Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044629.t1 | RHN65795.1 | 80.1 | 396 | 76 | 1 | 1 | 393 | 46 | 441 | 2.50E-168 | 601.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044629.t1 | Q9S7T8 | 52.6 | 388 | 177 | 3 | 11 | 391 | 3 | 390 | 2.0e-110 | 400.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044629.t1 | A0A396IPH6 | 80.1 | 396 | 76 | 1 | 1 | 393 | 46 | 441 | 1.8e-168 | 601.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044629 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene044629 | PPI |
| MS.gene065945 | MS.gene044629 | PPI |
| MS.gene031697 | MS.gene044629 | PPI |
| MS.gene044629 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044629.t1 | MTR_3g018740 | 81.347 | 386 | 69 | 1 | 11 | 393 | 3 | 388 | 0.0 | 617 |
| MS.gene044629.t1 | MTR_3g101010 | 72.539 | 386 | 100 | 2 | 11 | 391 | 3 | 387 | 0.0 | 533 |
| MS.gene044629.t1 | MTR_4g045707 | 66.841 | 383 | 123 | 2 | 12 | 391 | 5 | 386 | 1.48e-179 | 504 |
| MS.gene044629.t1 | MTR_8g027395 | 66.752 | 391 | 126 | 3 | 3 | 391 | 7 | 395 | 2.06e-179 | 504 |
| MS.gene044629.t1 | MTR_2g045980 | 66.923 | 390 | 118 | 4 | 11 | 393 | 3 | 388 | 2.79e-177 | 499 |
| MS.gene044629.t1 | MTR_2g046030 | 65.897 | 390 | 122 | 4 | 11 | 393 | 3 | 388 | 1.56e-175 | 494 |
| MS.gene044629.t1 | MTR_8g027420 | 66.057 | 383 | 115 | 4 | 11 | 391 | 4 | 373 | 2.59e-171 | 483 |
| MS.gene044629.t1 | MTR_8g461160 | 65.385 | 390 | 125 | 4 | 13 | 393 | 6 | 394 | 1.18e-170 | 482 |
| MS.gene044629.t1 | MTR_3g101180 | 63.797 | 395 | 125 | 6 | 13 | 391 | 6 | 398 | 7.91e-170 | 480 |
| MS.gene044629.t1 | MTR_3g101030 | 63.980 | 397 | 117 | 5 | 18 | 391 | 34 | 427 | 1.98e-168 | 478 |
| MS.gene044629.t1 | MTR_3g048000 | 62.467 | 381 | 122 | 4 | 14 | 391 | 28 | 390 | 1.63e-166 | 472 |
| MS.gene044629.t1 | MTR_4g088525 | 66.111 | 360 | 120 | 2 | 33 | 391 | 9 | 367 | 4.20e-166 | 470 |
| MS.gene044629.t1 | MTR_7g050810 | 60.500 | 400 | 145 | 4 | 5 | 392 | 5 | 403 | 3.13e-165 | 469 |
| MS.gene044629.t1 | MTR_7g451890 | 59.148 | 399 | 153 | 3 | 3 | 392 | 4 | 401 | 6.14e-165 | 468 |
| MS.gene044629.t1 | MTR_7g047780 | 59.900 | 399 | 150 | 4 | 3 | 392 | 4 | 401 | 3.66e-162 | 461 |
| MS.gene044629.t1 | MTR_4g088535 | 65.344 | 378 | 111 | 5 | 13 | 388 | 7 | 366 | 1.77e-161 | 459 |
| MS.gene044629.t1 | MTR_3g101130 | 61.598 | 388 | 136 | 5 | 12 | 391 | 5 | 387 | 6.98e-161 | 457 |
| MS.gene044629.t1 | MTR_7g050750 | 59.439 | 392 | 149 | 3 | 10 | 392 | 5 | 395 | 1.38e-159 | 454 |
| MS.gene044629.t1 | MTR_3g015620 | 60.459 | 392 | 121 | 5 | 10 | 392 | 13 | 379 | 3.49e-150 | 430 |
| MS.gene044629.t1 | MTR_3g101050 | 63.613 | 382 | 114 | 7 | 17 | 391 | 33 | 396 | 2.07e-149 | 429 |
| MS.gene044629.t1 | MTR_3g102920 | 54.146 | 410 | 130 | 8 | 4 | 391 | 35 | 408 | 2.36e-133 | 388 |
| MS.gene044629.t1 | MTR_3g101190 | 55.906 | 381 | 95 | 6 | 11 | 391 | 3 | 310 | 3.41e-132 | 382 |
| MS.gene044629.t1 | MTR_3g018747 | 72.031 | 261 | 55 | 2 | 137 | 393 | 9 | 255 | 6.70e-125 | 361 |
| MS.gene044629.t1 | MTR_3g101200 | 51.015 | 394 | 160 | 5 | 5 | 391 | 23 | 390 | 7.28e-119 | 350 |
| MS.gene044629.t1 | MTR_3g100995 | 65.613 | 253 | 80 | 2 | 144 | 392 | 14 | 263 | 9.01e-112 | 328 |
| MS.gene044629.t1 | MTR_3g100010 | 57.372 | 312 | 85 | 3 | 36 | 314 | 40 | 336 | 1.13e-109 | 325 |
