAATTACG+AGG + chr3.1:11242955-11242974 MS.gene044628:CDS 35.0%
ACACCTCCAAATATACAAGA+TGG - chr3.1:11243410-11243429 None:intergenic 35.0%
AGAAGACACGATTTCTTTGA+AGG - chr3.1:11242948-11242967 None:intergenic 35.0%
AGGATGAAGTGTATGATTCA+TGG + chr3.1:11243187-11243206 MS.gene044628:intron 35.0%
CTCCTTTGTTAATGGTGTAT+GGG + chr3.1:11242895-11242914 MS.gene044628:CDS 35.0%
GAAATCAACATAAGCCATAG+TGG - chr3.1:11242981-11243000 None:intergenic 35.0%
GCTAATGCACTCTACTTTAA+AGG + chr3.1:11243628-11243647 MS.gene044628:CDS 35.0%
GGAGGGGAATGAAATTATTT+GGG + chr3.1:11243279-11243298 MS.gene044628:intron 35.0%
GTTAAGCTATCAACTGATCT+TGG - chr3.1:11243595-11243614 None:intergenic 35.0%
TCTCATATGTTGAAGGAGTT+AGG + chr3.1:11243991-11244010 MS.gene044628:CDS 35.0%
TCTCCTTTGTTAATGGTGTA+TGG + chr3.1:11242894-11242913 MS.gene044628:CDS 35.0%
TGGAGGGGAATGAAATTATT+TGG + chr3.1:11243278-11243297 MS.gene044628:intron 35.0%
TGTCCATCTTGTATATTTGG+AGG + chr3.1:11243404-11243423 MS.gene044628:intron 35.0%
!! CTGATTCTAGTTTAGAGAGT+AGG + chr3.1:11243152-11243171 MS.gene044628:intron 35.0%
!! TTTGGTTGGTGATTGATTCA+CGG - chr3.1:11242634-11242653 None:intergenic 35.0%
AAGCTATCAACTGATCTTGG+AGG - chr3.1:11243592-11243611 None:intergenic 40.0%
ACAGATGTTTCGCAATGCAT+AGG - chr3.1:11242667-11242686 None:intergenic 40.0%
ACTGGAACCATTCTCTTTGT+TGG + chr3.1:11244237-11244256 MS.gene044628:CDS 40.0%
AGACTATCGTGTAGTAAGTC+AGG - chr3.1:11243901-11243920 None:intergenic 40.0%
AGTACAACTTGAAGAGACAG+TGG - chr3.1:11242725-11242744 None:intergenic 40.0%
ATCAATAAACTGCATCCCCT+CGG - chr3.1:11243746-11243765 None:intergenic 40.0%
CAATGCTAACAGTCCATCTT+TGG - chr3.1:11243857-11243876 None:intergenic 40.0%
CACTTGTCCAACAAAGAGAA+TGG - chr3.1:11244247-11244266 None:intergenic 40.0%
CAGATGTTTCGCAATGCATA+GGG - chr3.1:11242666-11242685 None:intergenic 40.0%
CTGATTAGAGAAGATTCGAC+TGG + chr3.1:11244219-11244238 MS.gene044628:CDS 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - chr3.1:11242930-11242949 None:intergenic 40.0%
GATATGAATTGAAAGAGGGG+AGG - chr3.1:11243026-11243045 None:intergenic 40.0%
GGAATCAGACGTTTGATGTA+TGG + chr3.1:11243656-11243675 MS.gene044628:CDS 40.0%
TAGGGAAACGTTTGTTTGGT+TGG - chr3.1:11242648-11242667 None:intergenic 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + chr3.1:11243996-11244015 MS.gene044628:CDS 40.0%
TCATCTACTTCTACTTCAGC+AGG - chr3.1:11243928-11243947 None:intergenic 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + chr3.1:11244032-11244051 MS.gene044628:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - chr3.1:11242931-11242950 None:intergenic 40.0%
TGACTGAGCTTCCATTCAAA+AGG - chr3.1:11243705-11243724 None:intergenic 40.0%
TGCATAGGGAAACGTTTGTT+TGG - chr3.1:11242652-11242671 None:intergenic 40.0%
TGCATTAGCAAAGATGAGCT+TGG - chr3.1:11243617-11243636 None:intergenic 40.0%
TGGAGGTTTGACAAAAATGG+TGG + chr3.1:11244035-11244054 MS.gene044628:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + chr3.1:11243547-11243566 MS.gene044628:CDS 40.0%
TTCTAATTACGAGGCCACTA+TGG + chr3.1:11242964-11242983 MS.gene044628:CDS 40.0%
TTTCTTCCAGATGCCAAAGA+TGG + chr3.1:11243841-11243860 MS.gene044628:CDS 40.0%
TTTGAATGGAAGCTCAGTCA+AGG + chr3.1:11243705-11243724 MS.gene044628:CDS 40.0%
! CACTCTACTTTAAAGGAGCA+TGG + chr3.1:11243635-11243654 MS.gene044628:CDS 40.0%
! GACACGATTTCTTTGAAGGA+AGG - chr3.1:11242944-11242963 None:intergenic 40.0%
