Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044630.t1 | RHN65795.1 | 85.6 | 389 | 53 | 2 | 1 | 387 | 54 | 441 | 4.80E-180 | 640.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044630.t1 | Q9S7T8 | 53.5 | 391 | 175 | 4 | 1 | 385 | 1 | 390 | 2.1e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044630.t1 | G7IW05 | 85.6 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 3.4e-180 | 640.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene044630 | PPI |
| MS.gene044630 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene044630 | PPI |
| MS.gene044630 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene044630 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044630.t1 | MTR_3g018740 | 85.604 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 0.0 | 660 |
| MS.gene044630.t1 | MTR_3g101010 | 73.454 | 388 | 99 | 2 | 1 | 385 | 1 | 387 | 0.0 | 560 |
| MS.gene044630.t1 | MTR_4g045707 | 70.235 | 383 | 112 | 2 | 4 | 385 | 5 | 386 | 0.0 | 532 |
| MS.gene044630.t1 | MTR_8g027395 | 69.610 | 385 | 111 | 3 | 3 | 385 | 15 | 395 | 0.0 | 531 |
| MS.gene044630.t1 | MTR_2g045980 | 69.797 | 394 | 106 | 5 | 1 | 387 | 1 | 388 | 0.0 | 527 |
| MS.gene044630.t1 | MTR_2g046030 | 68.274 | 394 | 112 | 5 | 1 | 387 | 1 | 388 | 0.0 | 520 |
| MS.gene044630.t1 | MTR_3g101030 | 66.247 | 397 | 110 | 6 | 10 | 385 | 34 | 427 | 5.58e-180 | 507 |
| MS.gene044630.t1 | MTR_3g048000 | 66.404 | 381 | 109 | 3 | 6 | 385 | 28 | 390 | 1.39e-179 | 504 |
| MS.gene044630.t1 | MTR_8g461160 | 67.179 | 390 | 120 | 4 | 5 | 387 | 6 | 394 | 2.69e-179 | 504 |
| MS.gene044630.t1 | MTR_3g101180 | 65.500 | 400 | 121 | 8 | 1 | 385 | 1 | 398 | 2.66e-178 | 501 |
| MS.gene044630.t1 | MTR_8g027420 | 67.363 | 383 | 112 | 3 | 3 | 385 | 4 | 373 | 1.44e-177 | 499 |
| MS.gene044630.t1 | MTR_4g088525 | 68.232 | 362 | 113 | 2 | 24 | 385 | 8 | 367 | 1.02e-174 | 491 |
| MS.gene044630.t1 | MTR_4g088535 | 67.460 | 378 | 105 | 3 | 5 | 382 | 7 | 366 | 1.34e-172 | 486 |
| MS.gene044630.t1 | MTR_3g101130 | 64.175 | 388 | 128 | 4 | 4 | 385 | 5 | 387 | 7.53e-172 | 485 |
| MS.gene044630.t1 | MTR_7g451890 | 62.982 | 389 | 136 | 3 | 5 | 386 | 14 | 401 | 4.40e-171 | 483 |
| MS.gene044630.t1 | MTR_7g050750 | 62.660 | 391 | 138 | 3 | 3 | 386 | 6 | 395 | 1.63e-170 | 482 |
| MS.gene044630.t1 | MTR_7g047780 | 63.239 | 389 | 135 | 4 | 5 | 386 | 14 | 401 | 1.21e-169 | 480 |
| MS.gene044630.t1 | MTR_7g050810 | 62.821 | 390 | 135 | 4 | 5 | 386 | 16 | 403 | 3.59e-168 | 476 |
| MS.gene044630.t1 | MTR_3g101050 | 63.990 | 386 | 110 | 6 | 8 | 385 | 32 | 396 | 6.53e-160 | 455 |
| MS.gene044630.t1 | MTR_3g015620 | 61.697 | 389 | 117 | 4 | 5 | 386 | 16 | 379 | 1.35e-156 | 446 |
| MS.gene044630.t1 | MTR_3g018747 | 81.609 | 261 | 32 | 2 | 129 | 387 | 9 | 255 | 2.74e-147 | 417 |
| MS.gene044630.t1 | MTR_3g102920 | 56.853 | 394 | 121 | 7 | 5 | 385 | 51 | 408 | 6.28e-139 | 402 |
| MS.gene044630.t1 | MTR_3g101190 | 56.623 | 385 | 92 | 6 | 1 | 385 | 1 | 310 | 1.07e-136 | 393 |
| MS.gene044630.t1 | MTR_3g101200 | 54.381 | 388 | 146 | 5 | 3 | 385 | 29 | 390 | 1.06e-127 | 373 |