| MS.gene044629.t1 | MTR_7g050830 | 52.160 | 324 | 122 | 3 | 3 | 304 | 6 | 318 | 1.61e-108 | 322 |
| MS.gene044629.t1 | MTR_3g015760 | 60.289 | 277 | 100 | 3 | 122 | 392 | 8 | 280 | 9.73e-102 | 303 |
| MS.gene044629.t1 | MTR_3g111160 | 67.273 | 220 | 64 | 3 | 178 | 391 | 1 | 218 | 2.55e-93 | 279 |
| MS.gene044629.t1 | MTR_3g114310 | 41.730 | 393 | 208 | 11 | 14 | 390 | 20 | 407 | 2.37e-85 | 266 |
| MS.gene044629.t1 | MTR_3g100520 | 63.426 | 216 | 68 | 3 | 178 | 391 | 1 | 207 | 3.52e-85 | 258 |
| MS.gene044629.t1 | MTR_3g101110 | 55.212 | 259 | 80 | 4 | 117 | 367 | 50 | 280 | 1.91e-81 | 251 |
| MS.gene044629.t1 | MTR_2g046410 | 63.768 | 207 | 67 | 3 | 194 | 393 | 144 | 349 | 8.74e-81 | 252 |
| MS.gene044629.t1 | MTR_3g099970 | 59.391 | 197 | 62 | 2 | 137 | 333 | 20 | 198 | 9.65e-72 | 223 |
| MS.gene044629.t1 | MTR_3g111150 | 59.887 | 177 | 47 | 1 | 15 | 191 | 1 | 153 | 4.97e-66 | 207 |
| MS.gene044629.t1 | MTR_3g101150 | 64.557 | 158 | 46 | 2 | 243 | 391 | 1 | 157 | 1.40e-61 | 196 |
| MS.gene044629.t1 | MTR_3g102870 | 59.394 | 165 | 61 | 2 | 200 | 359 | 1 | 164 | 2.64e-57 | 185 |
| MS.gene044629.t1 | MTR_3g101020 | 54.839 | 186 | 53 | 2 | 211 | 392 | 1 | 159 | 1.08e-55 | 181 |
| MS.gene044629.t1 | MTR_3g100990 | 70.635 | 126 | 37 | 0 | 12 | 137 | 4 | 129 | 2.26e-53 | 185 |
| MS.gene044629.t1 | MTR_4g093550 | 64.773 | 88 | 31 | 0 | 9 | 96 | 2 | 89 | 2.91e-30 | 112 |
| MS.gene044629.t1 | MTR_6g046890 | 74.194 | 62 | 16 | 0 | 32 | 93 | 18 | 79 | 1.07e-23 | 95.9 |
| MS.gene044629.t1 | MTR_3g101140 | 61.194 | 67 | 20 | 1 | 331 | 391 | 48 | 114 | 4.05e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044629.t1 | AT1G47710 | 52.577 | 388 | 177 | 3 | 11 | 391 | 3 | 390 | 3.38e-143 | 412 |
| MS.gene044629.t1 | AT1G47710 | 52.577 | 388 | 177 | 3 | 11 | 391 | 30 | 417 | 1.83e-142 | 412 |
| MS.gene044629.t1 | AT3G45220 | 49.616 | 391 | 183 | 7 | 11 | 390 | 3 | 390 | 2.35e-127 | 372 |
| MS.gene044629.t1 | AT2G25240 | 50.259 | 386 | 180 | 6 | 11 | 390 | 3 | 382 | 7.79e-124 | 363 |
| MS.gene044629.t1 | AT2G26390 | 48.985 | 394 | 177 | 7 | 11 | 390 | 3 | 386 | 1.10e-121 | 358 |
| MS.gene044629.t1 | AT2G14540 | 42.317 | 397 | 196 | 7 | 4 | 390 | 24 | 397 | 1.97e-95 | 291 |
| MS.gene044629.t1 | AT1G64030 | 42.711 | 391 | 191 | 6 | 11 | 390 | 3 | 371 | 2.39e-95 | 290 |
| MS.gene044629.t1 | AT1G62170 | 41.795 | 390 | 191 | 8 | 13 | 390 | 66 | 431 | 4.03e-94 | 289 |
| MS.gene044629.t1 | AT2G35580 | 42.455 | 391 | 178 | 9 | 11 | 390 | 17 | 371 | 1.46e-92 | 283 |
| MS.gene044629.t1 | AT1G62170 | 38.534 | 423 | 191 | 9 | 13 | 390 | 66 | 464 | 8.29e-87 | 271 |
| MS.gene044629.t1 | AT1G64010 | 46.083 | 217 | 91 | 4 | 178 | 390 | 1 | 195 | 3.63e-56 | 183 |
| MS.gene044629.t1 | AT1G64010 | 44.554 | 202 | 86 | 4 | 193 | 390 | 2 | 181 | 1.02e-47 | 161 |
| MS.gene044629.t1 | AT1G62160 | 41.243 | 177 | 81 | 7 | 217 | 390 | 62 | 218 | 5.21e-31 | 118 |
| MS.gene044629.t1 | AT1G63280 | 49.153 | 118 | 56 | 2 | 134 | 249 | 5 | 120 | 4.96e-29 | 109 |
| MS.gene044629.t1 | AT1G51330 | 49.558 | 113 | 52 | 2 | 135 | 243 | 29 | 140 | 6.99e-25 | 100 |
| MS.gene044629.t1 | AT1G64020 | 35.714 | 112 | 69 | 3 | 18 | 127 | 10 | 120 | 1.23e-14 | 70.5 |