! GGAGGTATACAAACATACCT+TGG - chr3.1:11243008-11243027 None:intergenic 40.0%
! TTGAGATGATCGGTGGATTT+GGG - chr3.1:11242809-11242828 None:intergenic 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - chr3.1:11244036-11244055 None:intergenic 40.0%
!! CAAAGATGGACTGTTAGCAT+TGG + chr3.1:11243855-11243874 MS.gene044628:CDS 40.0%
AACAGTCCATCTTTGGCATC+TGG - chr3.1:11243850-11243869 None:intergenic 45.0%
CCATTAACAAAGGAGAGTCG+AGG - chr3.1:11242890-11242909 None:intergenic 45.0%
CCTCGACTCTCCTTTGTTAA+TGG + chr3.1:11242887-11242906 MS.gene044628:CDS 45.0%
TCGAGAAGCTGTTGTTGTGT+GGG - chr3.1:11242776-11242795 None:intergenic 45.0%
! GTTGAGATGATCGGTGGATT+TGG - chr3.1:11242810-11242829 None:intergenic 45.0%
! GTTTTACCTTTCACTCCTGG+AGG + chr3.1:11244018-11244037 MS.gene044628:CDS 45.0%
!! AGATGGACTGTTAGCATTGG+TGG + chr3.1:11243858-11243877 MS.gene044628:CDS 45.0%
!! GTGGTTTTACCTTTCACTCC+TGG + chr3.1:11244015-11244034 MS.gene044628:CDS 45.0%
!! GTTAGCATTGGTGGAGAAGT+TGG + chr3.1:11243867-11243886 MS.gene044628:CDS 45.0%
AACAGCTTCTCGACTTCCTC+CGG + chr3.1:11242783-11242802 MS.gene044628:CDS 50.0%
ATCCCCTCGGTAGTCATGAA+GGG - chr3.1:11243733-11243752 None:intergenic 50.0%
ATCTCAACGATCTCGCCTCT+CGG + chr3.1:11242822-11242841 MS.gene044628:CDS 50.0%
GAGATCGTTGAGATGATCGG+TGG - chr3.1:11242816-11242835 None:intergenic 50.0%
GGCGAGATCGTTGAGATGAT+CGG - chr3.1:11242819-11242838 None:intergenic 50.0%
GTACTAAGCATCATCGCTGC+TGG + chr3.1:11242740-11242759 MS.gene044628:CDS 50.0%
GTCAAACCTCCAGGAGTGAA+AGG - chr3.1:11244027-11244046 None:intergenic 50.0%
GTCGAGAAGCTGTTGTTGTG+TGG - chr3.1:11242777-11242796 None:intergenic 50.0%
GTTCCCTTCATGACTACCGA+GGG + chr3.1:11243727-11243746 MS.gene044628:CDS 50.0%
TTCCCTTCATGACTACCGAG+GGG + chr3.1:11243728-11243747 MS.gene044628:CDS 50.0%
CACGGTAGAAACAAGCCGAG+AGG - chr3.1:11242840-11242859 None:intergenic 55.0%
CATCCCCTCGGTAGTCATGA+AGG - chr3.1:11243734-11243753 None:intergenic 55.0%
GGTTCCCTTCATGACTACCG+AGG + chr3.1:11243726-11243745 MS.gene044628:CDS 55.0%
! GATGATCGGTGGATTTGGGC+CGG - chr3.1:11242805-11242824 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG + chr3.1:11242749-11242768 MS.gene044628:CDS 55.0%
GAAGCTGCTGCAGCTAGTGC+TGG + chr3.1:11244138-11244157 MS.gene044628:CDS 60.0%
GAGAGTCGAGGTCCACCTGT+GGG - chr3.1:11242878-11242897 None:intergenic 60.0%
TCCACCTGTGGGAGCAGCAT+CGG - chr3.1:11242867-11242886 None:intergenic 60.0%
!! CATCATCGCTGCTGGCTCTG+AGG + chr3.1:11242748-11242767 MS.gene044628:CDS 60.0%
CTCTCCGATGCTGCTCCCAC+AGG + chr3.1:11242860-11242879 MS.gene044628:CDS 65.0%
GGAGAGTCGAGGTCCACCTG+TGG - chr3.1:11242879-11242898 None:intergenic 65.0%
TCCGATGCTGCTCCCACAGG+TGG + chr3.1:11242863-11242882 MS.gene044628:CDS 65.0%
! GATCGGTGGATTTGGGCCGG+AGG - chr3.1:11242802-11242821 None:intergenic 65.0%
! GGGAGCAGCATCGGAGAGCA+CGG - chr3.1:11242858-11242877 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 11242623 11244287 11242623 ID=MS.gene044628
chr3.1 mRNA 11242623 11244287 11242623 ID=MS.gene044628.t1;Parent=MS.gene044628
chr3.1 exon 11242623 11243009 11242623 ID=MS.gene044628.t1.exon1;Parent=MS.gene044628.t1
chr3.1 CDS 11242623 11243009 11242623 ID=cds.MS.gene044628.t1;Parent=MS.gene044628.t1
chr3.1 exon 11243517 11244287 11243517 ID=MS.gene044628.t1.exon2;Parent=MS.gene044628.t1
chr3.1 CDS 11243517 11244287 11243517 ID=cds.MS.gene044628.t1;Parent=MS.gene044628.t1
Gene Sequence