| MS.gene044630.t1 | MTR_3g100995 | 66.797 | 256 | 80 | 2 | 133 | 386 | 11 | 263 | 2.26e-120 | 349 |
| MS.gene044630.t1 | MTR_3g100010 | 57.692 | 312 | 84 | 3 | 28 | 306 | 40 | 336 | 8.62e-117 | 343 |
| MS.gene044630.t1 | MTR_7g050830 | 56.688 | 314 | 103 | 3 | 5 | 296 | 16 | 318 | 2.03e-116 | 342 |
| MS.gene044630.t1 | MTR_3g015760 | 64.015 | 264 | 85 | 4 | 128 | 386 | 22 | 280 | 7.64e-106 | 313 |
| MS.gene044630.t1 | MTR_3g111160 | 71.233 | 219 | 59 | 3 | 170 | 385 | 1 | 218 | 1.06e-102 | 303 |
| MS.gene044630.t1 | MTR_3g114310 | 42.748 | 393 | 206 | 10 | 6 | 384 | 20 | 407 | 2.78e-92 | 283 |
| MS.gene044630.t1 | MTR_3g100520 | 62.673 | 217 | 70 | 3 | 170 | 385 | 1 | 207 | 2.47e-87 | 263 |
| MS.gene044630.t1 | MTR_2g046410 | 66.029 | 209 | 61 | 4 | 186 | 387 | 144 | 349 | 1.06e-85 | 264 |
| MS.gene044630.t1 | MTR_3g101110 | 57.741 | 239 | 69 | 3 | 129 | 361 | 68 | 280 | 2.10e-85 | 261 |
| MS.gene044630.t1 | MTR_3g099970 | 64.039 | 203 | 55 | 3 | 123 | 325 | 14 | 198 | 2.05e-83 | 253 |
| MS.gene044630.t1 | MTR_3g111150 | 63.842 | 177 | 40 | 1 | 7 | 183 | 1 | 153 | 9.84e-69 | 214 |
| MS.gene044630.t1 | MTR_3g101020 | 55.376 | 186 | 54 | 3 | 203 | 386 | 1 | 159 | 6.70e-59 | 189 |
| MS.gene044630.t1 | MTR_3g102870 | 59.877 | 162 | 61 | 2 | 192 | 350 | 1 | 161 | 1.31e-57 | 186 |
| MS.gene044630.t1 | MTR_3g101150 | 60.759 | 158 | 54 | 3 | 235 | 385 | 1 | 157 | 1.71e-57 | 185 |
| MS.gene044630.t1 | MTR_3g100990 | 64.286 | 154 | 54 | 1 | 1 | 154 | 1 | 153 | 1.74e-55 | 190 |
| MS.gene044630.t1 | MTR_4g093550 | 69.048 | 84 | 26 | 0 | 5 | 88 | 6 | 89 | 8.20e-32 | 116 |
| MS.gene044630.t1 | MTR_6g046890 | 65.753 | 73 | 25 | 0 | 13 | 85 | 7 | 79 | 5.74e-24 | 96.7 |
| MS.gene044630.t1 | MTR_3g101140 | 58.108 | 74 | 26 | 2 | 316 | 385 | 42 | 114 | 1.04e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044630.t1 | AT1G47710 | 53.453 | 391 | 175 | 4 | 1 | 385 | 1 | 390 | 1.87e-148 | 426 |
| MS.gene044630.t1 | AT1G47710 | 53.453 | 391 | 175 | 4 | 1 | 385 | 28 | 417 | 1.60e-147 | 424 |
| MS.gene044630.t1 | AT3G45220 | 48.855 | 393 | 189 | 5 | 1 | 384 | 1 | 390 | 1.67e-128 | 375 |
| MS.gene044630.t1 | AT2G25240 | 48.969 | 388 | 188 | 5 | 1 | 384 | 1 | 382 | 1.52e-125 | 367 |
| MS.gene044630.t1 | AT2G26390 | 49.246 | 398 | 176 | 7 | 1 | 384 | 1 | 386 | 4.28e-125 | 366 |
| MS.gene044630.t1 | AT1G64030 | 44.020 | 393 | 189 | 5 | 1 | 384 | 1 | 371 | 1.37e-106 | 319 |
| MS.gene044630.t1 | AT2G14540 | 44.133 | 392 | 188 | 6 | 1 | 384 | 29 | 397 | 7.64e-104 | 313 |
| MS.gene044630.t1 | AT1G62170 | 42.532 | 395 | 191 | 6 | 1 | 384 | 62 | 431 | 7.88e-102 | 308 |
| MS.gene044630.t1 | AT2G35580 | 43.511 | 393 | 177 | 9 | 1 | 384 | 15 | 371 | 8.93e-101 | 303 |
| MS.gene044630.t1 | AT1G62170 | 39.252 | 428 | 191 | 7 | 1 | 384 | 62 | 464 | 1.01e-94 | 291 |
| MS.gene044630.t1 | AT1G64010 | 45.909 | 220 | 89 | 5 | 170 | 384 | 1 | 195 | 2.38e-59 | 191 |
| MS.gene044630.t1 | AT1G64010 | 44.878 | 205 | 83 | 5 | 185 | 384 | 2 | 181 | 3.16e-51 | 170 |
| MS.gene044630.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 126 | 241 | 5 | 120 | 8.35e-37 | 130 |