Find 74 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGCACTCTACTTTAA+AGG | 0.124495 | 3.1:+11250045 | MS.gene044629:CDS |
| CAATGATACTTAGCACAATT+TGG | 0.212116 | 3.1:-11249119 | None:intergenic |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.1:+11249944 | MS.gene044629:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11249987 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3.1:-11249352 | None:intergenic |
| TCTCCTTTGTCAATGGTGTA+TGG | 0.329536 | 3.1:+11249280 | MS.gene044629:CDS |
| AACAGTCCGTCTTTGGCATT+TGG | 0.339966 | 3.1:-11250264 | None:intergenic |
| GTTGATTCATCTACTGATCT+TGG | 0.347636 | 3.1:-11250009 | None:intergenic |
| CAATGCTAACAGTCCGTCTT+TGG | 0.349879 | 3.1:-11250271 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.1:+11250654 | MS.gene044629:CDS |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.1:+11249945 | MS.gene044629:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.1:+11250408 | MS.gene044629:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.1:-11249314 | None:intergenic |
| TTCCGAGGGAAACATTTGTT+TGG | 0.414347 | 3.1:-11249035 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.1:+11250401 | MS.gene044629:CDS |
| TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3.1:-11249061 | None:intergenic |
| CTCCTTTGTCAATGGTGTAT+GGG | 0.438426 | 3.1:+11249281 | MS.gene044629:CDS |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.1:+11249246 | MS.gene044629:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.1:-11249313 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.1:+11250528 | MS.gene044629:CDS |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3.1:+11250284 | MS.gene044629:CDS |
| CCTCGACTCTCCTTTGTCAA+TGG | 0.460604 | 3.1:+11249273 | MS.gene044629:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.1:+11250555 | MS.gene044629:CDS |
| GACTCTTCTCTTGTGAGTGA+TGG | 0.470067 | 3.1:+11250474 | MS.gene044629:CDS |
| AGACGGACTGTTAGCATTGG+TGG | 0.477068 | 3.1:+11250275 | MS.gene044629:CDS |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.1:-11249250 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.1:-11250624 | None:intergenic |
| CTCTGTTGATTTCATCACCA+AGG | 0.493105 | 3.1:+11249374 | MS.gene044629:CDS |
| AGACTATCGTGTAGTAAGTC+AGG | 0.494602 | 3.1:-11250315 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.1:+11250636 | MS.gene044629:CDS |
| GTGCTAAGTATCATTGCTGC+TGG | 0.503595 | 3.1:+11249126 | MS.gene044629:CDS |
| CTTCGTCTTCTTTATAAGCA+AGG | 0.507669 | 3.1:+11250204 | MS.gene044629:CDS |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3.1:-11250342 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.1:+11250052 | MS.gene044629:CDS |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.1:+11249249 | MS.gene044629:CDS |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.1:-11250623 | None:intergenic |
| TGCTAAGATCATTGATCAAG+AGG | 0.517318 | 3.1:-11250690 | None:intergenic |
| CATCCCCTCAGTAGTCATGA+AGG | 0.522274 | 3.1:-11250148 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.1:-11250441 | None:intergenic |
| ATCATTGCTGCTGGTTGTGA+GGG | 0.524742 | 3.1:+11249135 | MS.gene044629:CDS |
| GAGGGAAACATTTGTTTGGT+TGG | 0.526730 | 3.1:-11249031 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.530661 | 3.1:-11250661 | None:intergenic |