>MS.gene044628

ATGGCTCTCCGTGAATCAATCACCAACCAAACAAACGTTTCCCTATGCATTGCGAAACATCTGTTCTTGAAAGAATCAGACAAGAACATTGTGTTTTCGCCACTGTCTCTTCAAGTTGTACTAAGCATCATCGCTGCTGGCTCTGAGGGTCCCACACAACAACAGCTTCTCGACTTCCTCCGGCCCAAATCCACCGATCATCTCAACGATCTCGCCTCTCGGCTTGTTTCTACCGTGCTCTCCGATGCTGCTCCCACAGGTGGACCTCGACTCTCCTTTGTTAATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAAGAAATCGTGTCTTCTAATTACGAGGCCACTATGGCTTATGTTGATTTCATAACCAAGGTATGTTTGTATACCTCCCCTCTTTCAATTCATATCCTAATTTACAGCAAATGTTATTTTACTTTTGAAGCATAGATAACTTTTGTGTGCTCTTCACTTATAGTTATAAGTATAATGCTCTTGGAATTTTTTTGACAGTGCTCTGATTCTAGTTTAGAGAGTAGGTTCTTCTTTTAAAGGATGAAGTGTATGATTCATGGATATATCAAATCATTCAACTACCATCAATCAAATAGTTATGATATATTTGGATTGGTATATAGTATAATGGAGGGGAATGAAATTATTTGGGATAACATCAATTTTCTGAAAACATGCCAATAAGATGTTTATATGATACCAAAGCTTCTAAATACTAATTGTTTATTTCAGCACAAAGTAGGGTTATAATGTATGTCCATCTTGTATATTTGGAGGTGTGAATTACTTTATATTTTGATAGTACAACTTCATGACTTCGATAATTACCAAAGCTAATGGATTTTTAAATTTGATATGGTTTTAAAGGCTGTTGAAGTGACTAAAGAAGTGAATTTATGGGCTGAAAAAGAGACAAATGGCCTTATTAAAGAACTTCTTCCTCCAAGATCAGTTGATAGCTTAACCAAGCTCATCTTTGCTAATGCACTCTACTTTAAAGGAGCATGGAATCAGACGTTTGATGTATGGAAAACGAAAGACTATGATTTTCACCTTTTGAATGGAAGCTCAGTCAAGGTTCCCTTCATGACTACCGAGGGGATGCAGTTTATTGATGAATACTATGATTATAAAGTTCTTCGTCTTCTTTATAAGAAAGGCGTAGACAAACGTCAATTTTCTATGTACATTTTTCTTCCAGATGCCAAAGATGGACTGTTAGCATTGGTGGAGAAGTTGGCATCTGAACCTGACTTACTACACGATAGTCTTCGTCCTGCTGAAGTAGAAGTAGATGAATTCCGAATTCCAAGATTCAAAATTTCATATGAGCTTGAAACTTCTCATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCACTCCTGGAGGTTTGACAAAAATGGTGGACTCTTCTCTTGTGAGTGATAGCCTTTCTGTTTCTAATATATTTCACAAATCTTTCATTGAAGTAAATGAAAAAGGCACTGAAGCTGCTGCAGCTAGTGCTGGAGACTGTGACGCTGAGTGTGTCGCGATAGACTTTGTAGCTGACCACCCTTTCTTATTTCTGATTAGAGAAGATTCGACTGGAACCATTCTCTTTGTTGGACAAGTGCTCAATCCTCTTGATCAGTGA

Protein sequence

>MS.gene044628.t1

MALRESITNQTNVSLCIAKHLFLKESDKNIVFSPLSLQVVLSIIAAGSEGPTQQQLLDFLRPKSTDHLNDLASRLVSTVLSDAAPTGGPRLSFVNGVWVEQTLSLQPSFKEIVSSNYEATMAYVDFITKAVEVTKEVNLWAEKETNGLIKELLPPRSVDSLTKLIFANALYFKGAWNQTFDVWKTKDYDFHLLNGSSVKVPFMTTEGMQFIDEYYDYKVLRLLYKKGVDKRQFSMYIFLPDAKDGLLALVEKLASEPDLLHDSLRPAEVEVDEFRIPRFKISYELETSHMLKELGVVLPFTPGGLTKMVDSSLVSDSLSVSNIFHKSFIEVNEKGTEAAAASAGDCDAECVAIDFVADHPFLFLIREDSTGTILFVGQVLNPLDQ