| MS.gene044630.t1 | AT1G62160 | 38.384 | 198 | 96 | 5 | 192 | 384 | 42 | 218 | 7.20e-35 | 128 |
| MS.gene044630.t1 | AT1G51330 | 50.000 | 120 | 50 | 1 | 103 | 222 | 15 | 124 | 2.17e-28 | 110 |
| MS.gene044630.t1 | AT1G64020 | 32.231 | 121 | 79 | 3 | 1 | 119 | 1 | 120 | 1.88e-14 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.1:+11257855 | MS.gene044630:CDS |
| CCTCGACTCTCCTTTGTTAA+TGG | 0.226202 | 3.1:+11257000 | MS.gene044630:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.1:-11258023 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11257797 | None:intergenic |
| TCTCCTTTGTTAATGGTGTA+TGG | 0.291781 | 3.1:+11257007 | MS.gene044630:CDS |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3.1:-11258074 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.1:+11258470 | MS.gene044630:CDS |
| GTTGAGATGATCAGTGGATT+TGG | 0.354332 | 3.1:-11256920 | None:intergenic |
| TTCTAATTACGAGGCCACTA+TGG | 0.368326 | 3.1:+11257077 | MS.gene044630:CDS |
| CTCCTTTGTTAATGGTGTAT+GGG | 0.393630 | 3.1:+11257008 | MS.gene044630:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.1:-11256788 | None:intergenic |
| TCTGATATGTTGAAGGAGTT+AGG | 0.394592 | 3.1:+11258218 | MS.gene044630:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.1:-11257041 | None:intergenic |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3.1:+11258068 | MS.gene044630:CDS |
| TGCATAGGGAAACGTTTGTT+TGG | 0.411227 | 3.1:-11256762 | None:intergenic |
| AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.1:-11257058 | None:intergenic |
| TGAAACTTCTGATATGTTGA+AGG | 0.432611 | 3.1:+11258211 | MS.gene044630:CDS |
| GTCAGCATTGGTTGATGAGT+TGG | 0.440539 | 3.1:+11258094 | MS.gene044630:CDS |
| GTTAAGCTATCAACAGATCT+TGG | 0.441723 | 3.1:-11257819 | None:intergenic |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.1:+11256973 | MS.gene044630:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.1:-11257040 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.459047 | 3.1:+11258278 | MS.gene044630:CDS |
| ATCTCAACGATCTCGCCTCT+CGG | 0.459180 | 3.1:+11256935 | MS.gene044630:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.1:+11258014 | MS.gene044630:CDS |
| TGACTAAAGAAGTGAATTTG+TGG | 0.461662 | 3.1:+11257754 | MS.gene044630:CDS |
| TTCATTGAAGTAAACGAAGA+AGG | 0.465672 | 3.1:+11258338 | MS.gene044630:CDS |
| AACAGCTTCTCGACTTCCTC+CGG | 0.467511 | 3.1:+11256896 | MS.gene044630:CDS |
| CATCTCCTCGCTAGTCATGA+AGG | 0.477758 | 3.1:-11257958 | None:intergenic |
| ATCGTCGCTGCTGGCTCTGA+GGG | 0.478136 | 3.1:+11256862 | MS.gene044630:CDS |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.1:-11256977 | None:intergenic |
| GTCAAACCTCCGGAAAAGAA+AGG | 0.482483 | 3.1:-11258251 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.1:-11258440 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3.1:-11258125 | None:intergenic |
| GTACTAAGCATCGTCGCTGC+TGG | 0.497961 | 3.1:+11256853 | MS.gene044630:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.1:-11257841 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.1:+11258452 | MS.gene044630:CDS |