| TATCATTGCTGCTGGTTGTG+AGG | 0.533458 | 3.1:+11249134 | MS.gene044629:CDS |
| TCTGAATGGCAGCTCGGTCA+AGG | 0.533918 | 3.1:+11250122 | MS.gene044629:CDS |
| GATGATCTGTGGATTTCGAC+TGG | 0.558312 | 3.1:-11249188 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.1:-11250497 | None:intergenic |
| TCACCTTCTGAATGGCAGCT+CGG | 0.561657 | 3.1:+11250116 | MS.gene044629:CDS |
| TTTCTTCCAAATGCCAAAGA+CGG | 0.563068 | 3.1:+11250258 | MS.gene044629:CDS |
| AACAAATGTTTCCCTCGGAA+TGG | 0.567655 | 3.1:+11249038 | MS.gene044629:CDS |
| GATTCATCTACTGATCTTGG+AGG | 0.568404 | 3.1:-11250006 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3.1:+11249033 | MS.gene044629:CDS |
| GTCGAGAAGTTGTTGTTGTG+TGG | 0.584401 | 3.1:-11249160 | None:intergenic |
| CAGATGTTTGGCCATTCCGA+GGG | 0.585213 | 3.1:-11249049 | None:intergenic |
| ACAGATGTTTGGCCATTCCG+AGG | 0.588852 | 3.1:-11249050 | None:intergenic |
| TGCATTAGTAAAGATGAGCC+TGG | 0.591361 | 3.1:-11250031 | None:intergenic |
| CAAAGACGGACTGTTAGCAT+TGG | 0.595410 | 3.1:+11250272 | MS.gene044629:CDS |
| TTTGGTTGGTGATTGATTCG+CGG | 0.599786 | 3.1:-11249017 | None:intergenic |
| TGACCGAGCTGCCATTCAGA+AGG | 0.601435 | 3.1:-11250119 | None:intergenic |
| AGCACAATTTGGATTGACAA+CGG | 0.608429 | 3.1:-11249108 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.1:+11250413 | MS.gene044629:CDS |
| GTTCCCTTCATGACTACTGA+GGG | 0.617001 | 3.1:+11250144 | MS.gene044629:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11249261 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.1:-11250620 | None:intergenic |
| ATCCCCTCAGTAGTCATGAA+GGG | 0.642828 | 3.1:-11250147 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11249262 | None:intergenic |
| AACCCATACACCATTGACAA+AGG | 0.645992 | 3.1:-11249283 | None:intergenic |
| GAGATAGTTGAGATGATCTG+TGG | 0.676063 | 3.1:-11249199 | None:intergenic |
| GGTTCCCTTCATGACTACTG+AGG | 0.679001 | 3.1:+11250143 | MS.gene044629:CDS |
| CACGACAGAAACAAGCTGAG+AGG | 0.687540 | 3.1:-11249223 | None:intergenic |
| GATCAGTAGATGAATCAACC+AGG | 0.703083 | 3.1:+11250013 | MS.gene044629:CDS |
| GATCTGTGGATTTCGACTGG+AGG | 0.708094 | 3.1:-11249185 | None:intergenic |
| TTCCCTTCATGACTACTGAG+GGG | 0.715192 | 3.1:+11250145 | MS.gene044629:CDS |
| CTTGGTGATGAAATCAACAG+AGG | 0.724306 | 3.1:-11249373 | None:intergenic |
| CCATTGACAAAGGAGAGTCG+AGG | 0.747113 | 3.1:-11249273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTTATTTTATTTG+AGG | - | chr3.1:11249449-11249468 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTTTGAAG+AGG | - | chr3.1:11249742-11249761 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTATTTTATTTGA+GGG | - | chr3.1:11249448-11249467 | None:intergenic | 10.0% |
| !! | ATTTCATGCTAATTAATTTA+AGG | + | chr3.1:11249479-11249498 | MS.gene044629:intron | 15.0% |
| !! | TTTCATGCTAATTAATTTAA+GGG | + | chr3.1:11249480-11249499 | MS.gene044629:intron | 15.0% |
| !!! | ATTCAAATAACTGATTTTTA+TGG | + | chr3.1:11249903-11249922 | MS.gene044629:intron | 15.0% |
| !!! | TGAAATAAAGATATATGTTT+TGG | - | chr3.1:11249600-11249619 | None:intergenic | 15.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.1:11250500-11250519 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | + | chr3.1:11249945-11249964 | MS.gene044629:CDS | 20.0% |