| TAGGGAAACGTTTGTTTGGT+TGG | 0.507693 | 3.1:-11256758 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.1:+11257862 | MS.gene044630:CDS |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.1:+11256976 | MS.gene044630:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.1:-11257929 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.1:-11258439 | None:intergenic |
| CATCGTCGCTGCTGGCTCTG+AGG | 0.516897 | 3.1:+11256861 | MS.gene044630:CDS |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.1:-11256776 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.526117 | 3.1:-11257054 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 3.1:-11258152 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3.1:-11256744 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.1:-11258477 | None:intergenic |
| GCTACGAAGTCAAGCTGAGT+TGG | 0.528929 | 3.1:-11258410 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.1:+11257932 | MS.gene044630:CDS |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 3.1:+11258149 | MS.gene044630:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.1:-11256777 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.1:-11257091 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.1:-11258506 | None:intergenic |
| GATGATCAGTGGATTTGGAC+CGG | 0.547774 | 3.1:-11256915 | None:intergenic |
| AAGCTGAGTTGGAATACCCT+TGG | 0.547886 | 3.1:-11258399 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.1:-11258307 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.1:+11257101 | MS.gene044630:CDS |
| GACTAAAGAAGTGAATTTGT+GGG | 0.580421 | 3.1:+11257755 | MS.gene044630:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.1:-11256887 | None:intergenic |
| AAGCTATCAACAGATCTTGG+AGG | 0.593651 | 3.1:-11257816 | None:intergenic |
| TGCTGAAATATGTTGTTCCA+AGG | 0.600261 | 3.1:+11258382 | MS.gene044630:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.1:-11256886 | None:intergenic |
| GGTGCTGAAGCTGTTGCCGT+TGG | 0.610281 | 3.1:+11258359 | MS.gene044630:CDS |
| ATCTCCTCGCTAGTCATGAA+GGG | 0.612833 | 3.1:-11257957 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.621267 | 3.1:+11258223 | MS.gene044630:CDS |
| GGGAGCAGCATCGGAGAGCA+CGG | 0.622379 | 3.1:-11256968 | None:intergenic |
| ACAACATATTTCAGCACCAA+CGG | 0.624380 | 3.1:-11258375 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11256988 | None:intergenic |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3.1:+11258082 | MS.gene044630:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.1:-11258436 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11256989 | None:intergenic |
| AACCCATACACCATTAACAA+AGG | 0.653670 | 3.1:-11257010 | None:intergenic |
| AATCGTGTCTTCTAATTACG+AGG | 0.667058 | 3.1:+11257068 | MS.gene044630:CDS |
| CACGGTAGAAACAAGCCGAG+AGG | 0.667491 | 3.1:-11256950 | None:intergenic |
| GCTGAAATATGTTGTTCCAA+GGG | 0.667759 | 3.1:+11258383 | MS.gene044630:CDS |
| GGTTCCCTTCATGACTAGCG+AGG | 0.683605 | 3.1:+11257953 | MS.gene044630:CDS |
| GAGATCGTTGAGATGATCAG+TGG | 0.692888 | 3.1:-11256926 | None:intergenic |
| GATCAGTGGATTTGGACCGG+AGG | 0.698561 | 3.1:-11256912 | None:intergenic |
| CCATTAACAAAGGAGAGTCG+AGG | 0.698808 | 3.1:-11257000 | None:intergenic |
| AGTACTACTTGAAGAGACAG+TGG | 0.701659 | 3.1:-11256835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTATTAACAATTAA+TGG | + | chr3.1:11257166-11257185 | MS.gene044630:intron | 10.0% |
| !! | TCATATAGTTATGATATATT+TGG | + | chr3.1:11257416-11257435 | MS.gene044630:intron | 15.0% |
| !!! | ATGGATTTTTAAATTTGATA+TGG | + | chr3.1:11257713-11257732 | MS.gene044630:intron | 15.0% |
| !!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.1:11257722-11257741 | MS.gene044630:intron | 15.0% |
| !! | ACTTATAAGTATTATACTCT+TGG | + | chr3.1:11257289-11257308 | MS.gene044630:intron | 20.0% |
| !! | ATAAAATAAACTGTTTGTGA+AGG | - | chr3.1:11257197-11257216 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.1:11258310-11258329 | None:intergenic | 20.0% |
| !! | TAGTTATGATATATTTGGAT+TGG | + | chr3.1:11257421-11257440 | MS.gene044630:intron | 20.0% |
| !! | TATCATAACTATATGATTGA+AGG | - | chr3.1:11257412-11257431 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAAAT+AGG | - | chr3.1:11257232-11257251 | None:intergenic | 20.0% |
| !!! | ATTTAAAAATCCATTAGCTT+TGG | - | chr3.1:11257707-11257726 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.1:11258188-11258207 | None:intergenic | 20.0% |
| ! | CAATTAGTATTTAGAAGCTT+TGG | - | chr3.1:11257578-11257597 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.1:11258442-11258461 | None:intergenic | 25.0% |
| ! | TAATTGTTTATTTCAGCACA+AGG | + | chr3.1:11257592-11257611 | MS.gene044630:intron | 25.0% |
| ! | TACTCTTGGAATTTATTTGA+TGG | + | chr3.1:11257303-11257322 | MS.gene044630:intron | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:11258443-11258462 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.1:11258026-11258045 | None:intergenic | 25.0% |
| !! | ATTGGTGGTATATAGTATAA+TGG | + | chr3.1:11257439-11257458 | MS.gene044630:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.1:11257918-11257937 | MS.gene044630:CDS | 25.0% |
| !! | TTATGATATATTTGGATTGG+TGG | + | chr3.1:11257424-11257443 | MS.gene044630:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.1:11257101-11257120 | MS.gene044630:CDS | 25.0% |
| ACATCTAACTAGCCAATAAA+AGG | - | chr3.1:11257545-11257564 | None:intergenic | 30.0% | |
| CATCTAACTAGCCAATAAAA+GGG | - | chr3.1:11257544-11257563 | None:intergenic | 30.0% | |
| GACTAAAGAAGTGAATTTGT+GGG | + | chr3.1:11257755-11257774 | MS.gene044630:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11257800-11257819 | None:intergenic | 30.0% | |
| GTATGTCCATCTTGTATATT+TGG | + | chr3.1:11257628-11257647 | MS.gene044630:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.1:11258439-11258458 | None:intergenic | 30.0% | |
| TAGAAAATAAAAGCAGTGCA+TGG | - | chr3.1:11257155-11257174 | None:intergenic | 30.0% | |
| TCGATAATTACCAAAGCTAA+TGG | + | chr3.1:11257694-11257713 | MS.gene044630:intron | 30.0% | |
| TGAAACTTCTGATATGTTGA+AGG | + | chr3.1:11258211-11258230 | MS.gene044630:CDS | 30.0% | |