| !! | TAAACTAACCAGAAAATTTA+GGG | - | chr3.1:11249534-11249553 | None:intergenic | 20.0% |
| !! | TATTACGTTACTAAATTAGT+TGG | - | chr3.1:11249815-11249834 | None:intergenic | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | + | chr3.1:11249944-11249963 | MS.gene044629:CDS | 20.0% |
| !!! | AGATATATGTTTTGGTAAAT+TGG | - | chr3.1:11249592-11249611 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.1:11250378-11250397 | None:intergenic | 20.0% |
| ! | ATAGTAAAAGTTCATGACTT+TGG | + | chr3.1:11249657-11249676 | MS.gene044629:intron | 25.0% |
| ! | CTAAACTAACCAGAAAATTT+AGG | - | chr3.1:11249535-11249554 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.1:11250626-11250645 | None:intergenic | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | chr3.1:11249355-11249374 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:11250627-11250646 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:11250528-11250547 | MS.gene044629:CDS | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | - | chr3.1:11249689-11249708 | None:intergenic | 25.0% |
| !! | TAATAAAGTTTTTCGTCACA+TGG | - | chr3.1:11249715-11249734 | None:intergenic | 25.0% |
| !!! | AATTTTCTGGTTAGTTTAGT+TGG | + | chr3.1:11249536-11249555 | MS.gene044629:intron | 25.0% |
| ACTAATGCACTCTACTTTAA+AGG | + | chr3.1:11250045-11250064 | MS.gene044629:CDS | 30.0% | |
| AGACAGATTGCTGTAAAAAA+AGG | - | chr3.1:11249417-11249436 | None:intergenic | 30.0% | |
| CAATGATACTTAGCACAATT+TGG | - | chr3.1:11249122-11249141 | None:intergenic | 30.0% | |
| GACAGATTGCTGTAAAAAAA+GGG | - | chr3.1:11249416-11249435 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11249990-11250009 | None:intergenic | 30.0% | |
| GGATGCTAGAAAACAATAAA+GGG | - | chr3.1:11249794-11249813 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.1:11250623-11250642 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.1:11250401-11250420 | MS.gene044629:CDS | 30.0% | |
| TGGATGCTAGAAAACAATAA+AGG | - | chr3.1:11249795-11249814 | None:intergenic | 30.0% | |
| ! | CAGAAAATTTAGGGTATACT+AGG | - | chr3.1:11249525-11249544 | None:intergenic | 30.0% |
| ! | CTAGTATACCCTAAATTTTC+TGG | + | chr3.1:11249523-11249542 | MS.gene044629:intron | 30.0% |
| ! | CTTTATTTCAGCACAAAGTA+GGG | + | chr3.1:11249610-11249629 | MS.gene044629:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr3.1:11250108-11250127 | MS.gene044629:CDS | 30.0% |
| ! | TCTTTATTTCAGCACAAAGT+AGG | + | chr3.1:11249609-11249628 | MS.gene044629:intron | 30.0% |
| !!! | GACAAGATTTTTTTGAAGGA+AGG | - | chr3.1:11249330-11249349 | None:intergenic | 30.0% |
| !!! | GGAAGACAAGATTTTTTTGA+AGG | - | chr3.1:11249334-11249353 | None:intergenic | 30.0% |
| AACCAAACAAATGTTTCCCT+CGG | + | chr3.1:11249033-11249052 | MS.gene044629:CDS | 35.0% | |
| AGCACAATTTGGATTGACAA+CGG | - | chr3.1:11249111-11249130 | None:intergenic | 35.0% | |
| CTTCGTCTTCTTTATAAGCA+AGG | + | chr3.1:11250204-11250223 | MS.gene044629:CDS | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.1:11250408-11250427 | MS.gene044629:CDS | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.1:11249791-11249810 | None:intergenic | 35.0% | |
| TTTCTTCCAAATGCCAAAGA+CGG | + | chr3.1:11250258-11250277 | MS.gene044629:CDS | 35.0% | |
| ! | AAATTGGCATGTAGAAGCAT+TGG | - | chr3.1:11249576-11249595 | None:intergenic | 35.0% |
| ! | GTTGATTCATCTACTGATCT+TGG | - | chr3.1:11250012-11250031 | None:intergenic | 35.0% |
| AACAAATGTTTCCCTCGGAA+TGG | + | chr3.1:11249038-11249057 | MS.gene044629:CDS | 40.0% | |
| AACCCATACACCATTGACAA+AGG | - | chr3.1:11249286-11249305 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.1:11250654-11250673 | MS.gene044629:CDS | 40.0% | |
| AGACTATCGTGTAGTAAGTC+AGG | - | chr3.1:11250318-11250337 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.1:11250664-11250683 | None:intergenic | 40.0% | |
| CTCCTTTGTCAATGGTGTAT+GGG | + | chr3.1:11249281-11249300 | MS.gene044629:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.1:11250636-11250655 | MS.gene044629:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:11249316-11249335 | None:intergenic | 40.0% | |
| GAGATAGTTGAGATGATCTG+TGG | - | chr3.1:11249202-11249221 | None:intergenic | 40.0% | |
| GAGATATGTACCACAAACCT+TGG | - | chr3.1:11249394-11249413 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | chr3.1:11249034-11249053 | None:intergenic | 40.0% | |
| GATCAGTAGATGAATCAACC+AGG | + | chr3.1:11250013-11250032 | MS.gene044629:CDS | 40.0% | |
| GATTCATCTACTGATCTTGG+AGG | - | chr3.1:11250009-11250028 | None:intergenic | 40.0% | |
| GATTTCATCACCAAGGTTTG+TGG | + | chr3.1:11249381-11249400 | MS.gene044629:intron | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.1:11250413-11250432 | MS.gene044629:CDS | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | - | chr3.1:11250345-11250364 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.1:11250449-11250468 | MS.gene044629:CDS | 40.0% | |
| TCTCCTTTGTCAATGGTGTA+TGG | + | chr3.1:11249280-11249299 | MS.gene044629:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:11249317-11249336 | None:intergenic | 40.0% | |
| TGCATTAGTAAAGATGAGCC+TGG | - | chr3.1:11250034-11250053 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11250452-11250471 | MS.gene044629:CDS | 40.0% | |
| TTCCGAGGGAAACATTTGTT+TGG | - | chr3.1:11249038-11249057 | None:intergenic | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | - | chr3.1:11249064-11249083 | None:intergenic | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11250052-11250071 | MS.gene044629:CDS | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.1:11250453-11250472 | None:intergenic | 40.0% |
| !! | CTCTGTTGATTTCATCACCA+AGG | + | chr3.1:11249374-11249393 | MS.gene044629:CDS | 40.0% |
| !! | CTTGGTGATGAAATCAACAG+AGG | - | chr3.1:11249376-11249395 | None:intergenic | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+CGG | - | chr3.1:11249020-11249039 | None:intergenic | 40.0% |
| AACAGTCCGTCTTTGGCATT+TGG | - | chr3.1:11250267-11250286 | None:intergenic | 45.0% | |
| ATCCCCTCAGTAGTCATGAA+GGG | - | chr3.1:11250150-11250169 | None:intergenic | 45.0% | |
| CAATGCTAACAGTCCGTCTT+TGG | - | chr3.1:11250274-11250293 | None:intergenic | 45.0% | |
| GACTCTTCTCTTGTGAGTGA+TGG | + | chr3.1:11250474-11250493 | MS.gene044629:CDS | 45.0% | |
| GATGATCTGTGGATTTCGAC+TGG | - | chr3.1:11249191-11249210 | None:intergenic | 45.0% | |
| GTGCTAAGTATCATTGCTGC+TGG | + | chr3.1:11249126-11249145 | MS.gene044629:CDS | 45.0% | |