| TGACTAAAGAAGTGAATTTG+TGG | + | chr3.1:11257754-11257773 | MS.gene044630:CDS | 30.0% | |
| TTCATTGAAGTAAACGAAGA+AGG | + | chr3.1:11258338-11258357 | MS.gene044630:CDS | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.1:11256791-11256810 | None:intergenic | 30.0% | |
| TTGATTCTAGTGTAGAAAGT+AGG | + | chr3.1:11257330-11257349 | MS.gene044630:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | + | chr3.1:11258068-11258087 | MS.gene044630:CDS | 30.0% | |
| ! | AAAGTAGGTTCTTCTTTTAG+AGG | + | chr3.1:11257345-11257364 | MS.gene044630:intron | 30.0% |
| ! | ATAAAAGGGTATACTTGGAT+TGG | - | chr3.1:11257530-11257549 | None:intergenic | 30.0% |
| ! | ATCCAAGTATACCCTTTTAT+TGG | + | chr3.1:11257530-11257549 | MS.gene044630:intron | 30.0% |
| ! | TGGTATATAGTATAATGGAG+TGG | + | chr3.1:11257444-11257463 | MS.gene044630:intron | 30.0% |
| !! | GATTGGTGTTATTGAGTAAA+AGG | - | chr3.1:11257513-11257532 | None:intergenic | 30.0% |
| AACCCATACACCATTAACAA+AGG | - | chr3.1:11257013-11257032 | None:intergenic | 35.0% | |
| AATCGTGTCTTCTAATTACG+AGG | + | chr3.1:11257068-11257087 | MS.gene044630:CDS | 35.0% | |
| ACAACATATTTCAGCACCAA+CGG | - | chr3.1:11258378-11258397 | None:intergenic | 35.0% | |
| ACACCTCCAAATATACAAGA+TGG | - | chr3.1:11257637-11257656 | None:intergenic | 35.0% | |
| AGAAGACACGATTTCTTTGA+AGG | - | chr3.1:11257061-11257080 | None:intergenic | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | chr3.1:11258128-11258147 | None:intergenic | 35.0% | |
| CTCCTTTGTTAATGGTGTAT+GGG | + | chr3.1:11257008-11257027 | MS.gene044630:CDS | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.1:11257094-11257113 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.1:11257855-11257874 | MS.gene044630:CDS | 35.0% | |
| GCTGAAATATGTTGTTCCAA+GGG | + | chr3.1:11258383-11258402 | MS.gene044630:CDS | 35.0% | |
| GGAGTGGAATGAAATGATTT+GGG | + | chr3.1:11257460-11257479 | MS.gene044630:intron | 35.0% | |
| GTTAAGCTATCAACAGATCT+TGG | - | chr3.1:11257822-11257841 | None:intergenic | 35.0% | |
| TCTCCTTTGTTAATGGTGTA+TGG | + | chr3.1:11257007-11257026 | MS.gene044630:CDS | 35.0% | |
| TCTGATATGTTGAAGGAGTT+AGG | + | chr3.1:11258218-11258237 | MS.gene044630:CDS | 35.0% | |
| TGCTGAAATATGTTGTTCCA+AGG | + | chr3.1:11258382-11258401 | MS.gene044630:CDS | 35.0% | |
| TGGAGTGGAATGAAATGATT+TGG | + | chr3.1:11257459-11257478 | MS.gene044630:intron | 35.0% | |
| TGTCCATCTTGTATATTTGG+AGG | + | chr3.1:11257631-11257650 | MS.gene044630:intron | 35.0% | |
| ! | AGCCAATAAAAGGGTATACT+TGG | - | chr3.1:11257535-11257554 | None:intergenic | 35.0% |
| !! | GTGGTTTTACCTTTCTTTTC+CGG | + | chr3.1:11258242-11258261 | MS.gene044630:CDS | 35.0% |
| !! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.1:11256747-11256766 | None:intergenic | 35.0% |
| AAGCTATCAACAGATCTTGG+AGG | - | chr3.1:11257819-11257838 | None:intergenic | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.1:11256780-11256799 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.1:11258470-11258489 | MS.gene044630:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.1:11257365-11257384 | MS.gene044630:intron | 40.0% | |