| GTTCCCTTCATGACTACTGA+GGG | + | chr3.1:11250144-11250163 | MS.gene044629:CDS | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.1:11249964-11249983 | MS.gene044629:CDS | 45.0% | |
| TTCCCTTCATGACTACTGAG+GGG | + | chr3.1:11250145-11250164 | MS.gene044629:CDS | 45.0% | |
| ! | ATCATTGCTGCTGGTTGTGA+GGG | + | chr3.1:11249135-11249154 | MS.gene044629:CDS | 45.0% |
| ! | GTCGAGAAGTTGTTGTTGTG+TGG | - | chr3.1:11249163-11249182 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.1:11250435-11250454 | MS.gene044629:CDS | 45.0% |
| ! | TATCATTGCTGCTGGTTGTG+AGG | + | chr3.1:11249134-11249153 | MS.gene044629:CDS | 45.0% |
| !! | CAAAGACGGACTGTTAGCAT+TGG | + | chr3.1:11250272-11250291 | MS.gene044629:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.1:11250432-11250451 | MS.gene044629:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | + | chr3.1:11250284-11250303 | MS.gene044629:CDS | 45.0% |
| ACAGATGTTTGGCCATTCCG+AGG | - | chr3.1:11249053-11249072 | None:intergenic | 50.0% | |
| CACGACAGAAACAAGCTGAG+AGG | - | chr3.1:11249226-11249245 | None:intergenic | 50.0% | |
| CAGATGTTTGGCCATTCCGA+GGG | - | chr3.1:11249052-11249071 | None:intergenic | 50.0% | |
| CATCCCCTCAGTAGTCATGA+AGG | - | chr3.1:11250151-11250170 | None:intergenic | 50.0% | |
| CCATTGACAAAGGAGAGTCG+AGG | - | chr3.1:11249276-11249295 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTTGTCAA+TGG | + | chr3.1:11249273-11249292 | MS.gene044629:CDS | 50.0% | |
| GATCTGTGGATTTCGACTGG+AGG | - | chr3.1:11249188-11249207 | None:intergenic | 50.0% | |
| GGTTCCCTTCATGACTACTG+AGG | + | chr3.1:11250143-11250162 | MS.gene044629:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.1:11250444-11250463 | None:intergenic | 50.0% | |
| TCACCTTCTGAATGGCAGCT+CGG | + | chr3.1:11250116-11250135 | MS.gene044629:CDS | 50.0% | |
| !! | AGACGGACTGTTAGCATTGG+TGG | + | chr3.1:11250275-11250294 | MS.gene044629:CDS | 50.0% |
| TCTGAATGGCAGCTCGGTCA+AGG | + | chr3.1:11250122-11250141 | MS.gene044629:CDS | 55.0% | |
| TGACCGAGCTGCCATTCAGA+AGG | - | chr3.1:11250122-11250141 | None:intergenic | 55.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.1:11250555-11250574 | MS.gene044629:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11249264-11249283 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.1:11249253-11249272 | None:intergenic | 60.0% | |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.1:11249246-11249265 | MS.gene044629:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11249265-11249284 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.1:11249249-11249268 | MS.gene044629:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 11248985 | 11250704 | 11248985 | ID=MS.gene044629 |
| chr3.1 | mRNA | 11248985 | 11250704 | 11248985 | ID=MS.gene044629.t1;Parent=MS.gene044629 |
| chr3.1 | exon | 11248985 | 11249395 | 11248985 | ID=MS.gene044629.t1.exon1;Parent=MS.gene044629.t1 |
| chr3.1 | CDS | 11248985 | 11249395 | 11248985 | ID=cds.MS.gene044629.t1;Parent=MS.gene044629.t1 |
| chr3.1 | exon | 11249934 | 11250704 | 11249934 | ID=MS.gene044629.t1.exon2;Parent=MS.gene044629.t1 |
| chr3.1 | CDS | 11249934 | 11250704 | 11249934 | ID=cds.MS.gene044629.t1;Parent=MS.gene044629.t1 |
| Gene Sequence |
| Protein sequence |