| AGTACTACTTGAAGAGACAG+TGG | - | chr3.1:11256838-11256857 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.1:11258480-11258499 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.1:11256779-11256798 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.1:11258452-11258471 | MS.gene044630:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.1:11258014-11258033 | MS.gene044630:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:11257043-11257062 | None:intergenic | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | - | chr3.1:11258077-11258096 | None:intergenic | 40.0% | |
| GGGGATATACAAACATACCT+TGG | - | chr3.1:11257121-11257140 | None:intergenic | 40.0% | |
| TAGGGAAACGTTTGTTTGGT+TGG | - | chr3.1:11256761-11256780 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.1:11258223-11258242 | MS.gene044630:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:11257044-11257063 | None:intergenic | 40.0% | |
| TGCATAGGGAAACGTTTGTT+TGG | - | chr3.1:11256765-11256784 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.1:11257844-11257863 | None:intergenic | 40.0% | |
| TTCCGGAGGTTTGACAAAAA+TGG | + | chr3.1:11258259-11258278 | MS.gene044630:CDS | 40.0% | |
| TTCTAATTACGAGGCCACTA+TGG | + | chr3.1:11257077-11257096 | MS.gene044630:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11257862-11257881 | MS.gene044630:CDS | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.1:11257057-11257076 | None:intergenic | 40.0% |
| ! | GTTGAGATGATCAGTGGATT+TGG | - | chr3.1:11256923-11256942 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTTTTCCGG+AGG | + | chr3.1:11258245-11258264 | MS.gene044630:CDS | 40.0% |
| !! | CACCATTTTTGTCAAACCTC+CGG | - | chr3.1:11258264-11258283 | None:intergenic | 40.0% |
| !! | TAAAGATGGACTGTCAGCAT+TGG | + | chr3.1:11258082-11258101 | MS.gene044630:CDS | 40.0% |
| ATCTCCTCGCTAGTCATGAA+GGG | - | chr3.1:11257960-11257979 | None:intergenic | 45.0% | |
| CCATTAACAAAGGAGAGTCG+AGG | - | chr3.1:11257003-11257022 | None:intergenic | 45.0% | |
| CCTCGACTCTCCTTTGTTAA+TGG | + | chr3.1:11257000-11257019 | MS.gene044630:CDS | 45.0% | |
| CGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11258262-11258281 | MS.gene044630:CDS | 45.0% | |
| GAGATCGTTGAGATGATCAG+TGG | - | chr3.1:11256929-11256948 | None:intergenic | 45.0% | |
| GTCAAACCTCCGGAAAAGAA+AGG | - | chr3.1:11258254-11258273 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.1:11256889-11256908 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.1:11257774-11257793 | MS.gene044630:CDS | 45.0% | |
| ! | AAGCTGAGTTGGAATACCCT+TGG | - | chr3.1:11258402-11258421 | None:intergenic | 45.0% |
| ! | AGCAGTGCATGGATTGAAAG+AGG | - | chr3.1:11257144-11257163 | None:intergenic | 45.0% |
| ! | AGTGCATGGATTGAAAGAGG+GGG | - | chr3.1:11257141-11257160 | None:intergenic | 45.0% |
| ! | CAGTGCATGGATTGAAAGAG+GGG | - | chr3.1:11257142-11257161 | None:intergenic | 45.0% |
| ! | GATGATCAGTGGATTTGGAC+CGG | - | chr3.1:11256918-11256937 | None:intergenic | 45.0% |
| ! | GCAGTGCATGGATTGAAAGA+GGG | - | chr3.1:11257143-11257162 | None:intergenic | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.1:11257926-11257945 | MS.gene044630:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | chr3.1:11258278-11258297 | MS.gene044630:CDS | 45.0% |
| !! | GTCAGCATTGGTTGATGAGT+TGG | + | chr3.1:11258094-11258113 | MS.gene044630:CDS | 45.0% |
| AACAGCTTCTCGACTTCCTC+CGG | + | chr3.1:11256896-11256915 | MS.gene044630:CDS | 50.0% | |
| ATCTCAACGATCTCGCCTCT+CGG | + | chr3.1:11256935-11256954 | MS.gene044630:CDS | 50.0% | |
| CATCTCCTCGCTAGTCATGA+AGG | - | chr3.1:11257961-11257980 | None:intergenic | 50.0% | |
| GCTACGAAGTCAAGCTGAGT+TGG | - | chr3.1:11258413-11258432 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.1:11256890-11256909 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | chr3.1:11258155-11258174 | None:intergenic | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.1:11257932-11257951 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.1:11257932-11257951 | MS.gene044630:CDS | 50.0% | |
| ! | GTGCATGGATTGAAAGAGGG+GGG | - | chr3.1:11257140-11257159 | None:intergenic | 50.0% |
| CACGGTAGAAACAAGCCGAG+AGG | - | chr3.1:11256953-11256972 | None:intergenic | 55.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | chr3.1:11258149-11258168 | MS.gene044630:CDS | 55.0% | |
| GGTTCCCTTCATGACTAGCG+AGG | + | chr3.1:11257953-11257972 | MS.gene044630:CDS | 55.0% | |
| ! | GATCAGTGGATTTGGACCGG+AGG | - | chr3.1:11256915-11256934 | None:intergenic | 55.0% |
| ! | GTACTAAGCATCGTCGCTGC+TGG | + | chr3.1:11256853-11256872 | MS.gene044630:CDS | 55.0% |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11256991-11257010 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.1:11256980-11256999 | None:intergenic | 60.0% | |
| ! | GGTGCTGAAGCTGTTGCCGT+TGG | + | chr3.1:11258359-11258378 | MS.gene044630:CDS | 60.0% |
| !! | ATCGTCGCTGCTGGCTCTGA+GGG | + | chr3.1:11256862-11256881 | MS.gene044630:CDS | 60.0% |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.1:11256973-11256992 | MS.gene044630:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11256992-11257011 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.1:11256976-11256995 | MS.gene044630:CDS | 65.0% | |
| ! | GGGAGCAGCATCGGAGAGCA+CGG | - | chr3.1:11256971-11256990 | None:intergenic | 65.0% |
| !! | CATCGTCGCTGCTGGCTCTG+AGG | + | chr3.1:11256861-11256880 | MS.gene044630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 11256736 | 11258520 | 11256736 | ID=MS.gene044630 |
| chr3.1 | mRNA | 11256736 | 11258520 | 11256736 | ID=MS.gene044630.t1;Parent=MS.gene044630 |
| chr3.1 | exon | 11256736 | 11257122 | 11256736 | ID=MS.gene044630.t1.exon1;Parent=MS.gene044630.t1 |
| chr3.1 | CDS | 11256736 | 11257122 | 11256736 | ID=cds.MS.gene044630.t1;Parent=MS.gene044630.t1 |
| chr3.1 | exon | 11257744 | 11258520 | 11257744 | ID=MS.gene044630.t1.exon2;Parent=MS.gene044630.t1 |
| chr3.1 | CDS | 11257744 | 11258520 | 11257744 | ID=cds.MS.gene044630.t1;Parent=MS.gene044630.t1 |
| Gene Sequence |
| Protein sequence |
